File Info

Filename
aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/589bf60f2cdf8db17fd93fed47b60d/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:57:25
                             Started mapping on |	Jun 08 07:59:55
                                    Finished on |	Jun 08 08:42:36
       Mapping speed, Million of reads per hour |	417.21

                          Number of input reads |	296795392
                      Average input read length |	246
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282109488
                        Uniquely mapped reads % |	95.05%
                          Average mapped length |	246.21
                       Number of splices: Total |	313529028
            Number of splices: Annotated (sjdb) |	309452873
                       Number of splices: GT/AG |	310297387
                       Number of splices: GC/AG |	2279742
                       Number of splices: AT/AC |	284112
               Number of splices: Non-canonical |	667787
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.46
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9607152
             % of reads mapped to multiple loci |	3.24%
        Number of reads mapped to too many loci |	287779
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	385363
       % of reads unmapped: too many mismatches |	0.13%
            Number of reads unmapped: too short |	2111587
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	212658
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3687776
                            % of chimeric reads |	1.24%