Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/9e6af36c120062ad233fe07c5c0bb5/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/23569b52d616fd3e1482c90034db45/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/23569b52d616fd3e1482c90034db45/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory