Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/db55d94806ce027654295fd462ff00/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/c225f731d32ecbf4db560283d36ace/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/c225f731d32ecbf4db560283d36ace/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e0a310d4e4d61dccb20b929125f612/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam ... Finished