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BCL CONVERT QC REPORT - DETAILED
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1. % UNDETERMINED PER LANE
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%_Undetermined Undetermined_Reads Total_Reads
Lane
1 6.38 244051853 3823250855
2 6.42 248061909 3861686106
3 6.60 254304579 3851275165
4 6.80 259655929 3820642153
5 6.51 250131631 3845143934
6 6.49 251922362 3881820429
7 6.31 247868778 3929568091
8 6.32 247513752 3913431892
2. SAMPLES WITH LOW READS (NON-NTC)
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No samples found with low reads
3. NTC SAMPLES WITH HIGH READS
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No NTC samples found with high reads
4. TOP UNKNOWN BARCODES
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Found 102 significant unknown barcodes:
Lane index index2 # Reads % of Unknown Barcodes % of All Reads Percentage_of_Lane Percentage_of_Total
0 1 CCAGTCGTCA GGGGGGGGGG 6962531 0.028529 0.001821 0.182110 0.022513
1 1 ATGACAGCAC GGGGGGGGGG 6066989 0.024859 0.001587 0.158687 0.019617
2 1 AGATTAGCGT GGGGGGGGGG 5414319 0.022185 0.001416 0.141616 0.017507
3 1 GAGCAGCTTG GGGGGGGGGG 4509348 0.018477 0.001179 0.117945 0.014581
4 1 TATCCGCGTC GGGGGGGGGG 3561076 0.014591 0.000931 0.093143 0.011515
5 1 TGGAGATCGA GGGGGGGGGG 3547884 0.014537 0.000928 0.092798 0.011472
6 1 CCTAAGCTGA GGGGGGGGGG 3378865 0.013845 0.000884 0.088377 0.010925
7 1 TAACTTGGTC GGGGGGGGGG 3219663 0.013193 0.000842 0.084213 0.010411
8 1 CCGATAGTAG GGGGGGGGGG 2615803 0.010718 0.000684 0.068418 0.008458
9 1 CAACTGCGCA GGGGGGGGGG 2422296 0.009925 0.000634 0.063357 0.007832
10 1 TCCAACTGAA GGGGGGGGGG 2048053 0.008392 0.000536 0.053568 0.006622
11 1 ACGAGACGTC GGGGGGGGGG 1993788 0.008170 0.000521 0.052149 0.006447
12 1 GCCACCTAGT GGGGGGGGGG 1934287 0.007926 0.000506 0.050593 0.006254
13 2 CCAGTCGTCA GGGGGGGGGG 7002464 0.028229 0.001813 0.181332 0.022642
14 2 ATGACAGCAC GGGGGGGGGG 6079630 0.024509 0.001574 0.157435 0.019658
15 2 AGATTAGCGT GGGGGGGGGG 5403185 0.021782 0.001399 0.139918 0.017471
16 2 GAGCAGCTTG GGGGGGGGGG 4539477 0.018300 0.001176 0.117552 0.014678
17 2 TGGAGATCGA GGGGGGGGGG 3565220 0.014372 0.000923 0.092323 0.011528
18 2 TATCCGCGTC GGGGGGGGGG 3556202 0.014336 0.000921 0.092089 0.011499
19 2 CCTAAGCTGA GGGGGGGGGG 3379747 0.013625 0.000875 0.087520 0.010928
20 2 TAACTTGGTC GGGGGGGGGG 3247512 0.013092 0.000841 0.084096 0.010501
21 2 CCGATAGTAG GGGGGGGGGG 2660223 0.010724 0.000689 0.068888 0.008602
22 2 CAACTGCGCA GGGGGGGGGG 2448085 0.009869 0.000634 0.063394 0.007916
23 2 TCCAACTGAA GGGGGGGGGG 2048279 0.008257 0.000530 0.053041 0.006623
24 2 ACGAGACGTC GGGGGGGGGG 2022141 0.008152 0.000524 0.052364 0.006538
25 2 GCCACCTAGT GGGGGGGGGG 1945197 0.007842 0.000504 0.050372 0.006290
26 3 CCAGTCGTCA GGGGGGGGGG 7009127 0.027562 0.001820 0.181995 0.022664
27 3 ATGACAGCAC GGGGGGGGGG 6077048 0.023897 0.001578 0.157793 0.019650
28 3 AGATTAGCGT GGGGGGGGGG 5396656 0.021221 0.001401 0.140126 0.017450
29 3 GAGCAGCTTG GGGGGGGGGG 4552837 0.017903 0.001182 0.118216 0.014721
30 3 TGGAGATCGA GGGGGGGGGG 3605847 0.014179 0.000936 0.093627 0.011659
31 3 TATCCGCGTC GGGGGGGGGG 3571626 0.014045 0.000927 0.092739 0.011549
32 3 CCTAAGCTGA GGGGGGGGGG 3367563 0.013242 0.000874 0.087440 0.010889
33 3 TAACTTGGTC GGGGGGGGGG 3222048 0.012670 0.000837 0.083662 0.010418
34 3 CCGATAGTAG GGGGGGGGGG 2801355 0.011016 0.000727 0.072738 0.009058
35 3 CAACTGCGCA GGGGGGGGGG 2502817 0.009842 0.000650 0.064987 0.008093
36 3 TCCAACTGAA GGGGGGGGGG 2071468 0.008146 0.000538 0.053787 0.006698
37 3 ACGAGACGTC GGGGGGGGGG 2049373 0.008059 0.000532 0.053213 0.006627
38 3 GCCACCTAGT GGGGGGGGGG 2015133 0.007924 0.000523 0.052324 0.006516
39 4 CCAGTCGTCA GGGGGGGGGG 6759686 0.026033 0.001769 0.176925 0.021857
40 4 ATGACAGCAC GGGGGGGGGG 5851328 0.022535 0.001532 0.153150 0.018920
41 4 AGATTAGCGT GGGGGGGGGG 5216733 0.020091 0.001365 0.136541 0.016868
42 4 GAGCAGCTTG GGGGGGGGGG 4309555 0.016597 0.001128 0.112797 0.013935
43 4 TGGAGATCGA GGGGGGGGGG 3611682 0.013909 0.000945 0.094531 0.011678
44 4 TATCCGCGTC GGGGGGGGGG 3485342 0.013423 0.000912 0.091224 0.011270
45 4 CCTAAGCTGA GGGGGGGGGG 3120977 0.012020 0.000817 0.081687 0.010091
46 4 TAACTTGGTC GGGGGGGGGG 3021419 0.011636 0.000791 0.079081 0.009770
47 4 CCGATAGTAG GGGGGGGGGG 2890807 0.011133 0.000757 0.075663 0.009347
48 4 CAACTGCGCA GGGGGGGGGG 2547273 0.009810 0.000667 0.066671 0.008236
49 4 GCCACCTAGT GGGGGGGGGG 2184381 0.008413 0.000572 0.057173 0.007063
50 4 TCCAACTGAA GGGGGGGGGG 2049099 0.007892 0.000536 0.053632 0.006626
51 4 ACGAGACGTC GGGGGGGGGG 2006695 0.007728 0.000525 0.052522 0.006489
52 5 CCAGTCGTCA GGGGGGGGGG 6619744 0.026465 0.001722 0.172159 0.021405
53 5 ATGACAGCAC GGGGGGGGGG 5783382 0.023121 0.001504 0.150407 0.018700
54 5 AGATTAGCGT GGGGGGGGGG 5159306 0.020626 0.001342 0.134177 0.016682
55 5 GAGCAGCTTG GGGGGGGGGG 4274546 0.017089 0.001112 0.111167 0.013821
56 5 TGGAGATCGA GGGGGGGGGG 3482530 0.013923 0.000906 0.090570 0.011261
57 5 TATCCGCGTC GGGGGGGGGG 3380706 0.013516 0.000879 0.087921 0.010931
58 5 CCTAAGCTGA GGGGGGGGGG 3111228 0.012438 0.000809 0.080913 0.010060
59 5 TAACTTGGTC GGGGGGGGGG 3018179 0.012066 0.000785 0.078493 0.009759
60 5 CCGATAGTAG GGGGGGGGGG 2792883 0.011166 0.000726 0.072634 0.009031
61 5 CAACTGCGCA GGGGGGGGGG 2444129 0.009771 0.000636 0.063564 0.007903
62 5 GCCACCTAGT GGGGGGGGGG 2051625 0.008202 0.000534 0.053356 0.006634
63 5 TCCAACTGAA GGGGGGGGGG 1972323 0.007885 0.000513 0.051294 0.006377
64 5 ACGAGACGTC GGGGGGGGGG 1946441 0.007782 0.000506 0.050621 0.006294
65 6 CCAGTCGTCA GGGGGGGGGG 7005402 0.027808 0.001805 0.180467 0.022652
66 6 ATGACAGCAC GGGGGGGGGG 6099344 0.024211 0.001571 0.157126 0.019722
67 6 AGATTAGCGT GGGGGGGGGG 5434523 0.021572 0.001400 0.139999 0.017572
68 6 GAGCAGCTTG GGGGGGGGGG 4574407 0.018158 0.001178 0.117842 0.014791
69 6 TGGAGATCGA GGGGGGGGGG 3591340 0.014256 0.000925 0.092517 0.011612
70 6 TATCCGCGTC GGGGGGGGGG 3577830 0.014202 0.000922 0.092169 0.011569
71 6 CCTAAGCTGA GGGGGGGGGG 3455802 0.013718 0.000890 0.089025 0.011174
72 6 TAACTTGGTC GGGGGGGGGG 3298469 0.013093 0.000850 0.084972 0.010665
73 6 CCGATAGTAG GGGGGGGGGG 2724401 0.010814 0.000702 0.070184 0.008809
74 6 CAACTGCGCA GGGGGGGGGG 2486138 0.009869 0.000640 0.064046 0.008039
75 6 ACGAGACGTC GGGGGGGGGG 2066669 0.008204 0.000532 0.053240 0.006682
76 6 TCCAACTGAA GGGGGGGGGG 2062199 0.008186 0.000531 0.053125 0.006668
77 6 GCCACCTAGT GGGGGGGGGG 1973703 0.007835 0.000508 0.050845 0.006382
78 7 CCAGTCGTCA GGGGGGGGGG 7173914 0.028942 0.001826 0.182562 0.023196
79 7 ATGACAGCAC GGGGGGGGGG 6237383 0.025164 0.001587 0.158729 0.020168
80 7 AGATTAGCGT GGGGGGGGGG 5539174 0.022347 0.001410 0.140961 0.017911
81 7 GAGCAGCTTG GGGGGGGGGG 4704683 0.018981 0.001197 0.119725 0.015212
82 7 TGGAGATCGA GGGGGGGGGG 3654695 0.014744 0.000930 0.093005 0.011817
83 7 TATCCGCGTC GGGGGGGGGG 3615798 0.014588 0.000920 0.092015 0.011691
84 7 CCTAAGCTGA GGGGGGGGGG 3454689 0.013938 0.000879 0.087915 0.011171
85 7 TAACTTGGTC GGGGGGGGGG 3351724 0.013522 0.000853 0.085295 0.010838
86 7 CCGATAGTAG GGGGGGGGGG 2736628 0.011041 0.000696 0.069642 0.008849
87 7 CAACTGCGCA GGGGGGGGGG 2516660 0.010153 0.000640 0.064044 0.008137
88 7 ACGAGACGTC GGGGGGGGGG 2098673 0.008467 0.000534 0.053407 0.006786
89 7 TCCAACTGAA GGGGGGGGGG 2073661 0.008366 0.000528 0.052771 0.006705
90 8 CCAGTCGTCA GGGGGGGGGG 7182417 0.029018 0.001835 0.183532 0.023224
91 8 ATGACAGCAC GGGGGGGGGG 6238558 0.025205 0.001594 0.159414 0.020172
92 8 AGATTAGCGT GGGGGGGGGG 5574858 0.022523 0.001425 0.142454 0.018026
93 8 GAGCAGCTTG GGGGGGGGGG 4673417 0.018881 0.001194 0.119420 0.015111
94 8 TGGAGATCGA GGGGGGGGGG 3647178 0.014735 0.000932 0.093196 0.011793
95 8 TATCCGCGTC GGGGGGGGGG 3606572 0.014571 0.000922 0.092159 0.011662
96 8 CCTAAGCTGA GGGGGGGGGG 3444183 0.013915 0.000880 0.088009 0.011137
97 8 TAACTTGGTC GGGGGGGGGG 3327404 0.013443 0.000850 0.085025 0.010759
98 8 CCGATAGTAG GGGGGGGGGG 2679540 0.010826 0.000685 0.068470 0.008664
99 8 CAACTGCGCA GGGGGGGGGG 2494052 0.010076 0.000637 0.063731 0.008064
100 8 TCCAACTGAA GGGGGGGGGG 2072877 0.008375 0.000530 0.052968 0.006703
101 8 ACGAGACGTC GGGGGGGGGG 2061601 0.008329 0.000527 0.052680 0.006666
5. BARCODES WITH HIGH MISMATCH RATES
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No barcodes found with high mismatch rates
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FINAL STATUS CHECK
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Overall % Undetermined: 6.48%
Status: WARNING
Reason(s):
Overall undetermined 6.48% >= 5.0%