File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f5c1e20e6b206fcf2e1b74005a2f27/.command.log
Size
4.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2ca847-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/5e7f2486d6946e2cc9410bb53f26ac/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f5c1e20e6b206fcf2e1b74005a2f27/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f5c1e20e6b206fcf2e1b74005a2f27/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/ebc3dad148e33a983a29614ffc917d/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
HMG20A--EIF2B3
starfusion
arriba
CDKAL1--LARP4B
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
ENTPD6--AL035252.2
starfusion
arriba
SH3PXD2A--COL17A1
starfusion
arriba
LARP4B--CDKAL1
starfusion
arriba
VPS13B--TCF12
starfusion
arriba
PDPK1--ABCA17P
starfusion
arriba
U2SURP--RHOA
starfusion
arriba
EXOC6B--ATP9A
starfusion
arriba
VIRMA--MYO1E
starfusion
arriba
PABPC1--VPS13B
starfusion
MOB1B--ACTL6A
starfusion
arriba
LINC01953--IKZF2
arriba
AC079610.2--IKZF2
arriba
PFKL--TRPM2
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba

  0%|          | 0/18 [00:00<?, ?it/s]
Processing HMG20A--EIF2B3:   0%|          | 0/18 [00:00<?, ?it/s]
Processing HMG20A--EIF2B3:   6%|▌         | 1/18 [00:00<00:01,  8.82it/s]
Processing CDKAL1--LARP4B:   6%|▌         | 1/18 [00:00<00:01,  8.82it/s]
Processing CDKAL1--LARP4B:  11%|█         | 2/18 [00:00<00:01,  9.16it/s]
Processing FSIP1--AC013652.1:  11%|█         | 2/18 [00:00<00:01,  9.16it/s]
Processing FSIP1--AC013652.1:  17%|█▋        | 3/18 [00:00<00:01,  9.25it/s]
Processing ENTPD6--AL035252.2:  17%|█▋        | 3/18 [00:00<00:01,  9.25it/s]
Processing ENTPD6--AL035252.2:  22%|██▏       | 4/18 [00:00<00:01,  9.23it/s]
Processing SH3PXD2A--COL17A1:  22%|██▏       | 4/18 [00:00<00:01,  9.23it/s] 
Processing SH3PXD2A--COL17A1:  28%|██▊       | 5/18 [00:00<00:01,  9.29it/s]
Processing LARP4B--CDKAL1:  28%|██▊       | 5/18 [00:00<00:01,  9.29it/s]   
Processing LARP4B--CDKAL1:  33%|███▎      | 6/18 [00:00<00:01,  9.33it/s]
Processing VPS13B--TCF12:  33%|███▎      | 6/18 [00:00<00:01,  9.33it/s] 
Processing VPS13B--TCF12:  39%|███▉      | 7/18 [00:00<00:01,  9.35it/s]
Processing PDPK1--ABCA17P:  39%|███▉      | 7/18 [00:00<00:01,  9.35it/s]
Processing PDPK1--ABCA17P:  44%|████▍     | 8/18 [00:00<00:01,  9.36it/s]
Processing U2SURP--RHOA:  44%|████▍     | 8/18 [00:00<00:01,  9.36it/s]  
Processing U2SURP--RHOA:  50%|█████     | 9/18 [00:00<00:00,  9.36it/s]
Processing EXOC6B--ATP9A:  50%|█████     | 9/18 [00:00<00:00,  9.36it/s]
Processing EXOC6B--ATP9A:  56%|█████▌    | 10/18 [00:01<00:00,  9.37it/s]
Processing VIRMA--MYO1E:  56%|█████▌    | 10/18 [00:01<00:00,  9.37it/s] 
Processing VIRMA--MYO1E:  61%|██████    | 11/18 [00:01<00:00,  9.37it/s]
Processing PABPC1--VPS13B:  61%|██████    | 11/18 [00:01<00:00,  9.37it/s]
Processing PABPC1--VPS13B:  67%|██████▋   | 12/18 [00:01<00:00,  9.37it/s]
Processing MOB1B--ACTL6A:  67%|██████▋   | 12/18 [00:01<00:00,  9.37it/s] 
Processing MOB1B--ACTL6A:  72%|███████▏  | 13/18 [00:01<00:00,  9.35it/s]
Processing LINC01953--IKZF2:  72%|███████▏  | 13/18 [00:01<00:00,  9.35it/s]
Processing LINC01953--IKZF2:  78%|███████▊  | 14/18 [00:01<00:00,  9.36it/s]
Processing AC079610.2--IKZF2:  78%|███████▊  | 14/18 [00:01<00:00,  9.36it/s]
Processing AC079610.2--IKZF2:  83%|████████▎ | 15/18 [00:01<00:00,  9.37it/s]
Processing PFKL--TRPM2:  83%|████████▎ | 15/18 [00:01<00:00,  9.37it/s]      
Processing PFKL--TRPM2:  89%|████████▉ | 16/18 [00:01<00:00,  9.38it/s]
Processing TVP23C--CDRT4:  89%|████████▉ | 16/18 [00:01<00:00,  9.38it/s]
Processing TVP23C--CDRT4:  94%|█████████▍| 17/18 [00:01<00:00,  9.38it/s]
Processing AC092807.3--DDAH1:  94%|█████████▍| 17/18 [00:01<00:00,  9.38it/s]
Processing AC092807.3--DDAH1: 100%|██████████| 18/18 [00:01<00:00,  9.38it/s]
Processing AC092807.3--DDAH1: 100%|██████████| 18/18 [00:01<00:00,  9.34it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory