#gene1	gene2	strand1(gene/fusion)	strand2(gene/fusion)	breakpoint1	breakpoint2	site1	site2	type	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	reading_frame	tags	retained_protein_domains	closest_genomic_breakpoint1	closest_genomic_breakpoint2	gene_id1	gene_id2	transcript_id1	transcript_id2	direction1	direction2	filters	fusion_transcript	peptide_sequence	read_identifiers
GPC3	GPC3	-/.	-/.	chrX:133661569	chrX:133661585	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	AC074051.3	-/.	+/.	chr10:104479908	chr16:5228832	intron	intron	translocation/3'-3'	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000285567.2	.	.	downstream	upstream	mismatches(1)	.	.	.
LSM1P2(92375),AC008662.1(138896)	SAMD3	./.	-/.	chr5:163980202	chr6:130278625	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164483.17	.	.	downstream	upstream	mismatches(1)	.	.	.
MACF1	LHFPL2	+/.	-/.	chr1:39374821	chr5:78642615	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000127603.30	ENSG00000145685.14	.	.	upstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736257	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DMD	DMD	-/.	-/.	chrX:31138630	chrX:31138639	intron	intron	duplication/ITD	0	0	0	95	0	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679812	chr21:39679823	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGL@-ext	LINC02882	+/+	-/-	chr22:22117427	chr12:73881443	exon	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	IGL.g@-ext	ENSG00000251138.7	.	.	downstream	downstream	mismatches(1)	.	.	.
TNNI3K	LINC02882	+/.	-/.	chr1:74399570	chr12:73881443	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000116783.15	ENSG00000251138.7	.	.	upstream	downstream	mismatches(1)	.	.	.
CCDC187(4925),DKFZP434A062(10477)	LINC02882	./.	-/.	chr9:136311826	chr12:73881443	intergenic	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	.	ENSG00000251138.7	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02882	AC011444.3	-/.	+/.	chr12:73881443	chr19:6110324	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000251138.7	ENSG00000267299.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02882	RFX2	-/.	-/.	chr12:73881443	chr19:6110324	intron	intron	translocation/3'-3'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000251138.7	ENSG00000087903.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AQP10(183),ATP8B2(17)	LINC02882	./.	-/.	chr1:154325508	chr12:73881443	intergenic	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	.	ENSG00000251138.7	.	.	downstream	downstream	mismatches(1)	.	.	.
LHFPL4(46849),DUSP5P2(77)	LINC02882	./.	-/.	chr3:9600671	chr12:73881443	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000251138.7	.	.	upstream	downstream	mismatches(1)	.	.	.
PHF19	LINC02882	-/.	-/.	chr9:120868034	chr12:73881443	intron	intron	translocation/3'-3'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000119403.15	ENSG00000251138.7	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA1522	LINC02882	+/.	-/.	chr1:32764226	chr12:73881443	intron	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000162522.11	ENSG00000251138.7	.	.	downstream	downstream	mismatches(1)	.	.	.
GML	GML	+/.	+/.	chr8:142887393	chr8:142887448	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000104499.7	ENSG00000104499.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL139220.2	AL139220.2	+/.	+/.	chr1:44069471	chr1:44069484	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000230615.7	ENSG00000230615.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LRRC36	LRRC36	+/.	+/.	chr16:67331072	chr16:67331081	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000159708.18	ENSG00000159708.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP3K7(258422),AL080284.1(544819)	MAP3K7(258431),AL080284.1(544810)	./.	./.	chr6:90845494	chr6:90845503	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
MAP3K7(258408),AL080284.1(544833)	MAP3K7(258423),AL080284.1(544818)	./.	./.	chr6:90845480	chr6:90845495	intergenic	intergenic	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP3K7(258412),AL080284.1(544829)	MAP3K7(258423),AL080284.1(544818)	./.	./.	chr6:90845484	chr6:90845495	intergenic	intergenic	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
C11orf53	C11orf53	+/.	+/.	chr11:111278545	chr11:111278560	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000150750.8	ENSG00000150750.8	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
INTS5(480),C11orf98(9035),LBHD1(9035)	INTS5(490),C11orf98(9025),LBHD1(9025)	./.	./.	chr11:62653782	chr11:62653792	intergenic	intergenic	duplication/ITD	0	0	0	105	93	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565364	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC078785.1	AC078785.1	+/.	+/.	chr3:113118178	chr3:113118222	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000240057.6	ENSG00000240057.6	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
KIAA2012-AS1	RAPGEF1	-/.	-/.	chr2:202083779	chr9:131578988	intron	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035.4	ENSG00000107263.18	.	.	downstream	downstream	mismatches(1)	.	.	.
TNNI1	H3P11(26452),THRAP3P1(156974)	-/-	./-	chr1:201408720	chr3:31295858	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Troponin(100%)|	.	.	ENSG00000159173.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	AL035446.2	./.	-/.	chr3:31295858	chr6:140635171	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285875.1	.	.	downstream	upstream	mismatches(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	ZMYND11	./.	+/.	chr3:31295858	chr10:164506	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000015171.20	.	.	downstream	upstream	mismatches(1)	.	.	.
LEMD1-DT(28657),CDK18(6915)	H3P11(26452),THRAP3P1(156974)	./.	./.	chr1:205497681	chr3:31295858	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	FUNDC2P1(32051),ANKRA2(10885)	./.	./.	chr3:31295858	chr5:73541305	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442154	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	NR3C1	+/.	-/.	chr2:32916556	chr5:143402914	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000113580.15	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158328	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	MYL10(431),CUX1(186177)	+/.	./.	chr2:32916562	chr7:101629727	intron	intergenic	translocation	0	0	0	1588	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
PIK3R6	PIK3R6	-/.	-/.	chr17:8827735	chr17:8827817	intron	intron	duplication/ITD	0	0	0	1	2	low	.	.	.	.	.	ENSG00000276231.5	ENSG00000276231.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00944(9018),AC078878.1(82928)	LINC00944(9033),AC078878.1(82913)	./.	./.	chr12:126781537	chr12:126781552	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565307	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565307	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565307	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
ABHD2(2774),RLBP1(4740)	ABHD2(2789),RLBP1(4725)	./.	./.	chr15:89205129	chr15:89205144	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261464	chr1:162261532	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC6A3	CTSLP6(12171),PGGT1BP2(6074)	-/.	./.	chr5:1408587	chr10:79886074	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000142319.18	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC6A3	RAB11AP2(10122),GGTA2P(123515)	-/.	./.	chr5:1408587	chr12:67142327	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000142319.18	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683523	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
AP003789.1(167314),AP000428.2(11469)	AP003789.1(167329),AP000428.2(11454)	./.	./.	chr8:107148885	chr8:107148900	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
C2orf91	C2orf91	-/.	-/.	chr2:41939326	chr2:41939341	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000205086.8	ENSG00000205086.8	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
DPY19L2P2	DPY19L2P2	-/.	-/.	chr7:103210626	chr7:103210672	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000170629.14	ENSG00000170629.14	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
Y_RNA(26215),CT66(60956)	Y_RNA(26230),CT66(60941)	./.	./.	chr7:69533837	chr7:69533852	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINGO2	LINGO2	-/.	-/.	chr9:28431030	chr9:28431071	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000174482.10	ENSG00000174482.10	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC00596	LINC00596	-/.	-/.	chr14:23928142	chr14:23928157	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000259334.1	ENSG00000259334.1	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TPCN1	FP236383.3	+/.	+/.	chr12:113295640	chr21:8397826	intron	intron	translocation/3'-3'	0	0	0	0	450	low	.	.	.	.	.	ENSG00000186815.13	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
TPCN1	.	+/.	./.	chr12:113295640	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000186815.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HGS	FP236383.3	+/.	+/.	chr17:81688571	chr21:8397826	intron	intron	translocation/3'-3'	0	0	0	0	450	low	.	.	.	.	.	ENSG00000185359.14	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
HGS	.	+/.	./.	chr17:81688571	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000185359.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HDAC5	.	-/-	./+	chr17:44078034	GL000220.1:158230	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HGS	.	+/.	./.	chr17:81688571	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000185359.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HDAC5	.	-/-	./+	chr17:44078034	GL000220.1:114258	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HDAC5	.	-/-	./+	chr17:44078034	KI270733.1:176193	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TPCN1	.	+/.	./.	chr12:113295640	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000186815.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HGS	.	+/.	./.	chr17:81688571	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000185359.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TPCN1	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	chr12:113295640	chr21:8259021	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000186815.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HDAC5	FP236383.3	-/-	+/+	chr17:44078034	chr21:8397826	3'UTR	intron	translocation	0	0	0	0	450	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC35E4	5_8S_rRNA(2088),FP236383.3(121622)	+/+	./+	chr22:30636545	chr21:8259021	CDS	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000100036.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HDAC5	FP236383.3	-/-	+/+	chr17:44078034	chr21:8442056	3'UTR	intron	translocation	0	0	0	0	2539	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
TPCN1	FP671120.4	+/.	+/.	chr12:113295640	chr21:8214792	intron	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000186815.13	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC35E4	FP236383.3	+/+	+/+	chr22:30636545	chr21:8397826	CDS	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	ENSG00000100036.13	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
GTF2IP8(18594),ANKRD30B(3081)	GTF2IP8(18607),ANKRD30B(3068)	./.	./.	chr18:14725191	chr18:14725204	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TYRO3(16299),AC016134.1(9569)	TYRO3(16362),AC016134.1(9506)	./.	./.	chr15:41599888	chr15:41599951	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113388	chr1:109113467	intron	intron	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113388	chr1:109113465	intron	intron	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
MIR17HG(30242),GPC5(13800)	MIR17HG(30313),GPC5(13729)	./.	./.	chr13:91384821	chr13:91384892	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR17HG(30242),GPC5(13800)	MIR17HG(30309),GPC5(13733)	./.	./.	chr13:91384821	chr13:91384888	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
VCAM1(126106),EXTL2(7221)	VCAM1(126179),EXTL2(7148)	./.	./.	chr1:100865151	chr1:100865224	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
VCAM1(126106),EXTL2(7221)	VCAM1(126177),EXTL2(7150)	./.	./.	chr1:100865151	chr1:100865222	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113364	chr1:109113451	intron	intron	duplication/ITD	0	0	0	3	8	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
KMT2C	KMT2C	-/.	-/.	chr7:152323855	chr7:152435462	intron	intron	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	ENSG00000055609.20	ENSG00000055609.20	.	.	downstream	upstream	read_through(1)	.	.	.
YWHAQ	FAM174A(65489),AC027315.1(1882)	-/-	./+	chr2:9630456	chr5:100652230	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000134308.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KMT2C	AC009835.1	-/.	-/.	chr7:152435462	chr18:32555379	intron	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000055609.20	ENSG00000287994.1	.	.	upstream	upstream	mismatches(1)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9777),AC108063.2(20078)	./.	./.	chr4:16094104	chr4:16094155	intergenic	intergenic	duplication/ITD	0	0	0	54	54	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP2B1	AP2B1	+/.	+/.	chr17:35583511	chr17:35583559	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000006125.18	ENSG00000006125.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FO393413.1(58397),RNU7-65P(12609)	FO393413.1(58412),RNU7-65P(12594)	./.	./.	chr6:49332191	chr6:49332206	intergenic	intergenic	duplication/ITD	0	0	0	13	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
TRAK1	TMEM132B	+/.	+/.	chr3:42201858	chr12:125495237	intron	intron	translocation/3'-3'	0	0	0	1	7	low	.	.	.	.	.	ENSG00000182606.17	ENSG00000139364.10	.	.	upstream	upstream	mismatches(1)	.	.	.
KIAA1217	TMEM132B	+/.	+/.	chr10:24208941	chr12:125495237	5'UTR	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000120549.18	ENSG00000139364.10	.	.	upstream	upstream	mismatches(1)	.	.	.
PSMD13(3232),NLRP6(22191)	TMEM132B	./.	+/.	chr11:256216	chr12:125495237	intergenic	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	.	ENSG00000139364.10	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916410	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916411	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916414	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916603	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916382	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916405	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916406	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916416	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916408	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916411	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916411	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916412	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916412	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916413	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916415	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916416	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916416	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916403	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916603	chr3:65729136	intron	intron	translocation	0	0	0	18	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916382	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916406	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916409	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
AC092131.1	AC092131.1	+/.	+/.	chr16:64527333	chr16:64527382	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000259846.1	ENSG00000259846.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481690	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16364),AC016134.1(9504)	./.	./.	chr15:41599884	chr15:41599953	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL157778.1	AL157778.1	+/.	+/.	chrX:98484517	chrX:98484569	intron	intron	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	ENSG00000281566.3	ENSG00000281566.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077775	chrX:11077784	intron	intron	duplication/ITD	0	0	0	28	24	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916560	chr21:8400266	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	GL000220.1:160675	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916561	GL000220.1:160675	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916560	GL000220.1:160675	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916559	GL000220.1:116703	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916560	GL000220.1:116703	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8400266	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916560	chr21:8444501	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916554	chr21:8444501	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8400266	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916554	chr21:8217231	intron	intron	translocation/5'-5'	0	0	0	1606	34	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8217231	intron	intron	translocation/5'-5'	0	0	0	1606	34	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916561	chr21:8400266	intron	intron	translocation/5'-5'	0	0	0	1588	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AC040174.1	AC040174.1	-/.	-/.	chr16:63185905	chr16:63185980	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000261502.4	ENSG00000261502.4	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CALM1P2(62933),AC073347.1(19127)	CALM1P2(62970),AC073347.1(19090)	./.	./.	chr7:55323189	chr7:55323226	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TUBBP11(126442),RAP1BP2(305685)	TUBBP11(126497),RAP1BP2(305630)	./.	./.	chr3:103757354	chr3:103757409	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL136967.2(25691),FOXP4-AS1(62601)	AL136967.2(25706),FOXP4-AS1(62586)	./.	./.	chr6:41432252	chr6:41432267	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
GSK3B	GSK3B	-/.	-/.	chr3:119967779	chr3:119967861	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000082701.17	ENSG00000082701.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR2054(142872),AC104664.1(26539)	NAV2-AS4	./.	-/.	chr4:125650179	chr11:19511706	intergenic	exon	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000254622.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR2054(142871),AC104664.1(26540)	Y_RNA(32923),AC044873.1(218501)	./.	./.	chr4:125650178	chr18:78577111	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NAV2-AS4	HOXC6	-/.	+/.	chr11:19511706	chr12:54017571	exon	intron	translocation	0	0	0	5	4	low	.	.	.	.	.	ENSG00000254622.1	ENSG00000197757.8	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:116537	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:178470	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SFN(3791),GPN2(7885)	SFN(3845),GPN2(7831)	./.	./.	chr1:26868247	chr1:26868301	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565344	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565347	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565347	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565347	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565345	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(3)	.	.	.
AL139383.1	.	-/.	./.	chr13:33517098	GL000220.1:157829	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000230490.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	.	./.	./.	chr1:191185396	KI270733.1:175791	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL139383.1	.	-/.	./.	chr13:33517098	KI270733.1:130713	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000230490.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	DLG2	./.	-/.	chr1:191185396	chr11:85484188	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000150672.18	.	.	downstream	upstream	mismatches(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	FP236383.3	./.	+/.	chr1:191185396	chr21:8397434	intergenic	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139383.1	FP236383.3	-/.	+/.	chr13:33517098	chr21:8397435	intron	intron	translocation/3'-3'	0	0	0	9	76	low	.	.	.	.	.	ENSG00000230490.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139383.1	FP671120.4	-/.	+/.	chr13:33517098	chr21:8214397	intron	intron	translocation/3'-3'	0	0	0	9	77	low	.	.	.	.	.	ENSG00000230490.3	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139383.1	FP236383.3	-/.	+/.	chr13:33517098	chr21:8441655	intron	intron	translocation/3'-3'	0	0	0	9	76	low	.	.	.	.	.	ENSG00000230490.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	.	./.	./.	chr1:191185396	GL000220.1:157828	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143078	chr11:82143091	intron	intron	duplication/ITD	0	0	0	654	257	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NSRP1	NSRP1	+/.	+/.	chr17:30171977	chr17:30171988	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000126653.18	ENSG00000126653.18	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565307	chr15:81565316	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565307	chr15:81565316	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620583	chr5:110620592	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565352	chr15:81565363	intron	intron	duplication/ITD	0	0	0	0	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AGXT2	AGXT2	-/.	-/.	chr5:35028554	chr5:35028613	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000113492.14	ENSG00000113492.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
PDZRN3	AC090502.3	-/.	+/.	chr3:73528679	chr12:74170989	intron	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000121440.15	ENSG00000258320.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02663(164937),LINC02670(15725)	AC090502.3	./.	+/.	chr10:10042997	chr12:74170990	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258320.1	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR4456(18643),AC106772.1(48095)	LINC02663(164937),LINC02670(15725)	./.	./.	chr5:554525	chr10:10042997	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02663(164937),LINC02670(15725)	COMMD3(523),BMI1(270)	./.	./.	chr10:10042997	chr10:22320829	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC090502.3	DYNC1H1	+/.	+/.	chr12:74170989	chr14:101981786	exon	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000258320.1	ENSG00000197102.13	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4456(18771),AC106772.1(47967)	LINC02663(164937),LINC02670(15725)	./.	./.	chr5:554653	chr10:10042997	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618115	KI270733.1:130721	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01320	.	+/.	./.	chr2:33767498	KI270733.1:130721	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MT-RNR2	.	+/.	./.	chrM:1791	KI270733.1:130721	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01320	5_8S_rRNA(1695),FP236383.3(122015)	+/.	./.	chr2:33767498	chr21:8258628	intron	intergenic	translocation	0	0	0	11	10	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	chr21:8397443	chrM:1791	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138636	chrX:31138645	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01320	FP671120.4	+/.	+/.	chr2:33767498	chr21:8214405	intron	intron	translocation	0	0	0	11	3	low	.	.	.	.	.	ENSG00000228262.10	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	chr21:8214405	chrM:1791	intron	exon	translocation/3'-3'	0	0	0	3	.	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DHFR	DLG2	-/.	-/.	chr5:80650927	chr11:85484197	intron	intron	translocation	0	0	0	12	62	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000150672.18	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	chr5:80650927	chr21:8441663	intron	intron	translocation/3'-3'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	chr21:8441663	chrM:1791	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618115	GL000220.1:157837	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01320	.	+/.	./.	chr2:33767498	GL000220.1:157837	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MT-RNR2	.	+/.	./.	chrM:1791	GL000220.1:157837	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618115	GL000220.1:113865	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01320	.	+/.	./.	chr2:33767498	GL000220.1:113865	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618115	KI270733.1:175800	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GHR(6387),AC113368.1(873)	GHR(6396),AC113368.1(864)	./.	./.	chr5:42728265	chr5:42728274	intergenic	intergenic	duplication/ITD	0	0	0	55	17	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GHR(6387),AC113368.1(873)	MGA	./.	+/.	chr5:42728265	chr15:41656378	intergenic	intron	translocation	0	0	0	55	0	low	.	.	.	.	.	.	ENSG00000174197.16	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3527),ELMOD1(661)	./.	./.	chr11:107590331	chr11:107590430	intergenic	intergenic	duplication/ITD	0	0	0	683	646	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785685	chr2:101785784	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3837),GPN2(7839)	./.	./.	chr1:26868243	chr1:26868293	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL160154.1(214639),LINC00351(841)	BICRA	./.	+/.	chr13:85362760	chr19:47688131	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000063169.11	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	FP671120.4	-/.	+/.	chr5:80650927	chr21:8214405	intron	intron	translocation/3'-3'	0	0	0	12	3	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AL160154.1(214639),LINC00351(841)	AC010519.1	./.	+/.	chr13:85362760	chr19:47688131	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000268746.1	.	.	downstream	downstream	mismatches(1)	.	.	.
GATA6	TRPC5	+/.	-/.	chr18:22171060	chrX:111800447	5'UTR	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000141448.11	ENSG00000072315.4	.	.	upstream	upstream	mismatches(1)	.	.	.
EDIL3	MRPS21P6(45455),RPS27P18(261294)	-/.	./.	chr5:84383953	chr10:125212392	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164176.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	chr21:8216920	chr21:8399951	intron	intron	inversion/3'-3'	0	0	0	603	729	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916559	chr21:8400266	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8399951	chr21:8444189	intron	intron	inversion/3'-3'	0	0	0	729	765	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8399954	GL000220.1:160360	intron	intergenic	translocation	0	0	0	729	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RNU6-440P(65122),AC069148.1(40105)	.	./.	./.	chr2:201992665	GL000220.1:116388	intergenic	intergenic	translocation	0	0	0	2	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8399954	GL000220.1:116388	intron	intergenic	translocation	0	0	0	729	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
.	.	./.	./.	GL000220.1:160360	KI270733.1:178325	intergenic	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565307	chr15:81565316	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
.	.	./.	./.	GL000220.1:116388	KI270733.1:178325	intergenic	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8444186	KI270733.1:178325	intron	intergenic	translocation	0	0	0	765	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8399951	KI270733.1:178325	intron	intergenic	translocation	0	0	0	729	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
.	.	./.	./.	GL000220.1:116388	KI270733.1:133246	intergenic	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8399951	KI270733.1:133246	intron	intergenic	translocation	0	0	0	729	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
.	.	./.	./.	GL000220.1:160360	GL000220.1:160363	intergenic	intergenic	inversion	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8399954	chr21:8444186	intron	intron	inversion/3'-3'	0	0	0	729	765	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
.	.	./.	./.	GL000220.1:116388	GL000220.1:160363	intergenic	intergenic	inversion	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8444186	GL000220.1:160363	intron	intergenic	translocation	0	0	0	765	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
.	.	./.	./.	GL000220.1:116388	GL000220.1:116391	intergenic	intergenic	inversion	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8444186	GL000220.1:116391	intron	intergenic	translocation	0	0	0	765	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8399951	chr21:8399954	intron	intron	inversion/3'-3'	0	0	0	729	729	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	upstream	hairpin(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481630	chr17:39481700	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150870	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
KRT8P37(31729),CHCHD3P1(73098)	KRT8P37(31792),CHCHD3P1(73035)	./.	./.	chr10:8546835	chr10:8546898	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520831	chr7:30520924	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565301	chr15:81565310	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565301	chr15:81565310	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565301	chr15:81565310	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
SLC39A14	IGH@-ext	+/.	-/.	chr8:22396584	chr14:106419215	intron	exon	translocation/3'-3'	0	0	0	0	86	low	.	.	.	.	.	ENSG00000104635.15	IGH.g@-ext	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117448	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
FAM174A(65489),AC027315.1(1882)	KMT2C	./.	-/.	chr5:100652230	chr7:152435462	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000055609.20	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC39A14	TCF7L2	+/.	+/.	chr8:22396448	chr10:113117448	intron	intron	translocation/5'-5'	0	0	0	0	254	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	TCF7L2	+/.	+/.	chr8:22396580	chr10:113117434	intron	intron	translocation/5'-5'	0	0	0	308	266	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916414	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
SLC39A14	TCF7L2	+/.	+/.	chr8:22396495	chr10:113117434	intron	intron	translocation/5'-5'	0	0	0	71	266	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
TCF7L2	IGH@-ext	+/.	-/.	chr10:113117389	chr14:106419215	intron	exon	translocation	0	0	0	197	86	low	.	.	.	.	.	ENSG00000148737.17	IGH.g@-ext	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	TCF7L2	+/.	+/.	chr8:22396599	chr10:113117409	intron	intron	translocation/5'-5'	0	0	0	308	266	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419126	chr14:106419215	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419126	chr14:106419215	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419126	chr14:106419215	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312081	chr11:22312098	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664205	chr19:30664218	intron	intron	duplication/ITD	0	0	0	35	0	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	low_entropy(2)	.	.	.
SEPTIN8	SEPTIN8	-/.	-/.	chr5:132788158	chr5:132788228	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000164402.14	ENSG00000164402.14	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC114485.1(331898),AC099567.1(41794)	AC114485.1(331953),AC099567.1(41739)	./.	./.	chr1:102721528	chr1:102721583	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR4283-1(28273),TNRC18P3(7751)	MIR4283-1(28317),TNRC18P3(7707)	./.	./.	chr7:56984137	chr7:56984181	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16351),AC016134.1(9517)	./.	./.	chr15:41599884	chr15:41599940	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336177	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SVIL	SVIL	-/.	-/.	chr10:29509321	chr10:29509378	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000197321.15	ENSG00000197321.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL139020.1(12712),AL133167.1(58395)	AL139020.1(12723),AL133167.1(58384)	./.	./.	chr14:95770368	chr14:95770379	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU6-138P(191628),KCNH8(1833)	TUBGCP2	./.	-/.	chr3:19146677	chr10:133303981	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000130640.14	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	SIDT1	+/.	+/.	chr2:32916554	chr3:113580787	intron	intron	translocation	0	0	0	1606	5	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000072858.11	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SIDT1	+/.	+/.	chr2:32916555	chr3:113580787	intron	intron	translocation	0	0	0	1606	5	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000072858.11	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SIDT1	+/.	+/.	chr2:32916593	chr3:113580787	intron	intron	translocation	0	0	0	46	5	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000072858.11	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SIDT1	+/.	+/.	chr2:32916508	chr3:113580787	intron	intron	translocation	0	0	0	1644	5	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000072858.11	.	.	downstream	upstream	low_entropy	.	.	.
LINC01503	.	+/.	./.	chr9:129355193	GL000220.1:114261	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000233901.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01503	.	+/.	./.	chr9:129355193	KI270733.1:131117	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000233901.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01503	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	chr9:129355193	chr21:8259024	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000233901.6	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01503	FP236383.3	+/.	+/.	chr9:129355193	chr21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000233901.6	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01503	FP671120.4	+/.	+/.	chr9:129355193	chr21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000233901.6	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
TLK1(3084),METTL8(83007)	TLK1(3127),METTL8(82964)	./.	./.	chr2:171234398	chr2:171234441	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15027),LRCH1(22183)	./.	./.	chr13:46530929	chr13:46530985	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683464	chr15:81683473	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683464	chr15:81683473	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683464	chr15:81683473	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661292	chr4:152661301	intron	intron	duplication/ITD	0	0	0	99	93	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691783	intron	intron	duplication/ITD	0	0	0	31	22	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638073	chr7:116638082	intron	intron	duplication/ITD	0	0	0	119	117	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143088	chr11:82143096	intron	intron	duplication/ITD	0	0	0	748	257	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01720	LINC01720	+/.	+/.	chr1:190706674	chr1:190706734	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000231175.1	ENSG00000231175.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RAB6A	RAB6A	-/.	-/.	chr11:73705768	chr11:73705803	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000175582.20	ENSG00000175582.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC117522.1(114766),AC010486.1(67188)	LINC02620	./.	-/.	chr5:85352840	chr10:104479905	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AC078909.2(1312),Metazoa_SRP(105321)	AC078909.2(1355),Metazoa_SRP(105278)	./.	./.	chr15:37111296	chr15:37111339	intergenic	intergenic	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LPGAT1	LINC01432(143327),AL035258.1(2573)	-/.	./.	chr1:211762425	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000123684.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01432(143327),AL035258.1(2573)	Z97192.4(46471),AL023802.1(6614)	./.	./.	chr20:22217981	chr22:49711439	intergenic	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092994.1	LINC01432(143325),AL035258.1(2575)	-/.	./.	chr3:154520849	chr20:22217979	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000243861.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AGBL4	LINC01432(143326),AL035258.1(2574)	-/.	./.	chr1:48923825	chr20:22217980	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000186094.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC138123.1	LINC01432(143327),AL035258.1(2573)	-/.	./.	chr12:93029001	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000257322.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SNX33	LINC01432(143327),AL035258.1(2573)	+/.	./.	chr15:75653278	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000173548.9	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DTHD1	SHANK2	+/.	-/.	chr4:36288210	chr11:70495160	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197057.10	ENSG00000162105.20	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565304	chr15:81565313	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
NXF2(27605),NXF2B(6069)	NXF2(27616),NXF2B(6058)	./.	./.	chrX:102354327	chrX:102354338	intergenic	intergenic	duplication/ITD	0	0	0	55	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236813	chr15:33236832	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
POM121	POM121	+/.	+/.	chr7:72894600	chr7:72894683	intron	intron	duplication/ITD	0	0	0	0	19	low	.	.	.	.	.	ENSG00000196313.11	ENSG00000196313.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	APTX	+/.	-/.	chr2:32916556	chr9:33024879	intron	5'UTR	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000137074.20	.	.	downstream	downstream	mismatches	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16339),AC016134.1(9529)	./.	./.	chr15:41599884	chr15:41599928	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
PSME2P2(14117),AL161421.1(189023)	PSME2P2(14130),AL161421.1(189010)	./.	./.	chr13:48785944	chr13:48785957	intergenic	intergenic	duplication/ITD	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LBH	LBH	+/.	+/.	chr2:30304937	chr2:30304950	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000213626.13	ENSG00000213626.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC002460.2	AC002460.2	+/.	+/.	chr4:148649048	chr4:148649089	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000287292.1	ENSG00000287292.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC011509.2	AC011509.2	-/.	-/.	chr19:14274827	chr19:14274865	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000267723.1	ENSG00000267723.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDK5P1(3507),AC016405.3(6314)	CDK5P1(3564),AC016405.3(6257)	./.	./.	chr8:122773657	chr8:122773714	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458067	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736263	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396370	chr10:104479897	intron	intron	duplication/3'-3'	0	0	0	217	988	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396370	chr10:104479905	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	low_entropy	.	.	.
ZCCHC14	TEKT4P2(1496),CR381653.1(193765)	-/.	./.	chr16:87420184	chr21:9131248	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	GL000194.1:116551	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
EPS15P1(97930),AC004870.4(9252)	ZCCHC14	./.	-/.	chr7:46881373	chr16:87420184	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000140948.13	.	.	downstream	upstream	mismatches(1)	.	.	.
MATN2	ZCCHC14	+/.	-/.	chr8:97956088	chr16:87420184	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132561.14	ENSG00000140948.13	.	.	downstream	upstream	mismatches(1)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	KI270743.1:66739	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	GL000218.1:98933	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	KI270751.1:75192	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ZCCHC14	AC138776.1(268818),FRG1GP(423290)	-/.	./.	chr16:87420184	chr22:12179176	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ZCCHC14	CR381572.1(56006),LINC01666(1509)	-/.	./.	chr16:87420184	chr21:8757568	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	KI270722.1:66131	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	GL000009.2:126319	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396373	chr10:104396386	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NGB	NGB	-/.	-/.	chr14:77269664	chr14:77269726	intron	intron	duplication/ITD	0	0	0	11	20	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479884	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
C19orf12	CCNE1	-/-	+/-	chr19:29714026	chr19:29812128	intron	5'UTR	deletion/read-through/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000131943.18	ENSG00000105173.14	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521014	chr16:71521073	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EFHC1	EFHC1	+/.	+/.	chr6:52481505	chr6:52481520	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000096093.16	ENSG00000096093.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
DDX6P2(70731),AL445207.1(54989)	DDX6P2(70759),AL445207.1(54961)	./.	./.	chr13:86347993	chr13:86348021	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150859	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150861	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150863	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150862	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150867	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193773	chr12:16193840	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308659	chr3:19308668	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
AC090103.1	AC090103.1	-/.	-/.	chr8:25838189	chr8:25838202	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000254178.1	ENSG00000254178.1	.	.	upstream	downstream	duplicates(9),low_entropy(3)	.	.	.
AC025470.2	FP671120.4	+/.	+/.	chr5:57533339	chr21:8214792	exon	intron	translocation/3'-3'	0	0	0	6	2358	low	.	.	.	.	.	ENSG00000250961.2	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
RGS12	FP671120.4	+/+	+/+	chr4:3386018	chr21:8214792	exon	intron	translocation	0	0	0	0	2358	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025470.2	FP236383.3	+/.	+/.	chr5:57533339	chr21:8397826	exon	intron	translocation/3'-3'	0	0	0	6	450	low	.	.	.	.	.	ENSG00000250961.2	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025470.2	.	+/.	./.	chr5:57533339	GL000220.1:114258	exon	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	ENSG00000250961.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RGS12	.	+/+	./+	chr4:3386018	GL000220.1:114258	exon	intergenic	translocation	0	0	0	0	.	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ZCCHC14	AC138776.1(65350),FRG1GP(626758)	-/.	./.	chr16:87420184	chr22:11975708	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL354707.1	LINC02620	+/.	-/.	chr9:6721304	chr10:104479810	intron	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	ENSG00000225489.7	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	CLCN4	-/.	+/.	chr10:104479813	chrX:10175855	intron	intron	translocation	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000073464.13	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR1263(108518),LINC01323(390804)	LINC02620	./.	-/.	chr3:164280074	chr10:104479810	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02762(7311),LINC02763(23273)	-/.	./.	chr10:104479810	chr11:112369845	intron	intergenic	translocation	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	LINC02620	./.	-/.	chr7:39505425	chr10:104479852	intergenic	intron	translocation	0	0	0	23	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
NFIA	LINC02620	+/.	-/.	chr1:61137930	chr10:104479810	intron	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	ENSG00000162599.17	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	AL161716.1(85434),Metazoa_SRP(128499)	-/.	./.	chr10:104479810	chr13:34782046	intron	intergenic	translocation	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ROBO1	LINC02620	-/.	-/.	chr3:79388366	chr10:104479809	intron	intron	translocation/5'-5'	0	0	0	0	984	low	.	.	.	.	.	ENSG00000169855.20	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC01260(27279),KCNK15-AS1(4115)	-/.	./.	chr10:104479810	chr20:44690777	intron	intergenic	translocation	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	AL023574.1(159230),MAOA(57020)	-/.	./.	chr10:104479809	chrX:43597887	intron	intergenic	translocation	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL35AP3(1677),NHEG1(6271)	LINC02620	./.	-/.	chr6:136975894	chr10:104479809	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479810	chr10:104479825	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(21),low_entropy(21)	.	.	.
RUNX1	RUNX1	-/.	-/.	chr21:35092998	chr21:35093047	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000159216.19	ENSG00000159216.19	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FAT1(23081),AC108865.1(141166)	AC022523.1	./.	-/.	chr4:186749803	chr15:98145089	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259199.2	.	.	upstream	upstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	ATG2A	./.	-/.	chr4:186749803	chr11:64909664	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000110046.13	.	.	upstream	upstream	mismatches(1)	.	.	.
CD81	GRPEL2P1(60345),AL162573.1(102670)	+/+	./+	chr11:2377523	chr13:89039130	5'UTR	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TGFB1I1	AL353600.2(8787),LINC02628(179209)	+/+	./-	chr16:31472185	chr10:33399722	5'UTR	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000140682.19	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCA	AL353600.2(8787),LINC02628(179209)	+/+	./-	chr17:66302744	chr10:33399722	5'UTR	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000154229.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CNIH2	ITGAD	+/+	+/+	chr11:66278295	chr16:31416978	5'UTR	intron	translocation	0	0	0	0	6	low	.	.	|Integrin_alpha(34%),Integrin_alpha_cytoplasmic_region(100%)	.	.	ENSG00000174871.11	ENSG00000156886.12	.	.	downstream	upstream	mismatches(1)	.	.	.
TGFB1I1	ITGAD	+/+	+/+	chr16:31472185	chr16:31416978	5'UTR	intron	duplication	0	0	0	1	6	low	.	.	|Integrin_alpha(34%),Integrin_alpha_cytoplasmic_region(100%)	.	.	ENSG00000140682.19	ENSG00000156886.12	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKCA	ITGAD	+/+	+/+	chr17:66302744	chr16:31416978	5'UTR	intron	translocation	0	0	0	8	6	low	.	.	|Integrin_alpha(34%),Integrin_alpha_cytoplasmic_region(100%)	.	.	ENSG00000154229.12	ENSG00000156886.12	.	.	downstream	upstream	mismatches(1)	.	.	.
TGFB1I1	CEP112	+/+	-/+	chr16:31472185	chr17:66186033	5'UTR	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000140682.19	ENSG00000154240.17	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKCA	CEP112	+/+	-/+	chr17:66302744	chr17:66186033	5'UTR	intron	duplication/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	ENSG00000154240.17	.	.	downstream	upstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	ITGAD	./.	+/.	chr1:47437186	chr16:31416978	intergenic	intron	translocation	0	0	0	8	6	low	.	.	.	.	.	.	ENSG00000156886.12	.	.	downstream	upstream	mismatches(1)	.	.	.
CD81	CEP112	+/+	-/+	chr11:2377523	chr17:66186033	5'UTR	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	ENSG00000154240.17	.	.	downstream	upstream	mismatches(1)	.	.	.
TGFB1I1	GRPEL2P1(60345),AL162573.1(102670)	+/+	./+	chr16:31472185	chr13:89039130	5'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000140682.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CD81	AL353600.2(8787),LINC02628(179209)	+/+	./-	chr11:2377523	chr10:33399722	5'UTR	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000110651.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL133372.2	SGSM1	-/.	+/.	chr14:30207314	chr22:24806515	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000248975.2	ENSG00000167037.19	.	.	upstream	upstream	mismatches(1)	.	.	.
ADAMTS7	ZNF337-AS1	-/.	+/.	chr15:78807998	chr20:25629150	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000136378.15	ENSG00000213742.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AL133372.2	LRRC4B	-/.	-/.	chr14:30207314	chr19:50531201	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248975.2	ENSG00000131409.13	.	.	upstream	upstream	mismatches(1)	.	.	.
DTX2P1	AL133372.2	+/.	-/.	chr7:76994465	chr14:30207314	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186704.9	ENSG00000248975.2	.	.	upstream	upstream	mismatches(1)	.	.	.
DTX2P1	COL18A1	+/.	+/.	chr7:76994465	chr21:45478842	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186704.9	ENSG00000182871.16	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4B	COL18A1	-/.	+/.	chr19:50531201	chr21:45478842	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131409.13	ENSG00000182871.16	.	.	upstream	upstream	mismatches(1)	.	.	.
CDHR5	CCDC157	-/.	+/.	chr11:618270	chr22:30356959	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000099834.19	ENSG00000187860.10	.	.	upstream	upstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824759	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	145	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824747	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	145	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(1)	.	.	.
AL078604.4	AL078604.4	-/.	-/.	chr6:159621170	chr6:159621215	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000286533.1	ENSG00000286533.1	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AP000845.1(25414),AP000915.1(21045),COLEC12(21045)	AP000845.1(25429),AP000915.1(21030),COLEC12(21030)	./.	./.	chr18:295692	chr18:295707	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
MAP3K7(430071),AL080284.1(373170)	MAP3K7(430086),AL080284.1(373155)	./.	./.	chr6:91017143	chr6:91017158	intergenic	intergenic	duplication/ITD	0	0	0	10	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01438(23194),MIR297(40044)	AC012060.1(92676),LINC02248(36443)	./.	./.	chr4:110820538	chr15:26358594	intergenic	intergenic	translocation	0	0	0	1	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ERI3	LINC01438(23194),MIR297(40044)	-/.	./.	chr1:44320094	chr4:110820538	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000117419.16	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC100849.1	AP001599.1	-/.	+/.	chr8:19172720	chr21:26914103	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000253557.6	ENSG00000223563.1	.	.	downstream	downstream	mismatches(1)	.	.	.
BMPER	BMPER	+/.	+/.	chr7:34065210	chr7:34065219	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000164619.10	ENSG00000164619.10	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	chr6:93664698	chr6:93664797	intron	intron	duplication/ITD	0	0	0	6	8	low	.	.	.	.	.	ENSG00000287683.1	ENSG00000287683.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL591519.1	AL591519.1	+/.	+/.	chr6:93664694	chr6:93664792	intron	intron	duplication/ITD	0	0	0	6	8	low	.	.	.	.	.	ENSG00000287683.1	ENSG00000287683.1	.	.	upstream	downstream	duplicates(4)	.	.	.
AC104451.2(88859),AC104297.1(37205)	PPP1R1AP2(177279),ANKRD26P1(10379546)	./.	./.	chr3:17834524	chr16:36089795	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01320	DLG2	+/.	-/.	chr2:33767498	chr11:85484197	intron	intron	translocation/5'-5'	0	0	0	11	62	low	.	.	.	.	.	ENSG00000228262.10	ENSG00000150672.18	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01102(7154),AC013402.2(40920)	PPP1R1AP2(177280),ANKRD26P1(10379545)	./.	./.	chr2:104539901	chr16:36089796	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02554	AL020994.1	+/.	-/.	chr22:27316605	chr22:27316616	intron	intron	duplication/3'-3'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000223726.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL020994.1	AL020994.1	-/.	-/.	chr22:27316605	chr22:27316616	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000223726.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KCNMB2-AS1	KCNMB2-AS1	-/.	-/.	chr3:178655098	chr3:178655107	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000237978.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DOCK10(352123),NYAP2(5119)	LINC00316(6198),MTCO1P3(28003)	./.	./.	chr2:225394591	chr21:45348188	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy(1)	.	.	.
AC094105.2(149676),LINC01377(60204)	AC094105.2(149687),LINC01377(60193)	./.	./.	chr5:3117631	chr5:3117642	intergenic	intergenic	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC115100.1(211620),AC090506.1(87582)	AC115100.1(211669),AC090506.1(87533)	./.	./.	chr18:30625693	chr18:30625742	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC115100.1(211620),AC090506.1(87582)	AC115100.1(211665),AC090506.1(87537)	./.	./.	chr18:30625693	chr18:30625738	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC115100.1(211620),AC090506.1(87582)	AC115100.1(211633),AC090506.1(87569)	./.	./.	chr18:30625693	chr18:30625706	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
AC044798.3	AC044798.3	-/.	-/.	chr16:49155816	chr16:49155859	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000287469.1	ENSG00000287469.1	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC044798.3	AC115100.1(211669),AC090506.1(87533)	-/.	./.	chr16:49155816	chr18:30625742	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC044798.3	AC115100.1(211665),AC090506.1(87537)	-/.	./.	chr16:49155816	chr18:30625738	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC044798.3	AC044798.3	-/.	-/.	chr16:49155816	chr16:49155831	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000287469.1	ENSG00000287469.1	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
AC044798.3	AC115100.1(211663),AC090506.1(87539)	-/.	./.	chr16:49155816	chr18:30625736	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TAB2(11972),ZC3H12D(23210)	TAB2(11981),ZC3H12D(23201)	./.	./.	chr6:149423585	chr6:149423594	intergenic	intergenic	duplication/ITD	0	0	0	295	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
ZNF638	AC011503.1(44636),RNA5-8SP4(1687)	+/.	./.	chr2:71338689	chr19:24002671	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000075292.19	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRN2(7303),RNA5SP75(14279)	LRRN2(7394),RNA5SP75(14188)	./.	./.	chr1:204693041	chr1:204693132	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565355	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565355	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GHR(6368),AC113368.1(892)	GHR(6383),AC113368.1(877)	./.	./.	chr5:42728246	chr5:42728261	intergenic	intergenic	duplication/ITD	0	0	0	19	17	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491179	chr11:105491188	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331427	chr19:55331436	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AL627095.1(5384),ZNF669(8511)	AL627095.1(5449),ZNF669(8446)	./.	./.	chr1:247091451	chr1:247091516	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL627095.1(5384),ZNF669(8511)	AL627095.1(5451),ZNF669(8444)	./.	./.	chr1:247091451	chr1:247091518	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736203	chr3:64736220	intron	intron	duplication/ITD	0	0	0	974	81	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(7),merge_adjacent	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956911	chr17:75956924	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TMEM132B(44067),AC005252.2(102224)	TMEM132B(44124),AC005252.2(102167)	./.	./.	chr12:125706444	chr12:125706501	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956921	chr17:75956930	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916403	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916407	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916409	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916410	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
CTNNA2	CTNNA2	+/.	+/.	chr2:79384373	chr2:79384431	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000066032.19	ENSG00000066032.19	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683458	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683458	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683458	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683472	chr15:81683481	intron	intron	duplication/5'-5'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683472	chr15:81683481	intron	intron	duplication/5'-5'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
NXF2(27610),NXF2B(6064)	NXF2(27619),NXF2B(6055)	./.	./.	chrX:102354332	chrX:102354341	intergenic	intergenic	duplication/ITD	0	0	0	55	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092348	chr11:88092437	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683472	chr15:81683481	intron	intron	duplication/3'-3'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683472	chr15:81683481	intron	intron	duplication/ITD	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683472	chr15:81683481	intron	intron	duplication	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683472	chr15:81683481	intron	intron	duplication/ITD	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396498	chr8:22396596	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396484	chr8:22396582	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638081	chr7:116638090	intron	intron	duplication/ITD	0	0	0	119	117	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
SFN(3787),GPN2(7889)	SFN(3843),GPN2(7833)	./.	./.	chr1:26868243	chr1:26868299	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
TEX41	TEX41	+/.	+/.	chr2:145113860	chr2:145113909	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000226674.11	ENSG00000226674.11	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
GRPEL2P1(60317),AL162573.1(102698)	GRPEL2P1(60332),AL162573.1(102683)	./.	./.	chr13:89039102	chr13:89039117	intergenic	intergenic	duplication/ITD	0	0	0	20	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
IPO9-AS1	NAV1	-/.	+/.	chr1:201702673	chr1:201702686	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000134369.15	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
NAV1	NAV1	+/.	+/.	chr1:201702673	chr1:201702686	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000134369.15	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176187	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397820	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214786	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446343	chr12:50446358	intron	intron	duplication/ITD	0	0	0	86	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02590(3058),RNU6-242P(44548)	LINC02590(3067),RNU6-242P(44539)	./.	./.	chr2:43046840	chr2:43046849	intergenic	intergenic	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GTF2IP1(19743),SPDYE13(23804)	RPTOR	./.	+/.	chr7:75257439	chr17:80890509	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000141564.15	.	.	downstream	downstream	mismatches(1)	.	.	.
SPDYE10P(24128),GTF2IP4(19670)	RPTOR	./.	+/.	chr7:73135268	chr17:80890509	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000141564.15	.	.	upstream	downstream	mismatches(1)	.	.	.
ANK1	RPL21P103(73984),AC025578.1(75747)	-/.	./.	chr8:41810916	chr12:58318849	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000029534.21	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ADAM19	COP1P1(12203),RN7SL50P(45324)	-/.	./.	chr5:157536946	chr18:8426507	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135074.16	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RPTOR	CTNNBL1	+/.	+/.	chr17:80890509	chr20:37845415	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000141564.15	ENSG00000132792.19	.	.	downstream	upstream	mismatches(1)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9775),AC108063.2(20080)	./.	./.	chr4:16094104	chr4:16094153	intergenic	intergenic	duplication/ITD	0	0	0	54	54	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096623	chr2:141096674	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(204),AC106894.1(74393)	./.	./.	chr4:16898832	chr4:16898882	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	chr8:73820101	chr21:8444603	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	FP671120.4	-/.	+/.	chr8:73820101	chr21:8217333	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01791	TSHZ3	+/.	-/.	chr19:31183179	chr19:31183242	intron	intron	duplication/3'-3'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000121297.8	.	.	upstream	downstream	duplicates(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820101	GL000220.1:116805	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	H3C10	./.	+/.	chr3:103984260	chr6:27810927	intergenic	3'UTR	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000278828.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008269.1	UBE2W	+/.	-/.	chr2:206862122	chr8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321.2	ENSG00000104343.21	.	.	downstream	upstream	mismatches(1)	.	.	.
