.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (aih-tih-sc-12b72b-R1_A23WJ53LT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/120485a2baefc8ca1df01c5361a519/.command.sh
Size: 197 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (aih-tih-sc-12b72b-R1_A23WJ53LT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "aih-tih-sc-12b72b-R1_A23WJ53LT4_1.md.bam" > aih-tih-sc-12b72b-R1_A23WJ53LT4_1_full_bam_saturation_values.txt