File Info

Filename
aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:48:23
                             Started mapping on |	Jun 08 07:50:50
                                    Finished on |	Jun 08 08:18:51
       Mapping speed, Million of reads per hour |	365.05

                          Number of input reads |	170457736
                      Average input read length |	231
                                    UNIQUE READS:
                   Uniquely mapped reads number |	161046712
                        Uniquely mapped reads % |	94.48%
                          Average mapped length |	231.06
                       Number of splices: Total |	146612910
            Number of splices: Annotated (sjdb) |	144397286
                       Number of splices: GT/AG |	145205467
                       Number of splices: GC/AG |	1002319
                       Number of splices: AT/AC |	107284
               Number of splices: Non-canonical |	297840
                      Mismatch rate per base, % |	0.41%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6354824
             % of reads mapped to multiple loci |	3.73%
        Number of reads mapped to too many loci |	234355
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	346175
       % of reads unmapped: too many mismatches |	0.20%
            Number of reads unmapped: too short |	1223306
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	138559
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	1971403
                            % of chimeric reads |	1.16%