File Info

Filename
NTC_0001_0001_B23WHTKLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0020/B23WHTKLT4/nfcore_rnafusion__73d51683--20260607-225254/star_alignment/NTC_0001_0001_B23WHTKLT4_1.Log.final.out
Size
1.9 KB
Published
Jun 08, 2026 12:26 AM
                                 Started job on |	Jun 08 07:23:39
                             Started mapping on |	Jun 08 07:25:35
                                    Finished on |	Jun 08 07:26:08
       Mapping speed, Million of reads per hour |	2.94

                          Number of input reads |	26975
                      Average input read length |	212
                                    UNIQUE READS:
                   Uniquely mapped reads number |	2689
                        Uniquely mapped reads % |	9.97%
                          Average mapped length |	198.47
                       Number of splices: Total |	95
            Number of splices: Annotated (sjdb) |	53
                       Number of splices: GT/AG |	86
                       Number of splices: GC/AG |	9
                       Number of splices: AT/AC |	0
               Number of splices: Non-canonical |	0
                      Mismatch rate per base, % |	0.89%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.29
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.00
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4800
             % of reads mapped to multiple loci |	17.79%
        Number of reads mapped to too many loci |	759
             % of reads mapped to too many loci |	2.81%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	567
       % of reads unmapped: too many mismatches |	2.10%
            Number of reads unmapped: too short |	14908
                 % of reads unmapped: too short |	55.27%
                Number of reads unmapped: other |	168
                     % of reads unmapped: other |	0.62%
                                  CHIMERIC READS:
                       Number of chimeric reads |	4019
                            % of chimeric reads |	14.90%