Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/332d702c50c023d3c67e9b74985bc8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/cfb3dfa567fd7b66a074eb35a02271/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/332d702c50c023d3c67e9b74985bc8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (7354697) splicing reads. 214264 splicing junctions. 171834 known splicing junctions. 42430 novel splicing junctions.
sampling 10% (14709395) splicing reads. 249939 splicing junctions. 183523 known splicing junctions. 66416 novel splicing junctions.
sampling 15% (22064093) splicing reads. 272454 splicing junctions. 189359 known splicing junctions. 83095 novel splicing junctions.
sampling 20% (29418791) splicing reads. 288653 splicing junctions. 193090 known splicing junctions. 95563 novel splicing junctions.
sampling 25% (36773488) splicing reads. 301254 splicing junctions. 195739 known splicing junctions. 105515 novel splicing junctions.
sampling 30% (44128186) splicing reads. 310854 splicing junctions. 197660 known splicing junctions. 113194 novel splicing junctions.
sampling 35% (51482884) splicing reads. 318816 splicing junctions. 199078 known splicing junctions. 119738 novel splicing junctions.
sampling 40% (58837582) splicing reads. 325255 splicing junctions. 200190 known splicing junctions. 125065 novel splicing junctions.
sampling 45% (66192279) splicing reads. 330776 splicing junctions. 201160 known splicing junctions. 129616 novel splicing junctions.
sampling 50% (73546977) splicing reads. 335424 splicing junctions. 201977 known splicing junctions. 133447 novel splicing junctions.
sampling 55% (80901675) splicing reads. 339325 splicing junctions. 202642 known splicing junctions. 136683 novel splicing junctions.
sampling 60% (88256373) splicing reads. 342568 splicing junctions. 203147 known splicing junctions. 139421 novel splicing junctions.
sampling 65% (95611070) splicing reads. 345355 splicing junctions. 203614 known splicing junctions. 141741 novel splicing junctions.
sampling 70% (102965768) splicing reads. 347699 splicing junctions. 203996 known splicing junctions. 143703 novel splicing junctions.
sampling 75% (110320466) splicing reads. 349620 splicing junctions. 204280 known splicing junctions. 145340 novel splicing junctions.
sampling 80% (117675164) splicing reads. 351178 splicing junctions. 204537 known splicing junctions. 146641 novel splicing junctions.
sampling 85% (125029861) splicing reads. 352405 splicing junctions. 204732 known splicing junctions. 147673 novel splicing junctions.
sampling 90% (132384559) splicing reads. 353406 splicing junctions. 204901 known splicing junctions. 148505 novel splicing junctions.
sampling 95% (139739257) splicing reads. 354083 splicing junctions. 205003 known splicing junctions. 149080 novel splicing junctions.
sampling 100% (147093955) splicing reads. 354575 splicing junctions. 205072 known splicing junctions. 149503 novel splicing junctions.
null device 
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