Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/da7e7d2c72b6044981dfba793785ac/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/fe4f351caa3858de63e355034b6726/aih-tih-sc-58b830-R1_A23WJ53LT4_1.FusionInspector.fusions.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/cytobands_hg38_GRCh38_v2.4.0.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/51a34a2f4f7e88e2c659d03107ab04/aih-tih-sc-58b830-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_annot.gtf
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/protein_domains_hg38_GRCh38_v2.4.0.gff3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/da7e7d2c72b6044981dfba793785ac/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/c8504be520cd9b503995626c1f104e/aih-tih-sc-58b830-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (8 inputs)

Loading annotation
Read 3041209 records
Warning in parseGtfAttribute("exon_number", exons) :
  Failed to parse 'exon_number' attribute of 8 record(s).
Loading protein domains
Read 134356 records
Drawing fusion #1: KPNA3:CAB39L
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-58b830-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-58b830-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-58b830-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-58b830-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Done