File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/caf9b1e704a41117d1d180ee202eb0/.command.log
Size
7.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-284856-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/97d38271829e3989a43314b92e680f/aih-tih-sc-284856-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/caf9b1e704a41117d1d180ee202eb0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/caf9b1e704a41117d1d180ee202eb0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/4e43c25d711328ba42fea9361e1e6e/aih-tih-sc-284856-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NTRK3--NEPRO
starfusion
arriba
GFPT1--RAB10
starfusion
arriba
EFCAB14--CYP4A11
starfusion
arriba
HECTD4--VCL
starfusion
arriba
CRTC1--IFI30
starfusion
arriba
RAB10--GFPT1
starfusion
arriba
FAM222B--RBL1
starfusion
arriba
ZNF251--PIGF
starfusion
arriba
FXR1--SOX2-OT
starfusion
arriba
HECTD4--CASC11
starfusion
arriba
ZNF7--EPAS1
starfusion
arriba
ERBIN--SREK1
starfusion
ATXN7L1--NAMPT
starfusion
PLA2G6--FAM227A
starfusion
arriba
SETD2--SMARCC1
starfusion
arriba
EEF1G--AHNAK
arriba
EIF4B--KRT3
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
DYNC2I2--SH3GLB2
arriba
LINC00921--ELOB
arriba
NTRK3--ABI3BP
arriba
MAP4--FBXW12
arriba
TRIM59--IFT80
arriba
LRRC28--VSTM2B
arriba
TVP23C--CDRT4
arriba
CAMK2G--C10orf55
arriba
CAMK2G--VCL
arriba
AC015911.9--SLFN12L
arriba
STK4--KCNK15-AS1
arriba
ZNF528--ZNF610
arriba
ZNF528--ZNF880
arriba

  0%|          | 0/33 [00:00<?, ?it/s]
Processing NTRK3--NEPRO:   0%|          | 0/33 [00:00<?, ?it/s]
Processing NTRK3--NEPRO:   3%|▎         | 1/33 [00:00<00:03,  9.11it/s]
Processing GFPT1--RAB10:   3%|▎         | 1/33 [00:00<00:03,  9.11it/s]
Processing GFPT1--RAB10:   6%|▌         | 2/33 [00:00<00:03,  9.36it/s]
Processing EFCAB14--CYP4A11:   6%|▌         | 2/33 [00:00<00:03,  9.36it/s]
Processing EFCAB14--CYP4A11:   9%|▉         | 3/33 [00:00<00:03,  9.40it/s]
Processing HECTD4--VCL:   9%|▉         | 3/33 [00:00<00:03,  9.40it/s]     
Processing HECTD4--VCL:  12%|█▏        | 4/33 [00:00<00:03,  9.47it/s]
Processing CRTC1--IFI30:  12%|█▏        | 4/33 [00:00<00:03,  9.47it/s]
Processing CRTC1--IFI30:  15%|█▌        | 5/33 [00:00<00:02,  9.51it/s]
Processing RAB10--GFPT1:  15%|█▌        | 5/33 [00:00<00:02,  9.51it/s]
Processing RAB10--GFPT1:  18%|█▊        | 6/33 [00:00<00:02,  9.53it/s]
Processing FAM222B--RBL1:  18%|█▊        | 6/33 [00:00<00:02,  9.53it/s]
Processing FAM222B--RBL1:  21%|██        | 7/33 [00:00<00:02,  9.48it/s]
Processing ZNF251--PIGF:  21%|██        | 7/33 [00:00<00:02,  9.48it/s] 
Processing ZNF251--PIGF:  24%|██▍       | 8/33 [00:00<00:02,  9.50it/s]
Processing FXR1--SOX2-OT:  24%|██▍       | 8/33 [00:00<00:02,  9.50it/s]
Processing FXR1--SOX2-OT:  27%|██▋       | 9/33 [00:00<00:02,  9.52it/s]
Processing HECTD4--CASC11:  27%|██▋       | 9/33 [00:00<00:02,  9.52it/s]
Processing HECTD4--CASC11:  30%|███       | 10/33 [00:01<00:02,  9.53it/s]
Processing ZNF7--EPAS1:  30%|███       | 10/33 [00:01<00:02,  9.53it/s]   
Processing ZNF7--EPAS1:  33%|███▎      | 11/33 [00:01<00:02,  9.54it/s]
Processing ERBIN--SREK1:  33%|███▎      | 11/33 [00:01<00:02,  9.54it/s]
Processing ERBIN--SREK1:  36%|███▋      | 12/33 [00:01<00:02,  9.55it/s]
Processing ATXN7L1--NAMPT:  36%|███▋      | 12/33 [00:01<00:02,  9.55it/s]