EMC10(1159),JOSD2(13968)	EMC10(1182),JOSD2(13945)	./.	./.	chr19:50492030	chr19:50492053	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092342	chr11:88092439	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092342	chr11:88092437	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392891	chr11:88092445	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392891	chr11:88092443	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092342	chr11:88092445	intron	intron	duplication	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092342	chr11:88092443	intron	intron	duplication	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
CAMKMT	RAB3A	+/.	-/.	chr2:44362604	chr19:18198266	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143919.15	ENSG00000105649.10	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4432HG	PACRG	-/.	+/.	chr2:60395493	chr6:162736516	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228590.2	ENSG00000112530.11	.	.	upstream	downstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638062	chr7:116638073	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TSHZ3	TSHZ3	-/.	-/.	chr19:31183179	chr19:31183242	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000121297.8	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520835	chr7:30520923	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117384	chr10:113117393	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GTPBP3(6426),PLVAP(2293)	GTPBP3(6506),PLVAP(2213)	./.	./.	chr19:17349157	chr19:17349237	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNAB1	TSHZ2	+/.	+/.	chr3:156535474	chr20:53094116	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000169282.18	ENSG00000182463.16	.	.	downstream	upstream	mismatches(1)	.	.	.
CDH4	AL928596.1(33049),AL807740.1(92494)	+/.	./.	chr20:61562942	chrX:20350832	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179242.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	.	./.	./.	chr1:191185396	GL000220.1:113856	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC091607.2	AL928596.1(33048),AL807740.1(92495)	+/.	./.	chr3:156535474	chrX:20350831	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287916.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BNC2	BNC2	-/-	-/-	chr9:16412719	chr9:16412766	3'UTR	3'UTR	duplication/ITD	0	0	0	21	21	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068.18	ENSG00000173068.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNAB1	AL928596.1(33048),AL807740.1(92495)	+/.	./.	chr3:156535474	chrX:20350831	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000169282.18	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091607.2	AL390763.1(199664),LINC02667(392932)	+/.	./.	chr3:156535474	chr10:128519878	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287916.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNAB1	AL390763.1(199664),LINC02667(392932)	+/.	./.	chr3:156535474	chr10:128519878	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000169282.18	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SWAP70	SWAP70	+/.	+/.	chr11:9675312	chr11:9675403	intron	intron	duplication/ITD	0	0	0	1	41	low	.	.	.	.	.	ENSG00000133789.15	ENSG00000133789.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
UTRN	AC025881.1(129815),CARS1P2(342927)	+/.	./.	chr6:144648111	chr8:114448726	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCEANC2(4789),CDCP2(15660)	COPZ1	./.	+/.	chr1:54117308	chr12:54304547	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111481.10	.	.	upstream	upstream	mismatches(1)	.	.	.
GDA	LINC02663(164937),LINC02670(15725)	+/.	./.	chr9:72149977	chr10:10042997	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000119125.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCEANC2(4789),CDCP2(15660)	AC078778.1	./.	+/.	chr1:54117308	chr12:54304547	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258344.1	.	.	upstream	upstream	mismatches(1)	.	.	.
BBS9	COPZ1	+/.	+/.	chr7:33585948	chr12:54304542	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000122507.21	ENSG00000111481.10	.	.	downstream	upstream	mismatches(1)	.	.	.
BBS9	AC078778.1	+/.	+/.	chr7:33585948	chr12:54304542	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000122507.21	ENSG00000258344.1	.	.	downstream	upstream	mismatches(1)	.	.	.
BBS9	INTS9	+/.	-/.	chr7:33585948	chr8:28870755	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000122507.21	ENSG00000104299.15	.	.	downstream	upstream	mismatches(1)	.	.	.
BBS9	AXIN2	+/.	-/.	chr7:33585948	chr17:65557693	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000122507.21	ENSG00000168646.13	.	.	downstream	upstream	mismatches(1)	.	.	.
STMN4(23462),TRIM35(3004)	AXIN2	./.	-/.	chr8:27281882	chr17:65557693	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000168646.13	.	.	upstream	upstream	mismatches(1)	.	.	.
MTR	INTS9	+/+	-/+	chr1:236893463	chr8:28870755	exon	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	B12_binding_domain(100%),Homocysteine_S-methyltransferase(100%),Pterin_binding_enzyme(100%),Vitamin_B12_dependent_methionine_synthase__activation_domain(36%)|	.	.	ENSG00000116984.15	ENSG00000104299.15	.	.	downstream	upstream	mismatches(1)	.	.	.
MTR	SVIL(151863),AL353093.1(2210)	+/+	./-	chr1:236893463	chr10:29888822	exon	intergenic	translocation	0	0	0	4	0	low	.	.	B12_binding_domain(100%),Homocysteine_S-methyltransferase(100%),Pterin_binding_enzyme(100%),Vitamin_B12_dependent_methionine_synthase__activation_domain(36%)|	.	.	ENSG00000116984.15	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MTR	AC025881.1(129815),CARS1P2(342927)	+/+	./-	chr1:236893463	chr8:114448726	exon	intergenic	translocation	0	0	0	4	0	low	.	.	B12_binding_domain(100%),Homocysteine_S-methyltransferase(100%),Pterin_binding_enzyme(100%),Vitamin_B12_dependent_methionine_synthase__activation_domain(36%)|	.	.	ENSG00000116984.15	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GRM7	COPZ1	+/.	+/.	chr3:7300456	chr12:54304542	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196277.16	ENSG00000111481.10	.	.	downstream	upstream	mismatches(1)	.	.	.
GRM7	INTS9	+/.	-/.	chr3:7300456	chr8:28870755	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196277.16	ENSG00000104299.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02159(139063),GABRB2(210740)	Y_RNA(32923),AC044873.1(218501)	./.	./.	chr5:161077689	chr18:78577111	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GRM7	AXIN2	+/.	-/.	chr3:7300456	chr17:65557693	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196277.16	ENSG00000168646.13	.	.	downstream	upstream	mismatches(1)	.	.	.
FSTL4	COPZ1	-/.	+/.	chr5:133448694	chr12:54304542	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053108.17	ENSG00000111481.10	.	.	upstream	upstream	mismatches(1)	.	.	.
FSTL4	AC078778.1	-/.	+/.	chr5:133448694	chr12:54304542	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053108.17	ENSG00000258344.1	.	.	upstream	upstream	mismatches(1)	.	.	.
FSTL4	SVIL(151863),AL353093.1(2210)	-/.	./.	chr5:133448694	chr10:29888822	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053108.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UTRN	INTS9	+/.	-/.	chr6:144648111	chr8:28870755	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000104299.15	.	.	upstream	upstream	mismatches(1)	.	.	.
EGF	EGF	+/.	+/.	chr4:109919288	chr4:109919297	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000138798.13	ENSG00000138798.13	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
GPC6-AS2	GPC6	-/.	+/.	chr13:93833105	chr13:93833157	intron	intron	duplication/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000224394.1	ENSG00000183098.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPC6	GPC6-AS2	+/.	-/.	chr13:93833105	chr13:93833157	intron	intron	duplication/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000183098.11	ENSG00000224394.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPC6	GPC6	+/.	+/.	chr13:93833105	chr13:93833157	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000183098.11	ENSG00000183098.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104042.1(863601),AC061997.1(140657)	AC104042.1(863640),AC061997.1(140618)	./.	./.	chr11:37561468	chr11:37561507	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674833	chr5:20674842	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP3K7(430063),AL080284.1(373178)	MAP3K7(430119),AL080284.1(373122)	./.	./.	chr6:91017135	chr6:91017191	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
Z82209.1(161636),AL662814.1(67003)	Z82209.1(161692),AL662814.1(66947)	./.	./.	chrX:127556407	chrX:127556463	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491177	chr11:105491186	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491192	chr11:105491201	intron	intron	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GPC6-AS2	GPC6-AS2	-/.	-/.	chr13:93833099	chr13:93833156	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000224394.1	ENSG00000224394.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPC6-AS2	GPC6	-/.	+/.	chr13:93833099	chr13:93833156	intron	intron	duplication/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000224394.1	ENSG00000183098.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446347	chr12:50446356	intron	intron	duplication/ITD	0	0	0	86	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
5_8S_rRNA(1695),FP236383.3(122015)	MT-RNR2	./.	+/.	chr21:8258628	chrM:1791	intergenic	exon	translocation	0	0	0	10	.	low	.	.	.	.	.	.	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275775	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312088	chr11:22312097	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674818	chr5:20674829	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565361	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565361	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP26	ARHGAP26	+/.	+/.	chr5:142949171	chr5:142949180	intron	intron	duplication/ITD	0	0	0	9	0	low	.	.	.	.	.	ENSG00000145819.18	ENSG00000145819.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
USP9YP6	USP9YP6	-/.	-/.	chrY:17913524	chrY:17913603	intron	intron	duplication/ITD	0	0	0	32	31	low	.	.	.	.	.	ENSG00000226116.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398685	chr7:54398742	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SERPINA9	SERPINA9	-/.	-/.	chr14:94464271	chr14:94464319	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000170054.16	ENSG00000170054.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SERPINA9	AL132708.1	-/.	+/.	chr14:94464271	chr14:94464319	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000170054.16	ENSG00000256357.1	.	.	upstream	downstream	duplicates(1)	.	.	.
SERPINA9	SERPINA9	-/.	-/.	chr14:94464271	chr14:94464318	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000170054.16	ENSG00000170054.16	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL132708.1	SERPINA9	+/.	-/.	chr14:94464271	chr14:94464318	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000256357.1	ENSG00000170054.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL132708.1	AL132708.1	+/.	+/.	chr14:94464271	chr14:94464318	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000256357.1	ENSG00000256357.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PHF6(23321),HPRT1(8053)	PHF6(23370),HPRT1(8004)	./.	./.	chrX:134452112	chrX:134452161	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TSHZ2	TSHZ2	+/.	+/.	chr20:53008976	chr20:53009031	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000182463.16	ENSG00000182463.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPSAP22(5563),PARTICL(40119)	RPSAP22(5576),PARTICL(40106)	./.	./.	chr2:85497343	chr2:85497356	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
SUCLG2-AS1	SUCLG2-AS1	+/.	+/.	chr3:67792405	chr3:67792420	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000241316.8	ENSG00000241316.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC020589.1(341743),SEC63P2(179725)	AC020589.1(341795),SEC63P2(179673)	./.	./.	chr4:35308087	chr4:35308139	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CCNY	CCNY	+/.	+/.	chr10:35431396	chr10:35431457	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000108100.18	ENSG00000108100.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CCNY	CCNY	+/.	+/.	chr10:35431395	chr10:35431458	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000108100.18	ENSG00000108100.18	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674407	chr7:35674418	intron	intron	duplication/ITD	0	0	0	59	0	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674414	chr7:35674423	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC078851.1(47972),RN7SL283P(108835)	AC078851.1(47983),RN7SL283P(108824)	./.	./.	chr2:139873849	chr2:139873860	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581673	chr5:93581684	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096624	chr2:141096691	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02620	KCNH5	-/.	-/.	chr10:104479810	chr14:63042121	intron	intron	translocation/5'-5'	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000140015.20	.	.	upstream	upstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626663	chrX:18626678	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LSAMP	LSAMP	-/.	-/.	chr3:116642650	chr3:116642659	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000185565.12	ENSG00000185565.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520828	chr7:30520923	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670919	chr2:23670934	intron	intron	duplication/3'-3'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	duplicates(1)	.	.	.
AP002371.1(8127),AP003072.4(53697)	LSM14B	./.	+/.	chr11:93080158	chr20:62131771	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNQ3	TMEM132B	-/.	+/.	chr8:132364671	chr12:125495237	intron	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	ENSG00000184156.17	ENSG00000139364.10	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AP002371.1(8127),AP003072.4(53697)	./.	./.	chr2:240393940	chr11:93080158	intergenic	intergenic	translocation	0	0	0	16	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	FIBIN(9775),BBOX1(33863)	./.	./.	chr2:240393940	chr11:27006862	intergenic	intergenic	translocation	0	0	0	16	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GTF2IRD1P1	LSM14B	-/.	+/.	chr7:66824572	chr20:62131771	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000230583.7	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC022748.2	./.	+/.	chr2:240393940	chr15:78672957	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000261303.6	.	.	upstream	downstream	mismatches(1)	.	.	.
AC020741.1	U3(104497),GPC1(41723)	-/-	./+	chr4:61428174	chr2:240393940	exon	intergenic	translocation	0	0	0	0	16	low	.	.	.	.	.	ENSG00000205682.2	.	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC008014.1(15861),AC079906.1(77859)	./.	./.	chr2:240393940	chr12:46892645	intergenic	intergenic	translocation	0	0	0	16	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AL513321.1(21925),AL592466.1(602)	./.	./.	chr2:240393940	chr10:65270717	intergenic	intergenic	translocation	0	0	0	16	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC084759.3(20),AC084759.2(31977)	LSM14B	./.	+/.	chr15:53914732	chr20:62131771	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AC084759.3	LSM14B	+/+	+/+	chr15:53910829	chr20:62131771	exon	intron	translocation	0	0	0	1	0	low	.	.	|FDF_domain(19%)	.	.	ENSG00000280362.1	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025366.1(57830),AP005357.1(76639)	LSM14B	./.	+/.	chr8:110690224	chr20:62131771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFB9P3(84563),LINC01608(5539)	LSM14B	./.	+/.	chr8:110894457	chr20:62131771	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
GML	GML	+/.	+/.	chr8:142887392	chr8:142887445	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000104499.7	ENSG00000104499.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IL1RAPL2	IL1RAPL2	+/.	+/.	chrX:104786914	chrX:104786983	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000189108.13	ENSG00000189108.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96190),RORB-AS1(4783)	./.	./.	chr9:74480733	chr9:74480768	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(4)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96188),RORB-AS1(4785)	./.	./.	chr9:74480733	chr9:74480766	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96184),RORB-AS1(4789)	./.	./.	chr9:74480733	chr9:74480762	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(5)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96180),RORB-AS1(4793)	./.	./.	chr9:74480733	chr9:74480758	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96202),RORB-AS1(4771)	./.	./.	chr2:234102940	chr9:74480780	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96194),RORB-AS1(4779)	./.	./.	chr2:234102940	chr9:74480772	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96190),RORB-AS1(4783)	./.	./.	chr2:234102940	chr9:74480768	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP000842.2	AC012101.2	-/.	+/.	chr11:125904195	chr18:75459146	intron	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000255027.2	ENSG00000287281.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392796	chr1:90392889	intron	intron	duplication/ITD	0	0	0	326	334	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	same_gene	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661613	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(2)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396394	chr10:104396403	intron	intron	duplication/ITD	0	0	0	217	217	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521059	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785771	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479813	chr10:104479825	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785767	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479811	chr10:104479825	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785765	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785696	chr2:101785795	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785793	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785789	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785781	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785763	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-551P(110281),PAPSS1(44775)	.	./.	./.	chr4:107545501	KI270733.1:178744	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	IGSF1	+/.	-/.	chr21:8444603	chrX:131338235	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000147255.19	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	IGSF1	+/.	-/.	chr21:8400368	chrX:131338235	intron	intron	translocation/3'-3'	0	0	0	1	7	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000147255.19	.	.	upstream	downstream	mismatches(1)	.	.	.
IGSF1	.	-/.	./.	chrX:131338235	GL000220.1:160777	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000147255.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL110505.1(183405),ATP5MC2P2(113056)	AL110505.1(183420),ATP5MC2P2(113041)	./.	./.	chr14:49260910	chr14:49260925	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNAJA1P2(37400),GALNT13(71876)	DNAJA1P2(37415),GALNT13(71861)	./.	./.	chr2:153800046	chr2:153800061	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CRTAC1(14519),AL355301.1(31014)	CRTAC1(14571),AL355301.1(30962)	./.	./.	chr10:98045347	chr10:98045399	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC116359.1(16747),AC094105.1(25725)	FP236383.3(1401),FP236383.11(6127)	./.	./.	chr5:2805296	chr21:8456193	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	FP671120.4(5972),FP671120.10(1736)	./.	./.	chr5:2805294	chr21:8233618	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	FP236383.3	./.	+/.	chr5:2805294	chr21:8420128	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	FP236383.11(1894),FP236383.6(562)	./.	./.	chr5:2805294	chr21:8464692	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116359.1(16747),AC094105.1(25725)	.	./.	./.	chr5:2805296	KI270733.1:145499	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	KI270733.1:150534	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	KI270733.1:146190	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CNIH2	CEP112	+/+	-/+	chr11:66278295	chr17:66186033	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174871.11	ENSG00000154240.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	KI270733.1:154138	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC116359.1(16747),AC094105.1(25725)	.	./.	./.	chr5:2805296	GL000220.1:127651	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	GL000220.1:136317	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	FP236383.11(2061),FP236383.6(395)	./.	./.	chr5:2805294	chr21:8464859	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916578	chr21:8214784	intron	intron	translocation	0	0	0	1588	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916507	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916578	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916507	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916578	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916462	GL000220.1:114250	intron	intergenic	translocation	0	0	0	914	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	.	+/.	./.	chr2:32916507	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916462	KI270733.1:176185	intron	intergenic	translocation	0	0	0	914	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916578	chr21:8397818	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916507	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
STMN4(23462),TRIM35(3004)	AC078778.1	./.	+/.	chr8:27281882	chr12:54304542	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258344.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916578	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916578	chr21:8259013	intron	intergenic	translocation	0	0	0	1588	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916462	chr21:8259013	intron	intergenic	translocation	0	0	0	914	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916507	chr21:8442048	intron	intron	translocation	0	0	0	1644	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
H1-2(15015),HFE(15796)	SPPL2B	./.	+/.	chr6:26071485	chr19:2352800	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000005206.17	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00923	LINC00923	-/.	-/.	chr15:97803484	chr15:97803499	intron	intron	duplication/ITD	0	0	0	31	0	low	.	.	.	.	.	ENSG00000251209.9	ENSG00000251209.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392796	chr1:90392805	intron	intron	duplication/ITD	0	0	0	326	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PCAT1	NCOA5LP(16498),CNEP1R1(39182)	+/.	./.	chr8:126750642	chr16:49985228	intron	intergenic	translocation	0	0	0	9	20	low	.	.	.	.	.	ENSG00000253438.4	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK5P1(3560),AC016405.3(6261)	NCOA5LP(16498),CNEP1R1(39182)	./.	./.	chr8:122773710	chr16:49985228	intergenic	intergenic	translocation	0	0	0	1	20	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NCOA5LP(16498),CNEP1R1(39182)	RGN	./.	+/.	chr16:49985228	chrX:47086748	intergenic	intron	translocation	0	0	0	20	11	low	.	.	.	.	.	.	ENSG00000130988.13	.	.	upstream	upstream	mismatches(1)	.	.	.
AC004852.2(314433),GAPDHP68(110688)	NCOA5LP(16498),CNEP1R1(39182)	./.	./.	chr7:9504290	chr16:49985228	intergenic	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC046134.2	AC046134.2	+/.	+/.	chr3:139428079	chr3:139428133	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000248932.6	ENSG00000248932.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DRD2(32215),TMPRSS5(179641)	DRD2(32230),TMPRSS5(179626)	./.	./.	chr11:113507906	chr11:113507921	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280006	chr1:148280105	intron	intron	duplication/ITD	0	0	0	133	132	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864042	chr9:106864055	intron	intron	duplication/ITD	0	0	0	87	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565295	chr15:81565306	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
BTF3L4P3(112187),AL356234.2(1439)	LINC02882	./.	-/.	chr6:137656559	chr12:73881442	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000251138.7	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565295	chr15:81565306	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565295	chr15:81565306	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138688	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520847	chr7:30520927	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
UBE2FP2(4834),AC138305.1(128359)	UBE2FP2(4909),AC138305.1(128284)	./.	./.	chr16:63185905	chr16:63185980	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581669	chr5:93581680	intron	intron	duplication/ITD	0	0	0	44	0	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LDB2(161),AC106894.1(74436)	LDB2(224),AC106894.1(74373)	./.	./.	chr4:16898839	chr4:16898902	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC01122(121346),LINC01793(32596)	LINC01122(121409),LINC01793(32533)	./.	./.	chr2:59185112	chr2:59185175	intergenic	intergenic	duplication/ITD	0	0	0	12	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
LINC00486	AC068483.1(86318),LINC01854(84130)	+/.	./.	chr2:32916563	chr2:129158043	intron	intergenic	inversion	0	0	0	1588	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	low_entropy	.	.	.
LINC01122(121346),LINC01793(32596)	LINC01122(121413),LINC01793(32529)	./.	./.	chr2:59185112	chr2:59185179	intergenic	intergenic	duplication/ITD	0	0	0	12	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01122(121346),LINC01793(32596)	LINC01122(121411),LINC01793(32531)	./.	./.	chr2:59185112	chr2:59185177	intergenic	intergenic	duplication/ITD	0	0	0	12	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FXNP1(22671),NRXN3(87424)	FXNP1(22683),NRXN3(87412)	./.	./.	chr14:78082949	chr14:78082961	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565342	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396547	chr8:22396556	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117369	chr10:113117449	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	small_insert_size	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916578	chr21:8442048	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565352	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565352	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565352	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565343	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ROBO1	ROBO1	-/.	-/.	chr3:79270180	chr3:79270195	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000169855.20	ENSG00000169855.20	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565343	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565343	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565357	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565353	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	AC090517.5	+/.	-/.	chr2:32916565	chr15:56885947	intron	intron	translocation	0	0	0	1588	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000285331.2	.	.	downstream	downstream	low_entropy	.	.	.
FOXD2-AS1(2545),FOXD2(858)	AL353600.2(8787),LINC02628(179209)	./.	./.	chr1:47437186	chr10:33399722	intergenic	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	PPP1R18	+/.	-/.	chr2:32916556	chr6:30686378	intron	5'UTR	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000146112.12	.	.	downstream	downstream	mismatches	.	.	.
WDR19	WDR19	+/.	+/.	chr4:39211939	chr4:39211948	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000157796.18	ENSG00000157796.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	GSE1	+/.	+/.	chr2:32916556	chr16:85462824	intron	intron	translocation/5'-5'	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000131149.19	.	.	downstream	downstream	mismatches	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785695	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785699	chr2:101785797	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785701	chr2:101785797	intron	intron	duplication/ITD	0	0	0	765	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785703	chr2:101785797	intron	intron	duplication/ITD	0	0	0	765	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785705	chr2:101785797	intron	intron	duplication/ITD	0	0	0	765	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785681	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785683	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785687	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785691	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785693	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
SWAP70	SWAP70	+/.	+/.	chr11:9675312	chr11:9675399	intron	intron	duplication/ITD	0	0	0	1	41	low	.	.	.	.	.	ENSG00000133789.15	ENSG00000133789.15	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LHX9(23324),NEK7(198192)	AC079809.1(48790),LINC01287(161987)	./.	./.	chr1:197958802	chr7:153193378	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LHX9(23325),NEK7(198191)	ATP6AP1L	./.	+/.	chr1:197958803	chr5:82294903	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000205464.13	.	.	downstream	downstream	mismatches(1)	.	.	.
CDH17(5401),GEM(26549)	LINC01432(143327),AL035258.1(2573)	./.	./.	chr8:94222704	chr20:22217981	intergenic	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LHX9(23325),NEK7(198191)	PLXNA4	./.	-/.	chr1:197958803	chr7:132557168	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000221866.9	.	.	downstream	downstream	mismatches(1)	.	.	.
AL669942.1	TTC3	-/+	+/+	chr9:66054301	chr21:37126080	exon	CDS/splice-site	translocation/3'-3'	0	0	0	0	3	low	.	.	|E3_ubiquitin-protein_ligase_TTC3/DZIP3_domain(100%),Ring_finger_domain(100%)	.	.	ENSG00000274628.5	ENSG00000182670.13	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM95B1	TTC3	+/-	+/+	chr9:40322004	chr21:37126080	exon	CDS/splice-site	translocation/3'-3'	0	0	0	0	3	low	.	.	|E3_ubiquitin-protein_ligase_TTC3/DZIP3_domain(100%),Ring_finger_domain(100%)	.	.	ENSG00000223839.8	ENSG00000182670.13	.	.	upstream	upstream	mismatches(1)	.	.	.
LHX9(23325),NEK7(198191)	STK11	./.	+/.	chr1:197958803	chr19:1179027	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000118046.16	.	.	downstream	upstream	mismatches(1)	.	.	.
LHX9(23325),NEK7(198191)	IBA57(542),OBSCN-AS1(20704)	./.	./.	chr1:197958803	chr1:228182799	intergenic	intergenic	deletion	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092342	chr11:88092441	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
LINC02188	LAMA3	+/.	+/.	chr16:86740387	chr18:23845351	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261175.6	ENSG00000053747.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916547	chr21:8214784	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	.	+/.	./.	chr2:32916546	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916547	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785783	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916547	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916547	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916547	chr21:8259013	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	.	+/.	./.	chr2:32916520	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916520	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916520	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916520	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1644	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
UBE2W	GDA	-/.	+/.	chr8:73820101	chr9:72149978	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000119125.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916520	chr21:8442048	intron	intron	translocation	0	0	0	1644	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640185	chr2:198640194	intron	intron	duplication/ITD	0	0	0	66	65	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(3)	.	.	.
RNU1-154P(711),AC239860.2(27394)	RNU1-154P(755),AC239860.2(27350)	./.	./.	chr1:145432404	chr1:145432448	intergenic	intergenic	duplication/ITD	0	0	0	188	188	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
RGN	RGN	+/.	+/.	chrX:47086735	chrX:47086749	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000130988.13	ENSG00000130988.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
USP9YP6	USP9YP6	-/.	-/.	chrY:17913559	chrY:17913568	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000226116.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
Z93929.1(11436),MDM4P1(21580)	Z93929.1(11445),MDM4P1(21571)	./.	./.	chrX:17911769	chrX:17911778	intergenic	intergenic	duplication/ITD	0	0	0	25	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15021),LRCH1(22189)	./.	./.	chr13:46530929	chr13:46530979	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC114485.1(331900),AC099567.1(41792)	AC114485.1(331950),AC099567.1(41742)	./.	./.	chr1:102721530	chr1:102721580	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626680	chrX:18626689	intron	intron	duplication/ITD	0	0	0	84	83	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DYM	DYM	-/.	-/.	chr18:49317553	chr18:49317566	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000141627.14	ENSG00000141627.14	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691777	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	low_entropy(3)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916561	chr21:8444501	intron	intron	translocation/5'-5'	0	0	0	1588	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
Z82209.1(161634),AL662814.1(67005)	Z82209.1(161693),AL662814.1(66946)	./.	./.	chrX:127556405	chrX:127556464	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15848),IL2RB(282)	./.	./.	chr22:37125511	chr22:37125561	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
H3C10	LINC02663(164937),LINC02670(15725)	+/.	./.	chr6:27810927	chr10:10042997	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BCL11B(22954),AL132819.1(29648)	BCL11B(23004),AL132819.1(29598)	./.	./.	chr14:99295151	chr14:99295201	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FAT1(23088),AC108865.1(141159)	FAM83B	./.	+/.	chr4:186749810	chr6:54859664	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000168143.9	.	.	upstream	downstream	mismatches(1)	.	.	.
C16orf95	FAM83B	-/-	+/-	chr16:87317154	chr6:54859664	CDS	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000260456.7	ENSG00000168143.9	.	.	upstream	downstream	mismatches(1)	.	.	.
C16orf95	RUFY4(18119),CXCR2(16589)	-/-	./-	chr16:87317152	chr2:218108700	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	duplicates(1)	.	.	.
ADNP-AS1	GPRIN1(8931),SNCB(995)	+/+	./+	chr20:50931009	chr5:176619087	exon	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000259456.4	.	.	.	downstream	upstream	mismatches(1)	.	.	.
.	.	./.	./.	GL000220.1:160360	KI270733.1:133246	intergenic	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ADNP-AS1	RUFY4(18119),CXCR2(16589)	+/+	./-	chr20:50931008	chr2:218108700	exon	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000259456.4	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RUFY4(18119),CXCR2(16589)	AP001046.1(3701),SIK1(44216)	./.	./.	chr2:218108700	chr21:43370267	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	ERN1	+/.	-/.	chr2:32916556	chr17:64088544	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000178607.17	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MROH1	+/.	+/.	chr2:32916556	chr8:144258875	intron	CDS	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000179832.17	.	.	downstream	upstream	mismatches	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077783	chrX:11077792	intron	intron	duplication/ITD	0	0	0	28	24	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
MYO5B	MYO5B	-/.	-/.	chr18:50122589	chr18:50122685	intron	intron	duplication/ITD	0	0	0	0	23	low	.	.	.	.	.	ENSG00000167306.20	ENSG00000167306.20	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	WDR97(7729),HGH1(11717)	+/.	./.	chr2:32916556	chr8:144126057	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	AC018706.1(22210),AC010719.1(94538)	+/.	./.	chr2:32916556	chr7:25854119	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	MEGF9	+/.	-/.	chr2:32916556	chr9:120714252	intron	CDS	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000106780.9	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	BX890604.1	+/.	-/.	chr2:32916556	chrX:3919756	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000285756.2	.	.	downstream	downstream	mismatches	.	.	.
RFX3	RFX3	-/.	-/.	chr9:3232766	chr9:3232801	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000080298.15	ENSG00000080298.15	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC022872.1	AC022872.1	+/.	+/.	chr15:71981642	chr15:71981655	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000261632.1	ENSG00000261632.1	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
MYO9A	AC022872.1	-/.	+/.	chr15:71981642	chr15:71981655	intron	intron	duplication/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000066933.16	ENSG00000261632.1	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
MYO9A	MYO9A	-/.	-/.	chr15:71981642	chr15:71981655	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000066933.16	ENSG00000066933.16	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469903	chr7:26469944	intron	intron	duplication/ITD	0	0	0	48	48	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469899	chr7:26469916	intron	intron	duplication/ITD	0	0	0	42	9	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469901	chr7:26469942	intron	intron	duplication/ITD	0	0	0	48	48	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
INTS5(480),C11orf98(9035),LBHD1(9035)	INTS5(489),C11orf98(9026),LBHD1(9026)	./.	./.	chr11:62653782	chr11:62653791	intergenic	intergenic	duplication/ITD	0	0	0	105	93	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC078909.2(1311),Metazoa_SRP(105322)	AC078909.2(1365),Metazoa_SRP(105268)	./.	./.	chr15:37111295	chr15:37111349	intergenic	intergenic	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
PGAM4P2(38320),KRT18P21(117568)	AC078909.2(1350),Metazoa_SRP(105283)	./.	./.	chr4:115803139	chr15:37111334	intergenic	intergenic	translocation	0	0	0	18	28	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DAAM1(45879),GPR135(11738)	AC078909.2(1350),Metazoa_SRP(105283)	./.	./.	chr14:59417284	chr15:37111334	intergenic	intergenic	translocation	0	0	0	20	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683500	chr15:81683513	intron	intron	duplication/ITD	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683500	chr15:81683513	intron	intron	duplication/5'-5'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02330	MAP2K5	-/-	+/-	chr14:87635507	chr15:67732973	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258770.1	ENSG00000137764.20	.	.	upstream	downstream	mismatches(1)	.	.	.
CLIP2	MAP2K5	+/+	+/-	chr7:74338512	chr15:67732973	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000106665.16	ENSG00000137764.20	.	.	downstream	downstream	mismatches(1)	.	.	.
AC124861.2(17618),AC124861.1(15534)	TPTE2P1(13485),RPL34P27(6605)	./.	./.	chr2:240212026	chr13:24981972	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC124861.2(17618),AC124861.1(15534)	ZNF780A	./.	-/.	chr2:240212026	chr19:40090463	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000197782.14	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484560	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262484	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262486	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
CEP20(14464),RPL15P20(28608)	CEP20(14507),RPL15P20(28565)	./.	./.	chr16:15903089	chr16:15903132	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262490	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
ZSWIM6	Y_RNA(32923),AC044873.1(218501)	+/.	./.	chr5:61455814	chr18:78577111	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130449.6	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262478	intergenic	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
NR5A1	.	-/-	./+	chr9:124507406	KI270733.1:169271	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NR5A1	.	-/-	./+	chr9:124507406	KI270733.1:124185	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NR5A1	FP671120.4	-/-	+/+	chr9:124507406	chr21:8207900	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
VPS41(14371),POU6F2(31144)	MIATNB(65497),LINC01422(12244)	./.	./.	chr7:38946765	chr22:26846390	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NR5A1	FP671120.3(1960),FP671120.7(2483)	-/-	./+	chr9:124507406	chr21:8252109	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(137579),GPC1(8641)	AL157778.1(423241),TEX101P1(341695)	./.	./.	chr2:240427022	chrX:99315302	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00911	AL162151.3(74440),AL162151.1(80431)	+/.	./.	chr14:85404901	chr14:99077985	intron	intergenic	deletion	0	0	0	1	0	low	.	.	.	.	.	ENSG00000259107.2	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916414	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143100	chr11:82143109	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
PKNOX2	PKNOX2	+/+	+/+	chr11:125411475	chr11:125411466	exon	exon	duplication/ITD	0	0	0	5	11	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|Homeobox_KN_domain(100%)	.	.	ENSG00000165495.16	ENSG00000165495.16	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
LINC02346	LINC02346	+/.	+/.	chr15:26000043	chr15:26000107	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000206187.4	ENSG00000206187.4	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC004825.1(21664),AC004825.2(25564)	AC004825.1(21727),AC004825.2(25501)	./.	./.	chr14:70881093	chr14:70881156	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886342	chr10:44886353	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(10),merge_adjacent	.	.	.
AC135726.1(9988),AC006236.1(16245)	AC135726.1(10041),AC006236.1(16192)	./.	./.	chr17:5714044	chr17:5714097	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83134541	chr16:83134589	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132189013	chr7:132189022	intron	intron	duplication/ITD	0	0	0	211	211	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32297999	chr7:32298014	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785671	chr2:101785758	intron	intron	duplication/ITD	0	0	0	703	765	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PAXBP1(82),C21orf62-AS1(226)	PAXBP1(91),C21orf62-AS1(217)	./.	./.	chr21:32771874	chr21:32771883	intergenic	intergenic	duplication/ITD	0	0	0	760	721	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785671	chr2:101785760	intron	intron	duplication/ITD	0	0	0	703	765	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00907(7808),RIT2(43997)	LINC00907(7873),RIT2(43932)	./.	./.	chr18:42699230	chr18:42699295	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
SPANXD(94015),MAGEC3(45562)	SPANXD(94079),MAGEC3(45498)	./.	./.	chrX:141792754	chrX:141792818	intergenic	intergenic	duplication/ITD	0	0	0	62	62	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674397	chr7:35674464	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	low_entropy(2)	.	.	.
SHISA9	SHISA9	+/.	+/.	chr16:12943334	chr16:12943345	intron	intron	duplication/ITD	0	0	0	54	51	low	.	.	.	.	.	ENSG00000237515.9	ENSG00000237515.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNU1-154P(711),AC239860.2(27394)	RNU1-154P(769),AC239860.2(27336)	./.	./.	chr1:145432404	chr1:145432462	intergenic	intergenic	duplication/ITD	0	0	0	188	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNU1-154P(711),AC239860.2(27394)	RNU1-154P(770),AC239860.2(27335)	./.	./.	chr1:145432404	chr1:145432463	intergenic	intergenic	duplication/ITD	0	0	0	188	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	chr8:88881403	chr8:88881466	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000253553.7	ENSG00000253553.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640170	chr2:198640183	intron	intron	duplication/ITD	0	0	0	68	65	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
INTS6P1(32857),GCSHP1(134206)	INTS6P1(32921),GCSHP1(134142)	./.	./.	chr5:39754370	chr5:39754434	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
EXOC6B	EXOC6B	-/.	-/.	chr2:72631456	chr2:72631522	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000144036.16	ENSG00000144036.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
MTHFD1L	MTHFD1L	+/.	+/.	chr6:151069242	chr6:151069294	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000120254.16	ENSG00000120254.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916571	chr21:8259013	intron	intergenic	translocation	0	0	0	1588	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
PXDN	PXDN	-/.	-/.	chr2:1658028	chr2:1658088	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000130508.11	ENSG00000130508.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RN7SKP146(5116),CLUL1(5022)	RN7SKP146(5183),CLUL1(4955)	./.	./.	chr18:591966	chr18:592033	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864100	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261486	chr1:162261495	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674874	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22747),NRXN3(87348)	./.	./.	chr14:78082946	chr14:78083025	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046150	chr12:105046194	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046150	chr12:105046194	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC016694.1(51883),RBMY2WP(38109)	AC016694.1(51928),RBMY2WP(38064)	./.	./.	chrY:22724742	chrY:22724787	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
GRAMD1B	GRAMD1B	+/+	+/+	chr11:123625952	chr11:123625939	3'UTR	3'UTR	duplication/ITD	0	0	0	7	7	low	.	.	GRAM_domain(100%),VAD1_Analog_of_StAR-related_lipid_transfer_domain(100%)|	.	.	ENSG00000023171.18	ENSG00000023171.18	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
MEIG1	MEIG1	+/.	+/.	chr10:14965676	chr10:14965716	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197889.10	ENSG00000197889.10	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FP236383.3(3790),FP236383.11(3738)	FP236383.3(3848),FP236383.11(3680)	./.	./.	chr21:8458582	chr21:8458640	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8414020	chr21:8414078	intron	intron	duplication/ITD	0	0	0	27	24	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC02885(2303),ISX(60971)	LINC02885(2324),ISX(60950)	./.	./.	chr22:35005165	chr22:35005186	intergenic	intergenic	duplication/ITD	0	0	0	43	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
LINC01791	LINC01791	+/.	+/.	chr19:31183173	chr19:31183246	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000267777.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01791	TSHZ3	+/.	-/.	chr19:31183173	chr19:31183246	intron	intron	duplication/3'-3'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000121297.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
TSHZ3	LINC01791	-/.	+/.	chr19:31183173	chr19:31183246	intron	intron	duplication/5'-5'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000267777.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
RFLNA	RFLNA	+/.	+/.	chr12:124288958	chr12:124288997	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000178882.15	ENSG00000178882.15	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
IL1RAPL2	IL1RAPL2	+/.	+/.	chrX:104786920	chrX:104786935	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000189108.13	ENSG00000189108.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640168	chr2:198640207	intron	intron	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC115286.1(205732),AC099565.1(157133)	CYP2A7	./.	-/.	chr1:34483024	chr19:40880798	intergenic	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	.	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
GEMIN8(106762),UBE2E4P(107727)	GEMIN8(106789),UBE2E4P(107700)	./.	./.	chrX:14136655	chrX:14136682	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LGSN	.	-/.	./.	chr6:63308024	KI270733.1:145956	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000146166.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TMEM182	.	+/.	./.	chr2:102840113	KI270733.1:145500	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000170417.16	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TMEM182	.	+/.	./.	chr2:102840113	GL000220.1:127652	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000170417.16	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LGSN	FP236383.3(1402),FP236383.11(6126)	-/.	./.	chr6:63308024	chr21:8456194	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146166.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM182	.	+/.	./.	chr2:102840113	KI270733.1:145956	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000170417.16	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LGSN	FP671120.4(1408),FP671120.10(6300)	-/.	./.	chr6:63308024	chr21:8229054	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146166.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	AP003071.2(80433),MYEOV(42154)	+/.	./.	chr2:32916501	chr11:69251997	intron	intergenic	translocation	0	0	0	1644	3	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	AP003071.2(80433),MYEOV(42154)	+/.	./.	chr2:32916551	chr11:69251997	intron	intergenic	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	NRG4(66),TMEM266(97)	+/.	./.	chr2:32916551	chr15:76059861	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
KRT18P55	LINC00486	-/-	+/-	chr17:28307132	chr2:32916501	exon	intron	translocation/5'-5'	0	0	0	0	1644	low	.	.	.	.	.	ENSG00000265480.5	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3507),ELMOD1(681)	./.	./.	chr11:107590331	chr11:107590410	intergenic	intergenic	duplication/ITD	0	0	0	683	685	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481630	chr17:39481710	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785667	chr2:101785760	intron	intron	duplication/ITD	0	0	0	703	765	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC117522.1(114766),AC010486.1(67188)	LINC02620	./.	-/.	chr5:85352840	chr10:104479901	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
MITF	.	+/.	./.	chr3:69888749	GL000220.1:127652	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000187098.17	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MITF	FP671120.4(1408),FP671120.10(6300)	+/.	./.	chr3:69888749	chr21:8229054	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000187098.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DAPK1	FP236383.3	+/.	+/.	chr9:87564614	chr21:8399951	intron	intron	translocation	0	0	0	9	729	low	.	.	.	.	.	ENSG00000196730.13	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11817285	chr21:8399951	intron	intron	translocation/3'-3'	0	0	0	5	729	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
DAPK1	TTLL1	+/.	-/.	chr9:87564614	chr22:43079835	intron	intron	translocation/5'-5'	0	0	0	9	3	low	.	.	.	.	.	ENSG00000196730.13	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	TTLL1	-/.	-/.	chr5:11816881	chr22:43079835	intron	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	TTLL1	-/.	-/.	chr5:11817411	chr22:43079836	intron	intron	translocation	0	0	0	9	3	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000100271.17	.	.	downstream	upstream	homopolymer(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11816716	chr21:8399951	intron	intron	translocation/3'-3'	0	0	0	5	729	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
ASAP1	TTLL1	-/.	-/.	chr8:130071004	chr22:43079834	intron	intron	translocation	0	0	0	16	3	low	.	.	.	.	.	ENSG00000153317.15	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060765.2(672),AC105031.1(16813)	TTLL1	./.	-/.	chr8:82962598	chr22:43079835	intergenic	intron	translocation	0	0	0	6	3	low	.	.	.	.	.	.	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
DYM	TTLL1	-/.	-/.	chr18:49060769	chr22:43079835	intron	intron	translocation	0	0	0	6	3	low	.	.	.	.	.	ENSG00000141627.14	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11817285	GL000220.1:160360	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11817321	GL000220.1:160360	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11816716	GL000220.1:160360	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11817411	GL000220.1:160361	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11817411	chr21:8399952	intron	intron	translocation/3'-3'	0	0	0	9	729	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	chr1:191185396	chr21:8258619	intergenic	intergenic	translocation	0	0	0	0	77	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DYM	.	-/.	./.	chr18:49060769	GL000220.1:160360	intron	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	ENSG00000141627.14	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11816754	GL000220.1:116388	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11817321	GL000220.1:116388	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11816881	GL000220.1:116388	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11816716	GL000220.1:116388	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11817285	chr21:8444186	intron	intron	translocation/3'-3'	0	0	0	5	765	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11817321	chr21:8444186	intron	intron	translocation/3'-3'	0	0	0	5	765	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96178),RORB-AS1(4795)	./.	./.	chr9:74480733	chr9:74480756	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11816881	chr21:8444186	intron	intron	translocation/3'-3'	0	0	0	5	765	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11817411	chr21:8444187	intron	intron	translocation/3'-3'	0	0	0	9	765	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC060765.2(672),AC105031.1(16813)	FP236383.3	./.	+/.	chr8:82962598	chr21:8444186	intergenic	intron	translocation	0	0	0	6	765	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
CDRT15P12(16078),RBPJP2(365212)	CDRT15P12(16093),RBPJP2(365197)	./.	./.	chr9:66270542	chr9:66270557	intergenic	intergenic	duplication/ITD	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916561	GL000220.1:116703	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481694	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PCYT1B	MVB12B	-/-	+/-	chrX:24647267	chr9:126479745	5'UTR	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000102230.14	ENSG00000196814.15	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFB9P3(84563),LINC01608(5539)	NKILA(41152),AL162291.1(141462)	./.	./.	chr8:110894457	chr20:57753932	intergenic	intergenic	translocation	0	0	0	3	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL12P4(19716),LINC01440(314042)	NKILA(41152),AL162291.1(141462)	./.	./.	chr20:55094856	chr20:57753932	intergenic	intergenic	inversion	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
VCAM1(126107),EXTL2(7220)	VCAM1(126180),EXTL2(7147)	./.	./.	chr1:100865152	chr1:100865225	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP002371.1(8127),AP003072.4(53697)	NKILA(41152),AL162291.1(141462)	./.	./.	chr11:93080158	chr20:57753932	intergenic	intergenic	translocation	0	0	0	3	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916547	chr21:8397818	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
FIBIN(9775),BBOX1(33863)	NKILA(41152),AL162291.1(141462)	./.	./.	chr11:27006862	chr20:57753932	intergenic	intergenic	translocation	0	0	0	3	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022748.2	NKILA(41152),AL162291.1(141462)	+/.	./.	chr15:78672957	chr20:57753932	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000261303.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	NKILA(41151),AL162291.1(141463)	./.	./.	chr1:146273933	chr20:57753931	intergenic	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DDX1	KLRB1	+/.	-/.	chr2:15619027	chr12:9594772	intron	3'UTR	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000079785.16	ENSG00000111796.4	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	NKILA(41151),AL162291.1(141463)	./.	./.	chr1:148724716	chr20:57753931	intergenic	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HDAC5	KLRB1	-/-	-/-	chr17:44078031	chr12:9594772	3'UTR	3'UTR	translocation	0	0	0	0	6	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	ENSG00000111796.4	.	.	upstream	downstream	mismatches(1)	.	.	.
GTF2IRD1P1	NKILA(41152),AL162291.1(141462)	-/.	./.	chr7:66824572	chr20:57753932	intron	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	ENSG00000230583.7	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025366.1(57830),AP005357.1(76639)	NKILA(41152),AL162291.1(141462)	./.	./.	chr8:110690224	chr20:57753932	intergenic	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NOTCH2(12177),RNU6-465P(14018)	NKILA(41151),AL162291.1(141463)	./.	./.	chr1:120112956	chr20:57753931	intergenic	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC096644.3(28000),AC096644.2(16483)	LINC02620	./.	-/.	chr1:220432033	chr10:104479902	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC01841	-/.	-/.	chr10:104479907	chr19:14351972	intron	intron	translocation/3'-3'	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000266913.1	.	.	downstream	downstream	mismatches(1)	.	.	.
EDIL3-DT	LINC02620	+/.	-/.	chr5:84385025	chr10:104479908	intron	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	ENSG00000250320.6	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
FTH1P5(333498),AL158050.2(138528)	LINC02620	./.	-/.	chr6:51246754	chr10:104479907	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
ANKIB1	RASSF2	+/.	-/.	chr7:92347615	chr20:4792791	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000001629.10	ENSG00000101265.16	.	.	downstream	downstream	mismatches(1)	.	.	.
NAALADL2	NAALADL2	+/.	+/.	chr3:175463698	chr3:175463736	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000177694.16	ENSG00000177694.16	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797741	chr17:57797750	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
LIPG	LIPG	+/+	+/+	chr18:49575486	chr18:49575473	CDS	CDS	duplication/ITD	0	0	0	1	0	low	.	.	Lipase(63%)|Lipase(38%),PLAT/LH2_domain(100%)	.	.	ENSG00000101670.12	ENSG00000101670.12	.	.	downstream	upstream	small_insert_size	.	.	.
AC069503.1	AC069503.1	-/.	-/.	chr12:122009006	chr12:122009019	intron	intron	duplication/ITD	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255856.2	ENSG00000255856.2	.	.	upstream	downstream	small_insert_size	.	.	.
DIPK1C	ZMYM3	-/.	-/.	chr18:74457183	chrX:71254014	CDS	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000187773.9	ENSG00000147130.14	.	.	downstream	downstream	mismatches(1)	.	.	.
MTR	COPZ1	+/+	+/+	chr1:236893463	chr12:54304542	exon	intron	translocation	0	0	0	4	0	low	.	.	B12_binding_domain(100%),Homocysteine_S-methyltransferase(100%),Pterin_binding_enzyme(100%),Vitamin_B12_dependent_methionine_synthase__activation_domain(36%)|Clathrin_adaptor_complex_small_chain(100%)	.	.	ENSG00000116984.15	ENSG00000111481.10	.	.	downstream	upstream	mismatches(1)	.	.	.
RAB11FIP5(18991),NOTO(26862)	SLC39A12(66893),CACNB2(30239)	./.	./.	chr2:73175712	chr10:18110185	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RAB11FIP5(18991),NOTO(26862)	AL117329.1	./.	+/.	chr2:73175712	chr22:47854445	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000224271.7	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664203	chr19:30664262	intron	intron	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3(3792),FP236383.11(3736)	FP236383.3(3848),FP236383.11(3680)	./.	./.	chr21:8458584	chr21:8458640	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NXF2(27648),NXF2B(6026)	NXF2(27659),NXF2B(6015)	./.	./.	chrX:102354370	chrX:102354381	intergenic	intergenic	duplication/ITD	0	0	0	0	54	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02305(19158),AL356807.1(52241)	LINC02305(19167),AL356807.1(52232)	./.	./.	chr14:83934535	chr14:83934544	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331419	chr19:55331432	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
GIT2	PMFBP1(2095),AC009075.1(45592)	-/.	./.	chr12:109995699	chr16:72178973	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139436.21	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01121(52122),SRBD1(13161)	U3(158665),RNU6-27P(45812)	./.	./.	chr2:45375519	chr20:17141698	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FSTL4	AXIN2	-/.	-/.	chr5:133448694	chr17:65557693	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053108.17	ENSG00000168646.13	.	.	upstream	upstream	mismatches(1)	.	.	.
PRDM14	U3(158665),RNU6-27P(45812)	-/.	./.	chr8:70067597	chr20:17141698	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000147596.4	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGA2	TCF7L2	+/+	+/+	chr12:65824769	chr10:113117408	5'UTR	intron	translocation	0	0	0	144	254	low	.	.	|HMG_(high_mobility_group)_box(100%),N-terminal_CTNNB1_binding(24%)	.	.	ENSG00000149948.14	ENSG00000148737.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392800	chr1:90392891	intron	intron	duplication/ITD	0	0	0	326	334	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	same_gene	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398695	chr7:54398704	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
YWHAQ	KMT2C	-/-	-/-	chr2:9630456	chr7:152323855	5'UTR	intron	translocation	0	0	0	4	0	low	.	.	|F/Y-rich_N-terminus(100%),F/Y_rich_C-terminus(100%),PHD-finger(100%),PHD-like_zinc-binding_domain(100%),PHD-zinc-finger_like_domain(100%),SET_domain(100%)	.	.	ENSG00000134308.14	ENSG00000055609.20	.	.	upstream	downstream	mismatches(1)	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670928	chr2:23670937	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670928	chr2:23670937	intron	intron	duplication/5'-5'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
ITPRIPL2(28348),AC099518.5(28348),SYT17(17994)	CLUH	./.	-/.	chr16:19149977	chr17:2707324	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000132361.18	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF536	SLC6A14	+/.	+/.	chr19:30664263	chrX:116445508	intron	intron	translocation/5'-5'	0	0	0	35	687	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU7-188P(267),SEM1(103439)	SLC6A14	./.	+/.	chr7:96378187	chrX:116445508	intergenic	intron	translocation	0	0	0	1	687	low	.	.	.	.	.	.	ENSG00000268104.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916603	chr10:127190668	intron	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
AF121898.1	AF121898.1	-/.	-/.	chr8:87586911	chr8:87586928	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000253500.6	ENSG00000253500.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AF121898.1	CNBD1	-/.	+/.	chr8:87586911	chr8:87586928	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000253500.6	ENSG00000176571.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565357	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CNBD1	AF121898.1	+/.	-/.	chr8:87586911	chr8:87586928	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000176571.12	ENSG00000253500.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
CNBD1	CNBD1	+/.	+/.	chr8:87586911	chr8:87586928	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000176571.12	ENSG00000176571.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC005524.1(58635),MAN1A2P1(4400)	AC005524.1(58656),MAN1A2P1(4379)	./.	./.	chr19:28786412	chr19:28786433	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470845	chr10:3470858	intron	intron	duplication/ITD	0	0	0	23	0	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785773	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM86LP(4830),AC079804.3(8192)	FAM86LP(4901),AC079804.3(8121)	./.	./.	chr7:6944433	chr7:6944504	intergenic	intergenic	duplication/ITD	0	0	0	3	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
COMMD10	SLC6A14	+/.	+/.	chr5:116327607	chrX:116445508	intron	intron	translocation/5'-5'	0	0	0	0	687	low	.	.	.	.	.	ENSG00000145781.9	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
CNBD1	SLC6A14	+/.	+/.	chr8:87586926	chrX:116445508	intron	intron	translocation	0	0	0	1	687	low	.	.	.	.	.	ENSG00000176571.12	ENSG00000268104.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00665	SLC6A14	-/.	+/.	chr19:36277245	chrX:116445508	intron	intron	translocation	0	0	0	0	687	low	.	.	.	.	.	ENSG00000232677.9	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638079	chr7:116638088	intron	intron	duplication/ITD	0	0	0	119	117	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683470	chr15:81683479	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683470	chr15:81683479	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683470	chr15:81683479	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683470	chr15:81683479	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396486	chr8:22396584	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916462	KI270733.1:131106	intron	intergenic	translocation	0	0	0	914	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
AC097375.5	HULC	+/.	+/.	chr4:152039316	chr6:8891039	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286720.1	ENSG00000285219.2	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481693	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261464	chr1:162261483	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
FOXD4L4(27367),IGKV1OR-3(4804)	FOXD4L4(27419),IGKV1OR-3(4752)	./.	./.	chr9:65766151	chr9:65766203	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886348	chr10:44886357	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
WDR62(1882),OVOL3(4161)	FP236383.3	./.	+/.	chr19:36106990	chr21:8442304	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	EFNB1(4569),PJA1(314122)	+/.	./.	chr21:8215040	chrX:68846729	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000278996.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC114477.1(10760),RANP7(81328)	FP671120.4	./.	+/.	chr3:22822807	chr21:8215041	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
EFNB1(4569),PJA1(314122)	.	./.	./.	chrX:68846729	GL000220.1:158478	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC114477.1(10760),RANP7(81328)	.	./.	./.	chr3:22822807	GL000220.1:158479	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269664	chr14:77269727	intron	intron	duplication/ITD	0	0	0	11	20	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
WDR62(1882),OVOL3(4161)	.	./.	./.	chr19:36106990	GL000220.1:158478	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
EFNB1(4569),PJA1(314122)	.	./.	./.	chrX:68846729	GL000220.1:114506	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
WDR62(1882),OVOL3(4161)	FP671120.4	./.	+/.	chr19:36106990	chr21:8215040	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
ELF2P4(68174),FSIP2-AS1(36382)	ELF2P4(68202),FSIP2-AS1(36354)	./.	./.	chr2:185615992	chr2:185616020	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC114477.1(10760),RANP7(81328)	.	./.	./.	chr3:22822807	KI270733.1:176442	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC019131.1	.	+/.	./.	chr4:98936686	GL000220.1:114506	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263923.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
EFNB1(4569),PJA1(314122)	.	./.	./.	chrX:68846729	KI270733.1:131362	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC114477.1(10760),RANP7(81328)	FP236383.3	./.	+/.	chr3:22822807	chr21:8398075	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
CLN8	KCNQ3	+/.	-/.	chr8:1799265	chr8:132364665	intron	intron	inversion	0	0	0	0	1	low	.	.	.	.	.	ENSG00000182372.10	ENSG00000184156.17	.	.	upstream	upstream	mismatches(1)	.	.	.
NR5A1	FP236383.3	-/-	+/+	chr9:124507406	chr21:8435134	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC019131.1	FP671120.4	+/.	+/.	chr4:98936686	chr21:8215040	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000263923.1	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481689	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331418	chr19:55331431	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312077	chr11:22312092	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916546	chr21:8397818	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469922	chr7:26469931	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL136456.1	CHMP4C	+/.	+/.	chr1:193977263	chr8:81746206	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227240.2	ENSG00000164695.5	.	.	upstream	upstream	mismatches(1)	.	.	.
RNA5SP484(32659),RNU2-52P(137317)	RNA5SP484(32670),RNU2-52P(137306)	./.	./.	chr20:40886888	chr20:40886899	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL136456.1	AC008798.2	+/.	-/.	chr1:193977263	chr19:29841679	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227240.2	ENSG00000286538.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AL136456.1	HRAT92(7318),PRKAR1B(16641)	+/.	./.	chr1:193977263	chr7:532556	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000227240.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331417	chr19:55331432	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL136456.1	GNAI2P2(106298),AL731555.1(1092)	+/.	./.	chr1:193977263	chr10:78175836	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000227240.2	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661559	chrX:133661634	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785670	chr2:101785767	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NOL9	TGFBI	-/.	+/.	chr1:6537653	chr5:136032777	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000162408.11	ENSG00000120708.17	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TGFBI	CDH13	+/.	+/.	chr5:136032777	chr16:83248612	intron	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000120708.17	ENSG00000140945.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATG7	TGFBI	+/.	+/.	chr3:11333137	chr5:136032777	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000197548.12	ENSG00000120708.17	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC4A4	SLC4A4	+/.	+/.	chr4:71311898	chr4:71311907	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000080493.18	ENSG00000080493.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC092905.1(5028),H3P12(6780)	AC092905.1(5037),H3P12(6771)	./.	./.	chr3:109402898	chr3:109402907	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
BMPER	BMPER	+/.	+/.	chr7:34065218	chr7:34065227	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000164619.10	ENSG00000164619.10	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
GTF3C3(740),C2orf66(3952)	DOT1L	./.	+/.	chr2:196800465	chr19:2209231	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000104885.18	.	.	downstream	upstream	mismatches(1)	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520832	chr7:30520929	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DOT1L	LSM7	+/.	-/.	chr19:2209231	chr19:2328610	intron	5'UTR	duplication/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000104885.18	ENSG00000130332.15	.	.	upstream	downstream	mismatches(1)	.	.	.
GTF3C3(740),C2orf66(3952)	AC027369.3	./.	-/.	chr2:196800465	chr11:48893563	intergenic	intron	translocation	0	0	0	1	23	low	.	.	.	.	.	.	ENSG00000254728.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC027369.3	LSM7	-/.	-/.	chr11:48893563	chr19:2328610	intron	5'UTR	translocation	0	0	0	23	1	low	.	.	.	.	.	ENSG00000254728.1	ENSG00000130332.15	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257419	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CHORDC1P3(22410),SMIM31(4948)	AC027369.3	./.	-/.	chr4:164749116	chr11:48893563	intergenic	intron	translocation	0	0	0	3	23	low	.	.	.	.	.	.	ENSG00000254728.1	.	.	upstream	upstream	mismatches(1)	.	.	.
GTF3C3(740),C2orf66(3952)	AC027369.3	./.	-/.	chr2:196800465	chr11:48886865	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000254728.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AC027369.3	LSM7	-/.	-/.	chr11:48886865	chr19:2328610	intron	5'UTR	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000254728.1	ENSG00000130332.15	.	.	downstream	downstream	mismatches(1)	.	.	.
CHORDC1P3(22410),SMIM31(4948)	AC027369.3	./.	-/.	chr4:164749116	chr11:48886865	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000254728.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	KIFBP(28489),SRGN(16070)	+/.	./.	chr2:32916556	chr10:69072033	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8400241	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457994	chr6:100458071	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2175),FP236383.3(121535)	+/.	./.	chr2:32916556	chr21:8259108	intron	intergenic	translocation	0	0	0	1606	52	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442143	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214879	intron	intron	translocation	0	0	0	1606	63	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158317	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114345	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670928	chr2:23670937	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176280	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131201	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
TRAPPC9	LINC02400(17855),AC090630.1(37372)	-/.	./.	chr8:140089241	chr12:41792526	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000167632.18	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RABGAP1L	DHRS9	+/.	+/.	chr1:174866099	chr2:169079986	intron	intron	translocation	0	0	0	9	35	low	.	.	.	.	.	ENSG00000152061.23	ENSG00000073737.17	.	.	upstream	downstream	low_entropy	.	.	.
DHRS9	LDB2(148),AC106894.1(74449)	+/.	./.	chr2:169079986	chr4:16898826	intron	intergenic	translocation	0	0	0	35	99	low	.	.	.	.	.	ENSG00000073737.17	.	.	.	downstream	upstream	low_entropy	.	.	.
DHRS9	DHRS9	+/.	+/.	chr2:169079909	chr2:169079986	intron	intron	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000073737.17	ENSG00000073737.17	.	.	upstream	downstream	same_gene	.	.	.
DHRS9	LINC02742	+/.	+/.	chr2:169079986	chr11:29053269	intron	intron	translocation	0	0	0	35	3	low	.	.	.	.	.	ENSG00000073737.17	ENSG00000249867.6	.	.	downstream	upstream	mismatches	.	.	.
LDB2(223),AC106894.1(74374)	MRPS18CP7(82624),RNA5SP505(121)	./.	./.	chr4:16898901	chrX:53908933	intergenic	intergenic	translocation	0	0	0	83	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AC108452.1(93379),AC100781.1(569417)	AC108452.1(93440),AC100781.1(569356)	./.	./.	chr18:38085792	chr18:38085853	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LDB2(148),AC106894.1(74449)	LDB2(223),AC106894.1(74374)	./.	./.	chr4:16898826	chr4:16898901	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
RABGAP1L	DHRS9	+/.	+/.	chr1:174866099	chr2:169079984	intron	intron	translocation	0	0	0	9	35	low	.	.	.	.	.	ENSG00000152061.23	ENSG00000073737.17	.	.	upstream	downstream	low_entropy	.	.	.
DHRS9	LDB2(148),AC106894.1(74449)	+/.	./.	chr2:169079984	chr4:16898826	intron	intergenic	translocation	0	0	0	35	99	low	.	.	.	.	.	ENSG00000073737.17	.	.	.	downstream	upstream	low_entropy	.	.	.
DHRS9	DHRS9	+/.	+/.	chr2:169079909	chr2:169079984	intron	intron	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000073737.17	ENSG00000073737.17	.	.	upstream	downstream	same_gene	.	.	.
DHRS9	MRPS18CP7(82624),RNA5SP505(121)	+/.	./.	chr2:169079986	chrX:53908933	intron	intergenic	translocation	0	0	0	35	3	low	.	.	.	.	.	ENSG00000073737.17	.	.	.	downstream	upstream	mismatches	.	.	.
WDR62(1882),OVOL3(4161)	.	./.	./.	chr19:36106990	KI270733.1:131362	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581674	chr5:93581683	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LDB2(155),AC106894.1(74442)	LDB2(220),AC106894.1(74377)	./.	./.	chr4:16898833	chr4:16898898	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396503	chr8:22396599	intron	intron	duplication/ITD	0	0	0	306	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661574	chrX:133661583	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RGS12	FP236383.3	+/+	+/+	chr4:3386018	chr21:8442056	exon	intron	translocation	0	0	0	0	2539	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02885(2320),ISX(60954)	LINC02885(2329),ISX(60945)	./.	./.	chr22:35005182	chr22:35005191	intergenic	intergenic	duplication/ITD	0	0	0	43	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520831	chr7:30520922	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280002	chr1:148280097	intron	intron	duplication/ITD	0	0	0	133	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880795	chr19:40880859	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNU6-551P(110281),PAPSS1(44775)	.	./.	./.	chr4:107545501	GL000220.1:160777	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670920	chr2:23670931	intron	intron	duplication/5'-5'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	duplicates(1)	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670920	chr2:23670931	intron	intron	duplication/3'-3'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	duplicates(1)	.	.	.
GEMIN8(106769),UBE2E4P(107720)	GEMIN8(106836),UBE2E4P(107653)	./.	./.	chrX:14136662	chrX:14136729	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060809.1	.	+/.	./.	chr15:81565292	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC023034.1	GPC3	+/.	-/.	chr15:81565292	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
CNIH2	AL353600.2(8787),LINC02628(179209)	+/+	./-	chr11:66278295	chr10:33399722	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000174871.11	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916404	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
PKNOX2	AC023034.1	+/+	+/+	chr11:125411520	chr15:81565298	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259594.6	.	.	downstream	upstream	mismatches	.	.	.
SLC39A14	GPC3	+/.	-/.	chr8:22396531	chrX:133661569	intron	intron	translocation	0	0	0	308	195	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000147257.15	.	.	upstream	upstream	low_entropy	.	.	.
PKNOX2	AC023034.1	+/+	+/+	chr11:125411520	chr15:81565296	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259594.6	.	.	downstream	upstream	mismatches	.	.	.
COMETT	GPC3	-/.	-/.	chr7:116638129	chrX:133661569	intron	intron	translocation	0	0	0	119	195	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000147257.15	.	.	downstream	upstream	low_entropy	.	.	.
AC060809.1	GPC3	+/.	-/.	chr15:81683520	chrX:133661569	intron	intron	translocation/5'-5'	0	0	0	149	195	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000147257.15	.	.	downstream	upstream	low_entropy	.	.	.
SLC39A14	AC060809.1	+/.	+/.	chr8:22396531	chr15:81565298	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
AC023034.1	.	+/.	./.	chr15:81565298	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AL513321.1(21925),AL592466.1(602)	NKILA(41152),AL162291.1(141462)	./.	./.	chr10:65270717	chr20:57753932	intergenic	intergenic	translocation	0	0	0	3	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	GPC3	+/.	-/.	chr15:81565298	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565298	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565298	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
LINC00486	SIDT1	+/.	+/.	chr2:32916556	chr3:113580787	intron	intron	translocation	0	0	0	1606	5	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000072858.11	.	.	downstream	upstream	mismatches	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565298	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565298	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
SLC39A14	AC023034.1	+/.	+/.	chr8:22396531	chr15:81565296	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
SLC39A14	AC060809.1	+/.	+/.	chr8:22396531	chr15:81565296	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
PKNOX2	AC060809.1	+/+	+/+	chr11:125411520	chr15:81565294	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259543.1	.	.	downstream	upstream	mismatches	.	.	.
AC023034.1	.	+/.	./.	chr15:81565296	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
DYM	FP236383.3	-/.	+/.	chr18:49060769	chr21:8399951	intron	intron	translocation/3'-3'	0	0	0	6	729	low	.	.	.	.	.	ENSG00000141627.14	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	.	+/.	./.	chr15:81565296	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC023034.1	GPC3	+/.	-/.	chr15:81565296	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
AC060809.1	GPC3	+/.	-/.	chr15:81565296	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565347	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
COMETT	AC023034.1	-/.	+/.	chr7:116638129	chr15:81565296	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259594.6	.	.	downstream	upstream	low_entropy	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565296	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565296	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
SLC39A14	AC023034.1	+/.	+/.	chr8:22396531	chr15:81565294	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
SLC39A14	AC060809.1	+/.	+/.	chr8:22396531	chr15:81565294	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
AC023034.1	.	+/.	./.	chr15:81565294	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC060809.1	.	+/.	./.	chr15:81565294	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC060809.1	GPC3	+/.	-/.	chr15:81565294	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
COMETT	AC060809.1	-/.	+/.	chr7:116638129	chr15:81565294	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259543.1	.	.	downstream	upstream	low_entropy	.	.	.
SLC39A14	AC023034.1	+/.	+/.	chr8:22396531	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
SLC39A14	AC060809.1	+/.	+/.	chr8:22396531	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
PKNOX2	AC023034.1	+/+	+/+	chr11:125411520	chr15:81565292	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259594.6	.	.	downstream	upstream	mismatches	.	.	.
PKNOX2	AC060809.1	+/+	+/+	chr11:125411520	chr15:81565292	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259543.1	.	.	downstream	upstream	mismatches	.	.	.
AC092723.3(36712),AC092723.2(3016)	AC092723.3(36763),AC092723.2(2965)	./.	./.	chr16:86032611	chr16:86032662	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670912	chr2:23670980	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670912	chr2:23670980	intron	intron	duplication/5'-5'	0	0	0	25	25	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670912	chr2:23670980	intron	intron	duplication/3'-3'	0	0	0	25	25	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670912	chr2:23670980	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(2)	.	.	.
SMPX	SMPX	-/.	-/.	chrX:21728214	chrX:21728227	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000091482.8	ENSG00000091482.8	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
MTRNR2L12	5_8S_rRNA(1695),FP236383.3(122015)	-/.	./.	chr3:96618115	chr21:8258628	5'UTR	intergenic	translocation	0	0	0	11	10	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNNA2	CTNNA2	+/.	+/.	chr2:79384376	chr2:79384391	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000066032.19	ENSG00000066032.19	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
OTX2P1(77424),PCSK5(88645)	OTX2P1(77480),PCSK5(88589)	./.	./.	chr9:75801999	chr9:75802055	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626666	chrX:18626675	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257427	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396500	chr8:22396598	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
UTRN	SVIL(151863),AL353093.1(2210)	+/.	./.	chr6:144648111	chr10:29888822	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683456	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683456	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683458	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683456	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
IPO9-AS1	NAV1	-/.	+/.	chr1:201702674	chr1:201702687	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000134369.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	chr1:201702674	chr1:201702687	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000231871.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
NAV1	NAV1	+/.	+/.	chr1:201702674	chr1:201702687	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000134369.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GRB2	ADGRG2	-/.	-/.	chr17:75347755	chrX:19087138	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000177885.15	ENSG00000173698.18	.	.	downstream	downstream	mismatches(1)	.	.	.
GEMIN8(106769),UBE2E4P(107720)	GEMIN8(106834),UBE2E4P(107655)	./.	./.	chrX:14136662	chrX:14136727	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL590814.1(17619),AL133457.1(190066)	AL590814.1(17634),AL133457.1(190051)	./.	./.	chr6:92197775	chr6:92197790	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
AL590814.1(17619),AL133457.1(190066)	AL590814.1(17655),AL133457.1(190030)	./.	./.	chr6:92197775	chr6:92197811	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
TIMP3	TIMP3	+/.	+/.	chr22:32814143	chr22:32814156	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000100234.12	ENSG00000100234.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SYN3	TIMP3	-/.	+/.	chr22:32814143	chr22:32814156	intron	intron	duplication/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000185666.15	ENSG00000100234.12	.	.	upstream	downstream	duplicates(1)	.	.	.
SYN3	SYN3	-/.	-/.	chr22:32814143	chr22:32814156	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000185666.15	ENSG00000185666.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8444335	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
TIMP3	TIMP3	+/.	+/.	chr22:32814147	chr22:32814156	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000100234.12	ENSG00000100234.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SYN3	TIMP3	-/.	+/.	chr22:32814147	chr22:32814156	intron	intron	duplication/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000185666.15	ENSG00000100234.12	.	.	upstream	downstream	duplicates(1)	.	.	.
TIMP3	SYN3	+/.	-/.	chr22:32814142	chr22:32814155	intron	intron	duplication/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000100234.12	ENSG00000185666.15	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
SYN3	SYN3	-/.	-/.	chr22:32814142	chr22:32814155	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000185666.15	ENSG00000185666.15	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
RNA5SP50(16367),AL591463.1(21380)	RNA5SP50(16398),AL591463.1(21349)	./.	./.	chr1:73765990	chr1:73766021	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PPP4R2(20588),RNU6-557P(2362)	PPP4R2(20603),RNU6-557P(2347)	./.	./.	chr3:73089786	chr3:73089801	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NELL1	NELL1	+/.	+/.	chr11:21342706	chr11:21342715	intron	intron	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	ENSG00000165973.19	ENSG00000165973.19	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC079906.1(69708),AMIGO2(33844)	AC079906.1(69723),AMIGO2(33829)	./.	./.	chr12:47041863	chr12:47041878	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
UBASH3B	LINC01721	+/.	+/.	chr11:122700146	chr20:24086885	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154127.10	ENSG00000230133.2	.	.	upstream	downstream	mismatches(1)	.	.	.
AL355375.2(272540),AL450346.1(309205)	SBNO2	./.	-/.	chr6:62883867	chr19:1136542	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000064932.16	.	.	upstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626682	chrX:18626691	intron	intron	duplication/ITD	0	0	0	84	83	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143104	chr11:82143113	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3499),ELMOD1(689)	./.	./.	chr11:107590331	chr11:107590402	intergenic	intergenic	duplication/ITD	0	0	0	683	685	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(212),AC106894.1(74385)	./.	./.	chr4:16898832	chr4:16898890	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
RBM34	AC002463.1	-/.	+/.	chr1:235138608	chr7:112789954	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000188739.15	ENSG00000223646.2	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6-393P(9032),TMEM130(42632)	NEURL1	./.	+/.	chr7:98803856	chr10:103584649	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107954.10	.	.	downstream	upstream	mismatches(1)	.	.	.
ADGRL2	AC109462.1	+/.	-/.	chr1:81458429	chr16:55265406	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000117114.20	ENSG00000259283.2	.	.	downstream	downstream	mismatches(1)	.	.	.
LSAMP	LSAMP	-/.	-/.	chr3:116642644	chr3:116642659	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000185565.12	ENSG00000185565.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5449),ZNF669(8446)	./.	./.	chr1:247091449	chr1:247091516	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046150	chr12:105046194	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
AC092681.1	AC092681.1	-/.	-/.	chr7:149907473	chr7:149907514	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000224016.2	ENSG00000224016.2	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC092681.1	AC092681.1	-/.	-/.	chr7:149907473	chr7:149907512	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000224016.2	ENSG00000224016.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC025470.2	.	+/.	./.	chr5:57533339	GL000220.1:158230	exon	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	ENSG00000250961.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TSPY17P(152507),SRIP3(45526)	TSPY17P(152520),SRIP3(45513)	./.	./.	chrY:6673436	chrY:6673449	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SELENOK(87724),AC115282.2(54302)	SELENOK(87765),AC115282.2(54261)	./.	./.	chr3:53979686	chr3:53979727	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
VGLL4	COP1P1(12203),RN7SL50P(45324)	-/.	./.	chr3:11638895	chr18:8426507	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144560.15	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AMPH	AMPH	-/.	-/.	chr7:38406724	chr7:38406777	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000078053.17	ENSG00000078053.17	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
SPANXN4(33400),RN7SKP81(22245)	SPANXN4(33409),RN7SKP81(22236)	./.	./.	chrX:143068102	chrX:143068111	intergenic	intergenic	duplication/ITD	0	0	0	68	67	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
VCAM1(126107),EXTL2(7220)	VCAM1(126178),EXTL2(7149)	./.	./.	chr1:100865152	chr1:100865223	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SPANXN4(33393),RN7SKP81(22252)	SPANXN4(33402),RN7SKP81(22243)	./.	./.	chrX:143068095	chrX:143068104	intergenic	intergenic	duplication/ITD	0	0	0	68	67	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092350	chr11:88092446	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	small_insert_size	.	.	.
TMCO5B	SLC4A4	-/-	+/-	chr15:33236830	chr4:71466979	exon	intron	translocation/5'-5'	0	0	0	88	3	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000080493.18	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC4A4	SLC4A4	+/.	+/.	chr4:71466926	chr4:71466979	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000080493.18	ENSG00000080493.18	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SLC4A4	SLC4A4	+/.	+/.	chr4:71311898	chr4:71466979	intron	intron	duplication	0	0	0	2	3	low	.	.	.	.	.	ENSG00000080493.18	ENSG00000080493.18	.	.	upstream	downstream	mismatches(1)	.	.	.
GHR(6370),AC113368.1(890)	GHR(6383),AC113368.1(877)	./.	./.	chr5:42728248	chr5:42728261	intergenic	intergenic	duplication/ITD	0	0	0	19	17	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
GHR(6378),AC113368.1(882)	GHR(6387),AC113368.1(873)	./.	./.	chr5:42728256	chr5:42728265	intergenic	intergenic	duplication/ITD	0	0	0	19	17	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581688	chr5:93581697	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(206),AC106894.1(74391)	./.	./.	chr4:16898832	chr4:16898884	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
CEBPE	LINC00486	-/-	+/-	chr14:23117710	chr2:32916555	CDS	intron	translocation/5'-5'	0	0	0	43	1606	low	.	.	Basic_region_leucine_zipper(8%)|	.	.	ENSG00000092067.6	ENSG00000230876.8	.	.	upstream	downstream	low_entropy	.	.	.
AC019131.1	FP236383.3	+/.	+/.	chr4:98936686	chr21:8398074	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000263923.1	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	AC091804.1(65658),ALCAM(797985)	+/.	./.	chr2:32916556	chr3:104568924	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
PAXBP1(77),C21orf62-AS1(231)	PAXBP1(86),C21orf62-AS1(222)	./.	./.	chr21:32771869	chr21:32771878	intergenic	intergenic	duplication/ITD	0	0	0	760	276	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
ESR1	ESR1	+/.	+/.	chr6:151669140	chr6:151669185	intron	intron	duplication/ITD	0	0	0	126	126	low	.	.	.	.	.	ENSG00000091831.24	ENSG00000091831.24	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
BPIFB1	BPIFB1	+/.	+/.	chr20:33279871	chr20:33279912	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000125999.11	ENSG00000125999.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
AGMO	AGMO	-/.	-/.	chr7:15449323	chr7:15449361	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000187546.14	ENSG00000187546.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
FNDC3B	FNDC3B	+/.	+/.	chr3:172358955	chr3:172359014	intron	intron	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	ENSG00000075420.13	ENSG00000075420.13	.	.	upstream	downstream	small_insert_size	.	.	.
PAXBP1(102),C21orf62-AS1(206)	PAXBP1(111),C21orf62-AS1(197)	./.	./.	chr21:32771894	chr21:32771903	intergenic	intergenic	duplication/ITD	0	0	0	774	760	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAST3	TSHZ2	+/+	+/-	chr19:18147023	chr20:53302065	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	Domain_of_unknown_function_(DUF1908)(100%),PDZ_domain(100%),Protein_kinase_domain(100%)|	.	.	ENSG00000099308.10	ENSG00000182463.16	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM132B(44060),AC005252.2(102231)	TMEM132B(44120),AC005252.2(102171)	./.	./.	chr12:125706437	chr12:125706497	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TMEM132B(44060),AC005252.2(102231)	TMEM132B(44122),AC005252.2(102169)	./.	./.	chr12:125706437	chr12:125706499	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
PLA2G7	LARP4	-/.	+/.	chr6:46734491	chr12:50446367	intron	intron	translocation	0	0	0	49	70	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000161813.22	.	.	downstream	downstream	mismatches(1)	.	.	.
RUFY4(18121),CXCR2(16587)	.	./.	./.	chr2:218108702	GL000220.1:158237	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
RUFY4(18121),CXCR2(16587)	.	./.	./.	chr2:218108702	KI270733.1:176200	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
RUFY4(18121),CXCR2(16587)	5_8S_rRNA(2095),FP236383.3(121615)	./.	./.	chr2:218108702	chr21:8259028	intergenic	intergenic	translocation	0	0	0	125	35	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
RUFY4(18121),CXCR2(16587)	FP236383.3	./.	+/.	chr2:218108702	chr21:8442063	intergenic	intron	translocation	0	0	0	125	35	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1)	.	.	.
RUFY4(18121),CXCR2(16587)	FP671120.4	./.	+/.	chr2:218108702	chr21:8214799	intergenic	intron	translocation	0	0	0	125	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	duplicates(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	chr10:80511711	chr10:80511726	intron	intron	duplication/ITD	0	0	0	39	39	low	.	.	.	.	.	ENSG00000108219.15	ENSG00000108219.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RPL12P43(20704),AL391358.1(110894)	RPL12P43(20719),AL391358.1(110879)	./.	./.	chrX:118167265	chrX:118167280	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481704	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491185	chr11:105491194	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797745	chr17:57797754	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275782	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC090578.1	AC090578.1	+/.	+/.	chr8:88881403	chr8:88881463	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000253553.7	ENSG00000253553.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77481),PCSK5(88588)	./.	./.	chr7:39505425	chr9:75802056	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77479),PCSK5(88590)	./.	./.	chr7:39505425	chr9:75802054	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77477),PCSK5(88592)	./.	./.	chr7:39505425	chr9:75802052	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU7-51P(667049),RNU6ATAC28P(34695)	RNU7-51P(667058),RNU6ATAC28P(34686)	./.	./.	chr14:83715689	chr14:83715698	intergenic	intergenic	duplication/ITD	0	0	0	31	29	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL137071.1	GLIS3	+/.	-/.	chr9:3876635	chr9:3876650	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000236724.1	ENSG00000107249.23	.	.	upstream	downstream	low_entropy(1)	.	.	.
GLIS3	GLIS3	-/.	-/.	chr9:3876635	chr9:3876650	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000107249.23	ENSG00000107249.23	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC148477.9(9437),AC148476.1(51719)	AC148477.9(9534),AC148476.1(51622)	./.	./.	chr12:132372785	chr12:132372882	intergenic	intergenic	duplication/ITD	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
PRKG1	PRKG1	+/.	+/.	chr10:51334134	chr10:51334192	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000185532.20	ENSG00000185532.20	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
NRXN1	NRXN1	-/.	-/.	chr2:50177782	chr2:50177791	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000179915.24	ENSG00000179915.24	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	LINC00440	./.	+/.	chr3:31295858	chr13:89245912	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000234660.2	.	.	downstream	upstream	mismatches(1)	.	.	.
FOSL1(1788),C11orf68(14449)	FOSL1(1801),C11orf68(14436)	./.	./.	chr11:65902361	chr11:65902374	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC095353.1(25607),AC110995.1(217560)	AC095353.1(25622),AC110995.1(217545)	./.	./.	chrX:5435858	chrX:5435873	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	LDHAL6CP(5035),RSL24D1P5(43338)	+/.	./.	chr2:32916556	chr12:63011937	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
RN7SL700P(234245),SUCLA2(52257)	RN7SL700P(234292),SUCLA2(52210)	./.	./.	chr13:47693479	chr13:47693526	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TSHZ3	LINC01791	-/.	+/.	chr19:31183179	chr19:31183242	intron	intron	duplication/5'-5'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000267777.2	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC01591(134882),AC040914.1(21264)	LINC01591(134931),AC040914.1(21215)	./.	./.	chr8:135434601	chr8:135434650	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702315	chr11:3702330	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	LINC00939	+/.	-/.	chr2:32916556	chr12:125979684	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000249267.7	.	.	downstream	downstream	mismatches	.	.	.
NECTIN4(8115),KLHDC9(688)	NECTIN4(8177),KLHDC9(626)	./.	./.	chr1:161097673	chr1:161097735	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC087667.1(67443),AC084116.2(77208)	AC087667.1(67458),AC084116.2(77193)	./.	./.	chr8:126396981	chr8:126396996	intergenic	intergenic	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
IGSF1	.	-/.	./.	chrX:131338235	KI270733.1:178744	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000147255.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RUFY4(18120),CXCR2(16588)	DIP2A(27616),S100B(973)	./.	./.	chr2:218108701	chr21:46597631	intergenic	intergenic	translocation	0	0	0	125	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C16orf95	BICC1	-/-	+/-	chr16:87317152	chr10:58688001	CDS	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000260456.7	ENSG00000122870.12	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	RPL12P4(19716),LINC01440(314042)	./.	./.	chr2:240393940	chr20:55094856	intergenic	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IL22(13048),MDM1(5791)	IL22(13061),MDM1(5778)	./.	./.	chr12:68266652	chr12:68266665	intergenic	intergenic	duplication/ITD	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
BICC1	DIP2A(27616),S100B(973)	+/.	./.	chr10:58688001	chr21:46597631	intron	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000122870.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22759),NRXN3(87336)	./.	./.	chr14:78082946	chr14:78083037	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL137071.1	AL137071.1	+/.	+/.	chr9:3876635	chr9:3876650	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000236724.1	ENSG00000236724.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470845	chr10:3470943	intron	intron	duplication/ITD	0	0	0	23	19	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880790	chr19:40880855	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SFN(3796),GPN2(7880)	SFN(3807),GPN2(7869)	./.	./.	chr1:26868252	chr1:26868263	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
OXGR1(137592),LINC00456(36429)	OXGR1(137601),LINC00456(36420)	./.	./.	chr13:97132322	chr13:97132331	intergenic	intergenic	duplication/ITD	0	0	0	12	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670924	chr2:23670933	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EYA1	EYA1	-/.	-/.	chr8:71463577	chr8:71463588	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000104313.20	ENSG00000104313.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
UBE2FP2(4831),AC138305.1(128362)	UBE2FP2(4909),AC138305.1(128284)	./.	./.	chr16:63185902	chr16:63185980	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC026700.1(28686),AC010595.1(84594)	AC026700.1(28699),AC010595.1(84581)	./.	./.	chr5:85578638	chr5:85578651	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
P4HB	AKR1C8P(1423),AKR1C4(8852)	-/-	./-	chr17:81846579	chr10:5186610	CDS	intergenic	translocation	0	0	0	3	0	low	.	.	Thioredoxin(62%),Thioredoxin-like_domain(83%)|	.	.	ENSG00000185624.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
OXGR1(137590),LINC00456(36431)	OXGR1(137601),LINC00456(36420)	./.	./.	chr13:97132320	chr13:97132331	intergenic	intergenic	duplication/ITD	0	0	0	12	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683500	chr15:81683513	intron	intron	duplication	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
P4HB	AC122136.1(34098),AC093382.1(34692)	-/-	./-	chr17:81846579	chr2:215904616	CDS	intergenic	translocation	0	0	0	3	0	low	.	.	Thioredoxin(62%),Thioredoxin-like_domain(83%)|	.	.	ENSG00000185624.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GRB7	.	+/.	./.	chr17:39745629	GL000220.1:158222	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000141738.14	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
GRB7	.	+/.	./.	chr17:39745629	GL000220.1:114250	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000141738.14	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
GRB7	.	+/.	./.	chr17:39745629	KI270733.1:131106	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000141738.14	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
GRB7	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr17:39745629	chr21:8259013	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000141738.14	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GRB7	FP236383.3	+/.	+/.	chr17:39745629	chr21:8442048	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000141738.14	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GRB7	FP236383.3	+/.	+/.	chr17:39745629	chr21:8397818	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000141738.14	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGEF3	ARHGEF3	-/.	-/.	chr3:56995614	chr3:56995671	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000163947.12	ENSG00000163947.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
U95743.1(127345),ERCC4(13049)	.	./.	./.	chr16:13907105	GL000220.1:115102	intergenic	intergenic	translocation	0	0	0	10	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
U95743.1(127345),ERCC4(13049)	5_8S_rRNA(2933),FP236383.3(120777)	./.	./.	chr16:13907105	chr21:8259866	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC096644.3(28000),AC096644.2(16483)	LINC02620	./.	-/.	chr1:220432033	chr10:104479908	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
U95743.1(127345),ERCC4(13049)	FP236383.3	./.	+/.	chr16:13907105	chr21:8398671	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
SYNE2	KDM6A	+/.	+/.	chr14:64217933	chrX:45003866	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000054654.19	ENSG00000147050.16	.	.	downstream	upstream	mismatches(1)	.	.	.
AL357513.1(53851),TBC1D32(180168)	SLC28A3	./.	-/.	chr6:120899326	chr9:84292498	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000197506.8	.	.	downstream	upstream	mismatches(1)	.	.	.
AC068759.1	AL357513.1(53851),TBC1D32(180168)	+/.	./.	chr3:173217193	chr6:120899326	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000237473.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HMGB3P23(633005),RNA5SP281(15393)	HMGB3P23(633016),RNA5SP281(15382)	./.	./.	chr9:32278165	chr9:32278176	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC00486	MNX1	+/.	-/.	chr2:32916556	chr7:156999991	intron	intron	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000130675.15	.	.	downstream	downstream	mismatches	.	.	.
ARHGAP18	AC009806.1(63108),AC107881.1(15251)	-/.	./.	chr6:129666567	chr11:12604075	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000146376.11	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FAT2	ARHGAP18	-/.	-/.	chr5:151559602	chr6:129666569	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000086570.12	ENSG00000146376.11	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGAP18	SLC28A3	-/.	-/.	chr6:129666568	chr9:84292498	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000146376.11	ENSG00000197506.8	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGAP18	TPT1P4(24300),AL024474.1(31769)	-/.	./.	chr6:129666568	chr6:144225265	intron	intergenic	inversion	0	0	0	0	2	low	.	.	.	.	.	ENSG00000146376.11	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ARHGAP18	SEMA3E	-/.	-/.	chr6:129666567	chr7:83537019	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000146376.11	ENSG00000170381.14	.	.	downstream	upstream	mismatches(1)	.	.	.
EDIL3-DT	MRPS21P6(45455),RPS27P18(261294)	+/.	./.	chr5:84383953	chr10:125212392	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250320.6	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGAP18	TCF7L2	-/.	+/.	chr6:129666567	chr10:113117447	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146376.11	ENSG00000148737.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC068759.1	ARHGAP18	+/.	-/.	chr3:173217193	chr6:129666568	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000237473.2	ENSG00000146376.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AL136301.1(1364),RNY4P30(94963)	KDM6A	./.	+/.	chr13:49794671	chrX:45003866	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000147050.16	.	.	upstream	upstream	mismatches(1)	.	.	.
MTHFD1L	MTHFD1L	+/.	+/.	chr6:151069242	chr6:151069285	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000120254.16	ENSG00000120254.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL049833.4(25225),AL049833.2(77567)	AL049833.4(25238),AL049833.2(77554)	./.	./.	chr14:97032849	chr14:97032862	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
TYRO3(16298),AC016134.1(9570)	TYRO3(16350),AC016134.1(9518)	./.	./.	chr15:41599887	chr15:41599939	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916546	chr21:8442048	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396547	chr8:22396558	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FXNP1(22675),NRXN3(87420)	FXNP1(22702),NRXN3(87393)	./.	./.	chr14:78082953	chr14:78082980	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
FO393413.1(58399),RNU7-65P(12607)	FO393413.1(58412),RNU7-65P(12594)	./.	./.	chr6:49332193	chr6:49332206	intergenic	intergenic	duplication/ITD	0	0	0	13	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	AC011298.2(202),KIF1A(11874)	+/.	./.	chr2:32916556	chr2:240701887	intron	intergenic	deletion	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
PNPLA4	PNPLA4	-/-	-/-	chrX:7899619	chrX:7899680	3'UTR	3'UTR	duplication/ITD	0	0	0	5	5	low	.	.	Patatin-like_phospholipase(100%)|	.	.	ENSG00000006757.12	ENSG00000006757.12	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
HOXC6	HOXC6	+/.	+/.	chr12:54008827	chr12:54008842	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000197757.8	ENSG00000197757.8	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
MAGI1	NCALD	-/.	-/.	chr3:65590818	chr8:102120953	intron	intron	translocation/5'-5'	1	0	0	1	0	low	.	.	.	.	.	ENSG00000151276.23	ENSG00000104490.18	.	.	upstream	upstream	min_support	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565361	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785671	chr2:101785762	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NDUFB9P2(22401),CAPZA1P4(115963)	NDUFB9P2(22416),CAPZA1P4(115948)	./.	./.	chr7:131776653	chr7:131776668	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
ACTR2(30858),SPRED2(8740)	ACTR2(30867),SPRED2(8731)	./.	./.	chr2:65302111	chr2:65302120	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DCHS2	DCHS2	-/.	-/.	chr4:154463691	chr4:154463747	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000197410.14	ENSG00000197410.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC020741.1	LSM14B	-/-	+/+	chr4:61428174	chr20:62131771	exon	intron	translocation	0	0	0	0	0	low	.	.	|FDF_domain(19%)	.	.	ENSG00000205682.2	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143112	chr11:82143121	intron	intron	duplication/ITD	0	0	0	748	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398686	chr7:54398701	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SNAP91	SNAP91	-/.	-/.	chr6:83556322	chr6:83556385	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000065609.14	ENSG00000065609.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	PPP6C	+/.	-/.	chr2:32916556	chr9:125167849	intron	intron	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000119414.12	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	LINC02136	+/.	-/.	chr2:32916556	chr16:71425219	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000261348.2	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	AL035653.1(206),PPP1R3G(4189)	+/.	./.	chr2:32916556	chr6:5081152	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
U95743.1(127345),ERCC4(13049)	AD000090.1	./.	+/.	chr16:13907105	chr19:35575797	intergenic	exon	translocation	0	0	0	10	2	low	.	.	.	.	.	.	ENSG00000283907.1	.	.	downstream	upstream	mismatches(1)	.	.	.
ST13P19(18745),AL035414.1(17698)	LINC00486	./.	+/.	chr1:210285986	chr2:32916556	intergenic	intron	translocation	0	0	0	1	1606	low	.	.	.	.	.	.	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	VWA8	+/.	-/.	chr2:32916556	chr13:41881393	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000102763.18	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	AC022433.1(177876),RNA5SP182(43764)	+/.	./.	chr2:32916556	chr5:51842924	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	XRCC6P5(165341),B3GNT2P1(241)	+/.	./.	chr2:32916556	chrX:99886499	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481630	chr17:39481704	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MET	MET	+/.	+/.	chr7:116716273	chr7:116716338	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000105976.16	ENSG00000105976.16	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
SFN(3793),GPN2(7883)	SFN(3806),GPN2(7870)	./.	./.	chr1:26868249	chr1:26868262	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117366	chr10:113117375	intron	intron	duplication/ITD	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
TAB2(11972),ZC3H12D(23210)	TAB2(11983),ZC3H12D(23199)	./.	./.	chr6:149423585	chr6:149423596	intergenic	intergenic	duplication/ITD	0	0	0	295	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
AL357513.1(53851),TBC1D32(180168)	TPT1P4(24300),AL024474.1(31769)	./.	./.	chr6:120899326	chr6:144225265	intergenic	intergenic	inversion	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	NAV1	-/.	+/.	chr1:201702673	chr1:201702684	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000134369.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
NAV1	NAV1	+/.	+/.	chr1:201702673	chr1:201702684	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000134369.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TGM3(8186),TGM6(31636)	TGM3(8199),TGM6(31623)	./.	./.	chr20:2349265	chr20:2349278	intergenic	intergenic	duplication/ITD	0	0	0	15	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SIM1	AC011751.1(48071),SURF6P1(500216)	-/.	./.	chr6:100458071	chrY:16692610	intron	intergenic	translocation	0	0	0	69	0	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	LRRC36	+/.	+/.	chr10:104396370	chr16:67331080	intron	intron	translocation	0	0	0	217	0	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000159708.18	.	.	upstream	downstream	mismatches(1)	.	.	.
SIM1	DMBT1	-/.	+/.	chr6:100458071	chr10:122634466	intron	intron	translocation/3'-3'	0	0	0	69	0	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000187908.20	.	.	downstream	upstream	mismatches(1)	.	.	.
SIM1	RUNX1	-/.	-/.	chr6:100458071	chr21:35360180	intron	intron	translocation	0	0	0	69	0	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000159216.19	.	.	downstream	upstream	mismatches(1)	.	.	.
AC063977.5	AC063977.5	-/.	-/.	chr19:51178469	chr19:51178533	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000269072.1	ENSG00000269072.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SIM1	MSR1(4055),AC011586.2(27213)	-/.	./.	chr6:100458071	chr8:16571545	intron	intergenic	translocation	0	0	0	69	0	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
VCAM1(126139),EXTL2(7188)	CFAP58	./.	+/.	chr1:100865184	chr10:104396370	intergenic	intron	translocation	0	0	0	6	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
IFT122	LINC01432(143327),AL035258.1(2573)	+/.	./.	chr3:129500615	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000163913.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
EXOC4	CFAP58	+/.	+/.	chr7:133777290	chr10:104396370	intron	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	ENSG00000131558.15	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	LINC02565(107139),RNU6-737P(6269)	+/.	./.	chr10:104396370	chr18:57278333	intron	intergenic	translocation	0	0	0	217	5	low	.	.	.	.	.	ENSG00000120051.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	CARD16	+/.	-/.	chr10:104396370	chr11:105077862	intron	intron	translocation/3'-3'	0	0	0	217	13	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000204397.9	.	.	upstream	downstream	mismatches(1)	.	.	.
SIM1	FRY	-/.	+/.	chr6:100458071	chr13:31867346	intron	intron	translocation	0	0	0	69	2	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000073910.23	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003066.1	AP003066.1	+/.	+/.	chr11:96914327	chr11:96914338	intron	intron	duplication/ITD	0	0	0	14	0	low	.	.	.	.	.	ENSG00000254587.2	ENSG00000254587.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	LINC01791	+/.	+/.	chr10:104396370	chr19:31183217	intron	intron	translocation/3'-3'	0	0	0	217	10	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000267777.2	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	TSHZ3	+/.	-/.	chr10:104396370	chr19:31183217	intron	intron	translocation	0	0	0	217	10	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000121297.8	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	PKP2(85817),ASS1P14(3244)	+/.	./.	chr10:104396370	chr12:32982594	intron	intergenic	translocation	0	0	0	217	0	low	.	.	.	.	.	ENSG00000120051.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	.	./.	./.	chr1:191185396	KI270733.1:130712	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SIM1	PKP2(85822),ASS1P14(3239)	-/.	./.	chr6:100458071	chr12:32982599	intron	intergenic	translocation	0	0	0	69	0	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RBM46(180916),AC097467.3(163987)	RBM46(180976),AC097467.3(163927)	./.	./.	chr4:155009729	chr4:155009789	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL353649.1(24705),OR7E31P(32688)	CFAP58	./.	+/.	chr9:90183351	chr10:104396370	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	upstream	upstream	mismatches(1)	.	.	.
SIM1	AL353649.1(24700),OR7E31P(32693)	-/.	./.	chr6:100458071	chr9:90183346	intron	intergenic	translocation	0	0	0	69	0	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AC011751.1(48066),SURF6P1(500221)	+/.	./.	chr10:104396370	chrY:16692605	intron	intergenic	translocation	0	0	0	217	0	low	.	.	.	.	.	ENSG00000120051.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NPM1P47(5452),C2CD4B(74778)	NPM1P47(5467),C2CD4B(74763)	./.	./.	chr15:62088757	chr15:62088772	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC108734.3	TMEM154	-/.	-/.	chr3:180816272	chr4:152661292	intron	intron	translocation	0	0	0	23	99	low	.	.	.	.	.	ENSG00000285336.1	ENSG00000170006.12	.	.	downstream	upstream	low_entropy	.	.	.
TMEM154	CDH13	-/.	+/.	chr4:152661292	chr16:83134535	intron	intron	translocation	0	0	0	99	57	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000140945.17	.	.	upstream	upstream	low_entropy	.	.	.
TMEM154	ZFR	-/.	-/.	chr4:152661292	chr5:32370305	intron	intron	translocation/5'-5'	0	0	0	99	6	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000056097.16	.	.	upstream	upstream	low_entropy	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661292	chr4:152661348	intron	intron	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	same_gene	.	.	.
AC108734.3	CDH13	-/.	+/.	chr3:180816272	chr16:83134593	intron	intron	translocation	0	0	0	23	57	low	.	.	.	.	.	ENSG00000285336.1	ENSG00000140945.17	.	.	downstream	downstream	low_entropy	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83134535	chr16:83134593	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	same_gene	.	.	.
ZFR	CDH13	-/.	+/.	chr5:32370305	chr16:83134593	intron	intron	translocation/5'-5'	0	0	0	6	57	low	.	.	.	.	.	ENSG00000056097.16	ENSG00000140945.17	.	.	upstream	downstream	low_entropy	.	.	.
TMEM154	CDH13	-/.	+/.	chr4:152661348	chr16:83134593	intron	intron	translocation	0	0	0	99	57	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000140945.17	.	.	downstream	downstream	low_entropy	.	.	.
AC108734.3	TMEM154	-/.	-/.	chr3:180816272	chr4:152661286	intron	intron	translocation	0	0	0	23	99	low	.	.	.	.	.	ENSG00000285336.1	ENSG00000170006.12	.	.	downstream	upstream	low_entropy	.	.	.
TMEM154	ZFR	-/.	-/.	chr4:152661294	chr5:32370305	intron	intron	translocation/5'-5'	0	0	0	99	6	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000056097.16	.	.	upstream	upstream	low_entropy	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661286	chr4:152661348	intron	intron	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	same_gene	.	.	.
TMEM154	CDH13	-/.	+/.	chr4:152661288	chr16:83134535	intron	intron	translocation	0	0	0	99	57	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000140945.17	.	.	upstream	upstream	low_entropy	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661288	chr4:152661348	intron	intron	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	same_gene	.	.	.
TMEM154	CDH13	-/.	+/.	chr4:152661290	chr16:83134535	intron	intron	translocation	0	0	0	99	57	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000140945.17	.	.	upstream	upstream	low_entropy	.	.	.
TMEM154	ZFR	-/.	-/.	chr4:152661290	chr5:32370305	intron	intron	translocation/5'-5'	0	0	0	99	6	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000056097.16	.	.	upstream	upstream	low_entropy	.	.	.
MTCO2P3(6686),SLC25A5P4(103254)	MTCO2P3(6749),SLC25A5P4(103191)	./.	./.	chr13:57211485	chr13:57211548	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NEK5	NEK5	-/.	-/.	chr13:52084710	chr13:52084723	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197168.13	ENSG00000197168.13	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:160509	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC073875.1(184939),ACTG1P22(25890)	AC073875.1(184998),ACTG1P22(25831)	./.	./.	chr2:57729538	chr2:57729597	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
DPY19L3(91142),PDCD5(4153)	DPY19L3(91195),PDCD5(4100)	./.	./.	chr19:32577037	chr19:32577090	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
Y_RNA(8910),FMNL2(41804)	Y_RNA(8925),FMNL2(41789)	./.	./.	chr2:152293370	chr2:152293385	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
C1orf94(52073),AC115286.1(5655)	C1orf94(52125),AC115286.1(5603)	./.	./.	chr1:34271204	chr1:34271256	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL356108.1	AL356108.1	-/.	-/.	chr1:222110555	chr1:222110568	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000236230.2	ENSG00000236230.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31721663	chrX:31721719	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SEMA5B(2020),PDIA5(36400)	SEMA5B(2033),PDIA5(36387)	./.	./.	chr3:123030625	chr3:123030638	intergenic	intergenic	duplication/ITD	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BMS1P21(4202),MBL1P(8120)	BMS1P21(4217),MBL1P(8105)	./.	./.	chr10:79912058	chr10:79912073	intergenic	intergenic	duplication/ITD	0	0	0	95	94	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
PHF1	LINC02882	+/.	-/.	chr6:33410647	chr12:73881443	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000112511.18	ENSG00000251138.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565343	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:116676	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916400	chr21:8444474	intron	intron	translocation	0	0	0	275	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8444474	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916400	chr21:8400239	intron	intron	translocation	0	0	0	275	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	PPIAP88(94815),RNU6-996P(24709)	+/.	./.	chr2:32916554	chr9:107638431	intron	intergenic	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	PPIAP88(94815),RNU6-996P(24709)	+/.	./.	chr2:32916556	chr9:107638431	intron	intergenic	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	GL000220.1:160648	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	GL000220.1:116676	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:116676	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143075	chr11:82143173	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916462	GL000220.1:158222	intron	intergenic	translocation	0	0	0	914	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
TLE4	PCDH8(111841),OLFM4(68331)	+/.	./.	chr9:79572887	chr13:52960482	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000106829.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC254633.1(17950),AADACL4(6891)	TLE4	./.	+/.	chr1:12637194	chr9:79572887	intergenic	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	.	ENSG00000106829.20	.	.	downstream	downstream	mismatches(1)	.	.	.
TBX2	TBX2	+/.	+/.	chr17:61402925	chr17:61402970	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000121068.14	ENSG00000121068.14	.	.	upstream	downstream	low_entropy(2)	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336118	chr7:43336199	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
TBX2	TBX2-AS1	+/.	-/.	chr17:61402925	chr17:61402970	intron	intron	duplication/3'-3'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000121068.14	ENSG00000267280.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
TBX2-AS1	TBX2	-/.	+/.	chr17:61402925	chr17:61402970	intron	intron	duplication/5'-5'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000267280.5	ENSG00000121068.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
TBX2-AS1	TBX2-AS1	-/.	-/.	chr17:61402925	chr17:61402970	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000267280.5	ENSG00000267280.5	.	.	upstream	downstream	low_entropy(2)	.	.	.
SFN(3785),GPN2(7891)	SFN(3856),GPN2(7820)	./.	./.	chr1:26868241	chr1:26868312	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916403	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
CACNA1A	CACNA1A	-/.	-/.	chr19:13336582	chr19:13336591	intron	intron	duplication/ITD	0	0	0	14	4	low	.	.	.	.	.	ENSG00000141837.22	ENSG00000141837.22	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
EMCN	EMCN	-/.	-/.	chr4:100459176	chr4:100459185	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000164035.10	ENSG00000164035.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143078	chr11:82143169	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479811	chr10:104479908	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916407	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479811	chr10:104479906	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143162	chr11:82143171	intron	intron	duplication/ITD	0	0	0	5	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(4)	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670924	chr2:23670933	intron	intron	duplication/5'-5'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM200A	SMIM26(7743),DTD1(10636)	+/.	./.	chr6:130429090	chr20:18577306	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164484.12	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNA1B	SMIM26(7743),DTD1(10636)	+/.	./.	chr9:138016811	chr20:18577306	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000148408.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025039.1(485228),MIR3924(223220)	ARID3A	./.	+/.	chr10:57081259	chr19:934948	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000116017.11	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	SUSD5(52300),FBXL2(5915)	./.	./.	chr2:240393940	chr3:33271110	intergenic	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM120C	ARID3A	-/-	+/+	chrX:54085815	chr19:934949	CDS	intron	translocation	0	0	0	0	0	low	.	.	|ARID/BRIGHT_DNA_binding_domain(100%)	.	.	ENSG00000184083.12	ENSG00000116017.11	.	.	upstream	upstream	mismatches(1)	.	.	.
PITX2(12895),LINC01438(139385)	NCOA4	./.	-/.	chr4:110655018	chr10:46024417	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000266412.6	.	.	upstream	downstream	mismatches(1)	.	.	.
MUC17(240),TRIM56(26382)	MUC17(291),TRIM56(26331)	./.	./.	chr7:101059099	chr7:101059150	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC090409.2(4620),AC090409.1(1670)	AC090409.2(4669),AC090409.1(1621)	./.	./.	chr18:61584076	chr18:61584125	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC097459.1	AC097459.1	+/.	+/.	chr4:100459176	chr4:100459185	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000286150.1	ENSG00000286150.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
Y_RNA(59412),AC026320.2(251700)	GFRA3(8),CDC25C(10640)	./.	./.	chr3:191700649	chr5:138274629	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ASAP1	ASAP1	-/.	-/.	chr8:130070985	chr8:130071047	intron	intron	duplication/ITD	0	0	0	8	2	low	.	.	.	.	.	ENSG00000153317.15	ENSG00000153317.15	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683464	chr15:81683473	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
FAM207BP(9507),GXYLT1P1(17401)	FAM207BP(9557),GXYLT1P1(17351)	./.	./.	chr13:18707014	chr13:18707064	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674872	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261498	chr1:162261507	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261488	chr1:162261497	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261494	chr1:162261503	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01320	FP236383.3	+/.	+/.	chr2:33767498	chr21:8441663	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000228262.10	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674864	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CMYA5	CMYA5	+/.	+/.	chr5:79747025	chr5:79747057	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000164309.15	ENSG00000164309.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDH12	LRRC4B	-/.	-/.	chr5:22594933	chr19:50548285	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000154162.15	ENSG00000131409.13	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL9P15(86767),AC073359.2(63130)	AL022162.1(20909),XPNPEP2(39692)	./.	./.	chr3:154763886	chrX:129699257	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02669	SLC6A14	-/.	+/.	chr10:3470880	chrX:116445508	intron	intron	translocation/5'-5'	0	0	0	23	687	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000268104.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008785.1(60464),AC126755.3(50874)	AC008785.1(60473),AC126755.3(50865)	./.	./.	chr16:18262420	chr16:18262429	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CD177	AC138305.1(25155),AC018846.1(60282)	+/+	./-	chr19:43354424	chr16:63643201	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000204936.10	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
STARD3	AL009050.1(39816),MAFB(519675)	+/.	./.	chr17:39660682	chr20:40166173	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000131748.16	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNK1	AL009050.1(39816),MAFB(519675)	+/.	./.	chr1:233614665	chr20:40166173	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000135750.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419200	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
MAPT	KDM6A	+/.	+/.	chr17:45946214	chrX:45003866	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186868.17	ENSG00000147050.16	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419206	chr14:106419121	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(9),low_entropy(2)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419206	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CD81	ITGAD	+/+	+/+	chr11:2377523	chr16:31416978	5'UTR	intron	translocation	0	0	0	8	6	low	.	.	|Integrin_alpha(34%),Integrin_alpha_cytoplasmic_region(100%)	.	.	ENSG00000110651.12	ENSG00000156886.12	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419206	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(9),low_entropy(2)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308651	chr3:19308660	intron	intron	duplication/ITD	0	0	0	238	0	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(2)	.	.	.
GEMIN8(106770),UBE2E4P(107719)	GEMIN8(106839),UBE2E4P(107650)	./.	./.	chrX:14136663	chrX:14136732	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC116359.1(16745),AC094105.1(25727)	FP236383.3(5979),FP236383.11(1549)	./.	./.	chr5:2805294	chr21:8460771	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679810	chr21:39679875	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SPANXN4(33389),RN7SKP81(22256)	SPANXN4(33453),RN7SKP81(22192)	./.	./.	chrX:143068091	chrX:143068155	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
RPL9P15(86808),AC073359.2(63089)	PCAT14(10919),AP000345.1(8348)	./.	./.	chr3:154763927	chr22:23558716	intergenic	intergenic	translocation	0	0	0	3	136	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ARPP21(35587),AC104308.1(41783)	ARPP21(35604),AC104308.1(41766)	./.	./.	chr3:35830083	chr3:35830100	intergenic	intergenic	duplication/ITD	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RDXP3(28056),DCAF8L2(42567)	RDXP3(28131),DCAF8L2(42492)	./.	./.	chrX:27547815	chrX:27547890	intergenic	intergenic	duplication/ITD	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
RDXP3(28059),DCAF8L2(42564)	RDXP3(28152),DCAF8L2(42471)	./.	./.	chrX:27547818	chrX:27547911	intergenic	intergenic	duplication/ITD	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SEPTIN9	COL18A1	+/.	+/.	chr17:77452809	chr21:45478842	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184640.20	ENSG00000182871.16	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358053.1(206647),AL591644.1(221034)	AL358053.1(206722),AL591644.1(220959)	./.	./.	chr9:1756750	chr9:1756825	intergenic	intergenic	duplication/ITD	0	0	0	40	40	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL355674.1(96148),RORB-AS1(4825)	AL355674.1(96207),RORB-AS1(4766)	./.	./.	chr9:74480726	chr9:74480785	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117418	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419204	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419208	chr14:106419121	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419208	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
RUFY4(18121),CXCR2(16587)	.	./.	./.	chr2:218108702	KI270733.1:131121	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419208	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419129	chr14:106419212	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419129	chr14:106419212	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419129	chr14:106419212	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419203	chr14:106419214	exon	exon	duplication/3'-3'	0	0	0	0	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419203	chr14:106419214	exon	exon	duplication/5'-5'	0	0	0	0	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	chr15:45462075	chr15:45462165	intron	intron	duplication/ITD	0	0	0	0	4	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479903	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MCTP1(74946),FAM81B(31845)	MCTP1(75001),FAM81B(31790)	./.	./.	chr5:95359521	chr5:95359576	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479899	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479897	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143162	chr11:82143173	intron	intron	duplication/ITD	0	0	0	5	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479895	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479891	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11816716	chr21:8444186	intron	intron	translocation/3'-3'	0	0	0	5	765	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674410	chr7:35674419	intron	intron	duplication/ITD	0	0	0	59	0	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00665	SLC6A14	-/.	+/.	chr19:36282322	chrX:116445508	intron	intron	translocation	0	0	0	1	687	low	.	.	.	.	.	ENSG00000232677.9	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
CSAG3	CSAG3	+/.	+/.	chrX:152758797	chrX:152758870	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000268916.6	ENSG00000268916.6	.	.	upstream	downstream	low_entropy(4)	.	.	.
TPT1P14(48516),RPL35AP37(90458)	CSAG3	./.	+/.	chrX:15026979	chrX:152758870	intergenic	intron	duplication	0	0	0	121	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
TPT1P14(48516),RPL35AP37(90458)	CSAG3	./.	+/.	chrX:15026979	chrX:152758868	intergenic	intron	duplication	0	0	0	121	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
TPT1P14(48516),RPL35AP37(90458)	CSAG3	./.	+/.	chrX:15026979	chrX:152758864	intergenic	intron	duplication	0	0	0	121	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336187	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336185	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HECW1	TPT1P14(48516),RPL35AP37(90458)	+/.	./.	chr7:43336185	chrX:15026979	intron	intergenic	translocation	0	0	0	38	121	low	.	.	.	.	.	ENSG00000002746.15	.	.	.	downstream	upstream	duplicates(1)	.	.	.
NGB	SLC6A14	-/.	+/.	chr14:77269784	chrX:116445508	intron	intron	translocation	0	0	0	79	687	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
HECW1	TPT1P14(48516),RPL35AP37(90458)	+/.	./.	chr7:43336183	chrX:15026979	intron	intergenic	translocation	0	0	0	38	121	low	.	.	.	.	.	ENSG00000002746.15	.	.	.	downstream	upstream	duplicates(1)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916605	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC02086	CSAG3	+/.	+/.	chr17:48677967	chrX:152758876	intron	intron	translocation	0	0	0	4	16	low	.	.	.	.	.	ENSG00000244649.5	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
LINC02086	CSAG3	+/.	+/.	chr17:48677973	chrX:152758876	intron	intron	translocation	0	0	0	4	16	low	.	.	.	.	.	ENSG00000244649.5	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
AC012085.1(15008),CRADD(20781)	CSAG3	./.	+/.	chr12:93656594	chrX:152758876	intergenic	intron	translocation	0	0	0	31	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
AC012085.1(15006),CRADD(20783)	CSAG3	./.	+/.	chr12:93656592	chrX:152758876	intergenic	intron	translocation	0	0	0	31	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
AC012085.1(15004),CRADD(20785)	CSAG3	./.	+/.	chr12:93656590	chrX:152758876	intergenic	intron	translocation	0	0	0	31	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
FAM86LP(4888),AC079804.3(8134)	SLC6A14	./.	+/.	chr7:6944491	chrX:116445508	intergenic	intron	translocation	0	0	0	3	687	low	.	.	.	.	.	.	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
HECW1	TPT1P14(48516),RPL35AP37(90458)	+/.	./.	chr7:43336179	chrX:15026979	intron	intergenic	translocation	0	0	0	38	121	low	.	.	.	.	.	ENSG00000002746.15	.	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
ZC3H10	LINC00355(330731),LGMNP1(551322)	+/+	./+	chr12:56120985	chr13:64406775	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	RNA-binding__Nab2-type_zinc_finger(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(60%)|	.	.	ENSG00000135482.7	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CNTN5(199340),RN7SL222P(83750)	TENM1(91064),AL008707.1(148924)	./.	./.	chr11:100558225	chrX:125054881	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BAIAP2L1(191),PPIAP82(52838)	KLRB1	./.	-/.	chr7:98401281	chr12:9594772	intergenic	3'UTR	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000111796.4	.	.	downstream	downstream	mismatches(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3845),GPN2(7831)	./.	./.	chr1:26868243	chr1:26868301	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441077	chr16:51441068	exon	exon	duplication/ITD	0	0	0	22	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
RBFOX3	RBFOX3	-/.	-/.	chr17:79442317	chr17:79442402	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000167281.19	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC009803.1	AC009803.1	-/.	-/.	chr12:115594101	chr12:115594116	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000257407.1	ENSG00000257407.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TCF7L2	IGH@-ext	+/.	-/.	chr10:113117381	chr14:106419215	intron	exon	translocation	0	0	0	197	86	low	.	.	.	.	.	ENSG00000148737.17	IGH.g@-ext	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025039.1(485228),MIR3924(223220)	AC120498.8(3993),CACNA1H(359)	./.	./.	chr10:57081259	chr16:1152747	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441075	chr16:51441062	exon	exon	duplication/ITD	0	0	0	22	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	duplicates(2),merge_adjacent	.	.	.
LDB2(160),AC106894.1(74437)	LDB2(224),AC106894.1(74373)	./.	./.	chr4:16898838	chr4:16898902	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441075	chr16:51441066	exon	exon	duplication/ITD	0	0	0	22	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
SLC35F1	NOS1	+/+	-/+	chr6:118314125	chr12:117265422	CDS	CDS	translocation/5'-5'	0	0	0	0	0	low	.	.	Solute_carrier_family_35(100%)|	.	.	ENSG00000196376.11	ENSG00000089250.19	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	PCED1A	+/.	-/.	chr2:32916556	chr20:2836238	intron	CDS	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000132635.17	.	.	downstream	downstream	low_entropy	.	.	.
PRR34	TOX	-/-	-/-	chr22:46051410	chr8:59038916	exon	intron	translocation	0	0	0	0	0	low	.	.	|HMG_(high_mobility_group)_box(100%)	.	.	ENSG00000182257.8	ENSG00000198846.6	.	.	upstream	downstream	mismatches(1)	.	.	.
AC090952.2(2748),AC090952.1(4003)	BMP7	./.	-/.	chr3:14644191	chr20:57176967	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101144.13	.	.	upstream	downstream	mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3838),GPN2(7838)	./.	./.	chr1:26868241	chr1:26868294	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL391832.3(62694),LINC01348(21981)	AC105180.2(10848),ZFAT(76453)	./.	./.	chr1:235043498	chr8:134401335	intergenic	intergenic	translocation	0	0	0	0	120	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KRCC1	NMU(2043),RNU6-276P(159895)	-/.	./.	chr2:88055890	chr4:55638741	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000172086.9	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	FP671120.4(933),FP671120.10(6775)	./.	./.	chr20:20367921	chr21:8228579	intergenic	intergenic	translocation	0	0	0	28	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.3	./.	+/.	chr20:20367921	chr21:8411578	intergenic	intron	translocation	0	0	0	28	1	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.3(5330),FP236383.11(2198)	./.	./.	chr20:20367921	chr21:8460122	intergenic	intergenic	translocation	0	0	0	28	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.3	./.	+/.	chr20:20367921	chr21:8415560	intergenic	intron	translocation	0	0	0	28	2	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	.	./.	./.	chr20:20367921	GL000220.1:127183	intergenic	intergenic	translocation	0	0	0	28	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
STYK1	STYK1	-/.	-/.	chr12:10630027	chr12:10630089	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000060140.9	ENSG00000060140.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446330	chr12:50446410	intron	intron	duplication/ITD	0	0	0	70	85	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797743	chr17:57797752	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL161658.1(2264),INSM1(183)	.	./.	./.	chr20:20367921	GL000220.1:131580	intergenic	intergenic	translocation	0	0	0	28	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261464	chr1:162261524	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261464	chr1:162261528	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11816754	chr21:8444186	intron	intron	translocation/3'-3'	0	0	0	5	765	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132189005	chr7:132189014	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.11(1896),FP236383.6(560)	./.	./.	chr20:20367921	chr21:8464694	intergenic	intergenic	translocation	0	0	0	28	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAM83B	AC092275.1	+/.	+/.	chr6:54859661	chr16:85260115	intron	intron	translocation	0	1	0	3	2	low	.	.	.	.	.	ENSG00000168143.9	ENSG00000287787.1	.	.	downstream	upstream	min_support	.	.	.
AC019257.1	WBP1LP4(21962),RPL23AP45(70963)	-/-	./-	chr8:1973463	chr5:181401000	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL445675.2(25676),AL603825.1(58526)	ARHGEF10	./.	+/.	chr1:242916479	chr8:1946622	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000104728.16	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139383.1	.	-/.	./.	chr13:33517098	KI270733.1:175792	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000230490.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446335	chr12:50446346	intron	intron	duplication/ITD	0	0	0	70	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC019257.1	SOAT1	-/-	+/-	chr8:1973463	chr1:179342329	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	ENSG00000057252.13	.	.	upstream	downstream	mismatches(1)	.	.	.
SOAT1	ARHGEF10	+/.	+/.	chr1:179342329	chr8:1946622	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000057252.13	ENSG00000104728.16	.	.	downstream	upstream	mismatches(1)	.	.	.
ZBTB44	AC026765.3	-/.	+/.	chr11:130314625	chr12:114698741	5'UTR	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000196323.14	ENSG00000257817.2	.	.	downstream	downstream	mismatches(1)	.	.	.
PLEKHF2(30434),C8orf37-AS1(17337)	PPP1R1AP2(177279),ANKRD26P1(10379546)	./.	./.	chr8:95187119	chr16:36089795	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC019257.1	AC026765.3	-/-	+/-	chr8:1973463	chr12:114698741	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	ENSG00000257817.2	.	.	upstream	downstream	mismatches(1)	.	.	.
RGS12	.	+/+	./+	chr4:3386018	KI270733.1:131114	exon	intergenic	translocation	0	0	0	0	.	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC144568.2(51829),AC131281.2(18980)	ARHGEF10	./.	+/.	chr8:131604	chr8:1946622	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104728.16	.	.	upstream	upstream	mismatches(1)	.	.	.
ZBTB44	.	-/.	./.	chr11:130314625	KI270748.1:25791	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000196323.14	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
ARHGEF10	.	+/.	./.	chr8:1946622	KI270748.1:25791	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104728.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
STMN4(23462),TRIM35(3004)	AC025881.1(129815),CARS1P2(342927)	./.	./.	chr8:27281882	chr8:114448726	intergenic	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL672310.1	ZBTB44	+/.	-/.	chr6:170676569	chr11:130314625	intron	5'UTR	translocation	0	0	0	3	11	low	.	.	.	.	.	ENSG00000230423.3	ENSG00000196323.14	.	.	downstream	downstream	mismatches(1)	.	.	.
AC019257.1	AC116903.2	-/-	-/+	chr8:1973463	chr15:92306156	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	ENSG00000260661.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AL672310.1	ARHGEF10	+/.	+/.	chr6:170676569	chr8:1946622	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000230423.3	ENSG00000104728.16	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565352	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469911	chr7:26469920	intron	intron	duplication/ITD	0	0	0	48	9	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC019257.1	OR4F5(12222),AL627309.1(5488)	-/-	./+	chr8:1973463	chr1:83807	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL669831.3	ZBTB44	-/.	-/.	chr1:653631	chr11:130314625	intron	5'UTR	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000230021.10	ENSG00000196323.14	.	.	upstream	downstream	mismatches(1)	.	.	.
AC019257.1	AL669831.3	-/-	-/+	chr8:1973463	chr1:653631	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	ENSG00000230021.10	.	.	upstream	upstream	mismatches(1)	.	.	.
AL669831.3	ARHGEF10	-/.	+/.	chr1:653631	chr8:1946622	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000230021.10	ENSG00000104728.16	.	.	upstream	upstream	mismatches(1)	.	.	.
AL732372.2	ZBTB44	-/.	-/.	chr1:417884	chr11:130314625	intron	5'UTR	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000237094.12	ENSG00000196323.14	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU6-440P(65122),AC069148.1(40105)	FP236383.3	./.	+/.	chr2:201992665	chr21:8444186	intergenic	intron	translocation	0	0	0	2	765	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC019257.1	AL732372.2	-/-	-/+	chr8:1973463	chr1:417884	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	ENSG00000237094.12	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGEF10	AC116903.2	+/.	-/.	chr8:1946622	chr15:92306156	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104728.16	ENSG00000260661.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8447432	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8447432	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8447432	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280041	chr1:148280050	intron	intron	duplication/ITD	0	0	0	142	133	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8403225	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8403225	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LY6E(14631),C8orf31(746)	AP005436.1	./.	-/.	chr8:143038463	chr11:88092441	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LY6E(14631),C8orf31(746)	AP005436.1	./.	-/.	chr8:143038463	chr11:88092439	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
VCAM1(126106),EXTL2(7221)	VCAM1(126181),EXTL2(7146)	./.	./.	chr1:100865151	chr1:100865226	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PRKG1	PRKG1	+/.	+/.	chr10:51334141	chr10:51334196	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000185532.20	ENSG00000185532.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092443	chr21:8220958	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092439	chr21:8220958	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092437	chr21:8220958	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
ERI3	AC100849.1	-/.	-/.	chr1:44320094	chr8:19172721	intron	intron	translocation/3'-3'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000117419.16	ENSG00000253557.6	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8448164	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8403225	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8448164	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8448164	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117377	chr10:113117386	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8448164	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8448164	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8400100	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8403957	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8403225	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
CWC22(44268),AC012669.1(421572)	LIPA	./.	-/.	chr2:180051565	chr10:89228733	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107798.18	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01344	LIPA	-/.	-/.	chr1:182244066	chr10:89228733	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228918.4	ENSG00000107798.18	.	.	upstream	upstream	mismatches(1)	.	.	.
MAML3	LINC00642	-/.	+/.	chr4:139886779	chr14:90486145	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000196782.12	ENSG00000233208.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LIPA	LINC00642	-/.	+/.	chr10:89228733	chr14:90486146	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107798.18	ENSG00000233208.6	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419156	chr14:106419147	exon	exon	duplication/ITD	0	0	0	71	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	low_entropy(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419147	chr14:106419156	exon	exon	duplication/ITD	0	0	0	92	71	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	chr2:32916486	chr2:32916556	intron	intron	inversion/3'-3'	0	0	0	908	1606	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
AC074051.3	GPC3	+/.	-/.	chr16:5228832	chrX:133661569	intron	intron	translocation	0	0	0	0	195	low	.	.	.	.	.	ENSG00000285567.2	ENSG00000147257.15	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	GRHL2	+/.	+/.	chr2:32916556	chr8:101493424	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000083307.12	.	.	downstream	upstream	mismatches	.	.	.
LINC01198(14973),LRCH1(22237)	LINC01198(15029),LRCH1(22181)	./.	./.	chr13:46530931	chr13:46530987	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661636	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880795	chr19:40880810	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	TENM4(78688),AP001978.1(85249)	+/.	./.	chr2:32916556	chr11:79519718	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
PLCL1	PLCL1	+/.	+/.	chr2:198277589	chr2:198277688	intron	intron	duplication/ITD	0	0	0	23	260	low	.	.	.	.	.	ENSG00000115896.16	ENSG00000115896.16	.	.	upstream	downstream	low_entropy(2)	.	.	.
FAM86LP(4830),AC079804.3(8192)	FAM86LP(4899),AC079804.3(8123)	./.	./.	chr7:6944433	chr7:6944502	intergenic	intergenic	duplication/ITD	0	0	0	3	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
COL6A1	AC091806.1	+/.	+/.	chr21:45989308	chrX:40289160	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000142156.15	ENSG00000236393.2	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00323	AC091806.1	-/.	+/.	chr21:41145528	chrX:40289160	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226496.3	ENSG00000236393.2	.	.	upstream	downstream	mismatches(1)	.	.	.
HOXC11(3566),HOXC-AS3(300)	AC091806.1	./.	+/.	chr12:53981209	chrX:40289160	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000236393.2	.	.	downstream	downstream	mismatches(1)	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441074	chr16:51441063	exon	exon	duplication/ITD	0	0	0	22	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	duplicates(2),merge_adjacent	.	.	.
STYK1	STYK1	-/.	-/.	chr12:10630028	chr12:10630087	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000060140.9	ENSG00000060140.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00624(23210),BCL9(416)	LINC00624(23299),BCL9(327)	./.	./.	chr1:147541085	chr1:147541174	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457997	chr6:100458066	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC092651.2	AC092651.2	+/.	+/.	chr2:87105976	chr2:87105987	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000287931.1	ENSG00000287931.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
POM121	POM121	+/.	+/.	chr7:72894600	chr7:72894681	intron	intron	duplication/ITD	0	0	0	0	19	low	.	.	.	.	.	ENSG00000196313.11	ENSG00000196313.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL731559.1	AL731559.1	+/+	+/+	chr10:12563719	chr10:12563667	exon	exon	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000285994.1	ENSG00000285994.1	.	.	downstream	upstream	small_insert_size	.	.	.
MEX3A	LINC02620	-/.	-/.	chr1:156082046	chr10:104479814	5'UTR	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	ENSG00000254726.3	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
ESYT2	LINC02882	-/.	-/.	chr7:158828814	chr12:73881442	intron	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000117868.17	ENSG00000251138.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MARS1	FP236383.3(3810),FP236383.11(3718)	+/.	./.	chr12:57488235	chr21:8458602	exon	intergenic	translocation	0	0	0	0	27	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MARS1	.	+/.	./.	chr12:57488235	GL000220.1:155125	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
MARS1	.	+/.	./.	chr12:57488235	GL000220.1:111153	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RNA5SP525(131752),MIR4330(10064)	RNA5SP525(131763),MIR4330(10053)	./.	./.	chrX:151158158	chrX:151158169	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
ASAP1	LINC00940	-/.	-/.	chr8:130071028	chr12:1933581	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000153317.15	ENSG00000235049.1	.	.	downstream	downstream	mismatches(1)	.	.	.
ASAP1	LUC7L3	-/.	+/.	chr8:130071028	chr17:50719769	intron	CDS	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000153317.15	ENSG00000108848.16	.	.	downstream	upstream	mismatches(1)	.	.	.
AL020994.1	LINC02554	-/.	+/.	chr22:27316605	chr22:27316616	intron	intron	duplication/5'-5'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000226741.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LUC7L3	FP236383.3	+/.	+/.	chr17:50719769	chr21:8438951	CDS	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000108848.16	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956912	chr17:75956925	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LUC7L3	FP671120.7(395),5_8S_rRNA(872)	+/.	./.	chr17:50719769	chr21:8255909	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LUC7L3	FP671120.4	+/.	+/.	chr17:50719769	chr21:8211703	CDS	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000108848.16	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00940	FP236383.3	-/.	+/.	chr12:1933581	chr21:8394738	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000235049.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches(1)	.	.	.
LUC7L3	FP236383.3	+/.	+/.	chr17:50719769	chr21:8394738	CDS	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000108848.16	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LUC7L3	FP671120.4(3818),FP671120.10(3890)	+/.	./.	chr17:50719769	chr21:8231464	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC35E4	FP671120.4	+/+	+/+	chr22:30636545	chr21:8214792	CDS	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000100036.13	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00940	FP236383.3(3810),FP236383.11(3718)	-/.	./.	chr12:1933581	chr21:8458602	intron	intergenic	translocation	0	0	0	0	27	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL357513.1(53850),TBC1D32(180169)	SEMA3E	./.	-/.	chr6:120899325	chr7:83537019	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000170381.14	.	.	downstream	upstream	mismatches(1)	.	.	.
LUC7L3	FP236383.3(3810),FP236383.11(3718)	+/.	./.	chr17:50719769	chr21:8458602	CDS	intergenic	translocation	0	0	0	0	27	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00940	FP236383.3	-/.	+/.	chr12:1933581	chr21:8414040	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000235049.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches(1)	.	.	.
PLPP4	AC060809.1	+/.	+/.	chr10:120574169	chr15:81565320	intron	intron	translocation	0	0	0	65	191	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000259543.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LUC7L3	FP236383.3	+/.	+/.	chr17:50719769	chr21:8414040	CDS	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000108848.16	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LUC7L3	.	+/.	./.	chr17:50719769	GL000220.1:111153	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683472	chr15:81683481	intron	intron	duplication/3'-3'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2)	.	.	.
LINC00940	.	-/.	./.	chr12:1933581	GL000220.1:130060	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
LUC7L3	.	+/.	./.	chr17:50719769	GL000220.1:130060	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
LUC7L3	.	+/.	./.	chr17:50719769	KI270733.1:128008	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
LUC7L3	.	+/.	./.	chr17:50719769	KI270733.1:148230	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ASAP1	MARS1	-/.	+/.	chr8:130071028	chr12:57488235	intron	exon	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000153317.15	ENSG00000166986.15	.	.	downstream	upstream	mismatches(1)	.	.	.
MARS1	FP671120.7(395),5_8S_rRNA(872)	+/.	./.	chr12:57488235	chr21:8255909	exon	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4504),AP001994.1(77177)	MID1IP1(102282),RNU6-591P(172361)	./.	./.	chr11:119744127	chrX:38908819	intergenic	intergenic	translocation	0	0	0	1348	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734410	chr6:46734491	intron	intron	duplication/ITD	0	0	0	49	49	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176218	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397851	intron	intron	translocation/5'-5'	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	5_8S_rRNA(2113),FP236383.3(121597)	+/.	./.	chr2:32916556	chr21:8259046	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214817	intron	intron	translocation/5'-5'	0	0	0	1606	2530	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308661	chr3:19308670	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(6),merge_adjacent	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308662	chr3:19308671	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
CFAP54	CFAP54	+/.	+/.	chr12:96752082	chr12:96752133	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000188596.11	ENSG00000188596.11	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193773	chr12:16193838	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
NALCN-AS1	SLC6A14	+/.	+/.	chr13:100719808	chrX:116445508	intron	intron	translocation/5'-5'	0	0	0	1	687	low	.	.	.	.	.	ENSG00000233009.1	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(216),AC106894.1(74381)	./.	./.	chr4:16898832	chr4:16898894	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	AC124290.1	./.	+/.	chr3:31295858	chr8:35931719	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000253452.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916554	chr21:8214784	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916554	chr21:8397818	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785791	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021158	chr11:41021216	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC019131.1	FP236383.3	+/.	+/.	chr4:98936686	chr21:8442304	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000263923.1	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916554	chr21:8442048	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392814	chr1:90392823	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC002463.1	CEMIP2(21729),ABHD17B(24033)	+/.	./.	chr7:112751480	chr9:71838419	intron	intergenic	translocation	0	0	0	22	2	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	chr7:112751479	chr21:8444603	intron	intron	translocation/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	chr7:112751479	chr21:8400368	intron	intron	translocation/3'-3'	0	0	0	22	1	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	GL000220.1:116805	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683470	chr15:81683479	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC01060	UTRN	+/.	+/.	chr4:188533877	chr6:144823828	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378.6	ENSG00000152818.18	.	.	downstream	upstream	mismatches(1)	.	.	.
H3C10	UTRN	+/.	+/.	chr6:27810927	chr6:144823828	3'UTR	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828.1	ENSG00000152818.18	.	.	upstream	upstream	mismatches(1)	.	.	.
UTRN	CEMIP2(21729),ABHD17B(24033)	+/.	./.	chr6:144823828	chr9:71838419	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UTRN	GDA	+/.	+/.	chr6:144823828	chr9:72149977	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000119125.17	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	EFNB1(4569),PJA1(314122)	+/.	./.	chr21:8398074	chrX:68846729	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PLPP4	PLPP4	+/.	+/.	chr10:120574170	chr10:120574183	intron	intron	duplication/ITD	0	0	0	65	65	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000203805.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01060	AC002463.1	+/.	+/.	chr4:188533877	chr7:112751480	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000249378.6	ENSG00000223646.2	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	CHRNB4	./.	-/.	chr2:240393940	chr15:78672957	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000117971.12	.	.	upstream	downstream	mismatches(1)	.	.	.
MAST3	AL109930.1	+/+	-/-	chr19:18147023	chr20:53302065	intron	intron	translocation	0	0	0	0	1	low	.	.	Domain_of_unknown_function_(DUF1908)(100%),PDZ_domain(100%),Protein_kinase_domain(100%)|	.	.	ENSG00000099308.10	ENSG00000271774.1	.	.	downstream	downstream	mismatches(1)	.	.	.
CREBRF	AC002463.1	+/.	+/.	chr5:173056549	chr7:112751479	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000164463.12	ENSG00000223646.2	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008269.1	AC002463.1	+/.	+/.	chr2:206862123	chr7:112751480	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000229321.2	ENSG00000223646.2	.	.	downstream	upstream	mismatches(1)	.	.	.
ALG14(42804),TLCD4(1600)	.	./.	./.	chr1:95115755	GL000220.1:158223	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC115100.1(199250),AC090506.1(99952)	AC115100.1(199263),AC090506.1(99939)	./.	./.	chr18:30613323	chr18:30613336	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ALG14(42804),TLCD4(1600)	.	./.	./.	chr1:95115755	GL000220.1:114251	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ALG14(42804),TLCD4(1600)	.	./.	./.	chr1:95115755	KI270733.1:176186	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ALG14(42804),TLCD4(1600)	.	./.	./.	chr1:95115755	KI270733.1:131107	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916413	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
ALG14(42804),TLCD4(1600)	FP236383.3	./.	+/.	chr1:95115755	chr21:8442049	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNA1A	CACNA1A	-/.	-/.	chr19:13320238	chr19:13320253	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000141837.22	ENSG00000141837.22	.	.	upstream	downstream	low_entropy(1)	.	.	.
ALG14(42804),TLCD4(1600)	FP671120.4	./.	+/.	chr1:95115755	chr21:8214785	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
ALG14(42804),TLCD4(1600)	FP236383.3	./.	+/.	chr1:95115755	chr21:8397819	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3318),MYBL1(40333)	./.	./.	chr8:66521791	chr8:66521842	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
FAM9B	FAM9B	-/.	-/.	chrX:9089550	chrX:9089604	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000177138.17	ENSG00000177138.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FAM9B	FAM9B	-/.	-/.	chrX:9089550	chrX:9089601	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000177138.17	ENSG00000177138.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02458	LINC02458	-/.	-/.	chr12:89164804	chr12:89164817	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000246363.3	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
LINC02458	LINC02458	-/.	-/.	chr12:89164805	chr12:89164816	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000246363.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02458	LINC02458	-/.	-/.	chr12:89164808	chr12:89164817	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000246363.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	SDS	./.	-/.	chr3:31295858	chr12:113399003	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000135094.11	.	.	downstream	downstream	mismatches(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3323),MYBL1(40328)	./.	./.	chr8:66521791	chr8:66521847	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3329),MYBL1(40322)	./.	./.	chr8:66521791	chr8:66521853	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83580449	chr16:83580462	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	low_entropy(2)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3328),MYBL1(40323)	./.	./.	chr8:66521791	chr8:66521852	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
.	.	./.	./.	KI270733.1:145499	KI270733.1:178037	intergenic	intergenic	inversion	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3326),MYBL1(40325)	./.	./.	chr8:66521791	chr8:66521850	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
.	.	./.	./.	KI270733.1:132958	KI270733.1:145499	intergenic	intergenic	inversion	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TACR1	AC090502.3	-/.	+/.	chr2:75058241	chr12:74170989	intron	exon	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000115353.11	ENSG00000258320.1	.	.	downstream	upstream	mismatches(1)	.	.	.
.	.	./.	./.	GL000220.1:160075	KI270733.1:145499	intergenic	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
.	.	./.	./.	GL000220.1:116103	KI270733.1:145499	intergenic	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
5_8S_rRNA(3928),FP236383.3(119782)	.	./.	./.	chr21:8260861	KI270733.1:145499	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8399666	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC011503.1(42914),RNA5-8SP4(3409)	.	./.	./.	chr19:24000949	KI270733.1:145499	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC022872.1	MYO9A	+/.	-/.	chr15:71981642	chr15:71981655	intron	intron	duplication/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000261632.1	ENSG00000066933.16	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
SHISA9	SHISA9	+/.	+/.	chr16:12943337	chr16:12943346	intron	intron	duplication/ITD	0	0	0	54	51	low	.	.	.	.	.	ENSG00000237515.9	ENSG00000237515.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SHISA9	SHISA9	+/.	+/.	chr16:12943339	chr16:12943348	intron	intron	duplication/ITD	0	0	0	54	51	low	.	.	.	.	.	ENSG00000237515.9	ENSG00000237515.9	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117428	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU1-154P(711),AC239860.2(27394)	RNU1-154P(766),AC239860.2(27339)	./.	./.	chr1:145432404	chr1:145432459	intergenic	intergenic	duplication/ITD	0	0	0	188	188	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380193	chr4:121380202	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565293	chr15:81565348	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
DHRS9	RBFOX3	+/.	-/.	chr2:169079907	chr17:79442281	intron	intron	translocation/3'-3'	0	0	0	35	21	low	.	.	.	.	.	ENSG00000073737.17	ENSG00000167281.19	.	.	upstream	downstream	low_entropy	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380195	chr4:121380204	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640174	chr2:198640183	intron	intron	duplication/ITD	0	0	0	68	65	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257373	chr16:24257382	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257375	chr16:24257384	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC027369.4	HDHD5-AS1(6337),ADA2(7008)	+/.	./.	chr11:48893593	chr22:17171782	intron	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000254920.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC027369.3	HDHD5-AS1(6337),ADA2(7008)	-/.	./.	chr11:48893593	chr22:17171782	intron	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000254728.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262485	chr6:42262493	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
PAXBP1(71),C21orf62-AS1(237)	PAXBP1(84),C21orf62-AS1(224)	./.	./.	chr21:32771863	chr21:32771876	intergenic	intergenic	duplication/ITD	0	0	0	760	276	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257413	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262479	chr6:42262487	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GPRIN3(29085),AC093866.1(74075)	MACROD2	./.	+/.	chr4:89336885	chr20:14312874	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000172264.17	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC25A48	FP671120.4	+/.	+/.	chr5:135832435	chr21:8214792	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000145832.14	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092266.1(330442),LSINCT5(120126)	FP671120.4	./.	+/.	chr5:2592465	chr21:8214792	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU7-66P(128430),AL591004.1(353074)	FP236383.3	./.	+/.	chr6:66857334	chr21:8397826	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916568	chr21:8214784	intron	intron	translocation	0	0	0	1588	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
NDUFA5P10(12686),LINC01768(4671)	.	./.	./.	chr1:109823684	GL000220.1:158230	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NDUFA5P10(12686),LINC01768(4671)	.	./.	./.	chr1:109823684	GL000220.1:114258	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SLC25A48	.	+/.	./.	chr5:135832435	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000145832.14	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RNU7-66P(128430),AL591004.1(353074)	.	./.	./.	chr6:66857334	KI270733.1:176193	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PRDM1	.	+/+	./+	chr6:106098661	KI270733.1:176193	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02086	CSAG3	+/.	+/.	chr17:48677971	chrX:152758876	intron	intron	translocation	0	0	0	4	16	low	.	.	.	.	.	ENSG00000244649.5	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
AC092266.1(330442),LSINCT5(120126)	.	./.	./.	chr5:2592465	KI270733.1:176193	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RNU7-66P(128430),AL591004.1(353074)	.	./.	./.	chr6:66857334	KI270733.1:131114	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NDUFA5P10(12686),LINC01768(4671)	.	./.	./.	chr1:109823684	KI270733.1:131114	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MARK1	.	+/.	./.	chr1:220591888	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000116141.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RNU7-66P(128430),AL591004.1(353074)	FP236383.3	./.	+/.	chr6:66857334	chr21:8442056	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFA5P10(12686),LINC01768(4671)	FP236383.3	./.	+/.	chr1:109823684	chr21:8442056	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
MARK1	FP236383.3	+/.	+/.	chr1:220591888	chr21:8442056	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000116141.17	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC25A48	FP236383.3	+/.	+/.	chr5:135832435	chr21:8442056	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000145832.14	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092266.1(330442),LSINCT5(120126)	FP236383.3	./.	+/.	chr5:2592465	chr21:8442056	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFA5P10(12686),LINC01768(4671)	FP671120.4	./.	+/.	chr1:109823684	chr21:8214792	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
PRDM1	FP671120.4	+/+	+/+	chr6:106098661	chr21:8214792	5'UTR	intron	translocation	0	0	0	0	2358	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092266.1(330442),LSINCT5(120126)	FP236383.3	./.	+/.	chr5:2592465	chr21:8397826	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
BMPER	BMPER	+/.	+/.	chr7:34065216	chr7:34065225	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000164619.10	ENSG00000164619.10	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AP001823.1(3425),ELMOD1(763)	TTC7B	./.	-/.	chr11:107590328	chr14:90607064	intergenic	intron	translocation	0	0	0	683	0	low	.	.	.	.	.	.	ENSG00000165914.15	.	.	upstream	upstream	mismatches(1)	.	.	.
COBL	AP001823.1(3425),ELMOD1(763)	-/.	./.	chr7:51036846	chr11:107590328	intron	intergenic	translocation	0	0	0	0	683	low	.	.	.	.	.	ENSG00000106078.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001823.1(3425),ELMOD1(763)	HVCN1	./.	-/.	chr11:107590328	chr12:110700596	intergenic	intron	translocation	0	0	0	683	0	low	.	.	.	.	.	.	ENSG00000122986.14	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785697	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479908	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479906	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
GEMIN8(106774),UBE2E4P(107715)	GEMIN8(106839),UBE2E4P(107650)	./.	./.	chrX:14136667	chrX:14136732	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479904	intron	intron	translocation/3'-3'	0	0	0	1	855	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCD	AP001823.1(3425),ELMOD1(763)	+/.	./.	chr3:53184703	chr11:107590328	intron	intergenic	translocation	0	0	0	0	683	low	.	.	.	.	.	ENSG00000163932.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479904	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479900	intron	intron	translocation/3'-3'	0	0	0	1	988	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AC040174.1(49441),UBE2FP2(1515)	AC040174.1(49487),UBE2FP2(1469)	./.	./.	chr16:63179095	chr16:63179141	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479803	chr10:104479900	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
SHANK1	.	-/.	./.	chr19:50719189	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000161681.16	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479900	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479898	intron	intron	translocation/3'-3'	0	0	0	1	988	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479803	chr10:104479898	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479898	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479896	intron	intron	translocation/3'-3'	0	0	0	1	988	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479803	chr10:104479896	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479896	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479894	intron	intron	translocation/3'-3'	0	0	0	1	988	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479803	chr10:104479894	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479892	intron	intron	translocation/3'-3'	0	0	0	1	988	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479892	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479890	intron	intron	translocation/3'-3'	0	0	0	1	988	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	SLC39A14	+/+	+/+	chr14:106419215	chr8:22396584	exon	intron	translocation	0	0	0	86	0	low	.	.	|ZIP_Zinc_transporter(100%)	.	.	IGH-.g@-ext	ENSG00000104635.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479890	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3452),ELMOD1(736)	AP001823.1(3461),ELMOD1(727)	./.	./.	chr11:107590355	chr11:107590364	intergenic	intergenic	duplication/ITD	0	0	0	685	683	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
RGS12	FP236383.3	+/+	+/+	chr4:3386018	chr21:8397826	exon	intron	translocation	0	0	0	0	450	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
ERC2	AP001823.1(3458),ELMOD1(730)	-/.	./.	chr3:56343193	chr11:107590361	intron	intergenic	translocation	0	0	0	1	685	low	.	.	.	.	.	ENSG00000187672.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001823.1(3425),ELMOD1(763)	PSME3	./.	+/.	chr11:107590328	chr17:42832749	intergenic	intron	translocation	0	0	0	683	0	low	.	.	.	.	.	.	ENSG00000131467.11	.	.	upstream	upstream	mismatches(1)	.	.	.
ASCL2(17147),C11orf21(7893)	ASCL2(17158),C11orf21(7882)	./.	./.	chr11:2287735	chr11:2287746	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916406	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469914	chr7:26469923	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ADAMTS9-AS2	AP2B1	+/.	+/.	chr3:64736203	chr17:35583527	intron	intron	translocation	0	0	0	974	11	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000006125.18	.	.	upstream	downstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	CEP112	./.	-/.	chr1:47437186	chr17:66186033	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000154240.17	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	HDC	+/.	-/.	chr3:64736203	chr15:50254751	intron	intron	translocation/3'-3'	0	0	0	974	7	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000140287.11	.	.	upstream	downstream	mismatches(1)	.	.	.
SPRR4(7240),SPRR1A(5417)	SPRR4(7284),SPRR1A(5373)	./.	./.	chr1:152979814	chr1:152979858	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC114971.1	AC114971.1	-/.	-/.	chr5:88029155	chr5:88029201	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000287862.1	ENSG00000287862.1	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
NRG1	NRG1	+/.	+/.	chr8:32786125	chr8:32786140	intron	intron	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	ENSG00000157168.20	ENSG00000157168.20	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
AL355474.1(158050),MRPL50P4(29279)	AL355474.1(158107),MRPL50P4(29222)	./.	./.	chr10:59522125	chr10:59522182	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
PRKG1	PRKG1	+/.	+/.	chr10:51334131	chr10:51334192	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000185532.20	ENSG00000185532.20	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
ZKSCAN2-DT(64152),LINC02191(94594)	ZKSCAN2-DT(64167),LINC02191(94579)	./.	./.	chr16:25325218	chr16:25325233	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
IL22(13007),MDM1(5832)	IL22(13061),MDM1(5778)	./.	./.	chr12:68266611	chr12:68266665	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
AC063944.1	AC063944.1	-/.	-/.	chr3:107363772	chr3:107363787	intron	intron	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	ENSG00000239828.7	ENSG00000239828.7	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470837	chr10:3470918	intron	intron	duplication/ITD	0	0	0	1	23	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF385D	LINC02669	-/.	-/.	chr3:21471296	chr10:3470918	intron	intron	translocation/3'-3'	0	0	0	1	23	low	.	.	.	.	.	ENSG00000151789.12	ENSG00000233321.2	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL9P15(86759),AC073359.2(63138)	RPL9P15(86816),AC073359.2(63081)	./.	./.	chr3:154763878	chr3:154763935	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470845	chr10:3470940	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC245100.1	LINC02669	+/.	-/.	chr1:148328317	chr10:3470940	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000224481.3	ENSG00000233321.2	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01138	LINC02669	-/.	-/.	chr1:148328317	chr10:3470940	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000274020.4	ENSG00000233321.2	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH8	TCF7L2	+/.	+/.	chr6:39013855	chr10:113117391	intron	intron	translocation/3'-3'	0	0	0	0	266	low	.	.	.	.	.	ENSG00000124721.18	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	ELAVL3	+/.	-/.	chr10:113117391	chr19:11454486	intron	3'UTR	translocation/3'-3'	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000196361.10	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH8	UBE2FP2(4890),AC138305.1(128303)	+/.	./.	chr6:39013855	chr16:63185961	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000124721.18	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2FP2(4890),AC138305.1(128303)	ELAVL3	./.	-/.	chr16:63185961	chr19:11454486	intergenic	3'UTR	translocation	0	0	0	35	0	low	.	.	.	.	.	.	ENSG00000196361.10	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01088	.	+/.	./.	chr4:78943028	KI270733.1:145501	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000249307.7	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ZNF385D	UBE2FP2(4885),AC138305.1(128308)	-/.	./.	chr3:21471296	chr16:63185956	intron	intergenic	translocation	0	0	0	1	35	low	.	.	.	.	.	ENSG00000151789.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470843	chr10:3470923	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02669	ELAVL3	-/.	-/.	chr10:3470923	chr19:11454486	intron	3'UTR	translocation/3'-3'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000196361.10	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01138	UBE2FP2(4907),AC138305.1(128286)	-/.	./.	chr1:148328317	chr16:63185978	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000274020.4	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106231191	chr14:106231128	exon	exon	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(3),low_entropy(2)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106231128	chr14:106231191	exon	exon	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481698	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(8),low_entropy(12)	.	.	.
FZD6	N4BP2L1	+/+	-/+	chr8:103318609	chr13:32410191	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Fz_domain(41%)|	.	.	ENSG00000164930.12	ENSG00000139597.18	.	.	downstream	upstream	mismatches(1)	.	.	.
SPRING1	N4BP2L1	-/.	-/.	chr12:116720442	chr13:32410192	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111412.6	ENSG00000139597.18	.	.	downstream	upstream	mismatches(1)	.	.	.
AC099541.2(2097),AC099541.1(92464)	N4BP2L1	./.	-/.	chr3:40878077	chr13:32410192	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000139597.18	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479803	chr10:104479902	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
B3GALNT2	N4BP2L1	-/.	-/.	chr1:235475502	chr13:32410191	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162885.14	ENSG00000139597.18	.	.	downstream	upstream	mismatches(1)	.	.	.
AL023283.1(26252),EPM2A(45191)	N4BP2L1	./.	-/.	chr6:145337344	chr13:32410191	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000139597.18	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02590(3043),RNU6-242P(44563)	LINC02590(3056),RNU6-242P(44550)	./.	./.	chr2:43046825	chr2:43046838	intergenic	intergenic	duplication/ITD	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CHI3L2	CHI3L2	+/.	+/.	chr1:111216002	chr1:111216040	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000064886.14	ENSG00000064886.14	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331429	chr19:55331438	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC092905.1(5026),H3P12(6782)	AC092905.1(5037),H3P12(6771)	./.	./.	chr3:109402896	chr3:109402907	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5439),ZNF669(8456)	./.	./.	chr1:247091449	chr1:247091506	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EGFL7	AL021937.3	+/.	-/.	chr9:136671145	chr22:32328460	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000172889.16	ENSG00000234626.2	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAPK1	AL021937.3	-/-	-/-	chr22:21760097	chr22:32328461	3'UTR	intron	duplication	0	0	0	0	8	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000100030.15	ENSG00000234626.2	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MYO3B	AL021937.3	+/.	-/.	chr2:170507249	chr22:32328461	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000071909.19	ENSG00000234626.2	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
APP	AL021937.3	-/.	-/.	chr21:25912725	chr22:32328461	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000142192.21	ENSG00000234626.2	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
COL6A6	AL021937.3	+/.	-/.	chr3:130622194	chr22:32328458	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000206384.10	ENSG00000234626.2	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMEM255B	AL021937.3	+/.	-/.	chr13:113800211	chr22:32328460	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000184497.13	ENSG00000234626.2	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
EGFL7	SHISAL1	+/.	-/.	chr9:136671145	chr22:44265331	intron	intron	translocation	0	0	0	4	8	low	.	.	.	.	.	ENSG00000172889.16	ENSG00000138944.8	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC006511.6(3067),Y_RNA(433)	SHISAL1	./.	-/.	chr12:7975826	chr22:44265331	intergenic	intron	translocation	0	0	0	4	8	low	.	.	.	.	.	.	ENSG00000138944.8	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAPK1	SHISAL1	-/-	-/-	chr22:21760097	chr22:44265332	3'UTR	intron	duplication	0	0	0	0	8	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000100030.15	ENSG00000138944.8	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
APP	SHISAL1	-/.	-/.	chr21:25912725	chr22:44265332	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000142192.21	ENSG00000138944.8	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
COL6A6	SHISAL1	+/.	-/.	chr3:130622194	chr22:44265329	intron	intron	translocation/3'-3'	0	0	0	6	8	low	.	.	.	.	.	ENSG00000206384.10	ENSG00000138944.8	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ERI3	AC009505.1(61936),ECRG4(38924)	-/.	./.	chr1:44320094	chr2:106024322	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000117419.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM255B	SHISAL1	+/.	-/.	chr13:113800211	chr22:44265331	intron	intron	translocation	0	0	0	1	8	low	.	.	.	.	.	ENSG00000184497.13	ENSG00000138944.8	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL137803.1	SHISAL1	-/.	-/.	chr1:75720877	chr22:44265329	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000230863.3	ENSG00000138944.8	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TYRO3(16298),AC016134.1(9570)	TYRO3(16365),AC016134.1(9503)	./.	./.	chr15:41599887	chr15:41599954	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CACNA1A	CACNA1A	-/.	-/.	chr19:13336587	chr19:13336598	intron	intron	duplication/ITD	0	0	0	14	4	low	.	.	.	.	.	ENSG00000141837.22	ENSG00000141837.22	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
CYREN	LINC02620	-/.	-/.	chr7:135111985	chr10:104479908	intron	intron	translocation/3'-3'	0	0	0	0	855	low	.	.	.	.	.	ENSG00000122783.17	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AGBL3	LINC02620	+/.	-/.	chr7:135111985	chr10:104479908	intron	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	ENSG00000146856.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916405	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
U95743.1(127345),ERCC4(13049)	FP236383.3	./.	+/.	chr16:13907105	chr21:8442900	intergenic	intron	translocation	0	0	0	10	2	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479809	chr10:104479906	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336191	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CR382285.1	CR382285.1	-/.	-/.	chr21:9989187	chr21:9989231	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000270533.2	ENSG00000270533.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077763	chrX:11077788	intron	intron	duplication/ITD	0	0	0	28	24	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	duplicates(1)	.	.	.
RUFY4(18119),CXCR2(16589)	AMZ2	./.	+/.	chr2:218108700	chr17:68221219	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000196704.14	.	.	downstream	upstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257425	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626668	chrX:18626677	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864039	chr9:106864056	intron	intron	duplication/ITD	0	0	0	86	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	AC079169.1(9428),ZFX-AS1(3480)	+/.	./.	chr2:32916556	chrX:24142745	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916413	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
MXD4	.	-/.	./.	chr4:2261627	KI270733.1:145955	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000123933.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MXD4	.	-/.	./.	chr4:2261627	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000123933.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SNRPEP8(12657),AC036101.1(239871)	SNRPEP8(12670),AC036101.1(239858)	./.	./.	chr10:53051201	chr10:53051214	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NKX1-1(1234),AC147067.2(142608)	.	./.	./.	chr4:1407676	KI270733.1:145955	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL135790.1(117325),AL161788.1(27829)	AL135790.1(117334),AL161788.1(27820)	./.	./.	chr9:10749528	chr9:10749537	intergenic	intergenic	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(1)	.	.	.
NKX1-1(1234),AC147067.2(142608)	.	./.	./.	chr4:1407676	KI270733.1:145499	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NKX1-1(1234),AC147067.2(142608)	.	./.	./.	chr4:1407676	GL000220.1:127651	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NKX1-1(1234),AC147067.2(142608)	FP236383.3(1401),FP236383.11(6127)	./.	./.	chr4:1407676	chr21:8456193	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NKX1-1(1234),AC147067.2(142608)	FP671120.4(1407),FP671120.10(6301)	./.	./.	chr4:1407676	chr21:8229053	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
N4BP2L1	NTRK3	-/.	-/.	chr13:32410191	chr15:87942185	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139597.18	ENSG00000140538.16	.	.	upstream	upstream	mismatches(1)	.	.	.
NKX1-1(1234),AC147067.2(142608)	AC025183.1(1849),LINC02116(2624)	./.	./.	chr4:1407676	chr5:1853346	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAD1L1	.	-/.	./.	chr7:1966818	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000002822.16	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MAD1L1	FP236383.3(1401),FP236383.11(6127)	-/.	./.	chr7:1966818	chr21:8456193	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000002822.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025183.1(1849),LINC02116(2624)	MAD1L1	./.	-/.	chr5:1853346	chr7:1966818	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000002822.16	.	.	upstream	upstream	mismatches(1)	.	.	.
REST	.	+/.	./.	chr4:56908633	KI270733.1:145955	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000084093.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
REST	FP236383.3(1401),FP236383.11(6127)	+/.	./.	chr4:56908633	chr21:8456193	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000084093.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
REST	FP671120.4(1407),FP671120.10(6301)	+/.	./.	chr4:56908633	chr21:8229053	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000084093.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
REST	AC025183.1(1849),LINC02116(2624)	+/.	./.	chr4:56908633	chr5:1853346	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000084093.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CGRRF1	.	+/.	./.	chr14:54510146	KI270733.1:145955	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000100532.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CGRRF1	.	+/.	./.	chr14:54510146	KI270733.1:145499	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000100532.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CGRRF1	FP236383.3(1401),FP236383.11(6127)	+/.	./.	chr14:54510146	chr21:8456193	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000100532.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CGRRF1	FP671120.4(1407),FP671120.10(6301)	+/.	./.	chr14:54510146	chr21:8229053	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000100532.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
OLFM1	.	+/.	./.	chr9:135087395	KI270733.1:145499	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000130558.20	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
OLFM1	.	+/.	./.	chr9:135087395	GL000220.1:127651	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000130558.20	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
OLFM1	FP671120.4(1407),FP671120.10(6301)	+/.	./.	chr9:135087395	chr21:8229053	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130558.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NKX1-1(1233),AC147067.2(142609)	AL353611.2(21963),OLFM1(57605)	./.	./.	chr4:1407675	chr9:135017817	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	chr1:201702674	chr1:201702687	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000231871.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MXD4	AC025183.1(1849),LINC02116(2624)	-/.	./.	chr4:2261627	chr5:1853346	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000123933.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
OTX2P1(77424),PCSK5(88645)	OTX2P1(77439),PCSK5(88630)	./.	./.	chr9:75801999	chr9:75802014	intergenic	intergenic	duplication/ITD	0	0	0	24	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457990	chr6:100458071	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(24),low_entropy(10)	.	.	.
REST	AL353611.2(21963),OLFM1(57605)	+/.	./.	chr4:56908632	chr9:135017817	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000084093.19	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM207BP(9514),GXYLT1P1(17394)	FAM207BP(9564),GXYLT1P1(17344)	./.	./.	chr13:18707021	chr13:18707071	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PAXBP1(62),C21orf62-AS1(246)	PAXBP1(73),C21orf62-AS1(235)	./.	./.	chr21:32771854	chr21:32771865	intergenic	intergenic	duplication/ITD	0	0	0	721	276	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
STMN4(23462),TRIM35(3004)	COPZ1	./.	+/.	chr8:27281882	chr12:54304542	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111481.10	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	GPC3	+/.	-/.	chr15:81565294	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
AL353611.2(21963),OLFM1(57605)	OLFM1	./+	+/+	chr9:135017817	chr9:135087396	intergenic	CDS	deletion/read-through	0	0	0	0	0	low	.	.	|Neurogenesis_glycoprotein(100%),Olfactomedin-like_domain(100%)	.	.	.	ENSG00000130558.20	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	IGSF1	+/.	-/.	chr21:8217333	chrX:131338235	intron	intron	translocation/3'-3'	0	0	0	4	7	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000147255.19	.	.	upstream	downstream	mismatches(1)	.	.	.
NXPH3	.	+/.	./.	chr17:49576096	KI270733.1:145499	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000182575.8	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NXPH3	FP236383.3(1401),FP236383.11(6127)	+/.	./.	chr17:49576096	chr21:8456193	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182575.8	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	CCDC33	+/.	+/.	chr2:32916556	chr15:74245769	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000140481.15	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	AL135908.1(75889),TFAP2D(432)	+/.	./.	chr2:32916556	chr6:50713094	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	ANAPC1P6(812),PLGLA(3112)	+/.	./.	chr2:32916556	chr2:106379059	intron	intergenic	inversion	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	TMEM182	+/.	+/.	chr2:32916556	chr2:102838700	intron	intron	deletion	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000170417.16	.	.	downstream	upstream	mismatches	.	.	.
IGH-@-ext	TCF7L2	+/+	+/-	chr14:106419215	chr10:113117383	exon	intron	translocation/5'-5'	0	0	0	86	197	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	AC090517.5	+/.	-/.	chr2:32916556	chr15:56885943	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000285331.2	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	PLGLB1(3038),ANAPC1P2(6925)	+/.	./.	chr2:32916556	chr2:87024890	intron	intergenic	deletion	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	AC009963.1(822),RPL22P8(9885)	+/.	./.	chr2:32916556	chr2:107905063	intron	intergenic	inversion	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392905	chr11:88092441	intron	intron	translocation/3'-3'	0	0	0	47	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392905	chr11:88092439	intron	intron	translocation/3'-3'	0	0	0	47	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392905	chr11:88092437	intron	intron	translocation/3'-3'	0	0	0	47	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261464	chr1:162261547	intron	intron	duplication/ITD	0	0	0	59	49	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LY6E(14617),C8orf31(760)	AP005436.1	./.	-/.	chr8:143038449	chr11:88092445	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8403957	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392905	chr11:88092445	intron	intron	translocation/3'-3'	0	0	0	47	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
LY6E(14617),C8orf31(760)	AP005436.1	./.	-/.	chr8:143038449	chr11:88092443	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392905	chr11:88092443	intron	intron	translocation/3'-3'	0	0	0	47	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
RNU1-154P(724),AC239860.2(27381)	RNU1-154P(733),AC239860.2(27372)	./.	./.	chr1:145432417	chr1:145432426	intergenic	intergenic	duplication/ITD	0	0	0	188	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
KRT8P37(31729),CHCHD3P1(73098)	KRT8P37(31790),CHCHD3P1(73037)	./.	./.	chr10:8546835	chr10:8546896	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CASC2	AC011503.1(44853),RNA5-8SP4(1470)	+/.	./.	chr10:118114953	chr19:24002888	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000177640.16	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
SDK1	AC011503.1(44853),RNA5-8SP4(1470)	+/.	./.	chr7:3871209	chr19:24002888	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000146555.19	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396557	chr8:22396566	intron	intron	duplication/ITD	0	0	0	308	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1)	.	.	.
GPC6	GPC6	+/.	+/.	chr13:93833099	chr13:93833156	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000183098.11	ENSG00000183098.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
DAPK1	FP236383.3	+/.	+/.	chr9:87564614	chr21:8444186	intron	intron	translocation	0	0	0	9	765	low	.	.	.	.	.	ENSG00000196730.13	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC068643.1	RABEP2	-/.	-/.	chr12:103107649	chr16:28906290	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000257703.6	ENSG00000177548.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008691.1	RABEP2	+/.	-/.	chr5:159357317	chr16:28906290	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000249738.10	ENSG00000177548.13	.	.	upstream	downstream	mismatches(1)	.	.	.
EN1(46917),MARCO(47629)	RABEP2	./.	-/.	chr2:118894565	chr16:28906290	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000177548.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AC068643.1	AC011503.1(44853),RNA5-8SP4(1470)	-/.	./.	chr12:103107648	chr19:24002888	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000257703.6	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC008691.1	AC011503.1(44853),RNA5-8SP4(1470)	+/.	./.	chr5:159357316	chr19:24002888	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000249738.10	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
EN1(46916),MARCO(47630)	AC011503.1(44853),RNA5-8SP4(1470)	./.	./.	chr2:118894564	chr19:24002888	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
IFNLR1	LINC00486	-/.	+/.	chr1:24187447	chr2:32916556	intron	intron	translocation	0	0	0	1	1606	low	.	.	.	.	.	ENSG00000185436.12	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
MAPK8IP1P1(9493),AC005829.2(5014)	MYH9	./.	-/.	chr17:46254537	chr22:36357561	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100345.22	.	.	downstream	upstream	mismatches(1)	.	.	.
AC108517.2(305838),Y_RNA(47534)	AC126544.2(3620),AC126544.1(622)	./.	./.	chr4:59486252	chr17:45591999	intergenic	intergenic	translocation	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PCAT1	AC244102.3	+/.	-/.	chr8:126750632	chrX:152576447	intron	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	ENSG00000253438.4	ENSG00000287394.1	.	.	upstream	upstream	mismatches(1)	.	.	.
PDCD4	SRPX	+/.	-/.	chr10:110896212	chrX:38180137	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150593.18	ENSG00000101955.15	.	.	upstream	upstream	mismatches(1)	.	.	.
PREPL	IQCH	-/.	+/.	chr2:44361340	chr15:67307531	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138078.16	ENSG00000103599.20	.	.	downstream	upstream	mismatches(1)	.	.	.
PREPL	FUT8	-/.	+/.	chr2:44361340	chr14:65662720	intron	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000138078.16	ENSG00000033170.17	.	.	downstream	upstream	mismatches(1)	.	.	.
PREPL	ACYP1	-/.	-/.	chr2:44361340	chr14:75068465	intron	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000138078.16	ENSG00000119640.9	.	.	downstream	downstream	mismatches(1)	.	.	.
PREPL	PDCD4	-/.	+/.	chr2:44361340	chr10:110896212	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138078.16	ENSG00000150593.18	.	.	downstream	upstream	mismatches(1)	.	.	.
IQCH-AS1	GLRA2	-/.	+/.	chr15:67307531	chrX:14604660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259673.6	ENSG00000101958.14	.	.	upstream	upstream	mismatches(1)	.	.	.
IQCH	GLRA2	+/.	+/.	chr15:67307531	chrX:14604660	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000103599.20	ENSG00000101958.14	.	.	upstream	upstream	mismatches(1)	.	.	.
FUT8	GLRA2	+/.	+/.	chr14:65662720	chrX:14604660	intron	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000033170.17	ENSG00000101958.14	.	.	upstream	upstream	mismatches(1)	.	.	.
MPPED2	IQCH-AS1	-/.	-/.	chr11:30586257	chr15:67307531	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000066382.17	ENSG00000259673.6	.	.	downstream	upstream	mismatches(1)	.	.	.
MPPED2	IQCH	-/.	+/.	chr11:30586257	chr15:67307531	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000066382.17	ENSG00000103599.20	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02565(107099),RNU6-737P(6309)	LINC02565(107112),RNU6-737P(6296)	./.	./.	chr18:57278293	chr18:57278306	intergenic	intergenic	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MPPED2	ZC2HC1C	-/.	+/.	chr11:30586257	chr14:75068465	5'UTR	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000066382.17	ENSG00000119703.15	.	.	downstream	downstream	mismatches(1)	.	.	.
MPPED2	ACYP1	-/.	-/.	chr11:30586257	chr14:75068465	5'UTR	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000066382.17	ENSG00000119640.9	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM154	ZFR	-/.	-/.	chr4:152661288	chr5:32370305	intron	intron	translocation/5'-5'	0	0	0	99	6	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000056097.16	.	.	upstream	upstream	low_entropy	.	.	.
AL450426.1(19778),OR13C8(12196)	IQCH	./.	+/.	chr9:104556972	chr15:67307531	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000103599.20	.	.	upstream	upstream	mismatches(1)	.	.	.
CHORDC1P3(22410),SMIM31(4948)	DOT1L	./.	+/.	chr4:164749116	chr19:2209231	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000104885.18	.	.	upstream	upstream	mismatches(1)	.	.	.
AL450426.1(19778),OR13C8(12196)	ACYP1	./.	-/.	chr9:104556972	chr14:75068465	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000119640.9	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP77	IQCH	+/.	+/.	chr9:132457328	chr15:67307531	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188523.9	ENSG00000103599.20	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521058	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	duplicates(2)	.	.	.
GEMIN8(106758),UBE2E4P(107731)	GEMIN8(106785),UBE2E4P(107704)	./.	./.	chrX:14136651	chrX:14136678	intergenic	intergenic	duplication/ITD	0	0	0	35	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
ZC2HC1C	GLRA2	+/.	+/.	chr14:75068465	chrX:14604660	intron	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000119703.15	ENSG00000101958.14	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP77	PDCD4	+/.	+/.	chr9:132457328	chr10:110896212	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188523.9	ENSG00000150593.18	.	.	downstream	upstream	mismatches(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491165	chr11:105491224	intron	intron	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1)	.	.	.
CCDC187(138),DKFZP434A062(15264)	FUT8	./.	+/.	chr9:136307039	chr14:65662720	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000033170.17	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC187(138),DKFZP434A062(15264)	ZC2HC1C	./.	+/.	chr9:136307039	chr14:75068465	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000119703.15	.	.	downstream	downstream	mismatches(1)	.	.	.
SGIP1	NCOA5LP(16498),CNEP1R1(39182)	+/.	./.	chr1:66631718	chr16:49985228	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000118473.22	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC187(138),DKFZP434A062(15264)	ACYP1	./.	-/.	chr9:136307039	chr14:75068465	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000119640.9	.	.	downstream	downstream	mismatches(1)	.	.	.
IQCH-AS1	SRPX	-/.	-/.	chr15:67307531	chrX:38180137	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259673.6	ENSG00000101955.15	.	.	upstream	upstream	mismatches(1)	.	.	.
ACYP1	SRPX	-/.	-/.	chr14:75068465	chrX:38180137	intron	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000119640.9	ENSG00000101955.15	.	.	downstream	upstream	mismatches(1)	.	.	.
MAN1C1	LINC01495	+/.	-/.	chr1:25617597	chr11:22480925	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117643.15	ENSG00000255323.6	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01495	LINC02302(16053),DOCK11P1(61434)	-/.	./.	chr11:22480925	chr14:44798882	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255323.6	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GPC6	GPC6-AS2	+/.	-/.	chr13:93833099	chr13:93833156	intron	intron	duplication/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000183098.11	ENSG00000224394.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AMZ2	LINC01495	+/+	-/+	chr17:68205975	chr11:22480925	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196704.14	ENSG00000255323.6	.	.	downstream	upstream	mismatches(1)	.	.	.
CREB3L3	CREB3L3	+/.	+/.	chr19:4156082	chr19:4156095	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000060566.14	ENSG00000060566.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00940	FP671120.4	-/.	+/.	chr12:1933581	chr21:8211703	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000235049.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01495	GRIN3B	-/.	+/.	chr11:22480927	chr19:1008815	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000255323.6	ENSG00000116032.5	.	.	upstream	upstream	mismatches(1)	.	.	.
STUM	LINC01495	+/.	-/.	chr1:226602660	chr11:22480925	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000203685.10	ENSG00000255323.6	.	.	upstream	upstream	mismatches(1)	.	.	.
PPID	LINC01495	-/.	-/.	chr4:158723158	chr11:22480925	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171497.5	ENSG00000255323.6	.	.	upstream	upstream	mismatches(1)	.	.	.
ASCL2(514),C11orf21(24526)	LINC01495	./.	-/.	chr11:2271102	chr11:22480925	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255323.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565296	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
PDPN	LINC01495	+/.	-/.	chr1:13583776	chr11:22480931	5'UTR	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000162493.17	ENSG00000255323.6	.	.	upstream	upstream	mismatches(1)	.	.	.
DDB2	.	+/.	./.	chr11:47233103	KI270733.1:173418	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	duplicates(2)	.	.	.
FP236383.3	AP001599.1	+/.	+/.	chr21:8439284	chr21:26914103	intron	intron	duplication	0	0	0	0	15	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000223563.1	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	chr11:47233103	chr21:8439285	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	ENSG00000280441.3	.	.	downstream	upstream	duplicates(2)	.	.	.
FP671120.4	AP001599.1	+/.	+/.	chr21:8212034	chr21:26914103	intron	intron	duplication	0	0	0	3	15	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000223563.1	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DDB2	FP671120.4	+/.	+/.	chr11:47233103	chr21:8212035	intron	intron	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000134574.12	ENSG00000278996.1	.	.	downstream	upstream	duplicates(2)	.	.	.
AP001599.1	.	+/.	./.	chr21:26914103	GL000220.1:155458	intron	intergenic	translocation	0	0	0	15	.	low	.	.	.	.	.	ENSG00000223563.1	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916568	chr21:8442048	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
DDB2	.	+/.	./.	chr11:47233103	GL000220.1:155459	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	duplicates(2)	.	.	.
AP001599.1	.	+/.	./.	chr21:26914103	KI270733.1:128339	intron	intergenic	translocation	0	0	0	15	.	low	.	.	.	.	.	ENSG00000223563.1	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AP001599.1	.	+/.	./.	chr21:26914103	KI270733.1:173417	intron	intergenic	translocation	0	0	0	15	.	low	.	.	.	.	.	ENSG00000223563.1	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565298	chr15:81565307	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMCO1	TMCO1	-/-	-/-	chr1:165724975	chr1:165725023	3'UTR	3'UTR	duplication/ITD	0	0	0	10	10	low	.	.	Integral_membrane_protein_EMC3/TMCO1-like(100%)|	.	.	ENSG00000143183.18	ENSG00000143183.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CCDC144NL-AS1	CCDC144NL-AS1	+/.	+/.	chr17:20905522	chr17:20905579	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000233098.9	ENSG00000233098.9	.	.	upstream	downstream	low_entropy(1)	.	.	.
SPANXN4(33390),RN7SKP81(22255)	SPANXN4(33453),RN7SKP81(22192)	./.	./.	chrX:143068092	chrX:143068155	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:142129573	chr2:142129621	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	5_8S_rRNA(2082),FP236383.3(121628)	+/.	./.	chr2:32916556	chr21:8259015	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
TMCC3(113771),KRT19P2(69819)	GPC3	./.	-/.	chr12:94764328	chrX:133661605	intergenic	intron	translocation	0	0	0	21	195	low	.	.	.	.	.	.	ENSG00000147257.15	.	.	downstream	downstream	low_entropy(1)	.	.	.
DNMBP(72),CPN1(32174)	5_8S_rRNA(2694),FP236383.3(121016)	./.	./.	chr10:100010019	chr21:8259627	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNMBP(72),CPN1(32174)	FP236383.3	./.	+/.	chr10:100010019	chr21:8398432	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683464	chr15:81683473	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1)	.	.	.
DNMBP(72),CPN1(32174)	FP236383.3	./.	+/.	chr10:100010019	chr21:8442661	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
DNMBP(72),CPN1(32174)	.	./.	./.	chr10:100010019	GL000220.1:158835	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DNMBP(72),CPN1(32174)	.	./.	./.	chr10:100010019	KI270733.1:176798	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DNMBP(72),CPN1(32174)	.	./.	./.	chr10:100010019	KI270733.1:131719	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LDB2(223),AC106894.1(74374)	LINC02742	./.	+/.	chr4:16898901	chr11:29053269	intergenic	intron	translocation	0	0	0	83	3	low	.	.	.	.	.	.	ENSG00000249867.6	.	.	downstream	upstream	mismatches	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565344	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565344	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886351	chr10:44886360	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864058	chr9:106864067	intron	intron	duplication/ITD	0	0	0	87	86	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AP003066.1	AP003066.1	+/.	+/.	chr11:96914343	chr11:96914352	intron	intron	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	ENSG00000254587.2	ENSG00000254587.2	.	.	upstream	downstream	duplicates(2)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117452	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117450	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP003066.1	AP003066.1	+/.	+/.	chr11:96914335	chr11:96914344	intron	intron	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	ENSG00000254587.2	ENSG00000254587.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117366	chr10:113117381	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797752	chr17:57797761	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521067	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916561	chr21:8217231	intron	intron	translocation/5'-5'	0	0	0	1588	34	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661622	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458060	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FAM217B(5307),CDH26(4436)	FAM217B(5316),CDH26(4427)	./.	./.	chr20:59953987	chr20:59953996	intergenic	intergenic	duplication/ITD	0	0	0	9	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	.	+/.	./.	chr15:81565292	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
KCNMB2-AS1	LINC01163	-/.	+/.	chr3:178655140	chr10:128239620	intron	intron	translocation/3'-3'	0	0	0	13	8	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000280953.2	.	.	downstream	upstream	duplicates(1)	.	.	.
KCNMB2	LINC01163	+/.	+/.	chr3:178655140	chr10:128239620	intron	intron	translocation	0	0	0	13	8	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000280953.2	.	.	downstream	upstream	duplicates(1)	.	.	.
KCNMB2-AS1	AL050402.1(52849),AL133456.1(50930)	-/.	./.	chr3:178655096	chr22:27512909	intron	intergenic	translocation	0	0	0	13	1	low	.	.	.	.	.	ENSG00000237978.6	.	.	.	upstream	downstream	duplicates(1)	.	.	.
HDAC7	AL050402.1(52854),AL133456.1(50925)	-/.	./.	chr12:47810805	chr22:27512914	intron	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000061273.18	.	.	.	upstream	downstream	duplicates(1)	.	.	.
GPR89B	AL050402.1(52854),AL133456.1(50925)	+/.	./.	chr1:147970492	chr22:27512914	intron	intergenic	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000188092.15	.	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC02554	AL050402.1(52848),AL133456.1(50931)	+/.	./.	chr22:27316602	chr22:27512908	intron	intergenic	duplication	0	0	0	13	1	low	.	.	.	.	.	ENSG00000226741.2	.	.	.	upstream	downstream	duplicates(1)	.	.	.
PRDM1	FP236383.3	+/+	+/+	chr6:106098661	chr21:8397826	5'UTR	intron	translocation	0	0	0	0	450	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01163	AL050402.1(52854),AL133456.1(50925)	+/.	./.	chr10:128239620	chr22:27512914	intron	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000280953.2	.	.	.	upstream	downstream	duplicates(1)	.	.	.
KCNMB2-AS1	WDFY3	-/.	-/.	chr3:178655139	chr4:84695553	intron	intron	translocation/3'-3'	0	0	0	13	10	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000163625.16	.	.	downstream	downstream	duplicates(1)	.	.	.
KCNMB2	WDFY3	+/.	-/.	chr3:178655139	chr4:84695553	intron	intron	translocation	0	0	0	13	10	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000163625.16	.	.	downstream	downstream	duplicates(1)	.	.	.
AL596087.2	AL050402.1(52852),AL133456.1(50927)	+/.	./.	chr1:166288031	chr22:27512912	intron	intergenic	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000229588.2	.	.	.	upstream	downstream	duplicates(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481687	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC112204.2(4040),UGT3A1(6973)	CRLF2	./.	-/.	chr5:35944033	chrX:1260779	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000205755.12	.	.	downstream	downstream	mismatches(1)	.	.	.
AC112204.2(4066),UGT3A1(6947)	CRLF2	./.	-/.	chr5:35944059	chrX:1260779	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000205755.12	.	.	upstream	downstream	mismatches(1)	.	.	.
AC112204.2(4066),UGT3A1(6947)	Z96074.1	./.	+/.	chr5:35944059	chrX:137806579	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000283692.2	.	.	upstream	downstream	mismatches(1)	.	.	.
BTN1A1	SHANK1	+/.	-/.	chr6:26504369	chr19:50673293	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000124557.13	ENSG00000161681.16	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF675	ZNF675	-/.	-/.	chr19:23652263	chr19:23652327	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197372.10	ENSG00000197372.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC137695.3	MARK2P15(97641),LINC02650(260290)	-/.	./.	chr3:129278023	chr10:83412116	exon	intergenic	translocation	0	0	0	1	2	low	.	.	.	.	.	ENSG00000286729.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMOD1	MARK2P15(97641),LINC02650(260290)	+/.	./.	chr9:97579228	chr10:83412116	intron	intergenic	translocation	0	0	0	1	2	low	.	.	.	.	.	ENSG00000136842.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104078.2(26159),MIR1255B1(7797)	VPS41(14371),POU6F2(31144)	./.	./.	chr4:36418569	chr7:38946765	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RNA5SP127(15811),H3P11(24349)	PTPRG	./.	+/.	chr3:31244658	chr3:61563137	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000144724.20	.	.	upstream	downstream	mismatches(1)	.	.	.
ERI3	VPS41(14371),POU6F2(31144)	-/.	./.	chr1:44274675	chr7:38946765	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117419.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DAZL	VPS41(14371),POU6F2(31144)	-/.	./.	chr3:16642147	chr7:38946765	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000092345.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DAZL	PTPRG	-/.	+/.	chr3:16642146	chr3:61563137	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000092345.14	ENSG00000144724.20	.	.	downstream	downstream	mismatches(1)	.	.	.
ZIC1	VPS41(14371),POU6F2(31144)	+/.	./.	chr3:147473054	chr7:38946765	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152977.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RAP1GAP2	RNU6-974P(265648),EIF3JP1(230694)	+/.	./.	chr17:2921057	chrX:82266975	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000132359.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	FP236383.3	./.	+/.	chr5:2805294	chr21:8416209	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:116678	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
RAP1GAP2	SKAP1	+/.	-/.	chr17:2921057	chr17:48210864	intron	intron	duplication/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000132359.15	ENSG00000141293.16	.	.	upstream	downstream	mismatches(1)	.	.	.
LPGAT1-AS1(81715),AC092814.2(831)	RAP1GAP2	./.	+/.	chr1:211935418	chr17:2921057	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000132359.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092944.1	AC092944.1	+/.	+/.	chr3:157252470	chr3:157252552	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000243176.6	ENSG00000243176.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
FP236383.3(3751),FP236383.11(3777)	FP236383.3(3847),FP236383.11(3681)	./.	./.	chr21:8458543	chr21:8458639	intergenic	intergenic	duplication/ITD	0	0	0	19	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8413981	chr21:8414077	intron	intron	duplication/ITD	0	0	0	23	24	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396548	chr8:22396557	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
VDR	AC005332.5	-/.	+/.	chr12:47857799	chr17:68133848	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111424.12	ENSG00000277476.1	.	.	downstream	upstream	homopolymer(1)	.	.	.
GALNTL6	LUC7L2(6372),RNU6-911P(18911)	+/.	./.	chr4:172997046	chr7:139429829	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000174473.16	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC114321.1(205455),AC026403.1(21411)	LUC7L2(6371),RNU6-911P(18912)	./.	./.	chr5:166360894	chr7:139429828	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AGTR1(33666),CPB1(14428)	AGTR1(33719),CPB1(14375)	./.	./.	chr3:148776674	chr3:148776727	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ROCK2	ROCK2	-/.	-/.	chr2:11295959	chr2:11296050	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000134318.14	ENSG00000134318.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
POM121	POM121	+/.	+/.	chr7:72894600	chr7:72894671	intron	intron	duplication/ITD	0	0	0	0	19	low	.	.	.	.	.	ENSG00000196313.11	ENSG00000196313.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380231	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC046134.2	AC046134.2	+/.	+/.	chr3:139428079	chr3:139428129	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000248932.6	ENSG00000248932.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
UGT3A2	UGT3A2	-/.	-/.	chr5:36067818	chr5:36067873	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000168671.10	ENSG00000168671.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
STYK1	STYK1	-/.	-/.	chr12:10630027	chr12:10630077	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000060140.9	ENSG00000060140.9	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP69	CFAP69	+/.	+/.	chr7:90250181	chr7:90250232	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000105792.19	ENSG00000105792.19	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00624(23192),BCL9(434)	LINC00624(23289),BCL9(337)	./.	./.	chr1:147541067	chr1:147541164	intergenic	intergenic	duplication/ITD	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TBX2	TBX2-AS1	+/.	-/.	chr17:61402925	chr17:61402971	intron	intron	duplication/3'-3'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000121068.14	ENSG00000267280.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
TBX2-AS1	TBX2	-/.	+/.	chr17:61402925	chr17:61402971	intron	intron	duplication/5'-5'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000267280.5	ENSG00000121068.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
SDK1	NLGN4X	+/.	-/.	chr7:3911338	chrX:6227403	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000146555.19	ENSG00000146938.16	.	.	downstream	downstream	mismatches(1)	.	.	.
KLHL29	RANBP3	+/.	-/.	chr2:23548870	chr19:5977300	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000031823.14	.	.	upstream	upstream	mismatches(1)	.	.	.
RANBP3	TGM3(7996),TGM6(31826)	-/.	./.	chr19:5977300	chr20:2349075	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000031823.14	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262481	chr6:42262489	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDH8	RANBP3	-/.	-/.	chr16:61831042	chr19:5977300	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000150394.14	ENSG00000031823.14	.	.	downstream	upstream	mismatches(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380600	chr20:36380609	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MRC2	SEMA3D	+/+	-/-	chr17:62689981	chr7:85185950	CDS	intron	translocation	0	0	0	9	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|Sema_domain(100%)	.	.	ENSG00000011028.14	ENSG00000153993.13	.	.	downstream	downstream	mismatches(1)	.	.	.
KLHL29	GTPBP3	+/.	+/.	chr2:23548870	chr19:17341750	intron	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000130299.17	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNA1E	GTPBP3	+/.	+/.	chr1:181644873	chr19:17341750	intron	3'UTR	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000198216.12	ENSG00000130299.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079193.1(4367),ZDHHC2(1227)	RANBP3	./.	-/.	chr8:17155255	chr19:5977300	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000031823.14	.	.	downstream	upstream	mismatches(1)	.	.	.
CDH8	GTPBP3	-/.	+/.	chr16:61831042	chr19:17341750	intron	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150394.14	ENSG00000130299.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079193.1(4367),ZDHHC2(1227)	GTPBP3	./.	+/.	chr8:17155255	chr19:17341750	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000130299.17	.	.	downstream	upstream	mismatches(1)	.	.	.
SDK1	GTPBP3	+/.	+/.	chr7:3911338	chr19:17341750	intron	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146555.19	ENSG00000130299.17	.	.	downstream	upstream	mismatches(1)	.	.	.
KLHL29	NLGN4X	+/.	-/.	chr2:23548870	chrX:6227403	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000146938.16	.	.	upstream	downstream	mismatches(1)	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880795	chr19:40880860	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00940	.	-/.	./.	chr12:1933581	GL000220.1:155125	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
SDK1	RANBP3	+/.	-/.	chr7:3911338	chr19:5977300	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000146555.19	ENSG00000031823.14	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479906	chr11:88092338	intron	intron	translocation	0	0	0	855	783	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	downstream	upstream	mismatches	.	.	.
LY6E(14631),C8orf31(746)	LINC02620	./.	-/.	chr8:143038463	chr10:104479906	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092332	chr11:88092437	intron	intron	duplication	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
LY6E(14631),C8orf31(746)	LINC02620	./.	-/.	chr8:143038463	chr10:104479908	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
LY6E(14631),C8orf31(746)	AP005436.1	./.	-/.	chr8:143038463	chr11:88092443	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479902	chr11:88092338	intron	intron	translocation	0	0	0	855	783	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	downstream	upstream	mismatches	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661614	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LY6E(14631),C8orf31(746)	LINC02620	./.	-/.	chr8:143038463	chr10:104479902	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479904	chr11:88092338	intron	intron	translocation	0	0	0	855	783	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	downstream	upstream	mismatches	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419149	chr14:106419140	exon	exon	duplication/ITD	0	0	0	71	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	low_entropy(1)	.	.	.
PDGFRB	SHISAL1	-/.	-/.	chr5:150124193	chr22:44265330	exon	intron	translocation/3'-3'	0	0	0	4	8	low	.	.	.	.	.	ENSG00000113721.14	ENSG00000138944.8	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419140	chr14:106419149	exon	exon	duplication/3'-3'	0	0	0	92	71	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419140	chr14:106419149	exon	exon	duplication/5'-5'	0	0	0	92	71	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
CAMK2N2(223),ECE2(14235)	AC005921.1(11315),WFIKKN2(25684)	./.	./.	chr3:184261776	chr17:50808966	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262487	chr6:42262495	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
OTX2P1(77432),PCSK5(88637)	OTX2P1(77441),PCSK5(88628)	./.	./.	chr9:75802007	chr9:75802016	intergenic	intergenic	duplication/ITD	0	0	0	24	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419140	chr14:106419149	exon	exon	duplication/ITD	0	0	0	92	71	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
KRT18P56(32213),LINC00604(140754)	AP003390.1(4496),AP001994.1(77185)	./.	./.	chr5:40099413	chr11:119744119	intergenic	intergenic	translocation	0	0	0	0	1441	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATXN7L3B(18465),AC123904.2(92666)	ATXN7L3B(18514),AC123904.2(92617)	./.	./.	chr12:74563895	chr12:74563944	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LY6E(14609),C8orf31(768)	AP005436.1	./.	-/.	chr8:143038441	chr11:88092445	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LINC02474	PTPRG	+/.	+/.	chr1:221982988	chr3:61563137	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228437.5	ENSG00000144724.20	.	.	downstream	downstream	mismatches(1)	.	.	.
LY6E(14609),C8orf31(768)	AP005436.1	./.	-/.	chr8:143038441	chr11:88092443	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470843	chr10:3470931	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880790	chr19:40880849	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC025470.2	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	chr5:57533339	chr21:8259021	exon	intergenic	translocation	0	0	0	6	35	low	.	.	.	.	.	ENSG00000250961.2	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10902),AP000345.1(8365)	./.	./.	chr22:23558642	chr22:23558699	intergenic	intergenic	duplication/ITD	0	0	0	140	140	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117383	chr10:113117392	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FAM149A	NCOA5LP(16498),CNEP1R1(39182)	+/.	./.	chr4:186137013	chr16:49985228	intron	intergenic	translocation	0	0	0	7	20	low	.	.	.	.	.	ENSG00000109794.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22755),NRXN3(87340)	./.	./.	chr14:78082946	chr14:78083033	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(1),merge_adjacent	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479823	intergenic	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683472	chr15:81683481	intron	intron	duplication/ITD	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479825	chr10:104479834	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479825	intergenic	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479829	intergenic	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479831	chr10:104479840	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479831	intergenic	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
HDC	HDC	-/.	-/.	chr15:50254735	chr15:50254777	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000140287.11	ENSG00000140287.11	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396370	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479813	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396372	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916578	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396374	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479817	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479819	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396378	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479821	intergenic	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479833	intergenic	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AL355674.1(96148),RORB-AS1(4825)	AL355674.1(96195),RORB-AS1(4778)	./.	./.	chr9:74480726	chr9:74480773	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3833),GPN2(7843)	./.	./.	chr1:26868243	chr1:26868289	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4)	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916411	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
AC104465.1(74383),AC092810.3(31644)	AC104465.1(74425),AC092810.3(31602)	./.	./.	chr1:209075859	chr1:209075901	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AK4P2(49995),SLC38A9(23296)	WDFY4	./.	+/.	chr5:55602549	chr10:48868979	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000128815.19	.	.	downstream	downstream	mismatches(1)	.	.	.
KDM7A	WDFY4	-/.	+/.	chr7:140141509	chr10:48868978	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000006459.11	ENSG00000128815.19	.	.	downstream	downstream	mismatches(1)	.	.	.
FNDC3B	FNDC3B	+/.	+/.	chr3:172358955	chr3:172359004	intron	intron	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	ENSG00000075420.13	ENSG00000075420.13	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
BBS9	LBX1-AS1	+/.	+/.	chr7:33410882	chr10:101235755	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000122507.21	ENSG00000227128.5	.	.	upstream	upstream	homopolymer(1)	.	.	.
RRP36	BBS9	+/.	+/.	chr6:43030574	chr7:33410882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000124541.7	ENSG00000122507.21	.	.	downstream	upstream	homopolymer(1)	.	.	.
UVSSA	FP236383.3	+/.	+/.	chr4:1346670	chr21:8411576	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000163945.19	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
UVSSA	FP236383.3(5328),FP236383.11(2200)	+/.	./.	chr4:1346670	chr21:8460120	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ILKAP	FP236383.3(5328),FP236383.11(2200)	-/.	./.	chr2:238203140	chr21:8460120	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UVSSA	FP236383.3	+/.	+/.	chr4:1346670	chr21:8415558	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000163945.19	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	KI270733.1:154138	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	KI270733.1:154301	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	KI270733.1:154301	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	KI270733.1:137899	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679809	chr21:39679824	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	KI270733.1:149711	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
UBE2FP2(4834),AC138305.1(128359)	UBE2FP2(4907),AC138305.1(128286)	./.	./.	chr16:63185905	chr16:63185978	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ILKAP	FP236383.3	-/.	+/.	chr2:238203140	chr21:8415558	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000132323.9	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	KI270733.1:149711	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02882	IGL-@-ext	-/.	-/.	chr12:73881443	chr22:22117427	intron	exon	translocation/3'-3'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000251138.7	IGL-.g@-ext	.	.	downstream	downstream	mismatches(1)	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	GL000220.1:136150	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	GL000220.1:136150	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	GL000220.1:136317	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	GL000220.1:136317	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DNMT3A	LINC00486	-/.	+/.	chr2:25252509	chr2:32916556	intron	intron	inversion	0	0	0	3	1606	low	.	.	.	.	.	ENSG00000119772.17	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	GL000220.1:127181	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL355674.1(96164),RORB-AS1(4809)	AL355674.1(96173),RORB-AS1(4800)	./.	./.	chr9:74480742	chr9:74480751	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	GL000220.1:127181	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ILKAP	FP236383.3	-/.	+/.	chr2:238203140	chr21:8420128	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132323.9	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC019131.1	.	+/.	./.	chr4:98936686	KI270733.1:176441	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263923.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
UVSSA	FP236383.11(1894),FP236383.6(562)	+/.	./.	chr4:1346670	chr21:8464692	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UVSSA	FP236383.3	+/.	+/.	chr4:1346670	chr21:8420283	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163945.19	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
ILKAP	FP236383.11(2061),FP236383.6(395)	-/.	./.	chr2:238203140	chr21:8464859	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UVSSA	FP236383.3(931),FP236383.11(6597)	+/.	./.	chr4:1346670	chr21:8455723	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UVSSA	FP671120.4(931),FP671120.10(6777)	+/.	./.	chr4:1346670	chr21:8228577	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886346	chr10:44886355	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ILKAP	FP671120.4(5320),FP671120.10(2388)	-/.	./.	chr2:238203140	chr21:8232966	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PITX2(12895),LINC01438(139385)	AC025039.1(485229),MIR3924(223219)	./.	./.	chr4:110655018	chr10:57081260	intergenic	intergenic	translocation	0	0	0	1	7	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM241B	INSYN1-AS1(36542),AC018943.1(63794)	+/.	./.	chr10:69630891	chr15:73807155	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000171224.9	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MITF	.	+/.	./.	chr3:69888749	KI270733.1:145500	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000187098.17	.	.	.	downstream	upstream	uninteresting_contigs(2)	.	.	.
KDM7A	NBEA	-/.	+/.	chr7:140141509	chr13:35064117	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000006459.11	ENSG00000172915.19	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117444	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GBP1P1	RPL22P13(1294),PDGFRA(6514)	+/.	./.	chr1:89408654	chr4:54222766	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000225492.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GPC3	.	-/.	./.	chrX:133661569	KI270733.1:148208	intron	intergenic	translocation	0	0	0	195	.	low	.	.	.	.	.	ENSG00000147257.15	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
GBP1P1	RPL21P16(45497),AC073587.1(34303)	+/.	./.	chr1:89408654	chr10:120400680	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000225492.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GBP1P1	CR382285.1	+/.	-/.	chr1:89408654	chr21:9989222	intron	intron	translocation/3'-3'	0	0	0	8	1	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000270533.2	.	.	upstream	downstream	mismatches(1)	.	.	.
GBP1P1	TMEM132C	+/.	+/.	chr1:89408654	chr12:128525348	intron	intron	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000181234.9	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419208	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
GBP1P1	CNGA2(72840),MAGEA4-AS1(86287)	+/.	./.	chr1:89408654	chrX:151818144	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000225492.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GBP1P1	NAV2	+/.	+/.	chr1:89408654	chr11:19551927	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000166833.22	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916405	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
GBP1P1	GBP1P1	+/.	+/.	chr1:89408649	chr1:89408666	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000225492.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GBP1P1	BACH2	+/.	-/.	chr1:89408649	chr6:90231990	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000112182.15	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481688	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SFN(3787),GPN2(7889)	SFN(3854),GPN2(7822)	./.	./.	chr1:26868243	chr1:26868310	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LARGE2	XAGE3(6440),FAM156B(16783)	+/+	./-	chr11:45922662	chrX:52874523	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000165905.18	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CCDC187(138),DKFZP434A062(15264)	IQCH	./.	+/.	chr9:136307039	chr15:67307531	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000103599.20	.	.	downstream	upstream	mismatches(1)	.	.	.
LARGE2	AC128716.1(358204),AC128685.1(66400)	+/+	./+	chr11:45922662	chr3:162959996	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000165905.18	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LDB2	LDB2(224),AC106894.1(74373)	-/.	./.	chr4:16898832	chr4:16898902	intergenic	intergenic	duplication	0	0	0	99	83	low	.	.	.	.	.	ENSG00000169744.13	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC02565(107100),RNU6-737P(6308)	LINC02565(107113),RNU6-737P(6295)	./.	./.	chr18:57278294	chr18:57278307	intergenic	intergenic	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	INSIG2	+/.	+/.	chr2:32916556	chr2:118089590	intron	intron	deletion	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000125629.15	.	.	downstream	upstream	mismatches	.	.	.
LINC00620	AL356130.1(30315),LINC01622(19002)	+/.	./.	chr3:13674219	chr6:939321	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000224514.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093510.1(21835),MBLAC2(25705)	AL356130.1(30315),LINC01622(19002)	./.	./.	chr5:90432504	chr6:939321	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MTCO3P30(61596),HMGB3P23(76365)	AL354855.1(21524),SNORD62A(91627)	./.	./.	chr9:31568211	chr9:131394038	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	FP671120.4(5322),FP671120.10(2386)	./.	./.	chr20:20367921	chr21:8232968	intergenic	intergenic	translocation	0	0	0	28	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL354855.1(21524),SNORD62A(91627)	PTPRE	./.	+/.	chr9:131394038	chr10:127960321	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000132334.17	.	.	downstream	upstream	mismatches(1)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479902	intron	intron	translocation/3'-3'	0	0	0	1	855	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXF2(43949),RN7SL352P(67770)	PTPRE	./.	+/.	chr6:1439552	chr10:127960322	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000132334.17	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00620	AL354855.1(21524),SNORD62A(91627)	+/.	./.	chr3:13674219	chr9:131394038	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000224514.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
OXGR1(137590),LINC00456(36431)	XKR3	./.	-/.	chr13:97132320	chr22:16791741	intergenic	intron	translocation	0	0	0	12	2	low	.	.	.	.	.	.	ENSG00000172967.7	.	.	upstream	upstream	mismatches	.	.	.
AC093510.1(21835),MBLAC2(25705)	AL354855.1(21524),SNORD62A(91627)	./.	./.	chr5:90432504	chr9:131394038	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FOXF2(43949),RN7SL352P(67770)	LINC00326(25968),MTCYBP4(17190)	./.	./.	chr6:1439552	chr6:133133378	intergenic	intergenic	inversion	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SEMA3D	SLC2A6(8615),MYMK(26844)	-/.	./.	chr7:85185948	chr9:133487742	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000153993.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXF2(43949),RN7SL352P(67770)	PRIMA1	./.	-/.	chr6:1439552	chr14:93781517	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000175785.13	.	.	downstream	upstream	mismatches(1)	.	.	.
GPC6-AS2	GPC6-AS2	-/.	-/.	chr13:93833105	chr13:93833157	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000224394.1	ENSG00000224394.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00620	FOXF2(43949),RN7SL352P(67770)	+/.	./.	chr3:13674218	chr6:1439552	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000224514.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093510.1(21836),MBLAC2(25704)	FOXF2(43949),RN7SL352P(67770)	./.	./.	chr5:90432505	chr6:1439552	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419120	chr14:106419209	exon	exon	duplication/3'-3'	0	0	0	71	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
POLD1	RPL24P9(51509),AC074035.1(622130)	+/.	./.	chr19:50398625	chrX:4005070	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000062822.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BTF3P9(14009),AL451054.2(33898)	RPL24P9(51509),AC074035.1(622130)	./.	./.	chr1:227448355	chrX:4005070	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3498),ELMOD1(690)	./.	./.	chr11:107590331	chr11:107590401	intergenic	intergenic	duplication/ITD	0	0	0	683	685	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC100860.1(12886),DENND3(43796)	AC100860.1(12918),DENND3(43764)	./.	./.	chr8:141073482	chr8:141073514	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:133391	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AF064860.1	B3GALT5	+/.	+/.	chr21:39679805	chr21:39679875	intron	intergenic	duplication	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000183778.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864052	chr9:106864061	intron	intron	duplication/ITD	0	0	0	87	86	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864046	chr9:106864055	intron	intron	duplication/ITD	0	0	0	87	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(7),low_entropy(6)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10903),AP000345.1(8364)	./.	./.	chr22:23558642	chr22:23558700	intergenic	intergenic	duplication/ITD	0	0	0	140	140	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PAX3	IGF1R	-/.	+/.	chr2:222298765	chr15:98690816	5'UTR	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000135903.20	ENSG00000140443.15	.	.	downstream	upstream	homopolymer(1)	.	.	.
SGCZ	SGCZ	-/.	-/.	chr8:14558575	chr8:14558613	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000185053.14	ENSG00000185053.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL157886.1	AL157886.1	+/.	+/.	chr9:84443328	chr9:84443343	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000285987.1	ENSG00000285987.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396416	chr8:22396513	intron	intron	duplication/ITD	0	0	0	0	71	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
INTS5(477),C11orf98(9038),LBHD1(9038)	INTS5(486),C11orf98(9029),LBHD1(9029)	./.	./.	chr11:62653779	chr11:62653788	intergenic	intergenic	duplication/ITD	0	0	0	105	93	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MKLN1-AS	MGMT	-/-	+/-	chr7:131328231	chr10:129655211	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236753.7	ENSG00000170430.10	.	.	upstream	downstream	mismatches(1)	.	.	.
MKLN1-AS	RDH14	-/-	-/+	chr7:131328234	chr2:18560134	exon	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000236753.7	ENSG00000240857.2	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419204	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RDH14	CUX1	-/.	+/.	chr2:18560134	chr7:101940425	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000240857.2	ENSG00000257923.12	.	.	upstream	upstream	mismatches(1)	.	.	.
AL157778.1	AL157778.1	+/.	+/.	chrX:98484516	chrX:98484573	intron	intron	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	ENSG00000281566.3	ENSG00000281566.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL157778.1	AL157778.1	+/.	+/.	chrX:98484515	chrX:98484574	intron	intron	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	ENSG00000281566.3	ENSG00000281566.3	.	.	upstream	downstream	duplicates(15),low_entropy(7)	.	.	.
LINC00486	.	+/.	./.	chr2:32916568	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132189007	chr7:132189016	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
TBC1D8	TBC1D8	-/.	-/.	chr2:101134165	chr2:101134198	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000204634.13	ENSG00000204634.13	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02620	MIR8062(128201),RN7SL547P(133669)	-/.	./.	chr10:104479810	chr20:7499893	intron	intergenic	translocation	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262585	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
RUFY4(18121),CXCR2(16587)	FP236383.3	./.	+/.	chr2:218108702	chr21:8397833	intergenic	intron	translocation	0	0	0	125	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262484	chr6:42262583	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262577	3'UTR	intron	translocation	0	0	0	0	3473	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262575	3'UTR	intron	translocation	0	0	0	0	3473	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262474	chr6:42262573	intron	intron	duplication/ITD	0	0	0	3576	3473	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(5)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96186),RORB-AS1(4787)	./.	./.	chr9:74480733	chr9:74480764	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DNMBP(72),CPN1(32174)	.	./.	./.	chr10:100010019	GL000220.1:114863	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143172	3'UTR	intron	translocation	0	0	0	0	719	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143166	3'UTR	intron	translocation	0	0	0	0	719	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143164	3'UTR	intron	translocation	0	0	0	0	719	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143162	3'UTR	intron	translocation	0	0	0	0	719	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AC007207.1(79767),CCND2-AS1(50082)	SLC12A5	./.	+/.	chr12:4197899	chr20:46032545	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000124140.14	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143160	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143158	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
YWHAQ	AC025887.2	-/-	+/+	chr2:9630456	chr18:32555379	5'UTR	intron	translocation	0	0	0	4	3	low	.	.	.	.	.	ENSG00000134308.14	ENSG00000285095.2	.	.	upstream	upstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143156	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143154	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143152	intron	intron	duplication/ITD	0	0	0	654	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NR5A1	.	-/-	./+	chr9:124507406	GL000220.1:151308	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143150	intron	intron	duplication/ITD	0	0	0	654	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143148	intron	intron	duplication/ITD	0	0	0	654	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(5)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143146	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
INTS5(467),C11orf98(9048),LBHD1(9048)	INTS5(550),C11orf98(8965),LBHD1(8965)	./.	./.	chr11:62653769	chr11:62653852	intergenic	intergenic	duplication/ITD	0	0	0	105	105	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GDF6	INTS5(550),C11orf98(8965),LBHD1(8965)	-/-	./-	chr8:96144245	chr11:62653852	3'UTR	intergenic	translocation	0	0	0	0	105	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262571	3'UTR	intron	translocation	0	0	0	0	3473	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	INTS5(548),C11orf98(8967),LBHD1(8967)	-/-	./-	chr8:96144245	chr11:62653850	3'UTR	intergenic	translocation	0	0	0	0	105	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM182	FP671120.4(1408),FP671120.10(6300)	+/.	./.	chr2:102840113	chr21:8229054	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170417.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
INTS5(467),C11orf98(9048),LBHD1(9048)	INTS5(546),C11orf98(8969),LBHD1(8969)	./.	./.	chr11:62653769	chr11:62653848	intergenic	intergenic	duplication/ITD	0	0	0	105	105	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
INTS5(467),C11orf98(9048),LBHD1(9048)	INTS5(544),C11orf98(8971),LBHD1(8971)	./.	./.	chr11:62653769	chr11:62653846	intergenic	intergenic	duplication/ITD	0	0	0	105	105	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
GDF6	INTS5(544),C11orf98(8971),LBHD1(8971)	-/-	./-	chr8:96144245	chr11:62653846	3'UTR	intergenic	translocation	0	0	0	0	105	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262599	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
SPINT2	COL18A1	+/.	+/.	chr19:38288614	chr21:45478842	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167642.13	ENSG00000182871.16	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262496	chr6:42262595	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262595	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFA5P10(12686),LINC01768(4671)	.	./.	./.	chr1:109823684	KI270733.1:176193	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262593	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880795	chr19:40880862	intron	intron	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262492	chr6:42262591	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(10)	.	.	.
ADRA2A(6525),AL355863.1(17524)	CDHR5	./.	-/.	chr10:111087432	chr11:618270	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000099834.19	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661298	chr4:152661307	intron	intron	duplication/ITD	0	0	0	99	93	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	low_entropy(3)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262591	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262490	chr6:42262589	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL445675.2(25676),AL603825.1(58526)	ZBTB44	./.	-/.	chr1:242916479	chr11:130314625	intergenic	5'UTR	translocation	0	0	0	3	11	low	.	.	.	.	.	.	ENSG00000196323.14	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262589	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262569	3'UTR	intron	translocation	0	0	0	0	3473	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
STK38(8456),SRSF3(38418)	STK38(8469),SRSF3(38405)	./.	./.	chr6:36555935	chr6:36555948	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262600	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
LY6E(14625),C8orf31(752)	LINC02620	./.	-/.	chr8:143038457	chr10:104479902	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
LY6E(14625),C8orf31(752)	AP005436.1	./.	-/.	chr8:143038457	chr11:88092445	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LY6E(14625),C8orf31(752)	AP005436.1	./.	-/.	chr8:143038457	chr11:88092443	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262554	chr8:143038457	intron	intergenic	translocation	0	0	0	3754	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262556	chr8:143038457	intron	intergenic	translocation	0	0	0	3754	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262558	chr8:143038457	intron	intergenic	translocation	0	0	0	3754	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
AC116359.1(16747),AC094105.1(25725)	FP671120.4(1407),FP671120.10(6301)	./.	./.	chr5:2805296	chr21:8229053	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262562	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262564	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262568	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262572	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
AL713866.2(5657),LINC01680(35763)	FP671120.4	./.	+/.	chr1:191185396	chr21:8214396	intergenic	intron	translocation	0	0	0	0	77	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LY6E(14625),C8orf31(752)	LINC02620	./.	-/.	chr8:143038457	chr10:104479906	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
CFAP58	RUNX1	+/.	-/.	chr10:104396370	chr21:35360185	intron	intron	translocation	0	0	0	217	0	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000159216.19	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262580	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262586	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262588	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262594	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
SFN(3841),GPN2(7835)	SFN(3852),GPN2(7824)	./.	./.	chr1:26868297	chr1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	18	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674873	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
PTPRM	PTPRM	+/.	+/.	chr18:8240754	chr18:8240773	intron	intron	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	ENSG00000173482.17	ENSG00000173482.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:118716	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8400239	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916555	chr21:8219238	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
SLC35E4	.	+/+	./+	chr22:30636545	KI270733.1:176193	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000100036.13	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8402279	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AC093283.1(10501),LINC02122(119553)	AC093283.1(10514),LINC02122(119540)	./.	./.	chr5:73964515	chr5:73964528	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916554	chr21:8259013	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
ARHGEF18	ARHGEF18	+/.	+/.	chr19:7385834	chr19:7385843	intron	intron	duplication/ITD	0	0	0	20	11	low	.	.	.	.	.	ENSG00000104880.19	ENSG00000104880.19	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
ANKRD17	ANKRD17	-/.	-/.	chr4:73171175	chr4:73171222	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000132466.19	ENSG00000132466.19	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
AL731559.1	AL731559.1	+/+	+/+	chr10:12563719	chr10:12563658	exon	exon	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000285994.1	ENSG00000285994.1	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479885	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
KDM4B	.	+/.	./.	chr19:5086526	GL000220.1:116792	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000127663.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GPR132	FP671120.4	-/-	+/+	chr14:105051366	chr21:8217319	CDS	intron	translocation	0	0	0	0	21	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|	.	.	ENSG00000183484.12	ENSG00000278996.1	.	.	upstream	upstream	homopolymer(1)	.	.	.
GPR132	FP236383.3	-/-	+/+	chr14:105051366	chr21:8444589	CDS	intron	translocation	0	0	0	0	19	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|	.	.	ENSG00000183484.12	ENSG00000280441.3	.	.	upstream	upstream	homopolymer(1)	.	.	.
KDM4B	FP236383.3	+/.	+/.	chr19:5086526	chr21:8444590	intron	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000127663.15	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR132	FP236383.3	-/-	+/+	chr14:105051366	chr21:8400354	CDS	intron	translocation	0	0	0	0	19	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|	.	.	ENSG00000183484.12	ENSG00000280441.3	.	.	upstream	upstream	homopolymer(1)	.	.	.
GPR132	ZACN	-/-	+/+	chr14:105051366	chr17:76080197	CDS	intron	translocation	0	0	0	0	2	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|Neurotransmitter-gated_ion-channel_ligand_binding_domain(50%)	.	.	ENSG00000183484.12	ENSG00000186919.13	.	.	upstream	upstream	homopolymer(1)	.	.	.
EHMT2	EHMT2	-/.	-/.	chr6:31897535	chr6:31897549	intron	intron	duplication/ITD	0	0	0	0	3	low	.	.	.	.	.	ENSG00000204371.11	ENSG00000204371.11	.	.	upstream	downstream	small_insert_size	.	.	.
GPR132	.	-/-	./+	chr14:105051366	KI270733.1:178730	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|	.	.	ENSG00000183484.12	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
KDM4B	.	+/.	./.	chr19:5086526	KI270733.1:178731	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000127663.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565294	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
KDM4B	.	+/.	./.	chr19:5086526	KI270733.1:133652	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000127663.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469915	chr7:26469924	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GPR132	.	-/-	./+	chr14:105051366	GL000220.1:160763	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|	.	.	ENSG00000183484.12	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GPR132	.	-/-	./+	chr14:105051366	GL000220.1:116791	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|	.	.	ENSG00000183484.12	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661588	chrX:133661597	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(2)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96200),RORB-AS1(4773)	./.	./.	chr2:234102940	chr9:74480778	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NXF2(27556),NXF2B(6118)	NXF2(27654),NXF2B(6020)	./.	./.	chrX:102354278	chrX:102354376	intergenic	intergenic	duplication/ITD	0	0	0	0	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NXF2(27555),NXF2B(6119)	NXF2(27648),NXF2B(6026)	./.	./.	chrX:102354277	chrX:102354370	intergenic	intergenic	duplication/ITD	0	0	0	0	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262482	chr6:42262581	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257421	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
AL162151.3(74440),AL162151.1(80431)	HAO2	./-	+/+	chr14:99077985	chr1:119392674	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	|FMN-dependent_dehydrogenase(5%)	.	.	.	ENSG00000116882.15	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257415	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PKNOX2	PKNOX2	+/+	+/+	chr11:125411475	chr11:125411464	exon	exon	duplication/ITD	0	0	0	5	11	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|Homeobox_KN_domain(100%)	.	.	ENSG00000165495.16	ENSG00000165495.16	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691779	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396494	chr8:22396592	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683462	chr15:81683471	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683462	chr15:81683471	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683462	chr15:81683471	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683462	chr15:81683471	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC114485.1(331900),AC099567.1(41792)	AC114485.1(331952),AC099567.1(41740)	./.	./.	chr1:102721530	chr1:102721582	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SIM1	LINC02565(107134),RNU6-737P(6274)	-/.	./.	chr6:100458071	chr18:57278328	intron	intergenic	translocation	0	0	0	69	5	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661296	chr4:152661305	intron	intron	duplication/ITD	0	0	0	99	93	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KLHL7-DT	AC025580.2	-/.	+/.	chr7:23104754	chr15:45462165	intron	intron	translocation/5'-5'	0	0	0	3	4	low	.	.	.	.	.	ENSG00000230658.2	ENSG00000259354.5	.	.	upstream	downstream	mismatches(1)	.	.	.
EIF4G1	DLG2	+/.	-/.	chr3:184315186	chr11:85028619	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000114867.22	ENSG00000150672.18	.	.	upstream	upstream	mismatches(1)	.	.	.
PPP4R2(20589),RNU6-557P(2361)	PPP4R2(20604),RNU6-557P(2346)	./.	./.	chr3:73089787	chr3:73089802	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380241	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702318	chr11:3702327	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(4),low_entropy(2),merge_adjacent	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446353	chr12:50446362	intron	intron	duplication/ITD	0	0	0	86	70	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
COL7A1	AC008124.1(1040),ARID2(891)	-/.	./.	chr3:48575795	chr12:45728815	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000114270.18	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702320	chr11:3702329	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
AL353611.1(1425),AL353611.2(48326)	AHSA1	./.	+/.	chr9:134944632	chr14:77460777	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000100591.8	.	.	upstream	upstream	mismatches(1)	.	.	.
HCG18	SYT6	-/-	-/-	chr6:30326898	chr1:114153810	exon	5'UTR	translocation	0	0	0	0	1	low	.	.	|C2_domain(100%)	.	.	ENSG00000231074.9	ENSG00000134207.17	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNQ1	AC023034.1	+/.	+/.	chr11:2733824	chr15:81565363	intron	intron	translocation	0	0	0	0	199	low	.	.	.	.	.	ENSG00000053918.18	ENSG00000259594.6	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNQ1	AC060809.1	+/.	+/.	chr11:2733824	chr15:81565363	intron	intron	translocation	0	0	0	0	199	low	.	.	.	.	.	ENSG00000053918.18	ENSG00000259543.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AAK1	AC060809.1	-/.	+/.	chr2:69640055	chr15:81565363	intron	intron	translocation/5'-5'	0	0	0	0	199	low	.	.	.	.	.	ENSG00000115977.21	ENSG00000259543.1	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481699	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LY6E(14617),C8orf31(760)	AP005436.1	./.	-/.	chr8:143038449	chr11:88092441	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
AC097480.2(49409),RN7SL101P(60944)	NELL1	./.	+/.	chr4:28650254	chr11:20787518	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000165973.19	.	.	downstream	upstream	mismatches(1)	.	.	.
AL591468.1(1336),LINC02528(38167)	NELL1	./.	+/.	chr6:137904912	chr11:20787518	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000165973.19	.	.	downstream	upstream	mismatches(1)	.	.	.
CREBRF	UBE2W	+/.	-/.	chr5:173056549	chr8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164463.12	ENSG00000104343.21	.	.	downstream	upstream	mismatches(1)	.	.	.
DNTT	AC005357.2	+/.	+/.	chr10:96333569	chr19:27961842	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000107447.8	ENSG00000267623.3	.	.	downstream	upstream	mismatches(1)	.	.	.
DNTT	AC006504.5	+/.	+/.	chr10:96333569	chr19:27961842	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000107447.8	ENSG00000267575.7	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481634	chr17:39481711	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PTPRG	GALNT9	+/.	-/.	chr3:61562918	chr12:132216845	intron	intron	translocation/3'-3'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000144724.20	ENSG00000182870.13	.	.	upstream	downstream	mismatches(1)	.	.	.
PTPRG	RBM19	+/.	-/.	chr3:61562918	chr12:113929382	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000144724.20	ENSG00000122965.11	.	.	upstream	upstream	mismatches(1)	.	.	.
PTPRG	MYLK3	+/.	-/.	chr3:61562918	chr16:46733831	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000144724.20	ENSG00000140795.13	.	.	upstream	downstream	mismatches(1)	.	.	.
SRRM4	SRRM4	+/.	+/.	chr12:119137604	chr12:119137613	intron	intron	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	ENSG00000139767.10	ENSG00000139767.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125712	chr3:120125755	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
CRYM	CRYM	-/.	-/.	chr16:21281091	chr16:21281135	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000103316.12	ENSG00000103316.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FBP1	UACA	-/.	-/.	chr9:94621628	chr15:70763368	intron	CDS	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000165140.11	ENSG00000137831.15	.	.	downstream	downstream	mismatches(1)	.	.	.
FBP1	MDK	-/.	+/.	chr9:94621628	chr11:46381514	intron	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000165140.11	ENSG00000110492.16	.	.	downstream	downstream	mismatches(1)	.	.	.
FBP1	AL133167.1(9858),TUNAR(48)	-/.	./.	chr9:94621628	chr14:95876344	intron	intergenic	translocation	0	0	0	14	3	low	.	.	.	.	.	ENSG00000165140.11	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KDM7A	FBP1	-/.	-/.	chr7:140176256	chr9:94621628	intron	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000006459.11	ENSG00000165140.11	.	.	downstream	downstream	mismatches(1)	.	.	.
FBP1	YTHDF1	-/.	-/.	chr9:94621628	chr20:63215922	intron	5'UTR	translocation/3'-3'	0	0	0	14	3	low	.	.	.	.	.	ENSG00000165140.11	ENSG00000149658.18	.	.	downstream	downstream	mismatches(1)	.	.	.
FBP1	TMPO-AS1	-/.	-/.	chr9:94621628	chr12:98516165	intron	exon	translocation/3'-3'	0	0	0	14	3	low	.	.	.	.	.	ENSG00000165140.11	ENSG00000257167.2	.	.	downstream	downstream	mismatches(1)	.	.	.
H1-2(15015),HFE(15796)	ATP10A	./.	-/.	chr6:26071485	chr15:25719261	intergenic	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000206190.12	.	.	downstream	downstream	mismatches(1)	.	.	.
DRD5P2	FBP1	-/-	-/-	chr1:144276690	chr9:94621628	exon	intron	translocation	0	0	0	0	14	low	.	.	|Fructose-1-6-bisphosphatase__C-terminal_domain(100%),Fructose-1-6-bisphosphatase__N-terminal_domain(75%)	.	.	ENSG00000175658.4	ENSG00000165140.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AC027612.2	FBP1	-/.	-/.	chr2:91686307	chr9:94621628	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000230572.5	ENSG00000165140.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96188),RORB-AS1(4785)	./.	./.	chr2:234102940	chr9:74480766	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
H1-10-AS1	RCAN2	+/+	-/+	chr3:129317233	chr6:46451324	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000206417.8	ENSG00000172348.15	.	.	downstream	upstream	mismatches(1)	.	.	.
TPCN1	.	+/.	./.	chr12:113295640	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000186815.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RNU1-154P(705),AC239860.2(27400)	RNU1-154P(757),AC239860.2(27348)	./.	./.	chr1:145432398	chr1:145432450	intergenic	intergenic	duplication/ITD	0	0	0	180	188	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	ANAPC1P4(6943),PLGLB2(3039)	+/.	./.	chr2:32916556	chr2:87745048	intron	intergenic	inversion	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117374	chr10:113117383	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117388	chr10:113117397	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
WNT7A(15414),VN1R20P(31328)	KIAA1549L	./.	+/.	chr3:13895485	chr11:33557935	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000110427.17	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01344	MAML3	-/.	-/.	chr1:182244065	chr4:139886779	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000228918.4	ENSG00000196782.12	.	.	upstream	downstream	mismatches(1)	.	.	.
WNT7A(15414),VN1R20P(31328)	STPG2(33766),AC019077.1(74446)	./.	./.	chr3:13895485	chr4:98177242	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KBTBD11	KIAA1549L	+/.	+/.	chr8:1973995	chr11:33557935	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000176595.4	ENSG00000110427.17	.	.	upstream	downstream	mismatches(1)	.	.	.
KBTBD11-OT1	KIAA1549L	+/.	+/.	chr8:1973995	chr11:33557935	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000253696.2	ENSG00000110427.17	.	.	upstream	downstream	mismatches(1)	.	.	.
STPG2(33766),AC019077.1(74446)	KBTBD11	./.	+/.	chr4:98177242	chr8:1973995	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000176595.4	.	.	upstream	upstream	mismatches(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674409	chr7:35674418	intron	intron	duplication/ITD	0	0	0	59	0	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
STPG2(33766),AC019077.1(74446)	KBTBD11-OT1	./.	+/.	chr4:98177242	chr8:1973995	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000253696.2	.	.	upstream	upstream	mismatches(1)	.	.	.
STPG2(33766),AC019077.1(74446)	AC019257.1	./.	-/.	chr4:98177242	chr8:1973995	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000253764.3	.	.	upstream	upstream	mismatches(1)	.	.	.
STPG2(33766),AC019077.1(74446)	PRDM14	./.	-/.	chr4:98177242	chr8:70069949	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000147596.4	.	.	upstream	downstream	mismatches(1)	.	.	.
C10orf90	C10orf90	-/.	-/.	chr10:126649035	chr10:126649044	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000154493.19	ENSG00000154493.19	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916400	GL000220.1:160648	intron	intergenic	translocation	0	0	0	275	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LY6E(14631),C8orf31(746)	LINC02620	./.	-/.	chr8:143038463	chr10:104479904	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
AC110609.1	AC009803.1	-/.	-/.	chr4:128553015	chr12:115594149	intron	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000273077.1	ENSG00000257407.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI2	MAGI2	-/.	-/.	chr7:78083379	chr7:78083402	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000187391.22	ENSG00000187391.22	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916605	chr10:127190668	intron	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
MAGI2	TMCC3(113771),KRT19P2(69819)	-/.	./.	chr7:78083379	chr12:94764328	intron	intergenic	translocation	0	0	0	11	21	low	.	.	.	.	.	ENSG00000187391.22	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	AC009035.1(259591),C16orf82(78210)	+/.	./.	chr11:47233105	chr16:26988717	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	.	+/.	./.	chr11:47233105	GL000220.1:155459	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DDB2	.	+/.	./.	chr11:47233105	KI270733.1:173418	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DDB2	FP671120.4	+/.	+/.	chr11:47233105	chr21:8212035	intron	intron	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000134574.12	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640172	chr2:198640183	intron	intron	duplication/ITD	0	0	0	68	65	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
EML1	EML1	+/.	+/.	chr14:99796195	chr14:99796204	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(4)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51918),RBMY2WP(38074)	./.	./.	chrY:22724736	chrY:22724777	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046186	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(3)	.	.	.
RNU6-521P(183182),AC007274.3(50628)	RNU6-521P(183191),AC007274.3(50619)	./.	./.	chrY:7606340	chrY:7606349	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
AC106870.3	AC106870.3	-/.	-/.	chr2:29852824	chr2:29852871	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000288553.1	ENSG00000288553.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC106870.3	ALK	-/.	-/.	chr2:29852824	chr2:29852871	intron	intron	duplication	0	0	0	1	1	low	.	.	.	.	.	ENSG00000288553.1	ENSG00000171094.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
ALK	ALK	-/.	-/.	chr2:29852824	chr2:29852871	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000171094.18	ENSG00000171094.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNAJC11(7034),LINC01672(15679)	DNAJC11(7077),LINC01672(15636)	./.	./.	chr1:6708958	chr1:6709001	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LDLRAD3	LDLRAD3	+/.	+/.	chr11:36140985	chr11:36141036	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000179241.13	ENSG00000179241.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
KSR2	BMP7	-/.	-/.	chr12:117682287	chr20:57263898	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171435.14	ENSG00000101144.13	.	.	downstream	downstream	mismatches(1)	.	.	.
KSR2	OCA2	-/.	-/.	chr12:117682287	chr15:27774285	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000171435.14	ENSG00000104044.16	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02034(6478),AC084035.1(24269),TPRA1(24269)	BMP7	./.	-/.	chr3:127546963	chr20:57263898	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101144.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AC005771.1(88489),AC007423.1(60850)	BMP7	./.	-/.	chr17:70717754	chr20:57263898	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101144.13	.	.	downstream	downstream	mismatches(1)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236827	chr15:33236836	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(3)	.	.	.
WDR62(1882),OVOL3(4161)	.	./.	./.	chr19:36106990	GL000220.1:114506	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236829	chr15:33236838	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL357513.1(66904),TBC1D32(167115)	AL357513.1(66949),TBC1D32(167070)	./.	./.	chr6:120912379	chr6:120912424	intergenic	intergenic	duplication/ITD	0	0	0	30	30	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL357513.1(66903),TBC1D32(167116)	AL357513.1(66948),TBC1D32(167071)	./.	./.	chr6:120912378	chr6:120912423	intergenic	intergenic	duplication/ITD	0	0	0	30	30	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL357513.1(66904),TBC1D32(167115)	AL357513.1(66947),TBC1D32(167072)	./.	./.	chr6:120912379	chr6:120912422	intergenic	intergenic	duplication/ITD	0	0	0	30	30	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79732),AC016903.1(10552)	./.	./.	chr2:204459485	chr2:204459524	intergenic	intergenic	duplication/ITD	0	0	0	60	60	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
UTRN	.	+/.	./.	chr6:144823828	KI270733.1:175797	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
UTRN	.	+/.	./.	chr6:144823828	KI270733.1:130718	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	DLG2	./.	-/.	chr4:136763598	chr11:85484192	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000150672.18	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	5_8S_rRNA(1690),FP236383.3(122020)	./.	./.	chr4:136763598	chr21:8258623	intergenic	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CGREF1	CGREF1	-/.	-/.	chr2:27116867	chr2:27116924	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000138028.16	ENSG00000138028.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
UTRN	5_8S_rRNA(1692),FP236383.3(122018)	+/.	./.	chr6:144823828	chr21:8258625	intron	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	upstream	mismatches(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	ERBB3	./+	+/+	chr3:31295858	chr12:56080195	intergenic	5'UTR/splice-site	translocation	0	0	0	0	0	low	.	.	|Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%)	.	.	.	ENSG00000065361.16	.	.	downstream	upstream	mismatches(1)	.	.	.
UTRN	FP236383.3	+/.	+/.	chr6:144823828	chr21:8397440	intron	intron	translocation/3'-3'	0	0	0	0	76	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	FP671120.4	./.	+/.	chr4:136763598	chr21:8214400	intergenic	intron	translocation	0	0	0	0	77	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
UTRN	FP671120.4	+/.	+/.	chr6:144823828	chr21:8214402	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
UTRN	DLG2	+/.	-/.	chr6:144823828	chr11:85484194	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000150672.18	.	.	upstream	upstream	mismatches(1)	.	.	.
UTRN	FP236383.3	+/.	+/.	chr6:144823828	chr21:8441660	intron	intron	translocation/3'-3'	0	0	0	0	76	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	chr7:112751479	chr21:8441661	intron	intron	translocation/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	GL000220.1:157835	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	NMD3(65767),EEF1GP4(5614)	+/.	./.	chr2:32916556	chr3:161319299	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
CDH8	NLGN4X	-/.	-/.	chr16:61831042	chrX:6227403	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000150394.14	ENSG00000146938.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	.	./.	./.	chr4:136763598	GL000220.1:113860	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DDB2	.	+/.	./.	chr11:47233105	KI270733.1:128340	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
UTRN	.	+/.	./.	chr6:144823828	GL000220.1:113862	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL157778.1	AL157778.1	+/.	+/.	chrX:98484515	chrX:98484570	intron	intron	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	ENSG00000281566.3	ENSG00000281566.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	GL000220.1:113863	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DNMBP(72),CPN1(32174)	FP671120.4	./.	+/.	chr10:100010019	chr21:8215398	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002463.1	DLG2	+/.	-/.	chr7:112751479	chr11:85484195	intron	intron	translocation	0	0	0	22	62	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000150672.18	.	.	upstream	upstream	mismatches(1)	.	.	.
SFN(3791),GPN2(7885)	SFN(3851),GPN2(7825)	./.	./.	chr1:26868247	chr1:26868307	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
SFN(3787),GPN2(7889)	SFN(3850),GPN2(7826)	./.	./.	chr1:26868243	chr1:26868306	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CMAHP	GPAT4	-/.	+/.	chr6:25226640	chr8:41616186	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	ENSG00000158669.11	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM228B	CMAHP	+/.	-/.	chr2:24140908	chr6:25226641	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000219626.9	ENSG00000168405.17	.	.	downstream	downstream	mismatches(1)	.	.	.
CMAHP	SOCS7(11409),ARHGAP23(2278)	-/.	./.	chr6:25226641	chr17:38417002	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000168405.17	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CMAHP	SEL1L2	-/.	-/.	chr6:25226641	chr20:13853270	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	ENSG00000101251.13	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093843.1(184462),AC011233.1(122436)	CMAHP	./.	-/.	chr2:221040335	chr6:25226640	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000168405.17	.	.	downstream	downstream	mismatches(1)	.	.	.
MTCO3P28(6320),AC104689.1(148922)	ADCY8(38401),AC087341.1(50451)	./.	./.	chr4:64618208	chr8:131079310	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	GTF2IRD1P1	./.	-/.	chr2:240393940	chr7:66824572	intergenic	intron	translocation	0	0	0	16	1	low	.	.	.	.	.	.	ENSG00000230583.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MTCO3P28(6320),AC104689.1(148922)	RTKN2(20116),LINC02621(561)	./.	./.	chr4:64618208	chr10:62288960	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPRD2	CMAHP	+/+	-/-	chr1:150364748	chr6:25226640	CDS	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000163125.15	ENSG00000168405.17	.	.	downstream	downstream	mismatches(1)	.	.	.
CNIH4	CMAHP	+/.	-/.	chr1:224359642	chr6:25226641	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143771.12	ENSG00000168405.17	.	.	upstream	downstream	mismatches(1)	.	.	.
FAM149A	FAM149A	+/.	+/.	chr4:186136938	chr4:186137019	intron	intron	duplication/ITD	0	0	0	0	7	low	.	.	.	.	.	ENSG00000109794.13	ENSG00000109794.13	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
5S_rRNA(11367),AC006453.1(10166)	FBP1	./.	-/.	chr2:89612047	chr9:94621628	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000165140.11	.	.	upstream	downstream	mismatches(1)	.	.	.
CMAHP	HTR7	-/.	-/.	chr6:25226641	chr10:90830734	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000168405.17	ENSG00000148680.16	.	.	downstream	downstream	mismatches(1)	.	.	.
STAC	CMAHP	+/.	-/.	chr3:36392730	chr6:25226640	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144681.11	ENSG00000168405.17	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396370	chr10:104396379	intron	intron	duplication/ITD	0	0	0	217	0	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	AC108477.2(3279),AC108477.1(26266)	+/.	./.	chr2:32916556	chr4:183735849	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
GRM7	GRM7	+/.	+/.	chr3:7291494	chr3:7291505	intron	intron	duplication/ITD	0	0	0	27	27	low	.	.	.	.	.	ENSG00000196277.16	ENSG00000196277.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL732372.2	ARHGEF10	-/.	+/.	chr1:417884	chr8:1946622	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000237094.12	ENSG00000104728.16	.	.	upstream	upstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902255	chr4:94902263	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150825	chr15:66150870	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RNU6-521P(183179),AC007274.3(50631)	RNU6-521P(183191),AC007274.3(50619)	./.	./.	chrY:7606337	chrY:7606349	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470843	chr10:3470937	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EML1	EML1	+/.	+/.	chr14:99796192	chr14:99796202	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481630	chr17:39481708	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNU6-551P(110281),PAPSS1(44775)	.	./.	./.	chr4:107545501	KI270733.1:133665	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886338	chr10:44886353	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(7),merge_adjacent	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824765	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	low_entropy(2),merge_adjacent	.	.	.
NGB	NGB	-/.	-/.	chr14:77269681	chr14:77269779	intron	intron	duplication/ITD	0	0	0	20	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DIS3L2	DIS3L2	+/.	+/.	chr2:232270855	chr2:232270920	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000144535.20	ENSG00000144535.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
CYTH4(13527),ELFN2(10715)	CYTH4(13541),ELFN2(10701)	./.	./.	chr22:37328868	chr22:37328882	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
PLPP4	PLPP4	+/.	+/.	chr10:120574169	chr10:120574184	intron	intron	duplication/ITD	0	0	0	65	65	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000203805.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02305(19150),AL356807.1(52249)	LINC02305(19165),AL356807.1(52234)	./.	./.	chr14:83934527	chr14:83934542	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC00871	AC006504.5	+/.	+/.	chr14:46105933	chr19:27961843	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258700.6	ENSG00000267575.7	.	.	upstream	upstream	mismatches(1)	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581686	chr5:93581695	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(208),AC106894.1(74389)	./.	./.	chr4:16898832	chr4:16898886	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
PCAT14(10846),AP000345.1(8421)	PCAT14(10919),AP000345.1(8348)	./.	./.	chr22:23558643	chr22:23558716	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),merge_adjacent	.	.	.
GABRA2	GABRA2	-/-	-/-	chr4:46389796	chr4:46389862	5'UTR	5'UTR	duplication/ITD	0	0	0	13	13	low	.	.	|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)	.	.	ENSG00000151834.16	ENSG00000151834.16	.	.	upstream	downstream	duplicates(4),low_entropy(7)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565305	chr15:81565314	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
BTG3	AC121342.1(14791),MAGEB18(230008)	-/.	./.	chr21:17607232	chrX:25908335	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000154640.15	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM132B(44060),AC005252.2(102231)	TMEM132B(44124),AC005252.2(102167)	./.	./.	chr12:125706437	chr12:125706501	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565305	chr15:81565314	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
AC099671.1	ADAMTS15(2749),AP004371.1(65253)	-/.	./.	chr1:79990402	chr11:130479390	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285409.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CEP162(5453),LINC01611(187932)	CEP162(5462),LINC01611(187923)	./.	./.	chr6:84233096	chr6:84233105	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MT-RNR2	.	+/.	./.	chrM:1794	GL000220.1:116336	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ASTN2	.	-/.	./.	chr9:117110116	KI270733.1:133191	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000148219.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ZACN	KDM4B	+/.	+/.	chr17:76080198	chr19:5086526	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000186919.13	ENSG00000127663.15	.	.	upstream	downstream	mismatches(1)	.	.	.
ASTN2	.	-/.	./.	chr9:117110116	GL000220.1:160308	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000148219.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ASTN2	FP236383.3	-/.	+/.	chr9:117110116	chr21:8444134	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000148219.18	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
ASTN2	FP236383.3	-/.	+/.	chr9:117110116	chr21:8399899	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000148219.18	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	chr21:8444134	chrM:1794	intron	exon	translocation/3'-3'	0	0	0	7	.	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683456	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ASTN2	FP671120.4	-/.	+/.	chr9:117110116	chr21:8216865	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000148219.18	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618112	KI270733.1:133191	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	chr3:96618112	chr21:8444134	5'UTR	intron	translocation/3'-3'	0	0	0	11	7	low	.	.	.	.	.	ENSG00000269028.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	.	-/.	./.	chr5:80650924	KI270733.1:178270	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DNAH11	LINC01432(143327),AL035258.1(2573)	+/.	./.	chr7:21595876	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000105877.18	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	.	-/.	./.	chr5:80650924	KI270733.1:133191	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916410	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
A2MP1	AC126544.2(3620),AC126544.1(622)	-/.	./.	chr12:9236103	chr17:45591999	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000256069.7	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	chr21:8399899	chrM:1794	intron	exon	translocation/3'-3'	0	0	0	7	.	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442050	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
DHFR	.	-/.	./.	chr5:80650924	GL000220.1:160308	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DHFR	.	-/.	./.	chr5:80650924	GL000220.1:116336	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	chr5:80650924	chr21:8444134	intron	intron	translocation/3'-3'	0	0	0	12	7	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	AL136520.1	./.	+/.	chr3:31295858	chr14:57630889	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258856.2	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	chr5:80650924	chr21:8399899	intron	intron	translocation/3'-3'	0	0	0	12	7	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
IGSF1	.	-/.	./.	chrX:131338235	KI270733.1:133665	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000147255.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785689	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
LINC01320	.	+/.	./.	chr2:33767495	KI270733.1:178270	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01320	.	+/.	./.	chr2:33767495	KI270733.1:133191	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01320	.	+/.	./.	chr2:33767495	GL000220.1:160308	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
BBS9	AC025881.1(129815),CARS1P2(342927)	+/.	./.	chr7:33585948	chr8:114448726	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000122507.21	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491165	chr11:105491231	intron	intron	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01320	.	+/.	./.	chr2:33767495	GL000220.1:116336	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01320	FP236383.3	+/.	+/.	chr2:33767495	chr21:8444134	intron	intron	translocation	0	0	0	11	7	low	.	.	.	.	.	ENSG00000228262.10	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	chr21:8216865	chrM:1794	intron	exon	translocation/3'-3'	0	0	0	5	.	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP007216.1(6325),AP007216.2(4319)	FP236383.3	./.	+/.	chr11:69917319	chr21:8399951	intergenic	intron	translocation	0	0	0	0	729	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AP007216.1(6233),AP007216.2(4411)	.	./.	./.	chr11:69917227	GL000220.1:116388	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP007216.1(6233),AP007216.2(4411)	FP236383.3	./.	+/.	chr11:69917227	chr21:8444186	intergenic	intron	translocation	0	0	0	0	765	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683464	chr15:81683473	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1)	.	.	.
BTF3L4P3(8114),AL356234.2(105512)	.	./.	./.	chr6:137552486	GL000220.1:160360	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
EFNB1(318124),PJA1(567)	.	./.	./.	chrX:69160284	GL000220.1:160360	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
EFNB1(318124),PJA1(567)	.	./.	./.	chrX:69160284	GL000220.1:116388	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	EFNB1(318124),PJA1(567)	+/.	./.	chr21:8444186	chrX:69160284	intron	intergenic	translocation	0	0	0	765	0	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4527HG	.	+/.	./.	chr18:47458659	GL000220.1:160360	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000267761.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MIR4527HG	.	+/.	./.	chr18:47458659	GL000220.1:116388	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000267761.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
BTF3L4P3(8114),AL356234.2(105512)	FP236383.3	./.	+/.	chr6:137552486	chr21:8444186	intergenic	intron	translocation	0	0	0	0	765	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGAP6	.	-/.	./.	chrX:11159509	KI270733.1:178329	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000047648.23	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
PAXBP1(81),C21orf62-AS1(227)	PAXBP1(90),C21orf62-AS1(218)	./.	./.	chr21:32771873	chr21:32771882	intergenic	intergenic	duplication/ITD	0	0	0	760	721	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ARHGAP6	.	-/.	./.	chrX:11159509	GL000220.1:160367	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000047648.23	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620578	chr5:110620593	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.3	./.	+/.	chr20:20367921	chr21:8420285	intergenic	intron	translocation	0	0	0	28	0	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP6	.	-/.	./.	chrX:11159509	GL000220.1:116395	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000047648.23	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419209	chr14:106419120	exon	exon	duplication/ITD	0	0	0	86	71	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
LINC01111	VDR	+/.	-/.	chr8:76448607	chr12:47857799	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000254300.1	ENSG00000111424.12	.	.	downstream	downstream	homopolymer(1)	.	.	.
AP007216.1(6325),AP007216.2(4319)	.	./.	./.	chr11:69917319	GL000220.1:160360	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626664	chrX:18626675	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916555	chr21:8259013	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AP007216.1(6325),AP007216.2(4319)	.	./.	./.	chr11:69917319	GL000220.1:116388	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SLC25A48	.	+/.	./.	chr5:135832435	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000145832.14	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
BTF3L4P3(8114),AL356234.2(105512)	FP236383.3	./.	+/.	chr6:137552486	chr21:8399951	intergenic	intron	translocation	0	0	0	0	729	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916415	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
RNU6-1228P(154660),AL158073.1(49052)	SLC38A4	./.	-/.	chr9:75352837	chr12:46830705	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000139209.16	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6-1228P(154660),AL158073.1(49052)	AC008014.1	./.	+/.	chr9:75352837	chr12:46830705	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000257261.6	.	.	downstream	downstream	mismatches(1)	.	.	.
DPY19L2P3(48017),WIPF3(15875)	AC008014.1	./.	+/.	chr7:29790611	chr12:46830705	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000257261.6	.	.	upstream	downstream	mismatches(1)	.	.	.
EYA4	RNU6-1228P(154660),AL158073.1(49052)	+/.	./.	chr6:133271699	chr9:75352837	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112319.19	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL355674.1(96148),RORB-AS1(4825)	AL355674.1(96209),RORB-AS1(4764)	./.	./.	chr9:74480726	chr9:74480787	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
AC095041.1(88388),RNA5SP173(31022)	AC095041.1(88399),RNA5SP173(31011)	./.	./.	chr4:178375673	chr4:178375684	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11817411	GL000220.1:116389	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CSAG3	CSAG3	+/.	+/.	chrX:152758797	chrX:152758876	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000268916.6	ENSG00000268916.6	.	.	upstream	downstream	duplicates(8),low_entropy(3)	.	.	.
PCAT1	PCAT1	+/.	+/.	chr8:126750632	chr8:126750645	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000253438.4	ENSG00000253438.4	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	chr8:88881403	chr8:88881465	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000253553.7	ENSG00000253553.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02199(27009),AC091895.1(55343)	LINC02199(27018),AC091895.1(55334)	./.	./.	chr5:8925061	chr5:8925070	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAGI1	MAGI1	-/.	-/.	chr3:65812432	chr3:65812469	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000151276.23	ENSG00000151276.23	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
KIAA2012	RAPGEF1	+/.	-/.	chr2:202083779	chr9:131578988	intron	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329.14	ENSG00000107263.18	.	.	downstream	downstream	mismatches(1)	.	.	.
WWOX	WWOX	+/.	+/.	chr16:78539980	chr16:78540021	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000186153.17	ENSG00000186153.17	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC098817.1(272813),AC138623.1(79569)	AC098817.1(272826),AC138623.1(79556)	./.	./.	chr2:83139321	chr2:83139334	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RTN4RL1	RTN4RL1	-/.	-/.	chr17:2005723	chr17:2005765	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000185924.7	ENSG00000185924.7	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125713	chr3:120125726	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
HDC	HDC	-/.	-/.	chr15:50254735	chr15:50254775	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000140287.11	ENSG00000140287.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312080	chr11:22312091	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
TLCD3B	TACC2	-/-	+/+	chr16:30031184	chr10:122215486	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(100%)	.	.	ENSG00000149926.13	ENSG00000138162.19	.	.	upstream	upstream	homopolymer(1)	.	.	.
MTR	AC078778.1	+/+	+/+	chr1:236893463	chr12:54304542	exon	intron	translocation	0	0	0	4	0	low	.	.	B12_binding_domain(100%),Homocysteine_S-methyltransferase(100%),Pterin_binding_enzyme(100%),Vitamin_B12_dependent_methionine_synthase__activation_domain(36%)|	.	.	ENSG00000116984.15	ENSG00000258344.1	.	.	downstream	upstream	mismatches(1)	.	.	.
DIPK1B	TACC2	+/.	+/.	chr9:136717886	chr10:122215486	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165716.11	ENSG00000138162.19	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565359	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AC245100.1	TCF7L2	+/.	+/.	chr1:148328317	chr10:113117374	intron	intron	translocation/3'-3'	0	0	0	0	266	low	.	.	.	.	.	ENSG00000224481.3	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565359	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565359	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC021146.5	FP236383.3	-/.	+/.	chr4:68986258	chr21:8441654	intron	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	ENSG00000249735.1	ENSG00000280441.3	.	.	upstream	upstream	mismatches(2)	.	.	.
AC021146.5	.	-/.	./.	chr4:68986258	GL000220.1:157828	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000249735.1	.	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
AC021146.5	.	-/.	./.	chr4:68986258	KI270733.1:175791	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000249735.1	.	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
AC021146.5	.	-/.	./.	chr4:68986258	KI270733.1:130712	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000249735.1	.	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	GL000008.2:81875	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	KI270733.1:133665	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC021146.5	DLG2	-/.	-/.	chr4:68986258	chr11:85484188	intron	intron	translocation/5'-5'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000249735.1	ENSG00000150672.18	.	.	upstream	upstream	mismatches(2)	.	.	.
ALDH1L2	FXNP1(22749),NRXN3(87346)	-/.	./.	chr12:105046194	chr14:78083027	intron	intergenic	translocation	0	0	0	1664	671	low	.	.	.	.	.	ENSG00000136010.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DTNBP1(65875),ARPC3P5(205849)	FXNP1(22757),NRXN3(87338)	./.	./.	chr6:15728933	chr14:78083035	intergenic	intergenic	translocation	0	0	0	654	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BMPR1B	FXNP1(22749),NRXN3(87346)	+/.	./.	chr4:94902250	chr14:78083027	intron	intergenic	translocation	0	0	0	1847	671	low	.	.	.	.	.	ENSG00000138696.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396387	chr10:104396396	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FXNP1(22747),NRXN3(87348)	AC016694.1(51928),RBMY2WP(38064)	./.	./.	chr14:78083025	chrY:22724787	intergenic	intergenic	translocation	0	0	0	671	1708	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22675),NRXN3(87420)	FXNP1(22774),NRXN3(87321)	./.	./.	chr14:78082953	chr14:78083052	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FXNP1(22751),NRXN3(87344)	RNU6-521P(183176),AC007274.3(50634)	./.	./.	chr14:78083029	chrY:7606334	intergenic	intergenic	translocation	0	0	0	671	1172	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638065	chr7:116638076	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
U6(246395),HSP90AB2P(35608)	FXNP1(22757),NRXN3(87338)	./.	./.	chr4:13297806	chr14:78083035	intergenic	intergenic	translocation	0	0	0	672	671	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117368	chr10:113117379	intron	intron	duplication/ITD	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TCF7L2	AC090506.2(91661),AC016382.1(82735)	+/.	./.	chr10:113117368	chr18:30872085	intron	intergenic	translocation	0	0	0	266	10	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	LINC01082(3097),LINC01081(18603)	+/.	./.	chr10:113117366	chr16:86202817	intron	intergenic	translocation	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	PPIP5K1	+/.	-/.	chr10:113117367	chr15:43537707	intron	intron	translocation	0	0	0	266	5	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000168781.22	.	.	upstream	upstream	mismatches(1)	.	.	.
CD8B2(113135),AC108868.2(113135),EEF1A1P12(39899)	CD8B2(113148),AC108868.2(113148),EEF1A1P12(39886)	./.	./.	chr2:106657432	chr2:106657445	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TCF7L2	LINC01919(494606),AC090666.1(17537)	+/.	./.	chr10:113117369	chr18:54124596	intron	intergenic	translocation	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PLXNA4	TCF7L2	-/.	+/.	chr7:132189031	chr10:113117379	intron	intron	translocation	0	0	0	211	266	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	SLFN13	+/.	-/.	chr2:32916501	chr17:35448412	intron	intron	translocation	0	0	0	1644	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000154760.14	.	.	downstream	downstream	mismatches	.	.	.
TCF7L2	ALDH1L2	+/.	-/.	chr10:113117387	chr12:105046194	intron	intron	translocation/3'-3'	0	0	0	266	1664	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000136010.14	.	.	upstream	downstream	mismatches(1)	.	.	.
BMPR1B	TCF7L2	+/.	+/.	chr4:94902250	chr10:113117387	intron	intron	translocation/3'-3'	0	0	0	1847	266	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	AC016694.1(51928),RBMY2WP(38064)	+/.	./.	chr10:113117389	chrY:22724787	intron	intergenic	translocation	0	0	0	266	1708	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	RNU6-521P(183176),AC007274.3(50634)	+/.	./.	chr10:113117385	chrY:7606334	intron	intergenic	translocation	0	0	0	266	1172	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TUBB4BP5(193075),ANXA5(22904)	NAV2-AS4	./.	-/.	chr4:121645042	chr11:19511706	intergenic	exon	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000254622.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MED6P1(8598),AL353149.1(200708)	TCF7L2	./.	+/.	chr10:88058421	chr10:113117371	intergenic	intron	inversion	0	0	0	0	266	low	.	.	.	.	.	.	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AL160254.1	FXNP1(22775),NRXN3(87320)	+/.	./.	chr13:67141434	chr14:78083053	intron	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	ENSG00000285588.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PCDH9	FXNP1(22775),NRXN3(87320)	-/.	./.	chr13:67141434	chr14:78083053	intron	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	ENSG00000184226.15	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS3AP5(351683),AL358787.2(243384)	FXNP1(22775),NRXN3(87320)	./.	./.	chr10:84912946	chr14:78083053	intergenic	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL161616.1(177795),RXFP2(78032)	FXNP1(22775),NRXN3(87320)	./.	./.	chr13:31661494	chr14:78083053	intergenic	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TMTC1(247517),AC023511.3(54066)	FXNP1(22775),NRXN3(87320)	./.	./.	chr12:30032276	chr14:78083053	intergenic	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PLXNA4	FXNP1(22757),NRXN3(87338)	-/.	./.	chr7:132189031	chr14:78083035	intron	intergenic	translocation	0	0	0	211	671	low	.	.	.	.	.	ENSG00000221866.9	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22749),NRXN3(87346)	EML1	./.	+/.	chr14:78083027	chr14:99796187	intergenic	intron	deletion	0	0	0	671	1790	low	.	.	.	.	.	.	ENSG00000066629.18	.	.	downstream	upstream	mismatches(1)	.	.	.
GRM7	AC025881.1(129815),CARS1P2(342927)	+/.	./.	chr3:7300456	chr8:114448726	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196277.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312080	chr11:22312137	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	small_insert_size	.	.	.
AP2B1	AP2B1	+/.	+/.	chr17:35583510	chr17:35583555	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000006125.18	ENSG00000006125.18	.	.	upstream	downstream	small_insert_size	.	.	.
NUP98	HDC	-/.	-/.	chr11:3702330	chr15:50254777	intron	intron	translocation	0	0	0	437	7	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000140287.11	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262597	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
FREM2	FREM2	+/.	+/.	chr13:38813458	chr13:38813518	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000150893.11	ENSG00000150893.11	.	.	upstream	downstream	small_insert_size	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702325	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(11),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916568	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
UNC5A	UNC5A	+/.	+/.	chr5:176834659	chr5:176834712	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000113763.12	ENSG00000113763.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	DMBT1	+/.	+/.	chr10:104396370	chr10:122634471	intron	intron	inversion/3'-3'	0	0	0	217	0	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000187908.20	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC36	LRRC36	+/.	+/.	chr16:67331061	chr16:67331076	intron	intron	duplication/ITD	0	0	0	25	0	low	.	.	.	.	.	ENSG00000159708.18	ENSG00000159708.18	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
GAPDHP75(251856),RNA5SP73(281001)	GAPDHP75(251905),RNA5SP73(280952)	./.	./.	chr1:189385148	chr1:189385197	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021201	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	GL000220.1:136150	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TTLL5	TTLL5	+/.	+/.	chr14:75773920	chr14:75773995	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000119685.20	ENSG00000119685.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
TTLL5	TTLL5	+/.	+/.	chr14:75773920	chr14:75773989	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000119685.20	ENSG00000119685.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
CARD16	LINC02458	-/.	-/.	chr11:105077873	chr12:89130233	intron	intron	translocation/3'-3'	0	0	0	13	5	low	.	.	.	.	.	ENSG00000204397.9	ENSG00000246363.3	.	.	downstream	downstream	mismatches(1)	.	.	.
CARD16	CARD16	-/.	-/.	chr11:105077814	chr11:105077889	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000204397.9	ENSG00000204397.9	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02458	FRY	-/.	+/.	chr12:89130233	chr13:31867352	intron	intron	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000073910.23	.	.	downstream	downstream	mismatches(1)	.	.	.
FRY	FRY	+/.	+/.	chr13:31867306	chr13:31867362	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000073910.23	ENSG00000073910.23	.	.	upstream	downstream	low_entropy(1)	.	.	.
WDR19	WDR19	+/.	+/.	chr4:39211930	chr4:39211945	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000157796.18	ENSG00000157796.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565294	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113393	chr1:109113468	intron	intron	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CFAP77	ZC2HC1C	+/.	+/.	chr9:132457328	chr14:75068465	intron	intron	translocation/5'-5'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000188523.9	ENSG00000119703.15	.	.	downstream	downstream	mismatches(1)	.	.	.
CACNA1E	NLGN4X	+/.	-/.	chr1:181644873	chrX:6227403	intron	intron	translocation/3'-3'	0	0	0	3	6	low	.	.	.	.	.	ENSG00000198216.12	ENSG00000146938.16	.	.	upstream	downstream	mismatches(1)	.	.	.
UVSSA	FP236383.3	+/.	+/.	chr4:1346670	chr21:8420128	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163945.19	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113388	chr1:109113454	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113388	chr1:109113448	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
PDE4DIP	DMD	+/.	-/.	chr1:148810794	chrX:31138656	intron	intron	translocation	0	0	0	14	95	low	.	.	.	.	.	ENSG00000178104.19	ENSG00000198947.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AC245297.1	DMD	-/.	-/.	chr1:149319443	chrX:31138656	intron	intron	translocation	0	0	0	14	95	low	.	.	.	.	.	ENSG00000215861.6	ENSG00000198947.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51915),RBMY2WP(38077)	./.	./.	chrY:22724736	chrY:22724774	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
PDCD6IPP2(913),AC174469.1(21747)	UNKL	./.	-/.	chr15:28859920	chr16:1379273	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000059145.19	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
UTRN(24892),AL023283.1(418619)	UNKL	./.	-/.	chr6:144877926	chr16:1379273	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000059145.19	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GFRA3(34),CDC25C(10614)	PDCD6IPP2(913),AC174469.1(21747)	./.	./.	chr5:138274655	chr15:28859920	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GFRA3(34),CDC25C(10614)	UTRN(24892),AL023283.1(418619)	./.	./.	chr5:138274655	chr6:144877926	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916407	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
NDC1	PDCD6IPP2(913),AC174469.1(21747)	-/.	./.	chr1:53838113	chr15:28859920	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000058804.12	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL359924.1	UTRN(24892),AL023283.1(418619)	+/.	./.	chr1:237883665	chr6:144877926	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000237250.3	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GEMIN8(106770),UBE2E4P(107719)	GEMIN8(106837),UBE2E4P(107652)	./.	./.	chrX:14136663	chrX:14136730	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
THBS4	PDCD6IPP2(913),AC174469.1(21747)	+/.	./.	chr5:80035293	chr15:28859920	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113296.14	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NDC1	UTRN(24892),AL023283.1(418619)	-/.	./.	chr1:53838113	chr6:144877926	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000058804.12	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CRIM1	INPP5D	+/.	+/.	chr2:36530986	chr2:233117636	intron	intron	duplication	0	0	0	0	21	low	.	.	.	.	.	ENSG00000150938.10	ENSG00000168918.14	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
ARHGAP6	.	-/.	./.	chrX:11159509	KI270733.1:133250	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000047648.23	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GNGT1	GNGT1	+/.	+/.	chr7:93597394	chr7:93597403	intron	intron	duplication/ITD	0	0	0	15	12	low	.	.	.	.	.	ENSG00000127928.13	ENSG00000127928.13	.	.	upstream	downstream	low_entropy(2)	.	.	.
DMD	DMD	-/.	-/.	chrX:31943873	chrX:31943888	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC005482.1(33846),AC092648.1(38754)	AC005482.1(33893),AC092648.1(38707)	./.	./.	chr7:67730875	chr7:67730922	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(30),low_entropy(1)	.	.	.
AC105180.2(10848),ZFAT(76453)	ASPG	./.	+/.	chr8:134401335	chr14:104109850	intergenic	intron	translocation	0	0	0	120	0	low	.	.	.	.	.	.	ENSG00000166183.16	.	.	downstream	upstream	mismatches(1)	.	.	.
RNF8(33275),CMTR1(5210)	RNF8(33284),CMTR1(5201)	./.	./.	chr6:37428009	chr6:37428018	intergenic	intergenic	duplication/ITD	0	0	0	11	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(2)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106231139	chr14:106231148	exon	exon	duplication/5'-5'	0	0	0	8	7	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106231139	chr14:106231148	exon	exon	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106231146	chr14:106231155	exon	exon	duplication/3'-3'	0	0	0	8	7	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106231146	chr14:106231155	exon	exon	duplication/5'-5'	0	0	0	8	7	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
RUFY4(18122),CXCR2(16586)	TEDC1	./.	+/.	chr2:218108703	chr14:105493961	intergenic	intron	translocation	0	0	0	125	0	low	.	.	.	.	.	.	ENSG00000185347.18	.	.	downstream	downstream	homopolymer(1)	.	.	.
RUFY4(18122),CXCR2(16586)	HNRNPA3P8(184084),AC108740.1(40763)	./.	./.	chr2:218108703	chr3:80401318	intergenic	intergenic	translocation	0	0	0	125	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC093627.22	NELL1	-/.	+/.	chr7:117610	chr11:20857320	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000165973.19	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916554	chr21:8400266	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
SLC25A12	AC093627.22	-/.	-/.	chr2:171912427	chr7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115840.14	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
DLG2	MT-RNR2	-/.	+/.	chr11:85484197	chrM:1791	intron	exon	translocation	0	0	0	62	.	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000210082.2	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077779	chrX:11077788	intron	intron	duplication/ITD	0	0	0	28	24	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC093627.22	RNU4-83P(49966),RPS26P6(13945)	-/.	./.	chr7:117610	chr8:100881826	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	NDUFA4L2(1285),STAC3(1453)	-/.	./.	chr7:117610	chr12:57242000	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02613	AC093627.22	-/.	-/.	chr2:38515935	chr7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231367.6	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM217B(5296),CDH26(4447)	FAM217B(5360),CDH26(4383)	./.	./.	chr20:59953976	chr20:59954040	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC010451.1	AC093627.22	-/.	-/.	chr5:4990798	chr7:117612	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250481.2	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01331(79559),ENC1(10871)	AC093627.22	./.	-/.	chr5:74616535	chr7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287883.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116337.3	AC093627.22	-/.	-/.	chr5:75020587	chr7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249856.1	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
HOXC6	HOXC6	+/.	+/.	chr12:54013995	chr12:54014058	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000197757.8	ENSG00000197757.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
PCAT14(10850),AP000345.1(8417)	PCAT14(10919),AP000345.1(8348)	./.	./.	chr22:23558647	chr22:23558716	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
UST	UST	+/.	+/.	chr6:149034835	chr6:149034850	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000111962.8	ENSG00000111962.8	.	.	upstream	downstream	low_entropy(4)	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620578	chr5:110620591	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	duplicates(6),low_entropy(7)	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880790	chr19:40880862	intron	intron	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398685	chr7:54398700	intron	intron	duplication/ITD	0	0	0	19	0	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
HSD17B13	CHST15	-/.	-/.	chr4:87305788	chr10:124091739	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000170509.12	ENSG00000182022.18	.	.	downstream	upstream	mismatches(1)	.	.	.
NYAP2	LRRK1	+/.	+/.	chr2:225513530	chr15:101027902	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144460.12	ENSG00000154237.13	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01503	FP236383.3	+/.	+/.	chr9:129355193	chr21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	450	low	.	.	.	.	.	ENSG00000233901.6	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	GALNT17	-/.	+/.	chr6:42262466	chr7:71231770	intron	intron	translocation/5'-5'	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000185274.12	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479809	chr10:104479826	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GALNT17	LINC02620	+/.	-/.	chr7:71231769	chr10:104479809	intron	intron	translocation/5'-5'	0	0	0	0	984	low	.	.	.	.	.	ENSG00000185274.12	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22687),NRXN3(87408)	FXNP1(22776),NRXN3(87319)	./.	./.	chr14:78082965	chr14:78083054	intergenic	intergenic	duplication/ITD	0	0	0	673	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
TMPRSS5	FXNP1(22774),NRXN3(87321)	-/.	./.	chr11:113699287	chr14:78083052	intron	intergenic	translocation	0	0	0	6	640	low	.	.	.	.	.	ENSG00000166682.13	.	.	.	downstream	downstream	low_entropy	.	.	.
TCF7L2	FXNP1(22774),NRXN3(87321)	+/.	./.	chr10:113117449	chr14:78083052	intron	intergenic	translocation	0	0	0	254	640	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	downstream	downstream	low_entropy	.	.	.
FXNP1(22776),NRXN3(87319)	TEX28P1	./.	-/.	chr14:78083054	chrX:154202858	intergenic	intron	translocation	0	0	0	640	8	low	.	.	.	.	.	.	ENSG00000274962.1	.	.	downstream	downstream	low_entropy	.	.	.
DNAH14	FXNP1(22776),NRXN3(87319)	+/.	./.	chr1:225078844	chr14:78083054	intron	intergenic	translocation	0	0	0	27	640	low	.	.	.	.	.	ENSG00000185842.15	.	.	.	downstream	downstream	low_entropy	.	.	.
TMPRSS5	FXNP1(22776),NRXN3(87319)	-/.	./.	chr11:113699287	chr14:78083054	intron	intergenic	translocation	0	0	0	6	640	low	.	.	.	.	.	ENSG00000166682.13	.	.	.	downstream	downstream	low_entropy	.	.	.
AC006458.1(129546),AGMO(2120)	AC006458.1(129602),AGMO(2064)	./.	./.	chr7:15198197	chr7:15198253	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:118716	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8400239	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
REST	.	+/.	./.	chr4:56908633	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000084093.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MAD1L1	AL353611.2(21963),OLFM1(57605)	-/.	./.	chr7:1966819	chr9:135017817	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000002822.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8219238	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8446508	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AL359837.1(13525),LARP7P1(33090)	.	./.	./.	chr1:203367176	KI270733.1:146408	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC245100.1	UBE2FP2(4907),AC138305.1(128286)	+/.	./.	chr1:148328317	chr16:63185978	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000224481.3	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL359837.1(13525),LARP7P1(33090)	.	./.	./.	chr1:203367176	KI270733.1:145957	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AL359837.1(13525),LARP7P1(33090)	.	./.	./.	chr1:203367176	KI270733.1:145501	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
FXNP1(22672),NRXN3(87423)	FXNP1(22685),NRXN3(87410)	./.	./.	chr14:78082950	chr14:78082963	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL359837.1(13525),LARP7P1(33090)	.	./.	./.	chr1:203367176	GL000220.1:133486	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AL359837.1(13525),LARP7P1(33090)	FP236383.3(1403),FP236383.11(6125)	./.	./.	chr1:203367176	chr21:8456195	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9792),AC108063.2(20063)	./.	./.	chr4:16094104	chr4:16094170	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
CRYBB2	CRYBB2	+/.	+/.	chr22:25218683	chr22:25218781	intron	intron	duplication/ITD	0	0	0	0	19	low	.	.	.	.	.	ENSG00000244752.3	ENSG00000244752.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193781	chr12:16193845	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3521),ELMOD1(667)	./.	./.	chr11:107590331	chr11:107590424	intergenic	intergenic	duplication/ITD	0	0	0	683	646	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KSR1P1(30973),IGKV1OR10-1(4817)	KSR1P1(31019),IGKV1OR10-1(4771)	./.	./.	chr10:42180522	chr10:42180568	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01208	LINC01208	-/.	-/.	chr3:176468326	chr3:176468341	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000223715.3	ENSG00000223715.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479818	chr10:104479827	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CHI3L2	CHI3L2	+/.	+/.	chr1:111215995	chr1:111216040	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000064886.14	ENSG00000064886.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC16A14	SLC16A14	-/.	-/.	chr2:230067535	chr2:230067572	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000163053.11	ENSG00000163053.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARPP21(35591),AC104308.1(41779)	ARPP21(35602),AC104308.1(41768)	./.	./.	chr3:35830087	chr3:35830098	intergenic	intergenic	duplication/ITD	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GLIS3	AL137071.1	-/.	+/.	chr9:3876635	chr9:3876650	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000107249.23	ENSG00000236724.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARPP21(35593),AC104308.1(41777)	ARPP21(35602),AC104308.1(41768)	./.	./.	chr3:35830089	chr3:35830098	intergenic	intergenic	duplication/ITD	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491181	chr11:105491190	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(15),low_entropy(4)	.	.	.
AC021146.5	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	chr4:68986258	chr21:8258619	intron	intergenic	translocation	0	0	0	0	77	low	.	.	.	.	.	ENSG00000249735.1	.	.	.	upstream	upstream	mismatches(2)	.	.	.
OSMR-AS1	OSMR-AS1	-/.	-/.	chr5:38824456	chr5:38824548	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000249740.3	ENSG00000249740.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
CARM1P1	CARM1P1	-/.	-/.	chr9:3009494	chr9:3009563	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000227835.8	ENSG00000227835.8	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:142129573	chr2:142129631	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
AC084759.3	NRP1	+/+	-/-	chr15:53910829	chr10:33334709	exon	5'UTR	translocation	0	0	0	1	15	low	.	.	|C-terminal_domain_of_neuropilin_glycoprotein(100%),CUB_domain(100%),F5/8_type_C_domain(100%),MAM_domain__meprin/A5/mu(100%)	.	.	ENSG00000280362.1	ENSG00000099250.18	.	.	downstream	downstream	mismatches(1)	.	.	.
PLPP4	AC023034.1	+/.	+/.	chr10:120574169	chr15:81565320	intron	intron	translocation	0	0	0	65	191	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000259594.6	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565298	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	downstream	low_entropy	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380239	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3855),GPN2(7821)	./.	./.	chr1:26868243	chr1:26868311	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
SEMA5B(2025),PDIA5(36395)	SEMA5B(2034),PDIA5(36386)	./.	./.	chr3:123030630	chr3:123030639	intergenic	intergenic	duplication/ITD	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8)	.	.	.
AC093627.22	AC091806.1	-/.	+/.	chr7:117612	chrX:40289160	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000236393.2	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC00499	TRERF1	+/.	-/.	chr4:138402531	chr6:42262578	intron	intron	translocation/3'-3'	0	0	0	0	3473	low	.	.	.	.	.	ENSG00000251372.6	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU6-521P(183177),AC007274.3(50633)	RNU6-521P(183190),AC007274.3(50620)	./.	./.	chrY:7606335	chrY:7606348	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),merge_adjacent	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916407	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC02552	.	-/.	./.	chr11:104549832	GL000220.1:158265	intron	intergenic	translocation	0	0	0	16	.	low	.	.	.	.	.	ENSG00000256422.6	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481696	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469904	chr7:26469945	intron	intron	duplication/ITD	0	0	0	48	48	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
MFF-DT	AL355309.1(99987),RAC1P4(16222)	-/-	./-	chr2:227268528	chrX:137425036	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MYL10(432),CUX1(186176)	PRKG1	./.	+/.	chr7:101629728	chr10:51323911	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185532.20	.	.	upstream	upstream	mismatches(1)	.	.	.
SEMA5B(2019),PDIA5(36401)	SEMA5B(2032),PDIA5(36388)	./.	./.	chr3:123030624	chr3:123030637	intergenic	intergenic	duplication/ITD	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
LRAT	AC112200.1(5273),ANKRD33B(1982)	+/.	./.	chr4:154635484	chr5:10562088	intron	intergenic	translocation	0	0	0	3	6	low	.	.	.	.	.	ENSG00000121207.12	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
KCNMB2-AS1	AL050402.1(52845),AL133456.1(50934)	-/.	./.	chr3:178655096	chr22:27512905	intron	intergenic	translocation	0	0	0	13	1	low	.	.	.	.	.	ENSG00000237978.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DHRS9	LINC02742	+/.	+/.	chr2:169079984	chr11:29053269	intron	intron	translocation	0	0	0	35	3	low	.	.	.	.	.	ENSG00000073737.17	ENSG00000249867.6	.	.	downstream	upstream	mismatches	.	.	.
AC026765.3	FP236383.3	+/.	+/.	chr12:114698741	chr21:8397917	intron	intron	translocation	0	0	0	0	64	low	.	.	.	.	.	ENSG00000257817.2	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
SHANK2	SLC7A10(11380),AC008738.6(46748)	-/.	./.	chr11:71128697	chr19:33237230	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000162105.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	KI270733.1:176182	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
AC008738.4	SLC7A10(11380),AC008738.6(46748)	+/.	./.	chr19:33217934	chr19:33237230	intron	intergenic	deletion/read-through	0	0	0	2	0	low	.	.	.	.	.	ENSG00000267714.2	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916415	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	KI270733.1:131103	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
KCNQ3	KCNQ3	-/.	-/.	chr8:132230434	chr8:132230448	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000184156.17	ENSG00000184156.17	.	.	upstream	downstream	duplicates(15),low_entropy(4)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396492	chr8:22396590	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683462	chr15:81683471	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
MFF-DT	.	-/-	./+	chr2:227268528	GL000220.1:114247	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275767	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275769	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(24),low_entropy(11)	.	.	.
XRCC6P2(77068),MAMLD1(51458)	XRCC6P2(77100),MAMLD1(51426)	./.	./.	chrX:150309964	chrX:150309996	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886344	chr10:44886353	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275771	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458052	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275775	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
RBFOX3(64112),AC233701.1(17772)	FP236383.3	./.	+/.	chr17:79580260	chr21:8392570	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
IL1RAPL1	GPC3	+/.	-/.	chrX:29695596	chrX:133661563	intron	intron	inversion	0	0	0	0	195	low	.	.	.	.	.	ENSG00000169306.10	ENSG00000147257.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51928),RBMY2WP(38064)	./.	./.	chrY:22724736	chrY:22724787	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(444),low_entropy(30)	.	.	.
FP236383.3	.	+/.	./.	chr21:8444189	GL000220.1:160360	intron	intergenic	translocation	0	0	0	765	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL353595.1	BNC2(4455),AL162725.2(42213)	+/.	./.	chr9:11645401	chr9:16875298	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285784.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626676	chrX:18626685	intron	intron	duplication/ITD	0	0	0	84	83	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL358053.1(206650),AL591644.1(221031)	ASS1P13(36081),AP000766.1(98521)	./.	./.	chr9:1756753	chr11:107213611	intergenic	intergenic	translocation	0	0	0	40	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LDB2(155),AC106894.1(74442)	LDB2(224),AC106894.1(74373)	./.	./.	chr4:16898833	chr4:16898902	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824761	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916507	chr21:8259013	intron	intergenic	translocation	0	0	0	1644	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AL161658.1(2264),INSM1(183)	.	./.	./.	chr20:20367921	GL000220.1:136152	intergenic	intergenic	translocation	0	0	0	28	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392823	chr1:90392832	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	.	+/.	./.	chr21:8444186	KI270733.1:133246	intron	intergenic	translocation	0	0	0	765	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
C16orf95	RUFY4(18122),CXCR2(16586)	-/-	./-	chr16:87317154	chr2:218108703	CDS	intergenic	translocation	0	0	0	0	125	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	duplicates(4),mismatches(2)	.	.	.
AC093627.22	AC022748.2	-/.	+/.	chr7:117610	chr15:78672957	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000261303.6	.	.	upstream	downstream	mismatches(2)	.	.	.
AC093627.22	AP002371.1(8127),AP003072.4(53697)	-/.	./.	chr7:117610	chr11:93080158	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC093627.22	CDK14	-/.	+/.	chr7:117610	chr7:90766754	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000058091.17	.	.	upstream	upstream	mismatches(2)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702308	chr11:3702366	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
NRIP3	AC084759.3(17),AC084759.2(31980)	-/-	./-	chr11:9003961	chr15:53914729	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	FP236383.3	./.	+/.	chr3:95431525	chr21:8397434	intergenic	intron	translocation	0	0	0	5	76	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581671	chr5:93581684	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
NRIP3	AC084759.3	-/-	+/-	chr11:9003961	chr15:53910826	5'UTR	exon	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000175352.11	ENSG00000280362.1	.	.	upstream	downstream	mismatches(1)	.	.	.
NRIP3	SUSD5(52303),FBXL2(5912)	-/-	./+	chr11:9003961	chr3:33271113	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442310	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	11	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
PPP1R3D	RAB11FIP5	-/-	-/-	chr20:59936654	chr2:73112263	intergenic	intron	translocation	0	0	0	4	0	low	.	.	Carbohydrate/starch-binding_module_(family_21)(100%)|C2_domain(3%),FIP_domain_(100%)	.	.	ENSG00000132825.7	ENSG00000135631.17	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092506.1(281321),AL591888.1(490407)	AC092506.1(281330),AL591888.1(490398)	./.	./.	chr1:104507999	chr1:104508008	intergenic	intergenic	duplication/ITD	0	0	0	57	56	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
UNCX	FOXA3(2578),IRF2BP1(7233)	+/+	./+	chr7:1236840	chr19:45876375	CDS	intergenic	translocation	0	0	0	0	5	low	.	.	Homeodomain(100%)|	.	.	ENSG00000164853.9	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC117522.1(114766),AC010486.1(67188)	LINC02620	./.	-/.	chr5:85352840	chr10:104479899	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
PLCB4	FP671120.4	+/.	+/.	chr20:9262355	chr21:8216986	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000101333.18	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	chr5:177876243	chr15:45462586	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000170089.15	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441079	chr16:51441070	exon	exon	duplication/ITD	0	0	0	22	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	duplicates(4),low_entropy(1)	.	.	.
CCSER1	CXXC4	+/.	-/.	chr4:90819173	chr4:104491476	intron	CDS	inversion	0	0	0	1	2	low	.	.	.	.	.	ENSG00000184305.15	ENSG00000168772.11	.	.	downstream	downstream	mismatches(1)	.	.	.
TCF15(3584),SRXN1(32633)	.	./.	./.	chr20:613982	KI270733.1:131120	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
TTC7A	CCSER1	+/.	+/.	chr2:46941038	chr4:90819174	intron	intron	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000068724.17	ENSG00000184305.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093898.1	.	+/.	./.	chr4:18644544	KI270733.1:133312	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000286046.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
PARP8	PARP8	+/.	+/.	chr5:50707628	chr5:50707639	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000151883.19	ENSG00000151883.19	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LNP1(22670),TMEM45A(13630)	LNP1(22699),TMEM45A(13601)	./.	./.	chr3:100478989	chr3:100479018	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AIFM2(165),TYSND1(4882)	AIFM2(178),TYSND1(4869)	./.	./.	chr10:70133099	chr10:70133112	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
AC093898.1	.	+/.	./.	chr4:18644544	GL000220.1:116457	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000286046.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	STAU2(1178),UBE2W(31211)	+/.	./.	chr2:32916556	chr8:73748886	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
RN7SKP48(34876),AC097488.1(110458)	.	./.	./.	chr4:85135699	GL000220.1:160429	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TRERF1	APAF1	-/.	+/.	chr6:42262467	chr12:98689463	intron	intron	translocation/5'-5'	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000120868.14	.	.	upstream	downstream	mismatches(1)	.	.	.
BCL11B(22954),AL132819.1(29648)	BCL11B(23008),AL132819.1(29594)	./.	./.	chr14:99295151	chr14:99295205	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SCX	AL121790.1(4100),FOXA1(6327)	+/+	./+	chr8:144267104	chr14:37583225	CDS	intergenic	translocation	0	0	0	2	0	low	.	.	Helix-loop-helix_DNA-binding_domain(100%)|	.	.	ENSG00000260428.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNMB2-AS1	KCNMB2	-/.	+/.	chr3:178655098	chr3:178655107	intron	intron	duplication/5'-5'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000197584.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
C1QTNF12	FAM27E3(5196),FAM27B(1316)	-/.	./.	chr1:1245901	chr9:67724374	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092266.1(330442),LSINCT5(120126)	.	./.	./.	chr5:2592465	GL000220.1:114258	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
COMETT	AC060809.1	-/.	+/.	chr7:116638131	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259543.1	.	.	downstream	upstream	low_entropy	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AC010451.1	./.	-/.	chr1:188690471	chr5:4990797	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000250481.2	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLCB4	.	+/.	./.	chr20:9262355	KI270733.1:178391	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000101333.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SYT13(18330),LINC02696(50700)	AC007207.1(79770),CCND2-AS1(50079)	./.	./.	chr11:45304671	chr12:4197902	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PLCB4	.	+/.	./.	chr20:9262355	KI270733.1:133312	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000101333.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TTLL7(35),AC104454.1(16680)	.	./.	./.	chr1:83999185	KI270733.1:131108	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
PLCB4	.	+/.	./.	chr20:9262355	GL000220.1:160429	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000101333.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864060	chr9:106864069	intron	intron	duplication/ITD	0	0	0	87	86	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
ACTG1P23(47423),EI24P1(42049)	ACTG1P23(47473),EI24P1(41999)	./.	./.	chr3:176025993	chr3:176026043	intergenic	intergenic	duplication/ITD	0	0	0	56	56	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
SLC25A48	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	chr5:135832435	chr21:8259021	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000145832.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736254	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
ATP2B2	NCMAP	-/-	+/-	chr3:10449762	chr1:24566513	5'UTR	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000157087.20	ENSG00000184454.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MYO5B	MYO5B	-/.	-/.	chr18:50122589	chr18:50122679	intron	intron	duplication/ITD	0	0	0	0	23	low	.	.	.	.	.	ENSG00000167306.20	ENSG00000167306.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
TGM3(8190),TGM6(31632)	TGM3(8201),TGM6(31621)	./.	./.	chr20:2349269	chr20:2349280	intergenic	intergenic	duplication/ITD	0	0	0	15	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC092666.1(100092),AC006008.1(57447)	LINC01432(143326),AL035258.1(2574)	./.	./.	chr7:150176747	chr20:22217980	intergenic	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL136979.1	LINC01168(15974),ADGRA1(78601)	-/.	./.	chr9:677771	chr10:132992328	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227914.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HDAC5	FP671120.4	-/-	+/+	chr17:44078034	chr21:8214792	3'UTR	intron	translocation	0	0	0	0	2358	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
EXOC3	LINC00486	+/+	+/-	chr5:443254	chr2:32916597	5'UTR	intron	translocation/5'-5'	0	0	0	3	46	low	.	.	.	.	.	ENSG00000180104.16	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
PAXBP1(60),C21orf62-AS1(248)	PAXBP1(69),C21orf62-AS1(239)	./.	./.	chr21:32771852	chr21:32771861	intergenic	intergenic	duplication/ITD	0	0	0	721	276	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CASC8	.	-/.	./.	chr8:127481284	GL000220.1:116388	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000246228.6	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565313	chr15:81565322	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
FXNP1(22674),NRXN3(87421)	FXNP1(22773),NRXN3(87322)	./.	./.	chr14:78082952	chr14:78083051	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FO393413.1(58409),RNU7-65P(12597)	FO393413.1(58418),RNU7-65P(12588)	./.	./.	chr6:49332203	chr6:49332212	intergenic	intergenic	duplication/ITD	0	0	0	13	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8403957	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC02608(44056),PPP2R5A(2377)	MMP2-AS1	./.	-/.	chr1:212283033	chr16:55433378	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000260135.7	.	.	downstream	downstream	mismatches(1)	.	.	.
ATP2B1	ATP2B1	-/.	-/.	chr12:89658599	chr12:89658614	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000070961.16	ENSG00000070961.16	.	.	upstream	downstream	low_entropy(2)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785667	chr2:101785766	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PHKA1(8392),U3(3411)	PHKA1(8405),U3(3398)	./.	./.	chrX:72722711	chrX:72722724	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MT-RNR2	.	+/.	./.	chrM:1794	KI270733.1:178270	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734408	chr6:46734491	intron	intron	duplication/ITD	0	0	0	49	49	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	duplicates(11),low_entropy(12)	.	.	.
AL442163.1(45645),YWHAQP1(58078)	AL442163.1(45688),YWHAQP1(58035)	./.	./.	chr14:42749300	chr14:42749343	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
NECTIN4(8108),KLHDC9(695)	NECTIN4(8179),KLHDC9(624)	./.	./.	chr1:161097666	chr1:161097737	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02458	LINC02458	-/.	-/.	chr12:89130183	chr12:89130233	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000246363.3	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
FBXO28	GSE1	+/.	+/.	chr1:224122600	chr16:85627990	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000143756.12	ENSG00000131149.19	.	.	upstream	upstream	mismatches(1)	.	.	.
TRAPPC9	ENPP7(35197),CBX2(732)	-/.	./.	chr8:140110809	chr17:79777416	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167632.18	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM105(3174),AC027601.5(5335)	SERBP1P4(95975),PCDH11X(121689)	./.	./.	chr17:81333848	chrX:91657572	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	LINC01020	./.	+/.	chr1:188690471	chr5:4990797	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000215231.8	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PSAT1P1(16040),AC113145.1(60225)	AC016820.1(173235),ZMIZ1-AS1(73071)	./.	./.	chr8:49757361	chr10:78870257	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RADIL	LINC02685(7047),AC068858.1(23191)	-/.	./.	chr7:4819762	chr11:44985075	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157927.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RABGAP1L	RABGAP1L	+/.	+/.	chr1:174280049	chr1:174280092	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000152061.23	ENSG00000152061.23	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LINC00871	AC005357.2	+/.	+/.	chr14:46105933	chr19:27961843	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258700.6	ENSG00000267623.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC087863.2	AC087863.2	-/.	-/.	chr12:118855033	chr12:118855042	intron	intron	duplication/ITD	0	0	0	39	39	low	.	.	.	.	.	ENSG00000256149.1	ENSG00000256149.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TFB1M	AL355309.1(99987),RAC1P4(16222)	-/.	./.	chr6:155280046	chrX:137425036	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000029639.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022215.2	AC124947.1	-/.	-/.	chr3:141268207	chr12:93375497	intron	intron	translocation	0	0	0	9	30	low	.	.	.	.	.	ENSG00000287155.1	ENSG00000257252.6	.	.	downstream	upstream	mismatches(1)	.	.	.
ZCCHC14	AC134878.2(1476),DUX4L16(90416)	-/.	./.	chr16:87420184	chrY:11216502	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	SUSD5(52299),FBXL2(5916)	./.	./.	chr1:188690471	chr3:33271109	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AC084759.3(21),AC084759.2(31976)	./.	./.	chr1:188690471	chr15:53914733	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC6A14	SLC6A14	+/.	+/.	chrX:116445453	chrX:116445508	intron	intron	duplication/ITD	0	0	0	687	687	low	.	.	.	.	.	ENSG00000268104.3	ENSG00000268104.3	.	.	upstream	downstream	duplicates(324),low_entropy(19)	.	.	.
