File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/4ff5a5e9595e6312142bb83f774e75/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:20:13Z thread 431 Sample sheet being processed by common lib? Yes
2026-06-08T06:20:13Z thread 431 SampleSheet Settings: 
2026-06-08T06:20:13Z thread 431   FastqCompressionFormat = gzip
2026-06-08T06:20:13Z thread 431   NoLaneSplitting = FALSE
2026-06-08T06:20:13Z thread 431   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:20:13Z thread 431   SoftwareVersion = 4.3.6
2026-06-08T06:20:13Z thread 431 
2026-06-08T06:20:13Z thread 431 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:20:14Z thread 431 shared-thread-linux-native-asio output is disabled
2026-06-08T06:20:14Z thread 431 bcl-convert Version 4.4.6
2026-06-08T06:20:14Z thread 431 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:20:14Z thread 431 Command Line: --tiles s_8 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:20:14Z thread 431 Conversion Begins.
2026-06-08T06:20:14Z thread 431 Input BCL Information:
2026-06-08T06:20:14Z thread 431     Read Structure: 2026-06-08T06:20:14Z thread 431 Y1512026-06-08T06:20:14Z thread 431 ;2026-06-08T06:20:14Z thread 431 I102026-06-08T06:20:14Z thread 431 ;2026-06-08T06:20:14Z thread 431 I102026-06-08T06:20:14Z thread 431 ;2026-06-08T06:20:14Z thread 431 Y1512026-06-08T06:20:14Z thread 431 
2026-06-08T06:20:14Z thread 431     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:20:14Z thread 431     BCL file format: cbcl
2026-06-08T06:20:14Z thread 431     Positions file format: slocs
2026-06-08T06:20:14Z thread 431     Filter file format: filter
2026-06-08T06:20:14Z thread 431 Conversion Information:
2026-06-08T06:20:14Z thread 431     Tile filtering: converting 784/6272 tiles
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 1: 96
2026-06-08T06:20:14Z thread 431     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 2: 96
2026-06-08T06:20:14Z thread 431     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 3: 96
2026-06-08T06:20:14Z thread 431     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 4: 96
2026-06-08T06:20:14Z thread 431     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 5: 96
2026-06-08T06:20:14Z thread 431     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 6: 96
2026-06-08T06:20:14Z thread 431     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 7: 96
2026-06-08T06:20:14Z thread 431     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:14Z thread 431     Sample Count for Lane 8: 96
2026-06-08T06:20:14Z thread 431     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:20:14Z thread 431 # CPU hw threads available: 64
2026-06-08T06:20:14Z thread 431 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:20:14Z thread 431 SW compressors: 64
2026-06-08T06:20:14Z thread 431 SW decompressors: 32
2026-06-08T06:20:14Z thread 431 SW FASTQ compression level: 1
2026-06-08T06:55:03Z thread 431 Lane 8 Post-run Information:
2026-06-08T06:55:03Z thread 431     Total clusters: 3959672609
2026-06-08T06:55:03Z thread 431     Total Genomic Reads: 7919345218
2026-06-08T06:55:03Z thread 431     Total Genomic Input Gigabases 1195.82
2026-06-08T06:55:03Z thread 431     Minimum reads for a sample: 14146
2026-06-08T06:55:03Z thread 431     Maximum reads for a sample: 136183288
2026-06-08T06:55:03Z thread 431     Average reads per sample: 76311944.06
2026-06-08T06:55:03Z thread 431     Undetermined reads: 593398588
2026-06-08T06:55:05Z thread 431 Conversion Complete.