Processing ATXN7L1--NAMPT:  39%|███▉      | 13/33 [00:01<00:02,  9.55it/s]
Processing PLA2G6--FAM227A:  39%|███▉      | 13/33 [00:01<00:02,  9.55it/s]
Processing PLA2G6--FAM227A:  42%|████▏     | 14/33 [00:01<00:01,  9.51it/s]
Processing SETD2--SMARCC1:  42%|████▏     | 14/33 [00:01<00:01,  9.51it/s] 
Processing SETD2--SMARCC1:  45%|████▌     | 15/33 [00:01<00:01,  9.48it/s]
Processing EEF1G--AHNAK:  45%|████▌     | 15/33 [00:01<00:01,  9.48it/s]  
Processing EEF1G--AHNAK:  48%|████▊     | 16/33 [00:01<00:01,  9.45it/s]
Processing EIF4B--KRT3:  48%|████▊     | 16/33 [00:01<00:01,  9.45it/s] 
Processing EIF4B--KRT3:  52%|█████▏    | 17/33 [00:01<00:01,  9.43it/s]
Processing PCDHA6--PCDHAC1:  52%|█████▏    | 17/33 [00:01<00:01,  9.43it/s]
Processing PCDHA6--PCDHAC1:  55%|█████▍    | 18/33 [00:01<00:01,  9.42it/s]
Processing PCDHA6--PCDHAC2:  55%|█████▍    | 18/33 [00:01<00:01,  9.42it/s]
Processing PCDHA6--PCDHAC2:  58%|█████▊    | 19/33 [00:02<00:01,  9.43it/s]
Processing PCDHA6--PCDHA13:  58%|█████▊    | 19/33 [00:02<00:01,  9.43it/s]
Processing PCDHA6--PCDHA13:  61%|██████    | 20/33 [00:02<00:01,  9.42it/s]
Processing DYNC2I2--SH3GLB2:  61%|██████    | 20/33 [00:02<00:01,  9.42it/s]
Processing DYNC2I2--SH3GLB2:  64%|██████▎   | 21/33 [00:02<00:01,  9.42it/s]
Processing LINC00921--ELOB:  64%|██████▎   | 21/33 [00:02<00:01,  9.42it/s] 
Processing LINC00921--ELOB:  67%|██████▋   | 22/33 [00:02<00:01,  9.41it/s]
Processing NTRK3--ABI3BP:  67%|██████▋   | 22/33 [00:02<00:01,  9.41it/s]  
Processing NTRK3--ABI3BP:  70%|██████▉   | 23/33 [00:02<00:01,  9.41it/s]
Processing MAP4--FBXW12:  70%|██████▉   | 23/33 [00:02<00:01,  9.41it/s] 
Processing MAP4--FBXW12:  73%|███████▎  | 24/33 [00:02<00:00,  9.41it/s]
Processing TRIM59--IFT80:  73%|███████▎  | 24/33 [00:02<00:00,  9.41it/s]
Processing TRIM59--IFT80:  76%|███████▌  | 25/33 [00:02<00:00,  9.42it/s]
Processing LRRC28--VSTM2B:  76%|███████▌  | 25/33 [00:02<00:00,  9.42it/s]
Processing LRRC28--VSTM2B:  79%|███████▉  | 26/33 [00:02<00:00,  9.42it/s]
Processing TVP23C--CDRT4:  79%|███████▉  | 26/33 [00:02<00:00,  9.42it/s] 
Processing TVP23C--CDRT4:  82%|████████▏ | 27/33 [00:02<00:00,  9.42it/s]
Processing CAMK2G--C10orf55:  82%|████████▏ | 27/33 [00:02<00:00,  9.42it/s]
Processing CAMK2G--C10orf55:  85%|████████▍ | 28/33 [00:02<00:00,  9.42it/s]
Processing CAMK2G--VCL:  85%|████████▍ | 28/33 [00:02<00:00,  9.42it/s]     
Processing CAMK2G--VCL:  88%|████████▊ | 29/33 [00:03<00:00,  9.43it/s]
Processing AC015911.9--SLFN12L:  88%|████████▊ | 29/33 [00:03<00:00,  9.43it/s]
Processing AC015911.9--SLFN12L:  91%|█████████ | 30/33 [00:03<00:00,  9.43it/s]
Processing STK4--KCNK15-AS1:  91%|█████████ | 30/33 [00:03<00:00,  9.43it/s]   
Processing STK4--KCNK15-AS1:  94%|█████████▍| 31/33 [00:03<00:00,  9.43it/s]
Processing ZNF528--ZNF610:  94%|█████████▍| 31/33 [00:03<00:00,  9.43it/s]  
Processing ZNF528--ZNF610:  97%|█████████▋| 32/33 [00:03<00:00,  9.43it/s]
Processing ZNF528--ZNF880:  97%|█████████▋| 32/33 [00:03<00:00,  9.43it/s]
Processing ZNF528--ZNF880: 100%|██████████| 33/33 [00:03<00:00,  9.42it/s]
Processing ZNF528--ZNF880: 100%|██████████| 33/33 [00:03<00:00,  9.45it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory