Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads 2,659_c95-T1-TRNA-1_B23WHTKLT4_1,TAACTTGGTC-GTCGTGAATC,42684607,41885803,798804,0,0.0111,0.9813,0.0187,0.0000 2,659_ciJ-T1-TRNA-1_B23WHTKLT4_1,ATAAGCGGAG-CTGTTCTACG,36084474,34924128,1160346,0,0.0093,0.9678,0.0322,0.0000 2,659_bhK-T1-TRNA-1_B23WHTKLT4_1,AGTAGTGTTG-AACACCTCTT,59897956,58800430,1097526,0,0.0155,0.9817,0.0183,0.0000 2,659_Lx-T1-TRNA-1_B23WHTKLT4_1,ATGTTGCCAC-TAGAAGCCAT,31634545,31022242,612303,0,0.0082,0.9806,0.0194,0.0000 2,659_bUW-T1-TRNA-1_B23WHTKLT4_1,CAGCAGGTCA-CACTTAGGTA,76827912,75640683,1187229,0,0.0199,0.9845,0.0155,0.0000 2,659_d01-T1-TRNA-1_B23WHTKLT4_1,TCTAGCTGCG-ATAGGTAAGG,31040790,30427614,613176,0,0.0080,0.9802,0.0198,0.0000 2,659_bNS-T1-TRNA-1_B23WHTKLT4_1,AGATTAGCGT-CGCCTTATAT,42544962,41284330,1260632,0,0.0110,0.9704,0.0296,0.0000 2,659_buD-T1-TRNA-1_B23WHTKLT4_1,AGGTAACAAC-GCACGATGCT,27776516,27262269,514247,0,0.0072,0.9815,0.0185,0.0000 2,659_Dl-T1-TRNA-1_B23WHTKLT4_1,CGCACTTCGT-AATATGCCAG,19172718,18820137,352581,0,0.0050,0.9816,0.0184,0.0000 2,659_dES-T1-TRNA-1_B23WHTKLT4_1,CTTGCTATTC-TAGAGTCACG,41497278,40693452,803826,0,0.0107,0.9806,0.0194,0.0000 2,659_ecd-T1-TRNA-1_B23WHTKLT4_1,TCTCACCAGG-TTAACAGGTC,41716844,40794734,922110,0,0.0108,0.9779,0.0221,0.0000 2,659_cfy-T1-TRNA-1_B23WHTKLT4_1,TTCCTCACGT-ACATGAGCCA,51668460,50702854,965606,0,0.0134,0.9813,0.0187,0.0000 2,659_bGc-T1-TRNA-1_B23WHTKLT4_1,TCGAACACGA-GCGAGGTTCT,24325335,23884864,440471,0,0.0063,0.9819,0.0181,0.0000 2,659_dts-T1-TRNA-1_B23WHTKLT4_1,TCCAACTGAA-TGTCCGTAGG,26125296,25549104,576192,0,0.0068,0.9779,0.0221,0.0000 2,659_cRa-T1-TRNA-1_B23WHTKLT4_1,GAACCGCATT-CATTATGCCT,55507080,54528377,978703,0,0.0144,0.9824,0.0176,0.0000 2,659_cTi-T1-TRNA-1_B23WHTKLT4_1,ACAACAGGCT-TCCACTGTTG,47763739,46933330,830409,0,0.0124,0.9826,0.0174,0.0000 2,659_bGW-T1-TRNA-1_B23WHTKLT4_1,TTACGCGCAT-CTTAACGACA,59045241,58010668,1034573,0,0.0153,0.9825,0.0175,0.0000 2,659_bQZ-T1-TRNA-1_B23WHTKLT4_1,TTCTCTTAGC-TCCTCGAGCT,34821378,34199037,622341,0,0.0090,0.9821,0.0179,0.0000 2,659_ezg-T1-TRNA-1_B23WHTKLT4_1,TCGCGACACT-CGAGTAATGT,50499540,49593267,906273,0,0.0131,0.9821,0.0179,0.0000 2,659_bTo-T1-TRNA-1_B23WHTKLT4_1,TGGAGATCGA-CAGCGGTATG,54039102,52663538,1375564,0,0.0140,0.9745,0.0255,0.0000 2,659_Mt-T1-TRNA-1_B23WHTKLT4_1,CCAGACCGAT-GCTACTTGCA,21024627,20557644,466983,0,0.0054,0.9778,0.0222,0.0000 2,659_djb-T1-TRNA-1_B23WHTKLT4_1,CCACAGCCTT-GCTATTGAAG,37830713,37063605,767108,0,0.0098,0.9797,0.0203,0.0000 2,659_gK-T1-TRNA-1_B23WHTKLT4_1,ACCGAATAGA-TCAGCATCCG,23468554,23018650,449904,0,0.0061,0.9808,0.0192,0.0000 2,659_rd-T1-TRNA-1_B23WHTKLT4_1,CGGACGATTC-TAGGTGGTGG,42647876,41963254,684622,0,0.0110,0.9839,0.0161,0.0000 2,659_epP-T1-TRNA-1_B23WHTKLT4_1,TTACTTCGTG-AAGATCGGAT,40810334,40082538,727796,0,0.0106,0.9822,0.0178,0.0000 2,659_ciZ-T1-TRNA-1_B23WHTKLT4_1,ATTCGGCTTA-TTAACGTCCG,39950770,39274403,676367,0,0.0103,0.9831,0.0169,0.0000 2,659_cAd-T1-TRNA-1_B23WHTKLT4_1,CGCGGTATCT-ATTACCGATC,40286295,39607516,678779,0,0.0104,0.9832,0.0168,0.0000 2,659_cRB-T1-TRNA-1_B23WHTKLT4_1,TATCCGCGTC-GTTGCATCGT,30860674,30241553,619121,0,0.0080,0.9799,0.0201,0.0000 2,659_dcz-T1-TRNA-1_B23WHTKLT4_1,AGGATGTCCA-ACTGGACGTT,6176163,6050590,125573,0,0.0016,0.9797,0.0203,0.0000 2,659_dc8-T1-TRNA-1_B23WHTKLT4_1,GCCAGCTATC-TTGTTCGTGT,39052687,38360822,691865,0,0.0101,0.9823,0.0177,0.0000 2,659_cWx-T1-TRNA-1_B23WHTKLT4_1,CTTACGAACT-ACGGACTGAG,37504890,36743067,761823,0,0.0097,0.9797,0.0203,0.0000 2,659_cVw-T1-TRNA-1_B23WHTKLT4_1,CAAGACTCAA-CACCGTCATA,47238556,46311458,927098,0,0.0122,0.9804,0.0196,0.0000 2,659_dm4-T1-TRNA-1_B23WHTKLT4_1,TCGACGGCAA-GTAGTTGTGT,13005964,12771634,234330,0,0.0034,0.9820,0.0180,0.0000 2,659_6i-T1-TRNA-1_B23WHTKLT4_1,TCAGTTCGAT-CTGAGTCCTT,24524875,24068130,456745,0,0.0064,0.9814,0.0186,0.0000 2,659_bCu-T1-TRNA-1_B23WHTKLT4_1,CTAACCTCAA-TCACAGTTGC,8739450,8542093,197357,0,0.0023,0.9774,0.0226,0.0000 2,659_cIX-T1-TRNA-1_B23WHTKLT4_1,GACCTACTAT-ATTGTAAGCG,38581648,37823420,758228,0,0.0100,0.9803,0.0197,0.0000 2,659_bua-T1-TRNA-1_B23WHTKLT4_1,ACGAGACGTC-CGGTCTCTCT,33562629,32903303,659326,0,0.0087,0.9804,0.0196,0.0000 2,FFPE_HD789_01_RNA_13_B23WHTKLT4_1,TATGGCAAGC-AACAGCAATG,64691156,63492104,1199052,0,0.0168,0.9815,0.0185,0.0000 2,FFPE_V4_0002_RNA_0001_B23WHTKLT4_1,ACTCCGAAGC-TCCGTGTTGC,39690020,39050979,639041,0,0.0103,0.9839,0.0161,0.0000 2,NTC_0001_0001_B23WHTKLT4_1,AATCTGCAGT-TGCGAAGTGA,106254,104475,1779,0,0.0000,0.9833,0.0167,0.0000 2,tih_rna_sample_00434_B23WHTKLT4_1,AGTTCAGGCG-CACAGCTATT,52402914,51480007,922907,0,0.0136,0.9824,0.0176,0.0000 2,tih_rna_sample_00096_B23WHTKLT4_1,CGCCAAGGTA-GATAGTGTTC,41502583,40716136,786447,0,0.0107,0.9811,0.0189,0.0000 2,tih_rna_sample_00097_B23WHTKLT4_1,CCTGACATCT-TAGCTACCAG,51443353,49991681,1451672,0,0.0133,0.9718,0.0282,0.0000 2,tih_rna_sample_00087_B23WHTKLT4_1,CGAGCGTAGT-TGCTCACGCA,62289581,61255223,1034358,0,0.0161,0.9834,0.0166,0.0000 2,tih_rna_sample_00434_B23WHTKLT4_2,CTGGATTACT-AAGTGTGCTA,51691437,50907298,784139,0,0.0134,0.9848,0.0152,0.0000 2,tih_rna_sample_00096_B23WHTKLT4_2,AGCAATTCAC-TCATCGTCTG,50038722,49172320,866402,0,0.0130,0.9827,0.0173,0.0000 2,tih_rna_sample_00097_B23WHTKLT4_2,ATATTCTCGG-AGATGCTCCG,42380339,41464350,915989,0,0.0110,0.9784,0.0216,0.0000 2,tih_rna_sample_00087_B23WHTKLT4_2,GACTCATCCA-GAACCAAGCG,55238067,54164771,1073296,0,0.0143,0.9806,0.0194,0.0000 2,tih_rna_sample_00124_B23WHTKLT4_1,CATAAGCGAC-CCTCTTCAAG,29039551,28443702,595849,0,0.0075,0.9795,0.0205,0.0000 2,tih_rna_sample_00090_B23WHTKLT4_1,CCTAAGCTGA-CGTCGCATCT,26582966,26043954,539012,0,0.0069,0.9797,0.0203,0.0000 2,tih_rna_sample_00116_B23WHTKLT4_1,CGATGTCTTG-CCGAACGTTC,39853735,39142840,710895,0,0.0103,0.9822,0.0178,0.0000 2,tih_rna_sample_00089_B23WHTKLT4_1,GAGATGAGAG-GAATGGCGTT,23499324,22819783,679541,0,0.0061,0.9711,0.0289,0.0000 2,tih_rna_sample_00124_B23WHTKLT4_2,TCACCATAAG-AAGTTCAGGA,28400724,27876943,523781,0,0.0074,0.9816,0.0184,0.0000 2,tih_rna_sample_00090_B23WHTKLT4_2,ACTTCCGGCA-GACCAATTGT,41792515,41098071,694444,0,0.0108,0.9834,0.0166,0.0000 2,tih_rna_sample_00116_B23WHTKLT4_2,AAGCGCTTAG-TGTCTGTGAC,35501342,34681207,820135,0,0.0092,0.9769,0.0231,0.0000 2,tih_rna_sample_00089_B23WHTKLT4_2,AACAACACAG-GAACATTGGC,45427434,44575701,851733,0,0.0118,0.9813,0.0187,0.0000 2,tih_rna_sample_00121_B23WHTKLT4_1,AGACTAGATG-CGTAACACTA,37483424,36723420,760004,0,0.0097,0.9797,0.0203,0.0000 2,tih_rna_sample_00163_B23WHTKLT4_1,CCTCTATAGA-GTACTTCCAA,23576770,23074890,501880,0,0.0061,0.9787,0.0213,0.0000 2,tih_rna_sample_00136_B23WHTKLT4_1,TACGCTACTT-TTAGCGTCTT,33331569,32711842,619727,0,0.0086,0.9814,0.0186,0.0000 2,tih_rna_sample_00145_B23WHTKLT4_1,CGCACTGGTA-TTGACCGTCT,42511930,41797924,714006,0,0.0110,0.9832,0.0168,0.0000 2,tih_rna_sample_00121_B23WHTKLT4_2,AACTCTCTAC-ACGGCTTCTC,37995322,37102216,893106,0,0.0098,0.9765,0.0235,0.0000 2,tih_rna_sample_00163_B23WHTKLT4_2,GCCACCTAGT-TGCGATGTAT,40522159,39544943,977216,0,0.0105,0.9759,0.0241,0.0000 2,tih_rna_sample_00136_B23WHTKLT4_2,CTCCGCCATA-GCGTTCAGCA,33750567,33119728,630839,0,0.0087,0.9813,0.0187,0.0000 2,tih_rna_sample_00145_B23WHTKLT4_2,TGACACGATT-GCCTAGGAAG,37073277,36317349,755928,0,0.0096,0.9796,0.0204,0.0000 2,tih_rna_sample_00146_B23WHTKLT4_1,CAACTGCGCA-AGTGTATCCG,40461113,39605789,855324,0,0.0105,0.9789,0.0211,0.0000 2,tih_rna_sample_00149_B23WHTKLT4_1,GCAATCTGCT-ACGAACCAAG,29635352,29066996,568356,0,0.0077,0.9808,0.0192,0.0000 2,tih_rna_sample_00150_B23WHTKLT4_1,CTCTATTGAG-CACGCAAGTC,31370064,30449122,920942,0,0.0081,0.9706,0.0294,0.0000 2,tih_rna_sample_00158_B23WHTKLT4_1,CACTTACGGC-GCTGGAGAAG,28003691,27475819,527872,0,0.0073,0.9811,0.0189,0.0000 2,tih_rna_sample_00146_B23WHTKLT4_2,TCAGCATCTA-CCAGTGTACG,49976285,49048003,928282,0,0.0129,0.9814,0.0186,0.0000 2,tih_rna_sample_00149_B23WHTKLT4_2,GTTGCATCAA-GTTGATGCGA,31867379,31334320,533059,0,0.0083,0.9833,0.0167,0.0000 2,tih_rna_sample_00150_B23WHTKLT4_2,ATGACAGCAC-CGCTTGTTAT,48613586,47562675,1050911,0,0.0126,0.9784,0.0216,0.0000 2,tih_rna_sample_00158_B23WHTKLT4_2,TAGCGACGGA-GTAACGTTCA,20312970,19855714,457256,0,0.0053,0.9775,0.0225,0.0000 2,tih_rna_sample_00161_B23WHTKLT4_1,GTATGCCACA-CCGAGTCTTC,36800193,36146691,653502,0,0.0095,0.9822,0.0178,0.0000 2,tih_rna_sample_00164_B23WHTKLT4_1,AGTATCCGAT-TATTGCGCTA,31465304,30630857,834447,0,0.0081,0.9735,0.0265,0.0000 2,tih_rna_sample_00166_B23WHTKLT4_1,AACGAAGATC-TGTGGTCTAA,38998189,38233336,764853,0,0.0101,0.9804,0.0196,0.0000 2,tih_rna_sample_00451_B23WHTKLT4_1,CCTCCTGTGA-CACGTCTACG,36284026,35326633,957393,0,0.0094,0.9736,0.0264,0.0000 2,tih_rna_sample_00161_B23WHTKLT4_2,TAGGCGAATG-AGTCCAGTGA,47104449,46286452,817997,0,0.0122,0.9826,0.0174,0.0000 2,tih_rna_sample_00164_B23WHTKLT4_2,AGTAAGGAGA-ATGCTTGGTC,17057643,16747328,310315,0,0.0044,0.9818,0.0182,0.0000 2,tih_rna_sample_00166_B23WHTKLT4_2,CCGAACAGAG-TGATACTCGC,28984137,28300001,684136,0,0.0075,0.9764,0.0236,0.0000 2,tih_rna_sample_00451_B23WHTKLT4_2,AGAACTAACG-TTATCGAGAG,21846193,21442090,404103,0,0.0057,0.9815,0.0185,0.0000 2,tih_rna_sample_00457_B23WHTKLT4_1,GAGCAGCTTG-TGCCAGTATT,50593689,49432107,1161582,0,0.0131,0.9770,0.0230,0.0000 2,tih_rna_sample_00462_B23WHTKLT4_1,CCGATAGTAG-GAGTTGCATA,53737010,52272303,1464707,0,0.0139,0.9727,0.0273,0.0000 2,tih_rna_sample_00464_B23WHTKLT4_1,GTGTCTACAG-ACACTAGCAT,34715303,34079128,636175,0,0.0090,0.9817,0.0183,0.0000 2,tih_rna_sample_00467_B23WHTKLT4_1,GTACAGACCG-GTTCTAATGG,36779091,36037981,741110,0,0.0095,0.9798,0.0202,0.0000 2,tih_rna_sample_00457_B23WHTKLT4_2,GCCAACAGAC-CGTTCACGTT,38207240,37499209,708031,0,0.0099,0.9815,0.0185,0.0000 2,tih_rna_sample_00462_B23WHTKLT4_2,CCTCGTTGGA-GACTGCGTTA,39901794,39132980,768814,0,0.0103,0.9807,0.0193,0.0000 2,tih_rna_sample_00464_B23WHTKLT4_2,AATAGGTAGG-TGGCTTATGG,25706107,25290788,415319,0,0.0067,0.9838,0.0162,0.0000 2,tih_rna_sample_00467_B23WHTKLT4_2,TATGCGTAGC-TCAGAGGCAC,38960650,38234288,726362,0,0.0101,0.9814,0.0186,0.0000 2,tih_rna_sample_00473_B23WHTKLT4_1,CCAGTCGTCA-CGCTAGGCTA,59970001,58813170,1156831,0,0.0155,0.9807,0.0193,0.0000 2,tih_rna_sample_00461_B23WHTKLT4_1,AGAAGACCTA-AACCGTAACA,6487724,6326220,161504,0,0.0017,0.9751,0.0249,0.0000 2,tih_rna_sample_00479_B23WHTKLT4_1,CCGTGAGTTC-CTTGGTATGA,46767976,45952029,815947,0,0.0121,0.9826,0.0174,0.0000 2,tih_rna_sample_00480_B23WHTKLT4_1,TCAATTCCGA-TGTAGATCCG,35742461,35185598,556863,0,0.0093,0.9844,0.0156,0.0000 2,tih_rna_sample_00473_B23WHTKLT4_2,CGGAACACAA-AACTCTACCG,65650878,64284450,1366428,0,0.0170,0.9792,0.0208,0.0000 2,tih_rna_sample_00461_B23WHTKLT4_2,CTATAACGGA-CGTGACATTC,24431176,23965985,465191,0,0.0063,0.9810,0.0190,0.0000 2,tih_rna_sample_00479_B23WHTKLT4_2,AGATGTAAGG-CTGTACCAGG,23733713,23330249,403464,0,0.0061,0.9830,0.0170,0.0000 2,tih_rna_sample_00480_B23WHTKLT4_2,ATGCTTACTG-ACTGGTTCCG,45701297,44832198,869099,0,0.0118,0.9810,0.0190,0.0000 2,Undetermined,,248061909,248061909,0,0,0.0642,1.0000,0.0000,0.0000