Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/82eb691afb36c58fdcf535755261e6/fi_workdir/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/7322476c735ace2349f8c1609896b4/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/7322476c735ace2349f8c1609896b4/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 5617
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 5617
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:5617
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC004943.2--WWOX HAVANA gene 17805 35323 . + . FI_gene_label "WWOX^ENSG00000186153.17" ; ID "AC004943.2--WWOX^WWOX^ENSG00000186153.17" ; ccdsid "CCDS42197.1" ; exon_id "ENSE00002598693.1" ; exon_number 1 ; gene_id "AC004943.2--WWOX^WWOX^ENSG00000186153.17" ; gene_name WWOX ; gene_type protein_coding ; havana_gene "OTTHUMG00000176851.3" ; havana_transcript "OTTHUMT00000434020.1" ; hgnc_id "HGNC:12799" ; level 2 ; orig_coord_info "chr16,78099779,78099885,+" ; protein_id "ENSP00000348119.3" ; tag basic CCDS ; transcript_id "AC004943.2--WWOX^ENST00000355860.7" ; transcript_name "WWOX-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC004943.2--WWOX HAVANA mRNA 17805 35323 . + . FI_gene_label "WWOX^ENSG00000186153.17" ; ID "AC004943.2--WWOX^ENST00000355860.7" ; Parent "AC004943.2--WWOX^WWOX^ENSG00000186153.17" ; ccdsid "CCDS42197.1" ; exon_id "ENSE00002598693.1" ; exon_number 1 ; gene_id "AC004943.2--WWOX^WWOX^ENSG00000186153.17" ; gene_name WWOX ; gene_type protein_coding ; havana_gene "OTTHUMG00000176851.3" ; havana_transcript "OTTHUMT00000434020.1" ; hgnc_id "HGNC:12799" ; level 2 ; orig_coord_info "chr16,78099779,78099885,+" ; protein_id "ENSP00000348119.3" ; tag basic CCDS ; transcript_id "AC004943.2--WWOX^ENST00000355860.7" ; transcript_name "WWOX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL669831.1--SEPTIN14 HAVANA gene 24499 38046 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
AL669831.1--SEPTIN14 HAVANA mRNA 24499 38046 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.1--SEPTIN14^ENST00000388975.4" ; Parent "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ATP13A4--OPA1 HAVANA gene 3480 17624 . + . FI_gene_label "ATP13A4^ENSG00000127249.15" ; ID "ATP13A4--OPA1^ATP13A4^ENSG00000127249.15" ; exon_id "ENSE00001892284.1" ; exon_number 1 ; gene_id "ATP13A4--OPA1^ATP13A4^ENSG00000127249.15" ; gene_name ATP13A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074067.7" ; havana_transcript "OTTHUMT00000343023.1" ; hgnc_id "HGNC:25422" ; level 2 ; orig_coord_info "chr3,193554740,193554799,-" ; protein_id "ENSP00000295548.3" ; tag basic ; transcript_id "ATP13A4--OPA1^ENST00000295548.3" ; transcript_name "ATP13A4-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATP13A4--OPA1 HAVANA mRNA 3480 17624 . + . FI_gene_label "ATP13A4^ENSG00000127249.15" ; ID "ATP13A4--OPA1^ENST00000295548.3" ; Parent "ATP13A4--OPA1^ATP13A4^ENSG00000127249.15" ; exon_id "ENSE00001892284.1" ; exon_number 1 ; gene_id "ATP13A4--OPA1^ATP13A4^ENSG00000127249.15" ; gene_name ATP13A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074067.7" ; havana_transcript "OTTHUMT00000343023.1" ; hgnc_id "HGNC:25422" ; level 2 ; orig_coord_info "chr3,193554740,193554799,-" ; protein_id "ENSP00000295548.3" ; tag basic ; transcript_id "ATP13A4--OPA1^ENST00000295548.3" ; transcript_name "ATP13A4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATP13A4--OPA1 ENSEMBL gene 44272 81603 . + . FI_gene_label "OPA1^ENSG00000198836.11" ; ID "ATP13A4--OPA1^OPA1^ENSG00000198836.11" ; exon_id "ENSE00001747719.1" ; exon_number 1 ; gene_id "ATP13A4--OPA1^OPA1^ENSG00000198836.11" ; gene_name OPA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149897.21" ; hgnc_id "HGNC:8140" ; level 3 ; orig_coord_info "chr3,193593378,193593409,+" ; protein_id "ENSP00000354781.2" ; tag basic ; transcript_id "ATP13A4--OPA1^ENST00000361150.6" ; transcript_name "OPA1-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATP13A4--OPA1 ENSEMBL mRNA 44272 81603 . + . FI_gene_label "OPA1^ENSG00000198836.11" ; ID "ATP13A4--OPA1^ENST00000361150.6" ; Parent "ATP13A4--OPA1^OPA1^ENSG00000198836.11" ; exon_id "ENSE00001747719.1" ; exon_number 1 ; gene_id "ATP13A4--OPA1^OPA1^ENSG00000198836.11" ; gene_name OPA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149897.21" ; hgnc_id "HGNC:8140" ; level 3 ; orig_coord_info "chr3,193593378,193593409,+" ; protein_id "ENSP00000354781.2" ; tag basic ; transcript_id "ATP13A4--OPA1^ENST00000361150.6" ; transcript_name "OPA1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CREBBP--LINC02861 HAVANA gene 1001 44068 . + . FI_gene_label "CREBBP^ENSG00000005339.15" ; ID "CREBBP--LINC02861^CREBBP^ENSG00000005339.15" ; ccdsid "CCDS10509.1" ; exon_id "ENSE00001871332.3" ; exon_number 1 ; gene_id "CREBBP--LINC02861^CREBBP^ENSG00000005339.15" ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7" ; havana_transcript "OTTHUMT00000251591.3" ; hgnc_id "HGNC:2348" ; level 2 ; orig_coord_info "chr16,3879832,3879916,-" ; protein_id "ENSP00000262367.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--LINC02861^ENST00000262367.10" ; transcript_name "CREBBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
CREBBP--LINC02861 HAVANA mRNA 1001 44068 . + . FI_gene_label "CREBBP^ENSG00000005339.15" ; ID "CREBBP--LINC02861^ENST00000262367.10" ; Parent "CREBBP--LINC02861^CREBBP^ENSG00000005339.15" ; ccdsid "CCDS10509.1" ; exon_id "ENSE00001871332.3" ; exon_number 1 ; gene_id "CREBBP--LINC02861^CREBBP^ENSG00000005339.15" ; gene_name CREBBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129431.7" ; havana_transcript "OTTHUMT00000251591.3" ; hgnc_id "HGNC:2348" ; level 2 ; orig_coord_info "chr16,3879832,3879916,-" ; protein_id "ENSP00000262367.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CREBBP--LINC02861^ENST00000262367.10" ; transcript_name "CREBBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX19B--AC009060.2 HAVANA gene 3681 18123 . + . FI_gene_label "DDX19B^ENSG00000157349.17" ; ID "DDX19B--AC009060.2^DDX19B^ENSG00000157349.17" ; ccdsid "CCDS10888.1" ; exon_id "ENSE00002614269.2" ; exon_number 1 ; gene_id "DDX19B--AC009060.2^DDX19B^ENSG00000157349.17" ; gene_name DDX19B ; gene_type protein_coding ; havana_gene "OTTHUMG00000137577.6" ; havana_transcript "OTTHUMT00000268965.3" ; hgnc_id "HGNC:2742" ; level 2 ; orig_coord_info "chr16,70299298,70299354,+" ; protein_id "ENSP00000288071.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX19B--AC009060.2^ENST00000288071.11" ; transcript_name "DDX19B-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX19B--AC009060.2 HAVANA mRNA 3681 18123 . + . FI_gene_label "DDX19B^ENSG00000157349.17" ; ID "DDX19B--AC009060.2^ENST00000288071.11" ; Parent "DDX19B--AC009060.2^DDX19B^ENSG00000157349.17" ; ccdsid "CCDS10888.1" ; exon_id "ENSE00002614269.2" ; exon_number 1 ; gene_id "DDX19B--AC009060.2^DDX19B^ENSG00000157349.17" ; gene_name DDX19B ; gene_type protein_coding ; havana_gene "OTTHUMG00000137577.6" ; havana_transcript "OTTHUMT00000268965.3" ; hgnc_id "HGNC:2742" ; level 2 ; orig_coord_info "chr16,70299298,70299354,+" ; protein_id "ENSP00000288071.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX19B--AC009060.2^ENST00000288071.11" ; transcript_name "DDX19B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FKBP5--SRPK1 HAVANA gene 3325 22879 . + . FI_gene_label "FKBP5^ENSG00000096060.15" ; ID "FKBP5--SRPK1^FKBP5^ENSG00000096060.15" ; ccdsid "CCDS4808.1" ; exon_id "ENSE00001370159.1" ; exon_number 2 ; gene_id "FKBP5--SRPK1^FKBP5^ENSG00000096060.15" ; gene_name FKBP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014576.2" ; havana_transcript "OTTHUMT00000040309.2" ; hgnc_id "HGNC:3721" ; level 2 ; orig_coord_info "chr6,35642720,35642824,-" ; protein_id "ENSP00000349811.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP5--SRPK1^ENST00000357266.9" ; transcript_name "FKBP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
FKBP5--SRPK1 HAVANA mRNA 3325 22879 . + . FI_gene_label "FKBP5^ENSG00000096060.15" ; ID "FKBP5--SRPK1^ENST00000357266.9" ; Parent "FKBP5--SRPK1^FKBP5^ENSG00000096060.15" ; ccdsid "CCDS4808.1" ; exon_id "ENSE00001370159.1" ; exon_number 2 ; gene_id "FKBP5--SRPK1^FKBP5^ENSG00000096060.15" ; gene_name FKBP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014576.2" ; havana_transcript "OTTHUMT00000040309.2" ; hgnc_id "HGNC:3721" ; level 2 ; orig_coord_info "chr6,35642720,35642824,-" ; protein_id "ENSP00000349811.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP5--SRPK1^ENST00000357266.9" ; transcript_name "FKBP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FKBP5--SRPK1 HAVANA gene 26180 46372 . + . FI_gene_label "SRPK1^ENSG00000096063.16" ; ID "FKBP5--SRPK1^SRPK1^ENSG00000096063.16" ; exon_id "ENSE00002056491.1" ; exon_number 1 ; gene_id "FKBP5--SRPK1^SRPK1^ENSG00000096063.16" ; gene_name SRPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014583.7" ; havana_transcript "OTTHUMT00000370434.1" ; hgnc_id "HGNC:11305" ; level 2 ; orig_coord_info "chr6,35920987,35921047,-" ; protein_id "ENSP00000354674.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "FKBP5--SRPK1^ENST00000361690.7" ; transcript_name "SRPK1-202" ; transcript_support_level 1 ; transcript_type protein_coding
FKBP5--SRPK1 HAVANA mRNA 26180 46372 . + . FI_gene_label "SRPK1^ENSG00000096063.16" ; ID "FKBP5--SRPK1^ENST00000361690.7" ; Parent "FKBP5--SRPK1^SRPK1^ENSG00000096063.16" ; exon_id "ENSE00002056491.1" ; exon_number 1 ; gene_id "FKBP5--SRPK1^SRPK1^ENSG00000096063.16" ; gene_name SRPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014583.7" ; havana_transcript "OTTHUMT00000370434.1" ; hgnc_id "HGNC:11305" ; level 2 ; orig_coord_info "chr6,35920987,35921047,-" ; protein_id "ENSP00000354674.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "FKBP5--SRPK1^ENST00000361690.7" ; transcript_name "SRPK1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIVEP3--ESRRG HAVANA gene 34981 68077 . + . FI_gene_label "ESRRG^ENSG00000196482.18" ; ID "HIVEP3--ESRRG^ESRRG^ENSG00000196482.18" ; ccdsid "CCDS1517.1" ; exon_id "ENSE00003521529.1" ; exon_number 3 ; gene_id "HIVEP3--ESRRG^ESRRG^ENSG00000196482.18" ; gene_name ESRRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000037025.15" ; havana_transcript "OTTHUMT00000089913.1" ; hgnc_id "HGNC:3474" ; level 2 ; orig_coord_info "chr1,216677076,216677478,-" ; protein_id "ENSP00000352077.2" ; tag alternative_5_UTR basic CCDS ; transcript_id "HIVEP3--ESRRG^ENST00000359162.6" ; transcript_name "ESRRG-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIVEP3--ESRRG HAVANA mRNA 34981 68077 . + . FI_gene_label "ESRRG^ENSG00000196482.18" ; ID "HIVEP3--ESRRG^ENST00000359162.6" ; Parent "HIVEP3--ESRRG^ESRRG^ENSG00000196482.18" ; ccdsid "CCDS1517.1" ; exon_id "ENSE00003521529.1" ; exon_number 3 ; gene_id "HIVEP3--ESRRG^ESRRG^ENSG00000196482.18" ; gene_name ESRRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000037025.15" ; havana_transcript "OTTHUMT00000089913.1" ; hgnc_id "HGNC:3474" ; level 2 ; orig_coord_info "chr1,216677076,216677478,-" ; protein_id "ENSP00000352077.2" ; tag alternative_5_UTR basic CCDS ; transcript_id "HIVEP3--ESRRG^ENST00000359162.6" ; transcript_name "ESRRG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIVEP3--ESRRG HAVANA gene 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--ESRRG^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--ESRRG^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--ESRRG^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIVEP3--ESRRG HAVANA mRNA 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--ESRRG^ENST00000372583.6" ; Parent "HIVEP3--ESRRG^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--ESRRG^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--ESRRG^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INO80--NUSAP1 HAVANA gene 44496 59361 . + . FI_gene_label "NUSAP1^ENSG00000137804.14" ; ID "INO80--NUSAP1^NUSAP1^ENSG00000137804.14" ; ccdsid "CCDS58357.1" ; exon_id "ENSE00002541618.1" ; exon_number 1 ; gene_id "INO80--NUSAP1^NUSAP1^ENSG00000137804.14" ; gene_name NUSAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000193352.3" ; havana_transcript "OTTHUMT00000419327.2" ; hgnc_id "HGNC:18538" ; level 2 ; orig_coord_info "chr15,41332958,41333050,+" ; protein_id "ENSP00000260359.6" ; tag NAGNAG_splice_site basic appris_alternative_2 CCDS ; transcript_id "INO80--NUSAP1^ENST00000260359.10" ; transcript_name "NUSAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
INO80--NUSAP1 HAVANA mRNA 44496 59361 . + . FI_gene_label "NUSAP1^ENSG00000137804.14" ; ID "INO80--NUSAP1^ENST00000260359.10" ; Parent "INO80--NUSAP1^NUSAP1^ENSG00000137804.14" ; ccdsid "CCDS58357.1" ; exon_id "ENSE00002541618.1" ; exon_number 1 ; gene_id "INO80--NUSAP1^NUSAP1^ENSG00000137804.14" ; gene_name NUSAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000193352.3" ; havana_transcript "OTTHUMT00000419327.2" ; hgnc_id "HGNC:18538" ; level 2 ; orig_coord_info "chr15,41332958,41333050,+" ; protein_id "ENSP00000260359.6" ; tag NAGNAG_splice_site basic appris_alternative_2 CCDS ; transcript_id "INO80--NUSAP1^ENST00000260359.10" ; transcript_name "NUSAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INO80--NUSAP1 ENSEMBL gene 1128 39749 . + . FI_gene_label "INO80^ENSG00000128908.17" ; ID "INO80--NUSAP1^INO80^ENSG00000128908.17" ; ccdsid "CCDS10071.1" ; exon_id "ENSE00002244371.1" ; exon_number 2 ; gene_id "INO80--NUSAP1^INO80^ENSG00000128908.17" ; gene_name INO80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130209.6" ; hgnc_id "HGNC:26956" ; level 3 ; orig_coord_info "chr15,41096168,41096310,-" ; protein_id "ENSP00000384686.3" ; tag basic appris_principal_1 CCDS ; transcript_id "INO80--NUSAP1^ENST00000401393.7" ; transcript_name "INO80-201" ; transcript_support_level 1 ; transcript_type protein_coding
INO80--NUSAP1 ENSEMBL mRNA 1128 39749 . + . FI_gene_label "INO80^ENSG00000128908.17" ; ID "INO80--NUSAP1^ENST00000401393.7" ; Parent "INO80--NUSAP1^INO80^ENSG00000128908.17" ; ccdsid "CCDS10071.1" ; exon_id "ENSE00002244371.1" ; exon_number 2 ; gene_id "INO80--NUSAP1^INO80^ENSG00000128908.17" ; gene_name INO80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130209.6" ; hgnc_id "HGNC:26956" ; level 3 ; orig_coord_info "chr15,41096168,41096310,-" ; protein_id "ENSP00000384686.3" ; tag basic appris_principal_1 CCDS ; transcript_id "INO80--NUSAP1^ENST00000401393.7" ; transcript_name "INO80-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LGALS8--EDARADD HAVANA gene 2986 13449 . + . FI_gene_label "LGALS8^ENSG00000116977.19" ; ID "LGALS8--EDARADD^LGALS8^ENSG00000116977.19" ; exon_id "ENSE00003563486.1" ; exon_number 2 ; gene_id "LGALS8--EDARADD^LGALS8^ENSG00000116977.19" ; gene_name LGALS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039953.10" ; havana_transcript "OTTHUMT00000096626.3" ; hgnc_id "HGNC:6569" ; level 2 ; orig_coord_info "chr1,236526071,236526115,+" ; protein_id "ENSP00000238181.7" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "LGALS8--EDARADD^ENST00000238181.11" ; transcript_name "LGALS8-201" ; transcript_support_level 5 ; transcript_type protein_coding
LGALS8--EDARADD HAVANA mRNA 2986 13449 . + . FI_gene_label "LGALS8^ENSG00000116977.19" ; ID "LGALS8--EDARADD^ENST00000238181.11" ; Parent "LGALS8--EDARADD^LGALS8^ENSG00000116977.19" ; exon_id "ENSE00003563486.1" ; exon_number 2 ; gene_id "LGALS8--EDARADD^LGALS8^ENSG00000116977.19" ; gene_name LGALS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039953.10" ; havana_transcript "OTTHUMT00000096626.3" ; hgnc_id "HGNC:6569" ; level 2 ; orig_coord_info "chr1,236526071,236526115,+" ; protein_id "ENSP00000238181.7" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "LGALS8--EDARADD^ENST00000238181.11" ; transcript_name "LGALS8-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LGALS8--EDARADD HAVANA gene 25652 34894 . + . FI_gene_label "EDARADD^ENSG00000186197.15" ; ID "LGALS8--EDARADD^EDARADD^ENSG00000186197.15" ; ccdsid "CCDS1610.1" ; exon_id "ENSE00001424242.4" ; exon_number 1 ; gene_id "LGALS8--EDARADD^EDARADD^ENSG00000186197.15" ; gene_name EDARADD ; gene_type protein_coding ; havana_gene "OTTHUMG00000039954.7" ; havana_transcript "OTTHUMT00000096368.2" ; hgnc_id "HGNC:14341" ; level 2 ; orig_coord_info "chr1,236394445,236394505,+" ; protein_id "ENSP00000335076.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "LGALS8--EDARADD^ENST00000334232.9" ; transcript_name "EDARADD-201" ; transcript_support_level 1 ; transcript_type protein_coding
LGALS8--EDARADD HAVANA mRNA 25652 34894 . + . FI_gene_label "EDARADD^ENSG00000186197.15" ; ID "LGALS8--EDARADD^ENST00000334232.9" ; Parent "LGALS8--EDARADD^EDARADD^ENSG00000186197.15" ; ccdsid "CCDS1610.1" ; exon_id "ENSE00001424242.4" ; exon_number 1 ; gene_id "LGALS8--EDARADD^EDARADD^ENSG00000186197.15" ; gene_name EDARADD ; gene_type protein_coding ; havana_gene "OTTHUMG00000039954.7" ; havana_transcript "OTTHUMT00000096368.2" ; hgnc_id "HGNC:14341" ; level 2 ; orig_coord_info "chr1,236394445,236394505,+" ; protein_id "ENSP00000335076.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "LGALS8--EDARADD^ENST00000334232.9" ; transcript_name "EDARADD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYH9--TXN2 HAVANA gene 1001 41543 . + . FI_gene_label "MYH9^ENSG00000100345.22" ; ID "MYH9--TXN2^MYH9^ENSG00000100345.22" ; ccdsid "CCDS13927.1" ; exon_id "ENSE00002732339.1" ; exon_number 2 ; gene_id "MYH9--TXN2^MYH9^ENSG00000100345.22" ; gene_name MYH9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030429.9" ; havana_transcript "OTTHUMT00000259110.4" ; hgnc_id "HGNC:7579" ; level 1 ; orig_coord_info "chr22,36348904,36349236,-" ; protein_id "ENSP00000216181.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "MYH9--TXN2^ENST00000216181.11" ; transcript_name "MYH9-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYH9--TXN2 HAVANA mRNA 1001 41543 . + . FI_gene_label "MYH9^ENSG00000100345.22" ; ID "MYH9--TXN2^ENST00000216181.11" ; Parent "MYH9--TXN2^MYH9^ENSG00000100345.22" ; ccdsid "CCDS13927.1" ; exon_id "ENSE00002732339.1" ; exon_number 2 ; gene_id "MYH9--TXN2^MYH9^ENSG00000100345.22" ; gene_name MYH9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030429.9" ; havana_transcript "OTTHUMT00000259110.4" ; hgnc_id "HGNC:7579" ; level 1 ; orig_coord_info "chr22,36348904,36349236,-" ; protein_id "ENSP00000216181.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "MYH9--TXN2^ENST00000216181.11" ; transcript_name "MYH9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYH9--TXN2 HAVANA gene 44544 49405 . + . FI_gene_label "TXN2^ENSG00000100348.10" ; ID "MYH9--TXN2^TXN2^ENSG00000100348.10" ; ccdsid "CCDS13928.1" ; exon_id "ENSE00001666349.1" ; exon_number 2 ; gene_id "MYH9--TXN2^TXN2^ENSG00000100348.10" ; gene_name TXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150596.4" ; havana_transcript "OTTHUMT00000319016.2" ; hgnc_id "HGNC:17772" ; level 2 ; orig_coord_info "chr22,36480575,36480837,-" ; protein_id "ENSP00000216185.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYH9--TXN2^ENST00000216185.7" ; transcript_name "TXN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYH9--TXN2 HAVANA mRNA 44544 49405 . + . FI_gene_label "TXN2^ENSG00000100348.10" ; ID "MYH9--TXN2^ENST00000216185.7" ; Parent "MYH9--TXN2^TXN2^ENSG00000100348.10" ; ccdsid "CCDS13928.1" ; exon_id "ENSE00001666349.1" ; exon_number 2 ; gene_id "MYH9--TXN2^TXN2^ENSG00000100348.10" ; gene_name TXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150596.4" ; havana_transcript "OTTHUMT00000319016.2" ; hgnc_id "HGNC:17772" ; level 2 ; orig_coord_info "chr22,36480575,36480837,-" ; protein_id "ENSP00000216185.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYH9--TXN2^ENST00000216185.7" ; transcript_name "TXN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCCA--CLYBL HAVANA gene 40674 51303 . + . FI_gene_label "CLYBL^ENSG00000125246.15" ; ID "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; ccdsid "CCDS32002.1" ; exon_id "ENSE00001869096.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; gene_name CLYBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017278.3" ; havana_transcript "OTTHUMT00000045613.1" ; hgnc_id "HGNC:18355" ; level 2 ; orig_coord_info "chr13,99606696,99606757,+" ; protein_id "ENSP00000342991.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PCCA--CLYBL^ENST00000339105.8" ; transcript_name "CLYBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCCA--CLYBL HAVANA mRNA 40674 51303 . + . FI_gene_label "CLYBL^ENSG00000125246.15" ; ID "PCCA--CLYBL^ENST00000339105.8" ; Parent "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; ccdsid "CCDS32002.1" ; exon_id "ENSE00001869096.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^CLYBL^ENSG00000125246.15" ; gene_name CLYBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017278.3" ; havana_transcript "OTTHUMT00000045613.1" ; hgnc_id "HGNC:18355" ; level 2 ; orig_coord_info "chr13,99606696,99606757,+" ; protein_id "ENSP00000342991.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PCCA--CLYBL^ENST00000339105.8" ; transcript_name "CLYBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCCA--CLYBL ENSEMBL gene 1001 37641 . + . FI_gene_label "PCCA^ENSG00000175198.17" ; ID "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; ccdsid "CCDS53878.1" ; exon_id "ENSE00002300882.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; gene_name PCCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000017284.13" ; hgnc_id "HGNC:8653" ; level 3 ; orig_coord_info "chr13,100089121,100089225,+" ; protein_id "ENSP00000365456.3" ; tag basic CCDS ; transcript_id "PCCA--CLYBL^ENST00000376279.7" ; transcript_name "PCCA-201" ; transcript_support_level 2 ; transcript_type protein_coding
