Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/a5d766ffdf44586796da3b51796173/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/fb7870ee1eae3e89c9189910ff28ff/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/fb7870ee1eae3e89c9189910ff28ff/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/a5d766ffdf44586796da3b51796173/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/dcd802fd407b93f657d3f0a5737708/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.kBcBqgcemj/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary
-sample contains 294433401 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir  -J /tmp/nxf.kBcBqgcemj/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Chimeric.out.junction  -O /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.kBcBqgcemj/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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[2600000], rate=48297.21/min -building interval tree based on /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2570000], rate=41619.43/min 
[2580000], rate=41691.35/min -building interval tree based on /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=15384.62/min 
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[2560000], rate=36209.34/min 
[2570000], rate=36239.72/min -building interval tree based on /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=66666.67/min 
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[2590000], rate=34827.43/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

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 5347826.09 reads per min processed...  
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 5265306.12 reads per min processed...  
 5280000.00 reads per min processed...  
 5192307.69 reads per min processed...  
 5207547.17 reads per min processed...  
 5222222.22 reads per min processed...  
 5236363.64 reads per min processed...  
 5157894.74 reads per min processed...  
 5172413.79 reads per min processed...  
 5186440.68 reads per min processed...  
 5200000.00 reads per min processed...  
 5213114.75 reads per min processed...  
 5311475.41 reads per min processed...  
 5322580.65 reads per min processed...  
 5419354.84 reads per min processed...  
 5516129.03 reads per min processed...  
 5523809.52 reads per min processed...  
 5619047.62 reads per min processed...  
 5625000.00 reads per min processed...  
 5630769.23 reads per min processed...  
 5636363.64 reads per min processed...  
 5558823.53 reads per min processed...  
 5565217.39 reads per min processed...  
 5571428.57 reads per min processed...  
 5500000.00 reads per min processed...  
 5506849.32 reads per min processed...  
 5513513.51 reads per min processed...  
 5520000.00 reads per min processed...  
 5454545.45 reads per min processed...  
 5461538.46 reads per min processed...  
 5468354.43 reads per min processed...  
 5407407.41 reads per min processed...  
 5414634.15 reads per min processed...  
 5421686.75 reads per min processed...  
 5428571.43 reads per min processed...  
 5372093.02 reads per min processed...  
 5379310.34 reads per min processed...  
 5386363.64 reads per min processed...  
 5393258.43 reads per min processed...  
 5340659.34 reads per min processed...  
 5347826.09 reads per min processed...  
 5354838.71 reads per min processed...  
 5361702.13 reads per min processed...  
 5312500.00 reads per min processed...  
 5319587.63 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.kBcBqgcemj/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -313004.271945
EM: Round [1] log likelihood: -312788.174881
EM: Round [2] log likelihood: -312707.297570
EM: Round [3] log likelihood: -312668.899772
EM: Round [4] log likelihood: -312648.712746
EM: Round [5] log likelihood: -312637.483284
EM: Round [6] log likelihood: -312630.926570
EM: Round [7] log likelihood: -312626.898229
EM: Round [8] log likelihood: -312624.288681
EM: Round [9] log likelihood: -312622.508322
EM: Round [10] log likelihood: -312621.234219
EM: Round [11] log likelihood: -312620.283291
EM: Round [12] log likelihood: -312619.547812
EM: Round [13] log likelihood: -312618.961925
EM: Round [14] log likelihood: -312618.483796
EM: Round [15] log likelihood: -312618.085858
EM: Round [16] log likelihood: -312617.749302
EM: Round [17] log likelihood: -312617.460877
EM: Round [18] log likelihood: -312617.210977
EM: Round [19] log likelihood: -312616.992458
EM: Round [20] log likelihood: -312616.799882
EM: Round [21] log likelihood: -312616.629031
EM: Round [22] log likelihood: -312616.476569
EM: Round [23] log likelihood: -312616.339824
EM: Round [24] log likelihood: -312616.216619
EM: Round [25] log likelihood: -312616.105166
EM: Round [26] log likelihood: -312616.003975
EM: Round [27] log likelihood: -312615.911796
EM: Round [28] log likelihood: -312615.827573
EM: Round [29] log likelihood: -312615.750402
EM: Round [30] log likelihood: -312615.679512
EM: Round [31] log likelihood: -312615.614233
EM: Round [32] log likelihood: -312615.553987
EM: Round [33] log likelihood: -312615.498267
EM: Round [34] log likelihood: -312615.446632
EM: Round [35] log likelihood: -312615.398694
EM: Round [36] log likelihood: -312615.354108
EM: Round [37] log likelihood: -312615.312571
