File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0020/B23WHTKLT4/nfcore_rnafusion__3e501777--20260520-120107/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0020-3e501777
- Published
- May 21, 2026 2:54 AM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | IS_CONTAMINATED | CONTAMINATION_PCT | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | 9999000000.0 | 534365456.0 | 592431644.0 | 0.004513 | 0.404233 | 352951210.0 | 0.947323 | 0.975342 | 0.045103 | 0.024658 | 334358760.0 | 169968559.0 | 15919028.0 | 4296954.0 | 751.57492 | 304.0 | 0.720821 | 0.625659 | 0.974137 | 0.0 | 180.2 | 164.0 | 0.01 | 1.65 | 0.69 | 0.0 | 0.01 | 4.81 | 0.98 | 0.0 | Yes | 62.74 | 309 | 891.373289 | 0.406065 | 0.0 | 97.7652 | 91.27022783430868 | 96.49 | 285826183.0 | 29.9803 | 0.973373 | 79890023327.0 | 592431644.0 | 0.548387 | 98.73860733333333 | 37.34311483333334 | |||||||||
| NTC_0001_0001_B23WHTKLT4_1 | 9999000000.0 | 48139.0 | 53950.0 | 0.57392 | 0.257683 | 40048.0 | 0.006417 | 0.030647 | 0.220435 | 0.969353 | 257.0 | 135.0 | 8828.0 | 4270.0 | 0.000296 | 0.0 | 0.0 | 0.0 | 0.894323 | 0.0 | 90.2 | 31.0 | 0.0 | 0.0 | 0.04 | 0.0 | 0.0 | 0.0 | 0.08 | 0.0 | Skipped | N/A | 48 | 61.799453 | 0.604777 | 0.0941 | 21.7059 | 2.9582438643502336 | 9.97 | 2689.0 | 67.3407 | 0.891326 | 5110262.0 | 53950.0 | 0.664522 | 3.213321675239495 | 50.61240729313832 |
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