PCCA--CLYBL ENSEMBL mRNA 1001 37641 . + . FI_gene_label "PCCA^ENSG00000175198.17" ; ID "PCCA--CLYBL^ENST00000376279.7" ; Parent "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; ccdsid "CCDS53878.1" ; exon_id "ENSE00002300882.1" ; exon_number 1 ; gene_id "PCCA--CLYBL^PCCA^ENSG00000175198.17" ; gene_name PCCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000017284.13" ; hgnc_id "HGNC:8653" ; level 3 ; orig_coord_info "chr13,100089121,100089225,+" ; protein_id "ENSP00000365456.3" ; tag basic CCDS ; transcript_id "PCCA--CLYBL^ENST00000376279.7" ; transcript_name "PCCA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PNPLA7--ARRDC1 HAVANA gene 1019 32853 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "PNPLA7--ARRDC1^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "PNPLA7--ARRDC1^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PNPLA7--ARRDC1^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
PNPLA7--ARRDC1 HAVANA mRNA 1019 32853 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "PNPLA7--ARRDC1^ENST00000277531.8" ; Parent "PNPLA7--ARRDC1^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "PNPLA7--ARRDC1^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PNPLA7--ARRDC1^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PNPLA7--ARRDC1 HAVANA gene 35856 40915 . + . FI_gene_label "ARRDC1^ENSG00000197070.14" ; ID "PNPLA7--ARRDC1^ARRDC1^ENSG00000197070.14" ; ccdsid "CCDS7049.1" ; exon_id "ENSE00001455210.3" ; exon_number 1 ; gene_id "PNPLA7--ARRDC1^ARRDC1^ENSG00000197070.14" ; gene_name ARRDC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020993.5" ; havana_transcript "OTTHUMT00000055358.2" ; hgnc_id "HGNC:28633" ; level 2 ; orig_coord_info "chr9,137605718,137605835,+" ; protein_id "ENSP00000360475.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PNPLA7--ARRDC1^ENST00000371421.9" ; transcript_name "ARRDC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PNPLA7--ARRDC1 HAVANA mRNA 35856 40915 . + . FI_gene_label "ARRDC1^ENSG00000197070.14" ; ID "PNPLA7--ARRDC1^ENST00000371421.9" ; Parent "PNPLA7--ARRDC1^ARRDC1^ENSG00000197070.14" ; ccdsid "CCDS7049.1" ; exon_id "ENSE00001455210.3" ; exon_number 1 ; gene_id "PNPLA7--ARRDC1^ARRDC1^ENSG00000197070.14" ; gene_name ARRDC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020993.5" ; havana_transcript "OTTHUMT00000055358.2" ; hgnc_id "HGNC:28633" ; level 2 ; orig_coord_info "chr9,137605718,137605835,+" ; protein_id "ENSP00000360475.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PNPLA7--ARRDC1^ENST00000371421.9" ; transcript_name "ARRDC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PNPLA7--ZMYND19 HAVANA gene 1019 32853 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "PNPLA7--ZMYND19^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "PNPLA7--ZMYND19^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PNPLA7--ZMYND19^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
PNPLA7--ZMYND19 HAVANA mRNA 1019 32853 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "PNPLA7--ZMYND19^ENST00000277531.8" ; Parent "PNPLA7--ZMYND19^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "PNPLA7--ZMYND19^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PNPLA7--ZMYND19^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PNPLA7--ZMYND19 HAVANA gene 35855 41377 . + . FI_gene_label "ZMYND19^ENSG00000165724.6" ; ID "PNPLA7--ZMYND19^ZMYND19^ENSG00000165724.6" ; ccdsid "CCDS7048.1" ; exon_id "ENSE00001300681.5" ; exon_number 1 ; gene_id "PNPLA7--ZMYND19^ZMYND19^ENSG00000165724.6" ; gene_name ZMYND19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020992.2" ; havana_transcript "OTTHUMT00000055356.2" ; hgnc_id "HGNC:21146" ; level 2 ; orig_coord_info "chr9,137590213,137590263,-" ; protein_id "ENSP00000298585.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PNPLA7--ZMYND19^ENST00000298585.3" ; transcript_name "ZMYND19-201" ; transcript_support_level 1 ; transcript_type protein_coding
PNPLA7--ZMYND19 HAVANA mRNA 35855 41377 . + . FI_gene_label "ZMYND19^ENSG00000165724.6" ; ID "PNPLA7--ZMYND19^ENST00000298585.3" ; Parent "PNPLA7--ZMYND19^ZMYND19^ENSG00000165724.6" ; ccdsid "CCDS7048.1" ; exon_id "ENSE00001300681.5" ; exon_number 1 ; gene_id "PNPLA7--ZMYND19^ZMYND19^ENSG00000165724.6" ; gene_name ZMYND19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020992.2" ; havana_transcript "OTTHUMT00000055356.2" ; hgnc_id "HGNC:21146" ; level 2 ; orig_coord_info "chr9,137590213,137590263,-" ; protein_id "ENSP00000298585.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PNPLA7--ZMYND19^ENST00000298585.3" ; transcript_name "ZMYND19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF111--MINDY2 HAVANA gene 25876 39981 . + . FI_gene_label "MINDY2^ENSG00000128923.11" ; ID "RNF111--MINDY2^MINDY2^ENSG00000128923.11" ; exon_id "ENSE00001236746.8" ; exon_number 1 ; gene_id "RNF111--MINDY2^MINDY2^ENSG00000128923.11" ; gene_name MINDY2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171983.3" ; havana_transcript "OTTHUMT00000416228.1" ; hgnc_id "HGNC:26954" ; level 2 ; orig_coord_info "chr15,58771396,58772235,+" ; protein_id "ENSP00000326194.5" ; transcript_id "RNF111--MINDY2^ENST00000316848.9" ; transcript_name "MINDY2-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
RNF111--MINDY2 HAVANA mRNA 25876 39981 . + . FI_gene_label "MINDY2^ENSG00000128923.11" ; ID "RNF111--MINDY2^ENST00000316848.9" ; Parent "RNF111--MINDY2^MINDY2^ENSG00000128923.11" ; exon_id "ENSE00001236746.8" ; exon_number 1 ; gene_id "RNF111--MINDY2^MINDY2^ENSG00000128923.11" ; gene_name MINDY2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171983.3" ; havana_transcript "OTTHUMT00000416228.1" ; hgnc_id "HGNC:26954" ; level 2 ; orig_coord_info "chr15,58771396,58772235,+" ; protein_id "ENSP00000326194.5" ; transcript_id "RNF111--MINDY2^ENST00000316848.9" ; transcript_name "MINDY2-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
RNF111--MINDY2 HAVANA gene 1001 22875 . + . FI_gene_label "RNF111^ENSG00000157450.16" ; ID "RNF111--MINDY2^RNF111^ENSG00000157450.16" ; ccdsid "CCDS10169.1" ; exon_id "ENSE00001336191.2" ; exon_number 2 ; gene_id "RNF111--MINDY2^RNF111^ENSG00000157450.16" ; gene_name RNF111 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132716.3" ; havana_transcript "OTTHUMT00000256017.2" ; hgnc_id "HGNC:17384" ; level 2 ; orig_coord_info "chr15,59030823,59031702,+" ; protein_id "ENSP00000288199.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RNF111--MINDY2^ENST00000348370.9" ; transcript_name "RNF111-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF111--MINDY2 HAVANA mRNA 1001 22875 . + . FI_gene_label "RNF111^ENSG00000157450.16" ; ID "RNF111--MINDY2^ENST00000348370.9" ; Parent "RNF111--MINDY2^RNF111^ENSG00000157450.16" ; ccdsid "CCDS10169.1" ; exon_id "ENSE00001336191.2" ; exon_number 2 ; gene_id "RNF111--MINDY2^RNF111^ENSG00000157450.16" ; gene_name RNF111 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132716.3" ; havana_transcript "OTTHUMT00000256017.2" ; hgnc_id "HGNC:17384" ; level 2 ; orig_coord_info "chr15,59030823,59031702,+" ; protein_id "ENSP00000288199.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RNF111--MINDY2^ENST00000348370.9" ; transcript_name "RNF111-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF169--POLD3 HAVANA gene 16639 34649 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "RNF169--POLD3^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "RNF169--POLD3^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--POLD3^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF169--POLD3 HAVANA mRNA 16639 34649 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "RNF169--POLD3^ENST00000263681.7" ; Parent "RNF169--POLD3^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "RNF169--POLD3^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--POLD3^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF169--POLD3 HAVANA gene 1001 13612 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "RNF169--POLD3^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "RNF169--POLD3^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--POLD3^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF169--POLD3 HAVANA mRNA 1001 13612 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "RNF169--POLD3^ENST00000299563.5" ; Parent "RNF169--POLD3^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "RNF169--POLD3^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--POLD3^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D22A--GRAMD4 HAVANA gene 1034 23197 . + . FI_gene_label "TBC1D22A^ENSG00000054611.14" ; ID "TBC1D22A--GRAMD4^TBC1D22A^ENSG00000054611.14" ; ccdsid "CCDS14078.1" ; exon_id "ENSE00001916547.2" ; exon_number 1 ; gene_id "TBC1D22A--GRAMD4^TBC1D22A^ENSG00000054611.14" ; gene_name TBC1D22A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150332.4" ; havana_transcript "OTTHUMT00000317600.4" ; hgnc_id "HGNC:1309" ; level 2 ; orig_coord_info "chr22,46762787,46762848,+" ; protein_id "ENSP00000336724.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D22A--GRAMD4^ENST00000337137.9" ; transcript_name "TBC1D22A-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D22A--GRAMD4 HAVANA mRNA 1034 23197 . + . FI_gene_label "TBC1D22A^ENSG00000054611.14" ; ID "TBC1D22A--GRAMD4^ENST00000337137.9" ; Parent "TBC1D22A--GRAMD4^TBC1D22A^ENSG00000054611.14" ; ccdsid "CCDS14078.1" ; exon_id "ENSE00001916547.2" ; exon_number 1 ; gene_id "TBC1D22A--GRAMD4^TBC1D22A^ENSG00000054611.14" ; gene_name TBC1D22A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150332.4" ; havana_transcript "OTTHUMT00000317600.4" ; hgnc_id "HGNC:1309" ; level 2 ; orig_coord_info "chr22,46762787,46762848,+" ; protein_id "ENSP00000336724.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D22A--GRAMD4^ENST00000337137.9" ; transcript_name "TBC1D22A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D22A--GRAMD4 ENSEMBL gene 29623 48178 . + . FI_gene_label "GRAMD4^ENSG00000075240.17" ; ID "TBC1D22A--GRAMD4^GRAMD4^ENSG00000075240.17" ; ccdsid "CCDS33672.1" ; exon_id "ENSE00002251052.1" ; exon_number 1 ; gene_id "TBC1D22A--GRAMD4^GRAMD4^ENSG00000075240.17" ; gene_name GRAMD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150402.4" ; hgnc_id "HGNC:29113" ; level 3 ; orig_coord_info "chr22,46626800,46626961,+" ; protein_id "ENSP00000354313.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TBC1D22A--GRAMD4^ENST00000361034.7" ; transcript_name "GRAMD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D22A--GRAMD4 ENSEMBL mRNA 29623 48178 . + . FI_gene_label "GRAMD4^ENSG00000075240.17" ; ID "TBC1D22A--GRAMD4^ENST00000361034.7" ; Parent "TBC1D22A--GRAMD4^GRAMD4^ENSG00000075240.17" ; ccdsid "CCDS33672.1" ; exon_id "ENSE00002251052.1" ; exon_number 1 ; gene_id "TBC1D22A--GRAMD4^GRAMD4^ENSG00000075240.17" ; gene_name GRAMD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150402.4" ; hgnc_id "HGNC:29113" ; level 3 ; orig_coord_info "chr22,46626800,46626961,+" ; protein_id "ENSP00000354313.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TBC1D22A--GRAMD4^ENST00000361034.7" ; transcript_name "GRAMD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WAPL--AL731569.1 HAVANA gene 1001 23782 . + . FI_gene_label "WAPL^ENSG00000062650.20" ; ID "WAPL--AL731569.1^WAPL^ENSG00000062650.20" ; ccdsid "CCDS7375.1" ; exon_id "ENSE00003287902.1" ; exon_number 2 ; gene_id "WAPL--AL731569.1^WAPL^ENSG00000062650.20" ; gene_name WAPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018651.4" ; havana_transcript "OTTHUMT00000049151.3" ; hgnc_id "HGNC:23293" ; level 2 ; orig_coord_info "chr10,86517571,86518069,-" ; protein_id "ENSP00000298767.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WAPL--AL731569.1^ENST00000298767.10" ; transcript_name "WAPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
WAPL--AL731569.1 HAVANA mRNA 1001 23782 . + . FI_gene_label "WAPL^ENSG00000062650.20" ; ID "WAPL--AL731569.1^ENST00000298767.10" ; Parent "WAPL--AL731569.1^WAPL^ENSG00000062650.20" ; ccdsid "CCDS7375.1" ; exon_id "ENSE00003287902.1" ; exon_number 2 ; gene_id "WAPL--AL731569.1^WAPL^ENSG00000062650.20" ; gene_name WAPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018651.4" ; havana_transcript "OTTHUMT00000049151.3" ; hgnc_id "HGNC:23293" ; level 2 ; orig_coord_info "chr10,86517571,86518069,-" ; protein_id "ENSP00000298767.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WAPL--AL731569.1^ENST00000298767.10" ; transcript_name "WAPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WAPL--RPL7AP8 HAVANA gene 1001 23782 . + . FI_gene_label "WAPL^ENSG00000062650.20" ; ID "WAPL--RPL7AP8^WAPL^ENSG00000062650.20" ; ccdsid "CCDS7375.1" ; exon_id "ENSE00003287902.1" ; exon_number 2 ; gene_id "WAPL--RPL7AP8^WAPL^ENSG00000062650.20" ; gene_name WAPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018651.4" ; havana_transcript "OTTHUMT00000049151.3" ; hgnc_id "HGNC:23293" ; level 2 ; orig_coord_info "chr10,86517571,86518069,-" ; protein_id "ENSP00000298767.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WAPL--RPL7AP8^ENST00000298767.10" ; transcript_name "WAPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
WAPL--RPL7AP8 HAVANA mRNA 1001 23782 . + . FI_gene_label "WAPL^ENSG00000062650.20" ; ID "WAPL--RPL7AP8^ENST00000298767.10" ; Parent "WAPL--RPL7AP8^WAPL^ENSG00000062650.20" ; ccdsid "CCDS7375.1" ; exon_id "ENSE00003287902.1" ; exon_number 2 ; gene_id "WAPL--RPL7AP8^WAPL^ENSG00000062650.20" ; gene_name WAPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018651.4" ; havana_transcript "OTTHUMT00000049151.3" ; hgnc_id "HGNC:23293" ; level 2 ; orig_coord_info "chr10,86517571,86518069,-" ; protein_id "ENSP00000298767.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WAPL--RPL7AP8^ENST00000298767.10" ; transcript_name "WAPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC004943.2--WWOX HAVANA gene 1048 11546 . + . FI_gene_label "AC004943.2^ENSG00000259768.6" ; ID "AC004943.2--WWOX^AC004943.2^ENSG00000259768.6" ; exon_id "ENSE00002650707.1" ; exon_number 1 ; gene_id "AC004943.2--WWOX^AC004943.2^ENSG00000259768.6" ; gene_name "AC004943.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172559.7" ; havana_transcript "OTTHUMT00000421937.4" ; level 2 ; orig_coord_info "chr16,72665170,72665333,+" ; tag basic ; transcript_id "AC004943.2--WWOX^ENST00000563328.4" ; transcript_name "AC004943.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC004943.2--WWOX HAVANA RNA 1048 11546 . + . FI_gene_label "AC004943.2^ENSG00000259768.6" ; ID "AC004943.2--WWOX^ENST00000563328.4" ; Parent "AC004943.2--WWOX^AC004943.2^ENSG00000259768.6" ; exon_id "ENSE00002650707.1" ; exon_number 1 ; gene_id "AC004943.2--WWOX^AC004943.2^ENSG00000259768.6" ; gene_name "AC004943.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172559.7" ; havana_transcript "OTTHUMT00000421937.4" ; level 2 ; orig_coord_info "chr16,72665170,72665333,+" ; tag basic ; transcript_id "AC004943.2--WWOX^ENST00000563328.4" ; transcript_name "AC004943.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AL669831.1--SEPTIN14 HAVANA gene 2344 8334 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "AL669831.1--SEPTIN14^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AL669831.1--SEPTIN14 HAVANA RNA 2344 8334 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "AL669831.1--SEPTIN14^ENST00000428504.2" ; Parent "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "AL669831.1--SEPTIN14^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
CREBBP--LINC02861 HAVANA gene 50605 53789 . + . FI_gene_label "LINC02861^ENSG00000262185.3" ; ID "CREBBP--LINC02861^LINC02861^ENSG00000262185.3" ; exon_id "ENSE00002665558.1" ; exon_number 1 ; gene_id "CREBBP--LINC02861^LINC02861^ENSG00000262185.3" ; gene_name LINC02861 ; gene_type lncRNA ; havana_gene "OTTHUMG00000177610.4" ; havana_transcript "OTTHUMT00000438073.2" ; hgnc_id "HGNC:54406" ; level 2 ; orig_coord_info "chr16,3946153,3946305,-" ; tag basic TAGENE ; transcript_id "CREBBP--LINC02861^ENST00000571302.2" ; transcript_name "LINC02861-201" ; transcript_support_level 2 ; transcript_type lncRNA
CREBBP--LINC02861 HAVANA RNA 50605 53789 . + . FI_gene_label "LINC02861^ENSG00000262185.3" ; ID "CREBBP--LINC02861^ENST00000571302.2" ; Parent "CREBBP--LINC02861^LINC02861^ENSG00000262185.3" ; exon_id "ENSE00002665558.1" ; exon_number 1 ; gene_id "CREBBP--LINC02861^LINC02861^ENSG00000262185.3" ; gene_name LINC02861 ; gene_type lncRNA ; havana_gene "OTTHUMG00000177610.4" ; havana_transcript "OTTHUMT00000438073.2" ; hgnc_id "HGNC:54406" ; level 2 ; orig_coord_info "chr16,3946153,3946305,-" ; tag basic TAGENE ; transcript_id "CREBBP--LINC02861^ENST00000571302.2" ; transcript_name "LINC02861-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
DDX19B--AC009060.2 HAVANA gene 21124 21229 . + . FI_gene_label "AC009060.2^ENSG00000261145.1" ; ID "DDX19B--AC009060.2^AC009060.2^ENSG00000261145.1" ; exon_id "ENSE00002615490.1" ; exon_number 1 ; gene_id "DDX19B--AC009060.2^AC009060.2^ENSG00000261145.1" ; gene_name "AC009060.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000177040.1" ; havana_transcript "OTTHUMT00000435016.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr16,70202354,70202459,+" ; tag basic ; transcript_id "DDX19B--AC009060.2^ENST00000569264.1" ; transcript_name "AC009060.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DDX19B--AC009060.2 HAVANA RNA 21124 21229 . + . FI_gene_label "AC009060.2^ENSG00000261145.1" ; ID "DDX19B--AC009060.2^ENST00000569264.1" ; Parent "DDX19B--AC009060.2^AC009060.2^ENSG00000261145.1" ; exon_id "ENSE00002615490.1" ; exon_number 1 ; gene_id "DDX19B--AC009060.2^AC009060.2^ENSG00000261145.1" ; gene_name "AC009060.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000177040.1" ; havana_transcript "OTTHUMT00000435016.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr16,70202354,70202459,+" ; tag basic ; transcript_id "DDX19B--AC009060.2^ENST00000569264.1" ; transcript_name "AC009060.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
WAPL--AL731569.1 HAVANA gene 26783 29939 . + . FI_gene_label "AL731569.1^ENSG00000227896.2" ; ID "WAPL--AL731569.1^AL731569.1^ENSG00000227896.2" ; exon_id "ENSE00001688182.1" ; exon_number 1 ; gene_id "WAPL--AL731569.1^AL731569.1^ENSG00000227896.2" ; gene_name "AL731569.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018652.2" ; havana_transcript "OTTHUMT00000049156.2" ; level 2 ; orig_coord_info "chr10,86521945,86522409,+" ; tag CAGE_supported_TSS basic ; transcript_id "WAPL--AL731569.1^ENST00000428940.2" ; transcript_name "AL731569.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
WAPL--AL731569.1 HAVANA RNA 26783 29939 . + . FI_gene_label "AL731569.1^ENSG00000227896.2" ; ID "WAPL--AL731569.1^ENST00000428940.2" ; Parent "WAPL--AL731569.1^AL731569.1^ENSG00000227896.2" ; exon_id "ENSE00001688182.1" ; exon_number 1 ; gene_id "WAPL--AL731569.1^AL731569.1^ENSG00000227896.2" ; gene_name "AL731569.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018652.2" ; havana_transcript "OTTHUMT00000049156.2" ; level 2 ; orig_coord_info "chr10,86521945,86522409,+" ; tag CAGE_supported_TSS basic ; transcript_id "WAPL--AL731569.1^ENST00000428940.2" ; transcript_name "AL731569.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
WAPL--RPL7AP8 HAVANA gene 26783 27586 . + . FI_gene_label "RPL7AP8^ENSG00000230507.5" ; ID "WAPL--RPL7AP8^RPL7AP8^ENSG00000230507.5" ; exon_id "ENSE00001926799.1" ; exon_number 1 ; gene_id "WAPL--RPL7AP8^RPL7AP8^ENSG00000230507.5" ; gene_name RPL7AP8 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000018653.1" ; havana_transcript "OTTHUMT00000049157.1" ; hgnc_id "HGNC:23738" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr10,86630825,86631628,-" ; tag pseudo_consens basic ; transcript_id "WAPL--RPL7AP8^ENST00000481963.1" ; transcript_name "RPL7AP8-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
WAPL--RPL7AP8 HAVANA RNA 26783 27586 . + . FI_gene_label "RPL7AP8^ENSG00000230507.5" ; ID "WAPL--RPL7AP8^ENST00000481963.1" ; Parent "WAPL--RPL7AP8^RPL7AP8^ENSG00000230507.5" ; exon_id "ENSE00001926799.1" ; exon_number 1 ; gene_id "WAPL--RPL7AP8^RPL7AP8^ENSG00000230507.5" ; gene_name RPL7AP8 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000018653.1" ; havana_transcript "OTTHUMT00000049157.1" ; hgnc_id "HGNC:23738" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr10,86630825,86631628,-" ; tag pseudo_consens basic ; transcript_id "WAPL--RPL7AP8^ENST00000481963.1" ; transcript_name "RPL7AP8-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
403 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
971 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 35 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
Lets remove isoform ATP13A4--OPA1^ENST00000646699.1
1 identical isoforms removed
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------ End checks (done in 0 second) ------
GFF3 file parsed