EM: Round [38] log likelihood: -312615.273815
EM: Round [39] log likelihood: -312615.237598
EM: Round [40] log likelihood: -312615.203706
EM: Round [41] log likelihood: -312615.171948
EM: Round [42] log likelihood: -312615.142150
EM: Round [43] log likelihood: -312615.114158
EM: Round [44] log likelihood: -312615.087833
EM: Round [45] log likelihood: -312615.063046
EM: Round [46] log likelihood: -312615.039685
EM: Round [47] log likelihood: -312615.017646
EM: Round [48] log likelihood: -312614.996833
EM: Round [49] log likelihood: -312614.977160
EM: Round [50] log likelihood: -312614.958550
EM: Round [51] log likelihood: -312614.940930
EM: Round [52] log likelihood: -312614.924235
EM: Round [53] log likelihood: -312614.908403
EM: Round [54] log likelihood: -312614.893381
EM: Round [55] log likelihood: -312614.879115
EM: Round [56] log likelihood: -312614.865561
EM: Round [57] log likelihood: -312614.852673
EM: Round [58] log likelihood: -312614.840413
EM: Round [59] log likelihood: -312614.828742
EM: Round [60] log likelihood: -312614.817627
EM: Round [61] log likelihood: -312614.807035
EM: Round [62] log likelihood: -312614.796936
EM: Round [63] log likelihood: -312614.787304
EM: Round [64] log likelihood: -312614.778112
EM: Round [65] log likelihood: -312614.769335
EM: Round [66] log likelihood: -312614.760953
EM: Round [67] log likelihood: -312614.752943
EM: Round [68] log likelihood: -312614.745287
EM: Round [69] log likelihood: -312614.737965
EM: Round [70] log likelihood: -312614.730961
EM: Round [71] log likelihood: -312614.724258
EM: Round [72] log likelihood: -312614.717842
EM: Round [73] log likelihood: -312614.711698
EM: Round [74] log likelihood: -312614.705812
EM: Round [75] log likelihood: -312614.700172
EM: Round [76] log likelihood: -312614.694766
EM: Round [77] log likelihood: -312614.689583
EM: Round [78] log likelihood: -312614.684613
EM: Round [79] log likelihood: -312614.679844
EM: Round [80] log likelihood: -312614.675269
EM: Round [81] log likelihood: -312614.670877
EM: Round [82] log likelihood: -312614.666661
EM: Round [83] log likelihood: -312614.662612
EM: Round [84] log likelihood: -312614.658723
EM: Round [85] log likelihood: -312614.654987
EM: Round [86] log likelihood: -312614.651397
EM: Round [87] log likelihood: -312614.647947
EM: Round [88] log likelihood: -312614.644629
EM: Round [89] log likelihood: -312614.641440
EM: Round [90] log likelihood: -312614.638372
EM: Round [91] log likelihood: -312614.635421
EM: Round [92] log likelihood: -312614.632582
EM: Round [93] log likelihood: -312614.629850
EM: Round [94] log likelihood: -312614.627221
EM: Round [95] log likelihood: -312614.624689
EM: Round [96] log likelihood: -312614.622252
EM: Round [97] log likelihood: -312614.619905
EM: Round [98] log likelihood: -312614.617645
EM: Round [99] log likelihood: -312614.615467
EM: Round [100] log likelihood: -312614.613369
EM: Round [101] log likelihood: -312614.611348
EM: Round [102] log likelihood: -312614.609399
EM: Round [103] log likelihood: -312614.607521
EM: Round [104] log likelihood: -312614.605711
EM: Round [105] log likelihood: -312614.603965
EM: Round [106] log likelihood: -312614.602281
EM: Round [107] log likelihood: -312614.600657
EM: Round [108] log likelihood: -312614.599091
EM: Round [109] log likelihood: -312614.597580
EM: Round [110] log likelihood: -312614.596122
EM: Round [111] log likelihood: -312614.594715
EM: Round [112] log likelihood: -312614.593357
EM: Round [113] log likelihood: -312614.592046
EM: Round [114] log likelihood: -312614.590780
EM: Round [115] log likelihood: -312614.589559
EM: Round [116] log likelihood: -312614.588379
EM: Round [117] log likelihood: -312614.587239
EM: Round [118] log likelihood: -312614.586138
EM: Round [119] log likelihood: -312614.585075
EM: Round [120] log likelihood: -312614.584048
EM: Round [121] log likelihood: -312614.583055
EM: Round [122] log likelihood: -312614.582096
EM: Round [123] log likelihood: -312614.581169
EM: Round [124] log likelihood: -312614.580273
EM: Round [125] log likelihood: -312614.579407
EM: Round [126] log likelihood: -312614.578570
EM: Round [127] log likelihood: -312614.577760
EM: Round [128] log likelihood: -312614.576977
EM: Round [129] log likelihood: -312614.576220
EM: Round [130] log likelihood: -312614.575488
EM: Round [131] log likelihood: -312614.574779
EM: Round [132] log likelihood: -312614.574094
EM: Round [133] log likelihood: -312614.573431
EM: Round [134] log likelihood: -312614.572790
EM: Round [135] log likelihood: -312614.572169
EM: Round [136] log likelihood: -312614.571568
EM: Round [137] log likelihood: -312614.570986
EM: Round [138] log likelihood: -312614.570423
EM: Round [139] log likelihood: -312614.569878
EM: Round [140] log likelihood: -312614.569350
EM: Round [141] log likelihood: -312614.568839
EM: Round [142] log likelihood: -312614.568345
EM: Round [143] log likelihood: -312614.567865
EM: Round [144] log likelihood: -312614.567401
EM: Round [145] log likelihood: -312614.566952
EM: Round [146] log likelihood: -312614.566516
EM: Round [147] log likelihood: -312614.566094
EM: Round [148] log likelihood: -312614.565685
EM: Round [149] log likelihood: -312614.565289
EM: Round [150] log likelihood: -312614.564905
EM: Round [151] log likelihood: -312614.564533
EM: Round [152] log likelihood: -312614.564172
EM: Round [153] log likelihood: -312614.563822
EM: Round [154] log likelihood: -312614.563483
EM: Round [155] log likelihood: -312614.563155
EM: Round [156] log likelihood: -312614.562836
EM: Round [157] log likelihood: -312614.562527
EM: Round [158] log likelihood: -312614.562227
EM: Round [159] log likelihood: -312614.561936
EM: Round [160] log likelihood: -312614.561654
EM: Round [161] log likelihood: -312614.561381
EM: Round [162] log likelihood: -312614.561115
EM: Round [163] log likelihood: -312614.560858
EM: Round [164] log likelihood: -312614.560608
EM: Round [165] log likelihood: -312614.560366
EM: Round [166] log likelihood: -312614.560130
EM: Round [167] log likelihood: -312614.559902
EM: Round [168] log likelihood: -312614.559680
EM: Round [169] log likelihood: -312614.559465
EM: Round [170] log likelihood: -312614.559256
EM: Round [171] log likelihood: -312614.559053
EM: Round [172] log likelihood: -312614.558856
EM: Round [173] log likelihood: -312614.558665
EM: Round [174] log likelihood: -312614.558479
EM: Round [175] log likelihood: -312614.558299
EM: Round [176] log likelihood: -312614.558124
EM: Round [177] log likelihood: -312614.557954
EM: Round [178] log likelihood: -312614.557788
EM: Round [179] log likelihood: -312614.557628
EM: Round [180] log likelihood: -312614.557472
EM: Round [181] log likelihood: -312614.557320
EM: Round [182] log likelihood: -312614.557173
EM: Round [183] log likelihood: -312614.557030
EM: Round [184] log likelihood: -312614.556890
EM: Round [185] log likelihood: -312614.556755
EM: Round [186] log likelihood: -312614.556624
EM: Round [187] log likelihood: -312614.556496
EM: Round [188] log likelihood: -312614.556372
EM: Round [189] log likelihood: -312614.556251
EM: Round [190] log likelihood: -312614.556133
EM: Round [191] log likelihood: -312614.556019
EM: Round [192] log likelihood: -312614.555908
EM: Round [193] log likelihood: -312614.555800
EM: Round [194] log likelihood: -312614.555695
EM: Round [195] log likelihood: -312614.555592
EM: Round [196] log likelihood: -312614.555493
EM: Stopping iterations at round 196 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -312637.120854
EM: Round [1] log likelihood: -312451.229260
EM: Round [2] log likelihood: -312384.948216
EM: Round [3] log likelihood: -312354.513991
EM: Round [4] log likelihood: -312338.848034
EM: Round [5] log likelihood: -312330.279339
EM: Round [6] log likelihood: -312325.367432
EM: Round [7] log likelihood: -312322.415605
EM: Round [8] log likelihood: -312320.551471
EM: Round [9] log likelihood: -312319.313637
EM: Round [10] log likelihood: -312318.451040
EM: Round [11] log likelihood: -312317.822744
EM: Round [12] log likelihood: -312317.346952
EM: Round [13] log likelihood: -312316.974514
EM: Round [14] log likelihood: -312316.674835
EM: Round [15] log likelihood: -312316.428189
EM: Round [16] log likelihood: -312316.221417
EM: Round [17] log likelihood: -312316.045454
EM: Round [18] log likelihood: -312315.893860
EM: Round [19] log likelihood: -312315.761933
EM: Round [20] log likelihood: -312315.646148
EM: Round [21] log likelihood: -312315.543807
EM: Round [22] log likelihood: -312315.452796
EM: Round [23] log likelihood: -312315.371435
EM: Round [24] log likelihood: -312315.298363
EM: Round [25] log likelihood: -312315.232463
EM: Round [26] log likelihood: -312315.172809
EM: Round [27] log likelihood: -312315.118625
EM: Round [28] log likelihood: -312315.069252
EM: Round [29] log likelihood: -312315.024131
EM: Round [30] log likelihood: -312314.982780
EM: Round [31] log likelihood: -312314.944786
EM: Round [32] log likelihood: -312314.909788
EM: Round [33] log likelihood: -312314.877473
EM: Round [34] log likelihood: -312314.847567
EM: Round [35] log likelihood: -312314.819831
EM: Round [36] log likelihood: -312314.794052
EM: Round [37] log likelihood: -312314.770044
EM: Round [38] log likelihood: -312314.747643
EM: Round [39] log likelihood: -312314.726702
EM: Round [40] log likelihood: -312314.707091
EM: Round [41] log likelihood: -312314.688695
EM: Round [42] log likelihood: -312314.671411
EM: Round [43] log likelihood: -312314.655146
EM: Round [44] log likelihood: -312314.639817
EM: Round [45] log likelihood: -312314.625350
EM: Round [46] log likelihood: -312314.611679
EM: Round [47] log likelihood: -312314.598743
EM: Round [48] log likelihood: -312314.586488
EM: Round [49] log likelihood: -312314.574865
EM: Round [50] log likelihood: -312314.563828
EM: Round [51] log likelihood: -312314.553339
EM: Round [52] log likelihood: -312314.543359
EM: Round [53] log likelihood: -312314.533855
EM: Round [54] log likelihood: -312314.524797
EM: Round [55] log likelihood: -312314.516157
EM: Round [56] log likelihood: -312314.507908
EM: Round [57] log likelihood: -312314.500028
EM: Round [58] log likelihood: -312314.492494
EM: Round [59] log likelihood: -312314.485287
EM: Round [60] log likelihood: -312314.478389
EM: Round [61] log likelihood: -312314.471781
EM: Round [62] log likelihood: -312314.465448
EM: Round [63] log likelihood: -312314.459376
EM: Round [64] log likelihood: -312314.453551
EM: Round [65] log likelihood: -312314.447961
EM: Round [66] log likelihood: -312314.442593
EM: Round [67] log likelihood: -312314.437436
EM: Round [68] log likelihood: -312314.432480
EM: Round [69] log likelihood: -312314.427716
EM: Round [70] log likelihood: -312314.423134
EM: Round [71] log likelihood: -312314.418726
EM: Round [72] log likelihood: -312314.414484
EM: Round [73] log likelihood: -312314.410401
EM: Round [74] log likelihood: -312314.406469
EM: Round [75] log likelihood: -312314.402681
EM: Round [76] log likelihood: -312314.399032
EM: Round [77] log likelihood: -312314.395515
EM: Round [78] log likelihood: -312314.392125
EM: Round [79] log likelihood: -312314.388856
EM: Round [80] log likelihood: -312314.385703
EM: Round [81] log likelihood: -312314.382662
EM: Round [82] log likelihood: -312314.379729
EM: Round [83] log likelihood: -312314.376897
EM: Round [84] log likelihood: -312314.374165
EM: Round [85] log likelihood: -312314.371527
EM: Round [86] log likelihood: -312314.368979
EM: Round [87] log likelihood: -312314.366520
EM: Round [88] log likelihood: -312314.364144
EM: Round [89] log likelihood: -312314.361849
EM: Round [90] log likelihood: -312314.359631
EM: Round [91] log likelihood: -312314.357489
EM: Round [92] log likelihood: -312314.355418
EM: Round [93] log likelihood: -312314.353416
EM: Round [94] log likelihood: -312314.351481
EM: Round [95] log likelihood: -312314.349610
EM: Round [96] log likelihood: -312314.347801
EM: Round [97] log likelihood: -312314.346051
EM: Round [98] log likelihood: -312314.344359
EM: Round [99] log likelihood: -312314.342722
EM: Round [100] log likelihood: -312314.341138
EM: Round [101] log likelihood: -312314.339606
EM: Round [102] log likelihood: -312314.338123
EM: Round [103] log likelihood: -312314.336689
EM: Round [104] log likelihood: -312314.335300
EM: Round [105] log likelihood: -312314.333956
EM: Round [106] log likelihood: -312314.332654
EM: Round [107] log likelihood: -312314.331395
EM: Round [108] log likelihood: -312314.330175
EM: Round [109] log likelihood: -312314.328994
EM: Round [110] log likelihood: -312314.327850
EM: Round [111] log likelihood: -312314.326742
EM: Round [112] log likelihood: -312314.325669
EM: Round [113] log likelihood: -312314.324629
EM: Round [114] log likelihood: -312314.323622
EM: Round [115] log likelihood: -312314.322647
EM: Round [116] log likelihood: -312314.321702
EM: Round [117] log likelihood: -312314.320786
EM: Round [118] log likelihood: -312314.319898
EM: Round [119] log likelihood: -312314.319038
EM: Round [120] log likelihood: -312314.318204
EM: Round [121] log likelihood: -312314.317396
EM: Round [122] log likelihood: -312314.316612
EM: Round [123] log likelihood: -312314.315853
EM: Round [124] log likelihood: -312314.315116
EM: Round [125] log likelihood: -312314.314402
EM: Round [126] log likelihood: -312314.313710
EM: Round [127] log likelihood: -312314.313039
EM: Round [128] log likelihood: -312314.312388
EM: Round [129] log likelihood: -312314.311756
EM: Round [130] log likelihood: -312314.311144
EM: Round [131] log likelihood: -312314.310550
EM: Round [132] log likelihood: -312314.309973
EM: Round [133] log likelihood: -312314.309414
EM: Round [134] log likelihood: -312314.308872
EM: Round [135] log likelihood: -312314.308345
EM: Round [136] log likelihood: -312314.307835
EM: Round [137] log likelihood: -312314.307339
EM: Round [138] log likelihood: -312314.306858
EM: Round [139] log likelihood: -312314.306391
EM: Round [140] log likelihood: -312314.305938
EM: Round [141] log likelihood: -312314.305498
EM: Round [142] log likelihood: -312314.305072
EM: Round [143] log likelihood: -312314.304657
EM: Round [144] log likelihood: -312314.304255
EM: Round [145] log likelihood: -312314.303864
EM: Round [146] log likelihood: -312314.303485
EM: Round [147] log likelihood: -312314.303117
EM: Round [148] log likelihood: -312314.302759
EM: Round [149] log likelihood: -312314.302412
EM: Round [150] log likelihood: -312314.302075
EM: Round [151] log likelihood: -312314.301747
EM: Round [152] log likelihood: -312314.301429
EM: Round [153] log likelihood: -312314.301120
EM: Round [154] log likelihood: -312314.300820
EM: Round [155] log likelihood: -312314.300528
EM: Round [156] log likelihood: -312314.300245
EM: Round [157] log likelihood: -312314.299969
EM: Round [158] log likelihood: -312314.299702
EM: Round [159] log likelihood: -312314.299442
EM: Round [160] log likelihood: -312314.299189
EM: Round [161] log likelihood: -312314.298944
EM: Round [162] log likelihood: -312314.298705
EM: Round [163] log likelihood: -312314.298473
EM: Round [164] log likelihood: -312314.298248
EM: Round [165] log likelihood: -312314.298029
EM: Round [166] log likelihood: -312314.297816
EM: Round [167] log likelihood: -312314.297609
EM: Round [168] log likelihood: -312314.297407
EM: Round [169] log likelihood: -312314.297212
EM: Round [170] log likelihood: -312314.297021
EM: Round [171] log likelihood: -312314.296836
EM: Round [172] log likelihood: -312314.296656
EM: Round [173] log likelihood: -312314.296481
EM: Round [174] log likelihood: -312314.296311
EM: Round [175] log likelihood: -312314.296145
EM: Round [176] log likelihood: -312314.295984
EM: Round [177] log likelihood: -312314.295828
EM: Round [178] log likelihood: -312314.295675
EM: Round [179] log likelihood: -312314.295527
EM: Round [180] log likelihood: -312314.295383
EM: Round [181] log likelihood: -312314.295242
EM: Round [182] log likelihood: -312314.295106
EM: Round [183] log likelihood: -312314.294973
EM: Round [184] log likelihood: -312314.294844
EM: Round [185] log likelihood: -312314.294718
EM: Round [186] log likelihood: -312314.294595
EM: Round [187] log likelihood: -312314.294476
EM: Round [188] log likelihood: -312314.294360
EM: Round [189] log likelihood: -312314.294247
EM: Round [190] log likelihood: -312314.294137
EM: Round [191] log likelihood: -312314.294030
EM: Round [192] log likelihood: -312314.293926
EM: Round [193] log likelihood: -312314.293824
EM: Round [194] log likelihood: -312314.293725
EM: Stopping iterations at round 194 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 294433401 > /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir > /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir --annotate /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir
-done, see /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 2447, filtered: 12440)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.kBcBqgcemj/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.kBcBqgcemj/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [ENSG00000287882.1]
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WARNING, no entry stored in dbm for [ENSG00000214243.3]
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WARNING, no entry stored in dbm for [ENSG00000282987.1]
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WARNING, no entry stored in dbm for [ENSG00000272024.1]
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WARNING, no entry stored in dbm for [ENSG00000214135.8]
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WARNING, no entry stored in dbm for [ENSG00000236990.1]
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WARNING, no entry stored in dbm for [ENSG00000219682.4]
WARNING, no entry stored in dbm for [ENSG00000279818.1]
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WARNING, no entry stored in dbm for [ENSG00000223705.9]
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WARNING, no entry stored in dbm for [ENSG00000213104.3]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000256581.1]
WARNING, no entry stored in dbm for [ENSG00000280693.2]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000234226.5]
WARNING, no entry stored in dbm for [ENSG00000235547.3]
WARNING, no entry stored in dbm for [ENSG00000185332.8]
WARNING, no entry stored in dbm for [ENSG00000231898.9]
WARNING, no entry stored in dbm for [ENSG00000288549.1]
WARNING, no entry stored in dbm for [ENSG00000234936.1]
WARNING, no entry stored in dbm for [ENSG00000235759.1]
WARNING, no entry stored in dbm for [ENSG00000256625.1]
WARNING, no entry stored in dbm for [ENSG00000258471.2]
WARNING, no entry stored in dbm for [ENSG00000258479.6]
WARNING, no entry stored in dbm for [ENSG00000267686.2]
WARNING, no entry stored in dbm for [ENSG00000267532.5]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000203709.12]
WARNING, no entry stored in dbm for [ENSG00000277385.1]
WARNING, no entry stored in dbm for [ENSG00000244625.7]
WARNING, no entry stored in dbm for [ENSG00000230319.1]
WARNING, no entry stored in dbm for [ENSG00000226277.2]
WARNING, no entry stored in dbm for [ENSG00000286619.1]
WARNING, no entry stored in dbm for [ENSG00000215424.10]
WARNING, no entry stored in dbm for [ENSG00000248697.1]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000274642.1]
WARNING, no entry stored in dbm for [ENSG00000214070.3]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000271978.1]
WARNING, no entry stored in dbm for [ENSG00000258130.8]
WARNING, no entry stored in dbm for [ENSG00000227115.8]
WARNING, no entry stored in dbm for [ENSG00000266504.1]
WARNING, no entry stored in dbm for [ENSG00000287089.1]
WARNING, no entry stored in dbm for [ENSG00000254111.3]
WARNING, no entry stored in dbm for [ENSG00000234476.3]
WARNING, no entry stored in dbm for [ENSG00000175779.4]
WARNING, no entry stored in dbm for [ENSG00000215244.3]
WARNING, no entry stored in dbm for [ENSG00000259719.6]
WARNING, no entry stored in dbm for [ENSG00000249699.1]
WARNING, no entry stored in dbm for [ENSG00000204650.14]
WARNING, no entry stored in dbm for [ENSG00000261241.7]
WARNING, no entry stored in dbm for [ENSG00000250127.1]
WARNING, no entry stored in dbm for [ENSG00000253490.5]
WARNING, no entry stored in dbm for [ENSG00000241696.2]
WARNING, no entry stored in dbm for [ENSG00000223826.1]
WARNING, no entry stored in dbm for [ENSG00000223956.3]
WARNING, no entry stored in dbm for [ENSG00000275852.1]
WARNING, no entry stored in dbm for [ENSG00000232679.2]
WARNING, no entry stored in dbm for [ENSG00000227508.6]
WARNING, no entry stored in dbm for [ENSG00000198685.4]
WARNING, no entry stored in dbm for [ENSG00000231422.2]
WARNING, no entry stored in dbm for [ENSG00000254562.7]
WARNING, no entry stored in dbm for [ENSG00000233973.7]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000233723.9]
WARNING, no entry stored in dbm for [ENSG00000236700.6]
WARNING, no entry stored in dbm for [ENSG00000235703.6]
WARNING, no entry stored in dbm for [ENSG00000228221.6]
WARNING, no entry stored in dbm for [ENSG00000233237.8]
WARNING, no entry stored in dbm for [ENSG00000153363.13]
WARNING, no entry stored in dbm for [ENSG00000232117.2]
WARNING, no entry stored in dbm for [ENSG00000232803.1]
WARNING, no entry stored in dbm for [ENSG00000223768.2]
WARNING, no entry stored in dbm for [ENSG00000231721.7]
WARNING, no entry stored in dbm for [ENSG00000270103.3]
WARNING, no entry stored in dbm for [ENSG00000254560.6]
WARNING, no entry stored in dbm for [ENSG00000255815.3]
WARNING, no entry stored in dbm for [ENSG00000229222.1]
WARNING, no entry stored in dbm for [ENSG00000257125.1]
WARNING, no entry stored in dbm for [ENSG00000231203.1]
WARNING, no entry stored in dbm for [ENSG00000235944.8]
WARNING, no entry stored in dbm for [ENSG00000271615.1]
WARNING, no entry stored in dbm for [ENSG00000234902.6]
WARNING, no entry stored in dbm for [ENSG00000233652.1]
WARNING, no entry stored in dbm for [ENSG00000204581.3]
WARNING, no entry stored in dbm for [ENSG00000235499.1]
WARNING, no entry stored in dbm for [ENSG00000197536.11]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000237720.2]
WARNING, no entry stored in dbm for [ENSG00000275719.1]
WARNING, no entry stored in dbm for [ENSG00000273110.1]
WARNING, no entry stored in dbm for [ENSG00000286215.1]
WARNING, no entry stored in dbm for [ENSG00000235731.3]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000218426.5]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000261303.6]
WARNING, no entry stored in dbm for [ENSG00000242147.3]
WARNING, no entry stored in dbm for [ENSG00000285700.1]
WARNING, no entry stored in dbm for [ENSG00000243188.1]
WARNING, no entry stored in dbm for [ENSG00000229251.3]
WARNING, no entry stored in dbm for [ENSG00000261620.1]
WARNING, no entry stored in dbm for [ENSG00000227259.2]
WARNING, no entry stored in dbm for [ENSG00000259722.2]
WARNING, no entry stored in dbm for [ENSG00000230795.3]
WARNING, no entry stored in dbm for [ENSG00000244675.2]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000259845.1]
WARNING, no entry stored in dbm for [ENSG00000228022.6]
WARNING, no entry stored in dbm for [ENSG00000271491.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000260927.2]
WARNING, no entry stored in dbm for [ENSG00000206159.11]
WARNING, no entry stored in dbm for [ENSG00000232226.2]
WARNING, no entry stored in dbm for [ENSG00000254838.5]
WARNING, no entry stored in dbm for [ENSG00000237161.4]
WARNING, no entry stored in dbm for [ENSG00000213661.3]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000175676.15]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000238105.7]
WARNING, no entry stored in dbm for [ENSG00000257489.6]
WARNING, no entry stored in dbm for [ENSG00000287808.1]
WARNING, no entry stored in dbm for [ENSG00000254131.1]
WARNING, no entry stored in dbm for [ENSG00000228376.3]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000244625.7]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000237877.7]
WARNING, no entry stored in dbm for [ENSG00000149531.15]
WARNING, no entry stored in dbm for [ENSG00000234984.1]
WARNING, no entry stored in dbm for [ENSG00000286054.1]
WARNING, no entry stored in dbm for [ENSG00000223695.1]
WARNING, no entry stored in dbm for [ENSG00000244097.1]
WARNING, no entry stored in dbm for [ENSG00000261183.5]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000241011.1]
WARNING, no entry stored in dbm for [ENSG00000226777.7]
WARNING, no entry stored in dbm for [ENSG00000244055.2]
WARNING, no entry stored in dbm for [ENSG00000234709.2]
WARNING, no entry stored in dbm for [ENSG00000256995.8]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000233847.1]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000287566.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000229018.5]
WARNING, no entry stored in dbm for [ENSG00000213140.3]
WARNING, no entry stored in dbm for [ENSG00000254185.1]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000278913.1]
WARNING, no entry stored in dbm for [ENSG00000262154.1]
WARNING, no entry stored in dbm for [ENSG00000266563.1]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000250473.1]
WARNING, no entry stored in dbm for [ENSG00000233178.7]
WARNING, no entry stored in dbm for [ENSG00000176584.18]
WARNING, no entry stored in dbm for [ENSG00000243323.7]
WARNING, no entry stored in dbm for [ENSG00000245864.3]
WARNING, no entry stored in dbm for [ENSG00000232354.8]
WARNING, no entry stored in dbm for [ENSG00000273032.3]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000254670.1]
WARNING, no entry stored in dbm for [ENSG00000231890.8]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000267712.6]
WARNING, no entry stored in dbm for [ENSG00000228329.3]
WARNING, no entry stored in dbm for [ENSG00000248932.6]
WARNING, no entry stored in dbm for [ENSG00000278903.3]
WARNING, no entry stored in dbm for [ENSG00000276077.4]
WARNING, no entry stored in dbm for [ENSG00000259295.6]
WARNING, no entry stored in dbm for [ENSG00000284380.1]
WARNING, no entry stored in dbm for [ENSG00000100058.12]
WARNING, no entry stored in dbm for [ENSG00000285690.1]
WARNING, no entry stored in dbm for [ENSG00000274387.1]
WARNING, no entry stored in dbm for [ENSG00000213025.2]
WARNING, no entry stored in dbm for [ENSG00000253418.1]
WARNING, no entry stored in dbm for [ENSG00000226722.4]
WARNING, no entry stored in dbm for [ENSG00000253205.6]
WARNING, no entry stored in dbm for [ENSG00000254376.2]
WARNING, no entry stored in dbm for [ENSG00000228065.11]
WARNING, no entry stored in dbm for [ENSG00000214748.2]
WARNING, no entry stored in dbm for [ENSG00000213293.4]
WARNING, no entry stored in dbm for [ENSG00000234661.2]
WARNING, no entry stored in dbm for [ENSG00000227617.9]
WARNING, no entry stored in dbm for [ENSG00000242779.7]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000275110.1]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000245750.10]
WARNING, no entry stored in dbm for [ENSG00000220635.2]
WARNING, no entry stored in dbm for [ENSG00000272168.8]
WARNING, no entry stored in dbm for [ENSG00000249375.8]
WARNING, no entry stored in dbm for [ENSG00000249669.10]
WARNING, no entry stored in dbm for [ENSG00000230630.5]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000200972.1]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000136275.10]
WARNING, no entry stored in dbm for [ENSG00000259319.1]
WARNING, no entry stored in dbm for [ENSG00000188511.12]
WARNING, no entry stored in dbm for [ENSG00000185710.9]
WARNING, no entry stored in dbm for [ENSG00000225883.2]
WARNING, no entry stored in dbm for [ENSG00000245573.9]
WARNING, no entry stored in dbm for [ENSG00000224861.1]
WARNING, no entry stored in dbm for [ENSG00000255750.6]
WARNING, no entry stored in dbm for [ENSG00000286891.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000202538.1]
WARNING, no entry stored in dbm for [ENSG00000200795.1]
WARNING, no entry stored in dbm for [ENSG00000226835.3]
WARNING, no entry stored in dbm for [ENSG00000226835.3]
WARNING, no entry stored in dbm for [ENSG00000214293.9]
WARNING, no entry stored in dbm for [ENSG00000255284.2]
WARNING, no entry stored in dbm for [ENSG00000288393.1]
WARNING, no entry stored in dbm for [ENSG00000255449.1]
WARNING, no entry stored in dbm for [ENSG00000257038.1]
WARNING, no entry stored in dbm for [ENSG00000277572.1]
WARNING, no entry stored in dbm for [ENSG00000287285.1]
WARNING, no entry stored in dbm for [ENSG00000284128.1]
WARNING, no entry stored in dbm for [ENSG00000234353.2]
WARNING, no entry stored in dbm for [ENSG00000224309.7]
WARNING, no entry stored in dbm for [ENSG00000225978.3]
WARNING, no entry stored in dbm for [ENSG00000237879.1]
WARNING, no entry stored in dbm for [ENSG00000287683.1]
WARNING, no entry stored in dbm for [ENSG00000232295.7]
WARNING, no entry stored in dbm for [ENSG00000240291.1]
WARNING, no entry stored in dbm for [ENSG00000258082.1]
WARNING, no entry stored in dbm for [ENSG00000234062.8]
WARNING, no entry stored in dbm for [ENSG00000250090.1]
WARNING, no entry stored in dbm for [ENSG00000235582.2]
WARNING, no entry stored in dbm for [ENSG00000215016.2]
WARNING, no entry stored in dbm for [ENSG00000237445.2]
WARNING, no entry stored in dbm for [ENSG00000236523.2]
WARNING, no entry stored in dbm for [ENSG00000284882.1]
WARNING, no entry stored in dbm for [ENSG00000225489.7]
WARNING, no entry stored in dbm for [ENSG00000287839.1]
WARNING, no entry stored in dbm for [ENSG00000224945.1]
WARNING, no entry stored in dbm for [ENSG00000288016.1]
WARNING, no entry stored in dbm for [ENSG00000288016.1]
WARNING, no entry stored in dbm for [ENSG00000280229.1]
WARNING, no entry stored in dbm for [ENSG00000234026.1]
WARNING, no entry stored in dbm for [ENSG00000276375.1]
WARNING, no entry stored in dbm for [ENSG00000235119.1]
WARNING, no entry stored in dbm for [ENSG00000235119.1]
WARNING, no entry stored in dbm for [ENSG00000227679.1]
WARNING, no entry stored in dbm for [ENSG00000259119.1]
WARNING, no entry stored in dbm for [ENSG00000213315.5]
WARNING, no entry stored in dbm for [ENSG00000228863.8]
WARNING, no entry stored in dbm for [ENSG00000226812.2]
WARNING, no entry stored in dbm for [ENSG00000233217.2]
WARNING, no entry stored in dbm for [ENSG00000273004.1]
WARNING, no entry stored in dbm for [ENSG00000233558.1]
WARNING, no entry stored in dbm for [ENSG00000220105.2]
WARNING, no entry stored in dbm for [ENSG00000246350.1]
WARNING, no entry stored in dbm for [ENSG00000185839.3]
WARNING, no entry stored in dbm for [ENSG00000232218.1]
WARNING, no entry stored in dbm for [ENSG00000282740.1]
WARNING, no entry stored in dbm for [ENSG00000280604.1]
WARNING, no entry stored in dbm for [ENSG00000233762.3]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000256070.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000241383.2]
WARNING, no entry stored in dbm for [ENSG00000286912.1]
WARNING, no entry stored in dbm for [ENSG00000284428.1]
WARNING, no entry stored in dbm for [ENSG00000285062.1]
WARNING, no entry stored in dbm for [ENSG00000275140.1]
WARNING, no entry stored in dbm for [ENSG00000285062.1]
WARNING, no entry stored in dbm for [ENSG00000275140.1]
WARNING, no entry stored in dbm for [ENSG00000237017.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000235499.1]
WARNING, no entry stored in dbm for [ENSG00000203825.4]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000286045.1]
WARNING, no entry stored in dbm for [ENSG00000250909.1]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000248103.1]
WARNING, no entry stored in dbm for [ENSG00000198555.7]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000250378.4]
WARNING, no entry stored in dbm for [ENSG00000226084.5]
WARNING, no entry stored in dbm for [ENSG00000231965.4]
WARNING, no entry stored in dbm for [ENSG00000249244.1]
WARNING, no entry stored in dbm for [ENSG00000240401.9]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000288096.1]
WARNING, no entry stored in dbm for [ENSG00000264435.1]
WARNING, no entry stored in dbm for [ENSG00000251615.3]
WARNING, no entry stored in dbm for [ENSG00000245156.1]
WARNING, no entry stored in dbm for [ENSG00000239920.2]
WARNING, no entry stored in dbm for [ENSG00000287910.1]
WARNING, no entry stored in dbm for [ENSG00000262869.1]
WARNING, no entry stored in dbm for [ENSG00000285569.2]
WARNING, no entry stored in dbm for [ENSG00000284648.1]
WARNING, no entry stored in dbm for [ENSG00000242759.8]
WARNING, no entry stored in dbm for [ENSG00000287676.1]
WARNING, no entry stored in dbm for [ENSG00000259976.3]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000225209.2]
WARNING, no entry stored in dbm for [ENSG00000227542.1]
WARNING, no entry stored in dbm for [ENSG00000227542.1]
WARNING, no entry stored in dbm for [ENSG00000268362.6]
WARNING, no entry stored in dbm for [ENSG00000288633.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000284783.1]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
WARNING, no entry stored in dbm for [ENSG00000214259.3]
WARNING, no entry stored in dbm for [ENSG00000261879.7]
WARNING, no entry stored in dbm for [ENSG00000259542.5]
WARNING, no entry stored in dbm for [ENSG00000275834.1]
WARNING, no entry stored in dbm for [ENSG00000286699.1]
WARNING, no entry stored in dbm for [ENSG00000255182.2]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000233673.7]
WARNING, no entry stored in dbm for [ENSG00000285744.1]
WARNING, no entry stored in dbm for [ENSG00000229337.2]
WARNING, no entry stored in dbm for [ENSG00000284636.1]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000275223.1]
WARNING, no entry stored in dbm for [ENSG00000266962.2]
WARNING, no entry stored in dbm for [ENSG00000259668.6]
WARNING, no entry stored in dbm for [ENSG00000259299.1]
WARNING, no entry stored in dbm for [ENSG00000260035.1]
WARNING, no entry stored in dbm for [ENSG00000259932.1]
WARNING, no entry stored in dbm for [ENSG00000261837.1]
WARNING, no entry stored in dbm for [ENSG00000253474.2]
WARNING, no entry stored in dbm for [ENSG00000240535.8]
WARNING, no entry stored in dbm for [ENSG00000286622.1]
WARNING, no entry stored in dbm for [ENSG00000253671.3]
WARNING, no entry stored in dbm for [ENSG00000248223.1]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000285600.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000267169.2]
WARNING, no entry stored in dbm for [ENSG00000266988.6]
WARNING, no entry stored in dbm for [ENSG00000273007.2]
WARNING, no entry stored in dbm for [ENSG00000263070.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000262712.1]
WARNING, no entry stored in dbm for [ENSG00000203327.2]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000270087.5]
WARNING, no entry stored in dbm for [ENSG00000237149.5]
WARNING, no entry stored in dbm for [ENSG00000286667.1]
WARNING, no entry stored in dbm for [ENSG00000226180.3]
WARNING, no entry stored in dbm for [ENSG00000266985.1]
WARNING, no entry stored in dbm for [ENSG00000262732.1]
WARNING, no entry stored in dbm for [ENSG00000270804.1]
WARNING, no entry stored in dbm for [ENSG00000250608.2]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000257612.2]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000257176.3]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000270049.3]
WARNING, no entry stored in dbm for [ENSG00000270049.3]
WARNING, no entry stored in dbm for [ENSG00000276548.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000267727.1]
WARNING, no entry stored in dbm for [ENSG00000250258.1]
WARNING, no entry stored in dbm for [ENSG00000224194.1]
WARNING, no entry stored in dbm for [ENSG00000259106.1]
WARNING, no entry stored in dbm for [ENSG00000226472.8]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000244055.2]
WARNING, no entry stored in dbm for [ENSG00000218586.3]
WARNING, no entry stored in dbm for [ENSG00000268460.2]
WARNING, no entry stored in dbm for [ENSG00000287778.1]
WARNING, no entry stored in dbm for [ENSG00000266921.2]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000243004.6]
WARNING, no entry stored in dbm for [ENSG00000243554.1]
WARNING, no entry stored in dbm for [ENSG00000228434.1]
WARNING, no entry stored in dbm for [ENSG00000228113.7]
WARNING, no entry stored in dbm for [ENSG00000279159.1]
WARNING, no entry stored in dbm for [ENSG00000267698.1]
WARNING, no entry stored in dbm for [ENSG00000235140.2]
WARNING, no entry stored in dbm for [ENSG00000259144.2]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000226200.7]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 52, <$fh> line 2437.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2437.


	* STAR-Fusion complete.  See output: /tmp/nxf.kBcBqgcemj/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)