Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/eac41c56d0abac9ed1b3e0d848ceb4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/c8590f94f58d2b099e8ed73390973f/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/eac41c56d0abac9ed1b3e0d848ceb4/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory