File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0020/B23WHTKLT4/nfcore_rnafusion__3e501777--20260520-120107/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0020-3e501777
- Published
- May 21, 2026 2:55 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 75.8129 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 93.9553 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 88.9979 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9339.89922475 | bclconvert | |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 519197311 | bclconvert |
| NTC_0001_0001_B23WHTKLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 839474 | bclconvert |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 592431644.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.947323 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.975342 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.045103 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.024658 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 334358760.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 169968559.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 15919028.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 4296954.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 285826183.0 | star |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.004513 | star |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 164.0 | kallisto |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.01 | kallisto |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.81 | kallisto |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 62.74 | contamination |
| NTC_0001_0001_B23WHTKLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 53950.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 67 | fusion |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_13_B23WHTKLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 67 | fusion |
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