ARHGEF6	ARHGEF6	-/.	-/.	chrX:136729001	chrX:136729016	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000129675.16	ENSG00000129675.16	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AC025366.1(57829),AP005357.1(76640)	./.	./.	chr1:188690471	chr8:110690223	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009803.1	AC009803.1	-/.	-/.	chr12:115594095	chr12:115594149	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000257407.1	ENSG00000257407.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
IL17REL	FOXD2-AS1(2545),FOXD2(858)	-/-	./-	chr22:49996701	chr1:47437186	3'UTR	intergenic	translocation	0	0	0	0	8	low	.	.	Interleukin-17_receptor_extracellular_region(100%)|	.	.	ENSG00000188263.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DTNBP1(65879),ARPC3P5(205845)	MIR4300HG	./.	-/.	chr6:15728937	chr11:82143174	intergenic	intron	translocation	0	0	0	654	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01818(55822),RND3(55913)	MYL10(432),CUX1(186176)	./.	./.	chr2:150412282	chr7:101629728	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	CHRNB4	./.	-/.	chr1:188690471	chr15:78672958	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000117971.12	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGH-@-ext	TCF7L2	+/+	+/-	chr14:106419215	chr10:113117389	exon	intron	translocation/5'-5'	0	0	0	86	197	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
NXF2(6013),NXF2B(27661)	NXF2(6024),NXF2B(27650)	./.	./.	chrX:102332735	chrX:102332746	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SEMA5B(2023),PDIA5(36397)	SEMA5B(2032),PDIA5(36388)	./.	./.	chr3:123030628	chr3:123030637	intergenic	intergenic	duplication/ITD	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565353	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	CDK14	./.	+/.	chr1:188690471	chr7:90766753	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000058091.17	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280013	chr1:148280111	intron	intron	duplication/ITD	0	0	0	133	132	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PPP3CC	FP236383.3	+/.	+/.	chr8:22486063	chr21:8420286	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120910.15	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
PSAT1P1(16040),AC113145.1(60225)	AC136297.1(13056),LINC02689(235)	./.	./.	chr8:49757361	chr11:1350124	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02330	LIN52(32940),VSX2(5274)	-/-	./-	chr14:87635507	chr14:74234175	exon	intergenic	deletion	0	0	0	0	8	low	.	.	.	.	.	ENSG00000258770.1	.	.	.	upstream	downstream	mismatches(2)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	chr3:96618115	chr21:8214405	5'UTR	intron	translocation/3'-3'	0	0	0	11	3	low	.	.	.	.	.	ENSG00000269028.3	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
TSPY17P(152509),SRIP3(45524)	TSPY17P(152520),SRIP3(45513)	./.	./.	chrY:6673438	chrY:6673449	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC006037.2(18451),AC006037.1(6140)	AC006037.2(18464),AC006037.1(6127)	./.	./.	chr2:234102941	chr2:234102954	intergenic	intergenic	duplication/ITD	0	0	0	14	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CLIP2	LIN52(32940),VSX2(5274)	+/+	./-	chr7:74338512	chr14:74234175	CDS	intergenic	translocation	0	0	0	1	8	low	.	.	.	.	.	ENSG00000106665.16	.	.	.	downstream	downstream	mismatches(2)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275786	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396455	chr8:22396468	intron	intron	duplication/ITD	0	0	0	71	68	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
PKNOX2	AC060809.1	+/+	+/+	chr11:125411520	chr15:81565296	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259543.1	.	.	downstream	upstream	mismatches	.	.	.
MEX3A	LINC02620	-/.	-/.	chr1:156082046	chr10:104479822	5'UTR	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	ENSG00000254726.3	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005178.1(71959),WSPAR(120784)	TRAPPC9	./.	-/.	chr5:133792893	chr8:140110814	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000167632.18	.	.	upstream	upstream	homopolymer(1)	.	.	.
CNTNAP2	CNTNAP2	+/.	+/.	chr7:146947373	chr7:146947411	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000174469.23	ENSG00000174469.23	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392819	chr1:90392828	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SFN(3785),GPN2(7891)	SFN(3840),GPN2(7836)	./.	./.	chr1:26868241	chr1:26868296	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC008725.1(56578),RNA5SP199(295261)	FXNP1(22776),NRXN3(87319)	./.	./.	chr5:155550176	chr14:78083054	intergenic	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22761),NRXN3(87334)	./.	./.	chr14:78082946	chr14:78083039	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FRMD3	TYRO3(16324),AC016134.1(9544)	-/.	./.	chr9:83416735	chr15:41599913	intron	intergenic	translocation	0	0	0	3	187	low	.	.	.	.	.	ENSG00000172159.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NXF2(27561),NXF2B(6113)	NXF2(27659),NXF2B(6015)	./.	./.	chrX:102354283	chrX:102354381	intergenic	intergenic	duplication/ITD	0	0	0	31	54	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(19),low_entropy(9)	.	.	.
LINC01197	LINC01197	-/-	-/-	chr15:95274901	chr15:95274916	exon	exon	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000248441.7	ENSG00000248441.7	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785769	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479823	chr10:104479832	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC144568.2(51829),AC131281.2(18980)	ZBTB44	./.	-/.	chr8:131604	chr11:130314625	intergenic	5'UTR	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000196323.14	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262477	chr6:42262486	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(6),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
ADAMTS9-AS2	ALDH1L2	+/.	-/.	chr3:64736203	chr12:105046186	intron	intron	translocation/3'-3'	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000136010.14	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	KI270733.1:131104	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(3)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262497	chr6:42262506	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(23)	.	.	.
MTA3	MYBPC2	+/.	+/.	chr2:42507934	chr19:50433455	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000057935.14	ENSG00000086967.10	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398685	chr7:54398751	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479813	chr10:104479824	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565342	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TSHZ3	TSHZ3	-/.	-/.	chr19:31183173	chr19:31183233	intron	intron	duplication/ITD	0	0	0	64	64	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000121297.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
EMCN	AC097459.1	-/.	+/.	chr4:100459169	chr4:100459184	intron	intron	duplication/5'-5'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000164035.10	ENSG00000286150.1	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392825	chr1:90392834	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
MLYCD	AC093627.22	+/+	-/+	chr16:83922180	chr7:117610	3'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150.7	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
CEP162(5453),LINC01611(187932)	MGA	./.	+/.	chr6:84233096	chr15:41656378	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000174197.16	.	.	upstream	downstream	mismatches(1)	.	.	.
AC132217.2	FP236383.3	-/.	+/.	chr11:2138068	chr21:8441930	intron	intron	translocation/5'-5'	0	0	0	0	46	low	.	.	.	.	.	ENSG00000284779.2	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092349	chr11:88092438	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FXNP1(22676),NRXN3(87419)	FXNP1(22685),NRXN3(87410)	./.	./.	chr14:78082954	chr14:78082963	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143073	chr11:82143172	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
AC092910.3	PGAM4P2(38320),KRT18P21(117568)	+/.	./.	chr3:120125715	chr4:115803139	intron	intergenic	translocation	0	0	0	306	18	low	.	.	.	.	.	ENSG00000242622.2	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916408	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565296	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
PPIP5K1	PPIP5K1	-/.	-/.	chr15:43537707	chr15:43537720	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000168781.22	ENSG00000168781.22	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396455	chr8:22396533	intron	intron	duplication/ITD	0	0	0	71	66	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AP003390.1(4503),AP001994.1(77178)	C12orf45	./.	+/.	chr11:119744126	chr12:105046182	intergenic	intron	translocation	0	0	0	1348	1664	low	.	.	.	.	.	.	ENSG00000151131.11	.	.	downstream	downstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396384	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396540	chr8:22396551	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(7),low_entropy(1),merge_adjacent	.	.	.
ERBB4	ERBB4	-/.	-/.	chr2:212188190	chr2:212188199	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000178568.15	ENSG00000178568.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PRKCA	RBM19	+/+	-/+	chr17:66302744	chr12:113832543	5'UTR	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	ENSG00000122965.11	.	.	downstream	upstream	mismatches(1)	.	.	.
AP000676.5	AP000676.5	-/.	-/.	chr11:87868571	chr11:87868611	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000285835.1	ENSG00000285835.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143075	chr11:82143174	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(23),low_entropy(14)	.	.	.
N4BP2L1	CDYL2	-/.	-/.	chr13:32410191	chr16:80633808	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139597.18	ENSG00000166446.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565305	chr15:81565314	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AP001823.1(3438),ELMOD1(750)	MID1IP1(102282),RNU6-591P(172361)	./.	./.	chr11:107590341	chrX:38908819	intergenic	intergenic	translocation	0	0	0	685	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01208	MIR4300HG	-/.	-/.	chr3:176822908	chr11:82143176	intron	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	ENSG00000223715.3	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	CLDN34(46716),WWC3(186)	+/.	./.	chr2:32916556	chrX:10015068	intron	intergenic	translocation	0	0	0	1606	6	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
BACH2	MIR4300HG	-/.	-/.	chr6:90231988	chr11:82143174	intron	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	ENSG00000112182.15	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	AC008014.1(15861),AC079906.1(77859)	-/.	./.	chr7:117610	chr12:46892645	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	downstream	mismatches(2)	.	.	.
ASTN2	.	-/.	./.	chr9:117110116	GL000220.1:116336	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000148219.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214784	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
CMAHP	OPHN1	-/.	-/.	chr6:25343856	chrX:68084366	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	ENSG00000079482.14	.	.	downstream	downstream	homopolymer(1)	.	.	.
GPR89B	AL050402.1(52850),AL133456.1(50929)	+/.	./.	chr1:147970492	chr22:27512910	intron	intergenic	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000188092.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MYL10(432),CUX1(186176)	PALM2AKAP2	./.	+/.	chr7:101629728	chr9:110147729	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000157654.19	.	.	upstream	upstream	mismatches(1)	.	.	.
MYL10(432),CUX1(186176)	GYG2P1	./.	-/.	chr7:101629728	chrY:12174285	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000206159.11	.	.	upstream	upstream	mismatches(1)	.	.	.
AC019257.1	AL445675.2(25676),AL603825.1(58526)	-/-	./+	chr8:1973463	chr1:242916479	exon	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000253764.3	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092332	chr11:88092439	intron	intron	duplication	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
NRIP3	FIBIN(9772),BBOX1(33866)	-/-	./-	chr11:9003961	chr11:27006859	5'UTR	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
VXN(3268),MYBL1(40383)	VXN(3331),MYBL1(40320)	./.	./.	chr8:66521792	chr8:66521855	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL139243.1	LINC00364(169407),AL512452.1(28223)	+/.	./.	chr10:98447700	chr13:67549401	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287261.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC109492.1	AC109492.1	+/.	+/.	chr5:87019432	chr5:87019443	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000249061.1	ENSG00000249061.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106231134	chr14:106231149	exon	exon	duplication/5'-5'	0	0	0	8	7	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
PROM1(9723),AC108063.2(20132)	PROM1(9768),AC108063.2(20087)	./.	./.	chr4:16094101	chr4:16094146	intergenic	intergenic	duplication/ITD	0	0	0	54	54	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NALCN	MT-RNR1	-/.	+/.	chr13:101105864	chrM:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000102452.18	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
PRKN	MARK2P15(325173),LINC02650(32758)	-/.	./.	chr6:162063547	chr10:83639648	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000185345.23	.	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
MBOAT1	AL136131.1(9404),AL136131.2(6631)	-/.	./.	chr6:20121587	chr6:43716155	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172197.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SRRM4	SRRM4	+/.	+/.	chr12:119137590	chr12:119137603	intron	intron	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	ENSG00000139767.10	ENSG00000139767.10	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479799	chr11:88092443	intron	intron	translocation	0	0	0	840	712	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396476	chr8:22396574	intron	intron	duplication/ITD	0	0	0	71	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	CREBBP	+/.	-/.	chr2:32916556	chr16:3803281	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000005339.15	.	.	downstream	downstream	mismatches	.	.	.
DCHS2(5225),AC110753.1(26463)	SYT1	./.	+/.	chr4:154497024	chr12:79198620	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000067715.14	.	.	downstream	downstream	mismatches(1)	.	.	.
ICE2P2(75318),GAPDHP50(21196)	Metazoa_SRP(1362),AF186192.1(13788)	./.	./.	chr3:89026246	chr8:144684826	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	GTF2IRD1P1	./.	-/.	chr1:188690471	chr7:66824573	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000230583.7	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZNF496	RANBP3	-/.	-/.	chr1:247323510	chr19:5977300	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000162714.12	ENSG00000031823.14	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGEF18	ARHGEF18	+/.	+/.	chr19:7385824	chr19:7385837	intron	intron	duplication/ITD	0	0	0	20	0	low	.	.	.	.	.	ENSG00000104880.19	ENSG00000104880.19	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2077),FP236383.3(121633)	+/.	./.	chr2:32916556	chr21:8259010	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
SUSD5(52300),FBXL2(5915)	LSM14B	./.	+/.	chr3:33271110	chr20:62131771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
AL355674.1(96153),RORB-AS1(4820)	AL355674.1(96213),RORB-AS1(4760)	./.	./.	chr9:74480731	chr9:74480791	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC021146.5	FP671120.4	-/.	+/.	chr4:68986258	chr21:8214396	intron	intron	translocation	0	0	0	0	77	low	.	.	.	.	.	ENSG00000249735.1	ENSG00000278996.1	.	.	upstream	upstream	mismatches(2)	.	.	.
DBX1(41727),HTATIP2(161483)	MIR4300HG	./.	-/.	chr11:20202202	chr11:82143174	intergenic	intron	inversion	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2	KCNMB2	+/.	+/.	chr3:178655098	chr3:178655107	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000197584.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PRPF40A	.	-/.	./.	chr2:152717656	KI270733.1:125834	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000196504.19	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
HMCN2	MT-RNR1	+/.	+/.	chr9:130363494	chrM:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000148357.16	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
AC100849.1	AC012060.1(92676),LINC02248(36443)	-/.	./.	chr8:19172721	chr15:26358594	intron	intergenic	translocation	0	0	0	1	4	low	.	.	.	.	.	ENSG00000253557.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22775),NRXN3(87320)	NUDT19P6(4835),PGRMC1(8165)	./.	./.	chr14:78083053	chrX:119228080	intergenic	intergenic	translocation	0	0	0	640	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PGAM4P2(38320),KRT18P21(117568)	NUP98	./.	-/.	chr4:115803139	chr11:3702363	intergenic	intron	translocation	0	0	0	18	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PPARG	LINC02620	+/.	-/.	chr3:12375262	chr10:104479810	intron	intron	translocation/5'-5'	0	0	0	0	984	low	.	.	.	.	.	ENSG00000132170.23	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AL513321.1(21924),AL592466.1(603)	./.	./.	chr1:188690471	chr10:65270716	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP251	LINC01432(143327),AL035258.1(2573)	+/.	./.	chr12:121961844	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000158023.10	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PPP1R3D	RNF212	-/-	-/-	chr20:59936654	chr4:1091639	intergenic	intron	translocation	0	0	0	4	0	low	.	.	Carbohydrate/starch-binding_module_(family_21)(100%)|	.	.	ENSG00000132825.7	ENSG00000178222.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104042.1(688042),AC061997.1(316216)	AC104042.1(688092),AC061997.1(316166)	./.	./.	chr11:37385909	chr11:37385959	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
THCAT155	PAXBP1(170),C21orf62-AS1(138)	-/.	./.	chr12:3490676	chr21:32771962	intron	intergenic	translocation	0	0	0	0	126	low	.	.	.	.	.	ENSG00000287243.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	DAAM1(45879),GPR135(11738)	-/.	./.	chr11:3702359	chr14:59417284	intron	intergenic	translocation	0	0	0	437	20	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
EPHA8	FP671120.4	+/.	+/.	chr1:22588283	chr21:8214689	intron	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	ENSG00000070886.12	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
BMS1P10(61194),AL591438.1(134943)	BMS1P10(61203),AL591438.1(134934)	./.	./.	chr9:63446311	chr9:63446320	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262467	chr6:42262482	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(9),low_entropy(42)	.	.	.
DDX25	AC012101.2	+/.	+/.	chr11:125904195	chr18:75459146	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000109832.14	ENSG00000287281.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR3663HG(22837),RPL12P26(4223)	MIR3663HG(22846),RPL12P26(4214)	./.	./.	chr10:117191945	chr10:117191954	intergenic	intergenic	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916570	chr21:8259013	intron	intergenic	translocation	0	0	0	1588	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419200	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
AL358053.1(206646),AL591644.1(221035)	AL358053.1(206661),AL591644.1(221020)	./.	./.	chr9:1756749	chr9:1756764	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(19),low_entropy(2)	.	.	.
SEMA5B(2024),PDIA5(36396)	SEMA5B(2033),PDIA5(36387)	./.	./.	chr3:123030629	chr3:123030638	intergenic	intergenic	duplication/ITD	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
DHRS9	MRPS18CP7(82624),RNA5SP505(121)	+/.	./.	chr2:169079984	chrX:53908933	intron	intergenic	translocation	0	0	0	35	3	low	.	.	.	.	.	ENSG00000073737.17	.	.	.	downstream	upstream	mismatches	.	.	.
PLXNA4	AP001823.1(3425),ELMOD1(763)	-/.	./.	chr7:132189039	chr11:107590328	intron	intergenic	translocation	0	0	0	211	683	low	.	.	.	.	.	ENSG00000221866.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565295	chr15:81565306	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442300	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	21	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
LINC01198(14969),LRCH1(22241)	LINC01198(15028),LRCH1(22182)	./.	./.	chr13:46530927	chr13:46530986	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262590	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683459	chr15:81683470	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC12A6	GLRA3	-/-	-/-	chr15:34232966	chr4:174639427	3'UTR	3'UTR	translocation	0	0	0	0	2	low	.	.	Amino_acid_permease(100%),Solute_carrier_family_12(100%)|	.	.	ENSG00000140199.13	ENSG00000145451.13	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	.	./.	./.	chr3:95431525	KI270733.1:130712	intergenic	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ZNF804A(304086),AC009315.1(181485)	ZNF804A(304101),AC009315.1(181470)	./.	./.	chr2:185243578	chr2:185243593	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683459	chr15:81683470	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC016026.1	.	-/.	./.	chr22:17796203	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000093100.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FAT1(23079),AC108865.1(141168)	BSCL2	./.	-/.	chr4:186749801	chr11:62706718	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000168000.15	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	GPR26	+/.	+/.	chr2:32916551	chr10:123666522	intron	CDS	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000154478.4	.	.	downstream	upstream	mismatches	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458062	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
SPATA17	SPATA17	+/.	+/.	chr1:217749938	chr1:217749986	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000162814.11	ENSG00000162814.11	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
LINC00486	.	+/.	./.	chr2:32916565	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
HDAC9	LINC01432(143327),AL035258.1(2573)	+/.	./.	chr7:18922939	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000048052.23	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15029),LRCH1(22181)	./.	./.	chr13:46530929	chr13:46530987	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(43),low_entropy(20)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236817	chr15:33236830	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	USP9YP6	+/.	-/.	chr15:81565298	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	FP671120.4	./.	+/.	chr3:95431525	chr21:8214396	intergenic	intron	translocation	0	0	0	5	77	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138686	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	.	./.	./.	chr3:95431525	GL000220.1:113856	intergenic	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:160650	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC02864	FP671120.4	-/.	+/.	chr18:73168245	chr21:8214396	intron	intron	translocation	0	0	0	0	77	low	.	.	.	.	.	ENSG00000263711.6	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGEF40	.	+/.	./.	chr14:21071327	KI270733.1:145500	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000165801.10	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8403226	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL020994.1	LINC02554	-/.	+/.	chr22:27316602	chr22:27316611	intron	intron	duplication/5'-5'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000226741.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
BMPER	BMPER	+/.	+/.	chr7:34065205	chr7:34065216	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000164619.10	ENSG00000164619.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL139383.1	.	-/.	./.	chr13:33517098	GL000220.1:113857	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000230490.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RNA5SP243(1515),FAM71F1(9802)	ANGPT1	./.	-/.	chr7:128699259	chr8:107291889	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262596	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
RFXAP	POP4(20364),PLEKHF1(27858)	+/.	./.	chr13:36819379	chr19:29637601	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000133111.4	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117459	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ANGPT1	BCL3	-/.	+/.	chr8:107291889	chr19:44749298	intron	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000154188.10	ENSG00000069399.15	.	.	upstream	downstream	mismatches	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491174	chr11:105491183	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092322	chr11:88092412	intron	intron	duplication/ITD	0	0	0	783	847	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262488	chr6:42262497	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
RADIL	MYO18A	-/.	-/.	chr7:4819762	chr17:29085035	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157927.17	ENSG00000196535.17	.	.	downstream	upstream	mismatches(1)	.	.	.
NOTCH2NLB(44938),RNU6-1171P(14662)	FAT1(23086),AC108865.1(141161)	./.	./.	chr1:148724717	chr4:186749808	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916556	chr21:8259013	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442048	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
THOC3	THOC3	-/.	-/.	chr5:175967559	chr5:175967573	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000051596.10	ENSG00000051596.10	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484556	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC108734.3	TMEM154	-/.	-/.	chr3:180816272	chr4:152661290	intron	intron	translocation	0	0	0	23	99	low	.	.	.	.	.	ENSG00000285336.1	ENSG00000170006.12	.	.	downstream	upstream	low_entropy	.	.	.
AC004825.1(21671),AC004825.2(25557)	AC004825.1(21736),AC004825.2(25492)	./.	./.	chr14:70881100	chr14:70881165	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	AL109933.1	+/.	+/.	chr2:32916556	chr6:160699197	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000224477.5	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
ANKRD44	ANKRD44	-/.	-/.	chr2:197034045	chr2:197034086	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000065413.20	ENSG00000065413.20	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
COL11A1	COL11A1	-/.	-/.	chr1:102945248	chr1:102945263	intron	intron	duplication/ITD	0	0	0	7	8	low	.	.	.	.	.	ENSG00000060718.22	ENSG00000060718.22	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
PLEKHG1	PLEKHG1	+/.	+/.	chr6:150674637	chr6:150674646	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000120278.16	ENSG00000120278.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916412	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
DMD	DMD	-/.	-/.	chrX:32178936	chrX:32178982	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117384	chr10:113117447	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	small_insert_size	.	.	.
ZNF483	CFAP58	+/.	+/.	chr9:111561018	chr10:104396381	intron	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	ENSG00000173258.13	ENSG00000120051.15	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
XRCC5	CDH12	+/.	-/.	chr2:216187822	chr5:22529193	intron	intron	translocation	0	0	0	55	3	low	.	.	.	.	.	ENSG00000079246.16	ENSG00000154162.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239859.3(829),AC239859.4(10147)	FBP1	./.	-/.	chr1:143451074	chr9:94621628	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000165140.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627095.1(5390),ZNF669(8505)	AL627095.1(5453),ZNF669(8442)	./.	./.	chr1:247091457	chr1:247091520	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
SFN(3793),GPN2(7883)	SFN(3856),GPN2(7820)	./.	./.	chr1:26868249	chr1:26868312	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(3)	.	.	.
CDH12	CDH12	-/.	-/.	chr5:22529193	chr5:22529202	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000154162.15	ENSG00000154162.15	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC139365.1(221267),AC118650.1(2132946)	DIP2A(27616),S100B(973)	./.	./.	chr8:43895858	chr21:46597631	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864040	chr9:106864055	intron	intron	duplication/ITD	0	0	0	86	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(6),low_entropy(9)	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078844	chr1:225078853	intron	intron	duplication/ITD	0	0	0	23	27	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC115085.1(45311),MAP2K6(14168)	AC115085.1(45350),MAP2K6(14129)	./.	./.	chr17:69400529	chr17:69400568	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TRIQK	TRIQK	-/.	-/.	chr8:93017106	chr8:93017168	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000205133.12	ENSG00000205133.12	.	.	upstream	downstream	duplicates(30),low_entropy(9)	.	.	.
LINC02554	LINC02554	+/.	+/.	chr22:27316602	chr22:27316611	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000226741.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683462	chr15:81683471	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC093627.22	LINC01592	-/.	-/.	chr7:117610	chr8:68940496	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000253658.6	.	.	upstream	upstream	mismatches(2)	.	.	.
ACTR2(30869),SPRED2(8729)	NTM	./.	+/.	chr2:65302122	chr11:131741209	intergenic	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	.	ENSG00000182667.14	.	.	upstream	downstream	mismatches(1)	.	.	.
XRCC5	AC005597.1	+/.	-/.	chr2:216187822	chr19:30223438	intron	intron	translocation	0	0	0	55	2	low	.	.	.	.	.	ENSG00000079246.16	ENSG00000267223.1	.	.	upstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22751),NRXN3(87344)	./.	./.	chr14:78082946	chr14:78083029	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL033504.1	AL033504.1	+/.	+/.	chr6:147790729	chr6:147790811	intron	intron	duplication/ITD	0	0	0	14	24	low	.	.	.	.	.	ENSG00000227681.5	ENSG00000227681.5	.	.	upstream	downstream	duplicates(1)	.	.	.
AC005998.1(41525),DPP6(96586)	LINC01432(143326),AL035258.1(2574)	./.	./.	chr7:153790511	chr20:22217980	intergenic	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00940	.	-/.	./.	chr12:1933581	KI270733.1:148230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
MYL10(432),CUX1(186176)	MALRD1	./.	+/.	chr7:101629728	chr10:19219495	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000204740.11	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396399	chr10:104396408	intron	intron	duplication/ITD	0	0	0	217	217	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275792	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419186	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565294	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51923),RBMY2WP(38069)	./.	./.	chrY:22724736	chrY:22724782	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(17),merge_adjacent	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046192	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046192	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(4)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902252	chr4:94902265	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
EYS	EYS	-/.	-/.	chr6:65371690	chr6:65371742	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000188107.15	ENSG00000188107.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
LNP1(22670),TMEM45A(13630)	LNP1(22711),TMEM45A(13589)	./.	./.	chr3:100478989	chr3:100479030	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902251	chr4:94902266	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902253	chr4:94902266	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
MSH2	ANGPT1	+/.	-/.	chr2:47491554	chr8:107291888	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000095002.15	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262502	chr6:42262511	intron	intron	duplication/ITD	0	0	0	3754	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683459	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214781	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
TMSB4X(48863),FAM9C(9527)	TMSB4X(48911),FAM9C(9479)	./.	./.	chrX:13026090	chrX:13026138	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158321	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
KCNMB2-AS1	LINC01163	-/.	+/.	chr3:178655138	chr10:128239620	intron	intron	translocation/3'-3'	0	0	0	13	8	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000280953.2	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916520	chr21:8397818	intron	intron	translocation	0	0	0	1644	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308664	chr3:19308673	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(7),low_entropy(2),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2078),FP236383.3(121632)	+/.	./.	chr2:32916556	chr21:8259011	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
SCX	CCSER1	+/+	+/-	chr8:144267104	chr4:90819174	CDS	intron	translocation/5'-5'	0	0	0	2	1	low	.	.	Helix-loop-helix_DNA-binding_domain(100%)|	.	.	ENSG00000260428.3	ENSG00000184305.15	.	.	downstream	downstream	mismatches(1)	.	.	.
ARHGAP44	ARHGAP44	+/.	+/.	chr17:12903077	chr17:12903126	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000006740.17	ENSG00000006740.17	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262489	chr6:42262588	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC025470.2	.	+/.	./.	chr5:57533339	KI270733.1:176193	exon	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	ENSG00000250961.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ASB3	ASB3	-/.	-/.	chr2:53594552	chr2:53594567	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000115239.24	ENSG00000115239.24	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AC023034.1	USP9YP6	+/.	-/.	chr15:81565292	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679809	chr21:39679822	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(21),low_entropy(10)	.	.	.
LINC00486	5_8S_rRNA(2113),FP236383.3(121597)	+/.	./.	chr2:32916559	chr21:8259046	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
AC099567.1(209),COL11A1(22416)	ZDHHC17	./.	+/.	chr1:102854051	chr12:76764150	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000186908.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	Y_RNA(76125),NECTIN3-AS1(85138)	+/.	./.	chr2:32916556	chr3:110803246	intron	intergenic	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565313	chr15:81565322	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FMN2	AL355309.1(99987),RAC1P4(16222)	+/.	./.	chr1:240200874	chrX:137425036	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155816.21	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8403957	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL606468.1(18421),LINC02608(16598)	AC025580.2	./.	+/.	chr1:212208680	chr15:45463192	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	ITPK1	+/.	-/.	chr2:32916556	chr14:93027313	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000100605.17	.	.	downstream	downstream	mismatches	.	.	.
SRGAP1	LINC02594	+/.	+/.	chr12:64071158	chr17:43679882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196935.9	ENSG00000267440.2	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824763	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419194	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CFTR	NUS1P4(12376),CYCSP35(6434)	+/.	./.	chr7:117448925	chr13:98623252	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000001626.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131105	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
AL929288.2(18712),RPS3AP9(3849)	B3GALNT1	./.	-/.	chr1:188690471	chr3:161095878	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000169255.15	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TPK1	AC002059.3	-/.	+/.	chr7:144654438	chr22:29393709	intron	intron	translocation/5'-5'	0	0	0	1	4	low	.	.	.	.	.	ENSG00000196511.14	ENSG00000285697.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02889	AC136297.1(13056),LINC02689(235)	-/.	./.	chr7:17457184	chr11:1350124	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236039.3	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FXNP1(22767),NRXN3(87328)	LINC01919(494606),AC090666.1(17537)	./.	./.	chr14:78083045	chr18:54124596	intergenic	intergenic	translocation	0	0	0	640	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092338	chr11:88092437	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP001652.1	FP671120.4	-/.	+/.	chr11:58919736	chr21:8214784	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000255523.1	ENSG00000278996.1	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TSHZ3	TSHZ3	-/.	-/.	chr19:31183173	chr19:31183227	intron	intron	duplication/ITD	0	0	0	64	64	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000121297.8	.	.	upstream	downstream	duplicates(47),low_entropy(7)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785682	chr2:101785781	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96168),RORB-AS1(4805)	./.	./.	chr9:74480733	chr9:74480746	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(19),low_entropy(5)	.	.	.
RADIL	TDRP(38146),ERICH1(30819)	-/.	./.	chr7:4819762	chr8:583927	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157927.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR4527HG	FP236383.3	+/.	+/.	chr18:47458659	chr21:8444186	intron	intron	translocation	0	0	0	0	765	low	.	.	.	.	.	ENSG00000267761.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	PCDH9	-/.	-/.	chr6:42262599	chr13:67141436	intron	intron	translocation/3'-3'	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000184226.15	.	.	downstream	downstream	mismatches(1)	.	.	.
RADIL	MTATP6P24(592),NUBP1(17898)	-/.	./.	chr7:4819762	chr16:10725888	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157927.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NCMAP	CFAP20DC	+/.	-/.	chr1:24566513	chr3:59049800	intron	5'UTR	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000184454.7	ENSG00000163689.20	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP20DC	LINC02685(7047),AC068858.1(23191)	-/.	./.	chr3:59049800	chr11:44985075	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4417),AP001994.1(77264)	AP003390.1(4516),AP001994.1(77165)	./.	./.	chr11:119744040	chr11:119744139	intergenic	intergenic	duplication/ITD	0	0	0	1470	1348	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP20DC	ABCC8	-/.	-/.	chr3:59049800	chr11:17476060	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689.20	ENSG00000006071.15	.	.	downstream	downstream	mismatches(1)	.	.	.
PRDM1	.	+/+	./+	chr6:106098661	GL000220.1:114258	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046193	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(32),low_entropy(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	chr5:103482858	chr15:45463201	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000226926.7	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AP001977.1	AC016694.1(51928),RBMY2WP(38064)	+/.	./.	chr11:121765691	chrY:22724787	intron	intergenic	translocation	0	0	0	23	1708	low	.	.	.	.	.	ENSG00000286044.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
INPP5D	GML	+/.	+/.	chr2:233117636	chr8:142912472	intron	intron	translocation/5'-5'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000104499.7	.	.	downstream	downstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275755	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683500	chr15:81683513	intron	intron	duplication/5'-5'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNU1-154P(728),AC239860.2(27377)	RNU1-154P(737),AC239860.2(27368)	./.	./.	chr1:145432421	chr1:145432430	intergenic	intergenic	duplication/ITD	0	0	0	186	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
SLC35E4	KLRB1	+/+	-/-	chr22:30636548	chr12:9594772	CDS	3'UTR	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000100036.13	ENSG00000111796.4	.	.	downstream	downstream	mismatches(1)	.	.	.
AL136115.3(9930),KHDRBS1(16904)	CFAP20DC	./.	-/.	chr1:31996964	chr3:59049800	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000163689.20	.	.	upstream	downstream	mismatches(1)	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479894	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01127	LINC01127	+/.	+/.	chr2:101965170	chr2:101965216	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000281162.2	ENSG00000281162.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LRP1B	Metazoa_SRP(1362),AF186192.1(13788)	-/.	./.	chr2:140676216	chr8:144684826	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000168702.18	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469920	chr7:26469929	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(10),low_entropy(1)	.	.	.
ATP2B2	LINC02685(7047),AC068858.1(23191)	-/-	./+	chr3:10449762	chr11:44985075	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157087.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261462	chr1:162261529	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NAV1	NAV1	+/.	+/.	chr1:201702678	chr1:201702687	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000134369.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ATP2B2	DYM	-/-	-/-	chr3:10449763	chr18:49184267	5'UTR	intron	translocation	0	0	0	0	4	low	.	.	|Dyggve-Melchior-Clausen_syndrome_protein(24%)	.	.	ENSG00000157087.20	ENSG00000141627.14	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565363	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
CDK14	LSM14B	+/.	+/.	chr7:90766754	chr20:62131771	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000058091.17	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117372	chr10:113117381	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
NCMAP	NEURL1	+/.	+/.	chr1:24566513	chr10:103571846	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000184454.7	ENSG00000107954.10	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH@-ext	AC011474.1	-/.	-/.	chr14:106419211	chr19:29447568	exon	intron	translocation/3'-3'	0	0	0	86	53	low	.	.	.	.	.	IGH.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
NEURL1	LINC02685(7047),AC068858.1(23191)	+/.	./.	chr10:103571846	chr11:44985075	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107954.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NEURL1	MYO18A	+/.	-/.	chr10:103571846	chr17:29085035	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107954.10	ENSG00000196535.17	.	.	downstream	upstream	mismatches(1)	.	.	.
TDRP(38146),ERICH1(30819)	NEURL1	./.	+/.	chr8:583927	chr10:103571846	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107954.10	.	.	upstream	downstream	mismatches(1)	.	.	.
AL390957.1	AL390957.1	-/.	-/.	chr1:192863002	chr1:192863015	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000285280.2	ENSG00000285280.2	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479889	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886341	chr10:44886354	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NEURL1	DYM	+/.	-/.	chr10:103571845	chr18:49184267	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000107954.10	ENSG00000141627.14	.	.	downstream	downstream	mismatches(1)	.	.	.
DIAPH2-AS1(147388),AL354685.1(57286)	DIAPH2-AS1(147401),AL354685.1(57273)	./.	./.	chrX:97789977	chrX:97789990	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674408	chr7:35674419	intron	intron	duplication/ITD	0	0	0	59	0	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HOXC6	HOXC6	+/.	+/.	chr12:54014001	chr12:54014055	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000197757.8	ENSG00000197757.8	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC114477.1(10760),RANP7(81328)	.	./.	./.	chr3:22822807	GL000220.1:114507	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565346	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
FP236383.3	LINC00316(21890),MTCO1P3(12311)	+/.	./.	chr21:8442050	chr21:45363880	intron	intergenic	inversion	0	0	0	2539	8	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916406	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565294	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
ZNF808	ZNF808	+/.	+/.	chr19:52561159	chr19:52561174	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000198482.14	ENSG00000198482.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
TAB2(11977),ZC3H12D(23205)	TAB2(11986),ZC3H12D(23196)	./.	./.	chr6:149423590	chr6:149423599	intergenic	intergenic	duplication/ITD	0	0	0	295	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
AC078851.1(47986),RN7SL283P(108821)	AC078851.1(47995),RN7SL283P(108812)	./.	./.	chr2:139873863	chr2:139873872	intergenic	intergenic	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NALCN-AS1	NALCN-AS1	+/.	+/.	chr13:100817281	chr13:100817341	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000233009.1	ENSG00000233009.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661290	chr4:152661299	intron	intron	duplication/ITD	0	0	0	99	10	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	RGPD5	+/.	+/.	chr2:32916565	chr2:109794609	intron	intron	inversion/3'-3'	0	0	0	1588	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000015568.13	.	.	downstream	downstream	mismatches	.	.	.
PACRG	PACRG	+/.	+/.	chr6:162958879	chr6:162958939	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000112530.11	ENSG00000112530.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
RN7SL824P(52808),GFI1(17550)	FP236383.3	./.	+/.	chr1:92455493	chr21:8414078	intergenic	intron	translocation	0	0	0	16	24	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC002463.1	GDA	+/.	+/.	chr7:112751480	chr9:72149977	intron	intron	translocation/3'-3'	0	0	0	22	1	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000119125.17	.	.	upstream	upstream	mismatches(1)	.	.	.
CDH18	CDH18	-/.	-/.	chr5:19994731	chr5:19994794	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000145526.12	ENSG00000145526.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
OAT	AL807742.1	-/.	-/.	chr10:124411230	chrX:21066901	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065154.12	ENSG00000283380.1	.	.	upstream	upstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:178318	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC009227.2(116370),RNA5SP107(13217)	AC009227.2(116379),RNA5SP107(13208)	./.	./.	chr2:154577190	chr2:154577199	intergenic	intergenic	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC084768.2(26605),AC087369.1(105288)	AC084768.2(26641),AC087369.1(105252)	./.	./.	chr8:5743409	chr8:5743445	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143094	chr11:82143103	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	AC023034.1	+/.	+/.	chr8:22396531	chr15:81565298	intron	intron	translocation/3'-3'	0	0	0	308	216	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
C6orf223	FAM222A	+/+	+/+	chr6:44004039	chr12:109716200	exon	intron	translocation	0	0	0	0	4	low	.	.	|Protein_family_of_FAM222A(100%)	.	.	ENSG00000181577.16	ENSG00000139438.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01744(31865),MAP10(21728)	LRRC4B	./.	-/.	chr1:232783164	chr19:50548287	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000131409.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AC012085.1(14957),CRADD(20832)	AC012085.1(15010),CRADD(20779)	./.	./.	chr12:93656543	chr12:93656596	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC01197	TRERF1	-/-	-/+	chr15:95274902	chr6:42262467	exon	intron	translocation/5'-5'	0	0	0	3	3576	low	.	.	.	.	.	ENSG00000248441.7	ENSG00000124496.12	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKCA	SYCN	+/+	-/-	chr17:66302744	chr19:39203079	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	|Syncollin(1%)	.	.	ENSG00000154229.12	ENSG00000179751.7	.	.	downstream	downstream	mismatches(1)	.	.	.
CLN8	KIAA1217	+/.	+/.	chr8:1799260	chr10:24208940	intron	5'UTR	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000182372.10	ENSG00000120549.18	.	.	upstream	upstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	SYCN	./.	-/.	chr1:47437186	chr19:39203079	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000179751.7	.	.	downstream	downstream	mismatches(1)	.	.	.
AC044798.3	AC115100.1(211667),AC090506.1(87535)	-/.	./.	chr16:49155816	chr18:30625740	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	RBM19	./.	-/.	chr1:47437186	chr12:113832543	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000122965.11	.	.	downstream	upstream	mismatches(1)	.	.	.
MARS1	.	+/.	./.	chr12:57488235	KI270733.1:173089	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3316),MYBL1(40335)	./.	./.	chr8:66521791	chr8:66521840	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF701	ZNF808	+/.	+/.	chr19:52561159	chr19:52561213	intron	intron	duplication	0	0	0	13	13	low	.	.	.	.	.	ENSG00000167562.13	ENSG00000198482.14	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392827	chr1:90392836	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
PRKCA	TOLLIP	+/+	-/+	chr17:66302744	chr11:1289356	5'UTR	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	ENSG00000078902.16	.	.	downstream	upstream	mismatches(1)	.	.	.
NRIP3	NDUFB9P3(84566),LINC01608(5536)	-/-	./+	chr11:9003961	chr8:110894460	5'UTR	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CD81	TOLLIP	+/+	-/+	chr11:2377523	chr11:1289356	5'UTR	intron	duplication/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	ENSG00000078902.16	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	.	-/.	./.	chr5:80650927	GL000220.1:113865	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
COL4A6	COL4A6	-/.	-/.	chrX:108403234	chrX:108403249	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000197565.16	ENSG00000197565.16	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AL353611.2(21963),OLFM1(57605)	NXPH3	./.	+/.	chr9:135017817	chr17:49576097	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182575.8	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFPM2	GSDMC(10962),AC022973.5(34715)	+/.	./.	chr8:104827532	chr8:129797586	intron	intergenic	inversion	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169946.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MARS1	FP236383.3	+/.	+/.	chr12:57488235	chr21:8414040	exon	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000166986.15	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
CD81	AL354897.1	+/+	+/+	chr11:2377523	chr9:85169822	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	ENSG00000285556.1	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKCA	AL162726.3(137673),RASEF(61723)	+/+	./+	chr17:66302744	chr9:82917867	5'UTR	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638062	chr7:116638071	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	AL162726.3(137673),RASEF(61723)	./.	./.	chr1:47437186	chr9:82917867	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FBXO43	FBP1	-/.	-/.	chr8:100145597	chr9:94621628	5'UTR	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000156509.14	ENSG00000165140.11	.	.	downstream	downstream	mismatches(1)	.	.	.
CD81	C5orf47	+/+	+/-	chr11:2377523	chr5:173985151	5'UTR	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	ENSG00000185056.10	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	ELMO1(71166),NECAP1P1(65111)	+/.	./.	chr2:32916556	chr7:37520389	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
CCDC187	TEAD4	-/.	+/.	chr9:136267876	chr12:2981316	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260220.7	ENSG00000197905.10	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021213	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(12),low_entropy(1),merge_adjacent	.	.	.
CANT1	.	-/-	./+	chr17:78995148	GL000220.1:158219	CDS	intergenic	translocation	0	0	0	8	.	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670918	chr2:23670931	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
ATXN7	FAM27E3(5196),FAM27B(1316)	+/.	./.	chr3:63900074	chr9:67724374	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC105180.2(10848),ZFAT(76453)	RNU7-165P(1270),AL133482.1(127315)	./.	./.	chr8:134401335	chr10:113354754	intergenic	intergenic	translocation	0	0	0	120	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(23),mismatches(1)	.	.	.
ILKAP	FP236383.3	-/.	+/.	chr2:238203140	chr21:8420283	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132323.9	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
GEMIN8(106768),UBE2E4P(107721)	GEMIN8(106839),UBE2E4P(107650)	./.	./.	chrX:14136661	chrX:14136732	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),low_entropy(9)	.	.	.
UNC5A	UNC5A	+/.	+/.	chr5:176834661	chr5:176834723	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000113763.12	ENSG00000113763.12	.	.	upstream	downstream	low_entropy(2)	.	.	.
PLCB4	FP236383.3	+/.	+/.	chr20:9262355	chr21:8400020	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000101333.18	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FAF1	ZNF462	-/.	+/.	chr1:50527838	chr9:106864116	intron	intron	translocation/5'-5'	0	0	0	0	87	low	.	.	.	.	.	ENSG00000185104.20	ENSG00000148143.13	.	.	upstream	downstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	.	./.	./.	chr3:103984260	KI270733.1:176182	intergenic	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:116680	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
COMETT	AC060809.1	-/.	+/.	chr7:116638129	chr15:81565296	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259543.1	.	.	downstream	upstream	low_entropy	.	.	.
AL929288.2(18712),RPS3AP9(3849)	LINC01592	./.	-/.	chr1:188690471	chr8:68940495	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000253658.6	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MITF	FP236383.3(1402),FP236383.11(6126)	+/.	./.	chr3:69888749	chr21:8456194	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000187098.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479819	chr10:104479828	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
KLHL7-DT	KLHL7-DT	-/.	-/.	chr7:23104754	chr7:23104768	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000230658.2	ENSG00000230658.2	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CMAHP	TUFMP1(4224),AC129926.2(1285)	-/.	./.	chr6:25343856	chr17:27088260	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8217208	intron	intron	translocation	0	0	0	1606	20	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
AL022154.1(56202),AL645638.1(22343)	AL022154.1(56240),AL645638.1(22305)	./.	./.	chrX:88886060	chrX:88886098	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:160652	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
TPTE2P1(13480),RPL34P27(6610)	.	./.	./.	chr13:24981967	KI270733.1:131114	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01950	RADIL	-/.	-/.	chr5:106932149	chr7:4819762	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251027.2	ENSG00000157927.17	.	.	upstream	downstream	mismatches(1)	.	.	.
AC087636.1	CYP2A7	-/.	-/.	chr15:95080452	chr19:40880795	intron	intron	translocation/5'-5'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000258773.2	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236820	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262560	chr8:143038457	intron	intergenic	translocation	0	0	0	3754	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
EVA1A	AC124947.1	-/.	-/.	chr2:75555302	chr12:93375494	intron	intron	translocation/5'-5'	0	0	0	3	30	low	.	.	.	.	.	ENSG00000115363.14	ENSG00000257252.6	.	.	upstream	upstream	mismatches(1)	.	.	.
AC003686.1(56182),AC004486.1(51304)	AC003686.1(56195),AC004486.1(51291)	./.	./.	chr12:47541904	chr12:47541917	intergenic	intergenic	duplication/ITD	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),low_entropy(6)	.	.	.
CD81	IL17REL	+/+	-/+	chr11:2377523	chr22:49996701	5'UTR	3'UTR	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	ENSG00000188263.10	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481700	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
PAXBP1(176),C21orf62-AS1(132)	PPP1R3F	./.	+/.	chr21:32771968	chrX:49291327	intergenic	intron	translocation	0	0	0	126	0	low	.	.	.	.	.	.	ENSG00000049769.14	.	.	downstream	downstream	mismatches(1)	.	.	.
GALNT2	CR392039.1(648),CR392039.3(8418)	+/.	./.	chr1:230175600	chr21:8988078	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000143641.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916556	chr3:65400258	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	upstream	mismatches	.	.	.
DMD	DMD	-/.	-/.	chrX:31187718	chrX:31187731	intron	intron	duplication/ITD	0	0	0	73	69	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046188	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(5)	.	.	.
CARMIL1	AL353572.4(35734),SPATA31C2(16596)	+/.	./.	chr6:25343856	chr9:88112709	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000079691.18	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL137803.1	AL021937.3	-/.	-/.	chr1:75720877	chr22:32328458	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000230863.3	ENSG00000234626.2	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046188	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(5)	.	.	.
AC093898.1	FP236383.3	+/.	+/.	chr4:18644544	chr21:8444255	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000286046.1	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
SH3KBP1	SH3KBP1	-/.	-/.	chrX:19760026	chrX:19760039	intron	intron	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	ENSG00000147010.18	ENSG00000147010.18	.	.	upstream	downstream	low_entropy(2)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	CCDC200	./.	-/.	chr3:95431526	chr17:43295967	intergenic	intron	translocation	0	0	0	5	1	low	.	.	.	.	.	.	ENSG00000236383.8	.	.	downstream	downstream	mismatches(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	AC092910.3	./.	+/.	chr3:35036274	chr3:120125713	intergenic	intron	deletion	0	0	0	237	306	low	.	.	.	.	.	.	ENSG00000242622.2	.	.	downstream	upstream	duplicates(6)	.	.	.
AL353615.1(19403),SOCS5P2(73759)	AP000821.1	./.	-/.	chr9:135373687	chr11:126101059	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261257.1	.	.	upstream	downstream	mismatches(1)	.	.	.
SDK1(139457),CYP3A54P(103502)	SUPT5H	./.	+/.	chr7:4408457	chr19:39458235	intergenic	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000196235.14	.	.	upstream	upstream	mismatches(2)	.	.	.
ZNF701	ZNF701	+/.	+/.	chr19:52561159	chr19:52561213	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000167562.13	ENSG00000167562.13	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
LINC00486	INSIG2	+/.	+/.	chr2:32916556	chr2:118089592	intron	intron	deletion	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000125629.15	.	.	downstream	upstream	mismatches	.	.	.
ENPP6	AC025580.2	-/.	+/.	chr4:184122405	chr15:45462788	intron	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MYO3B	SHISAL1	+/.	-/.	chr2:170507249	chr22:44265332	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000071909.19	ENSG00000138944.8	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RN7SKP48(34876),AC097488.1(110458)	FP236383.3	./.	+/.	chr4:85135699	chr21:8444255	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	INSIG2	+/.	+/.	chr2:32916562	chr2:118089590	intron	intron	deletion	0	0	0	1588	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000125629.15	.	.	downstream	upstream	mismatches	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125718	chr3:120125755	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(6),merge_adjacent	.	.	.
AC002072.1	AC002072.1	+/.	+/.	chrX:113133823	chrX:113133833	intron	intron	duplication/ITD	0	0	0	6	1	low	.	.	.	.	.	ENSG00000286072.1	ENSG00000286072.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702367	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(6)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419198	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(12),low_entropy(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916604	chr3:65729136	intron	intron	translocation	0	0	0	18	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
TACC2	LINC02156	+/.	+/.	chr10:122215486	chr12:47411593	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138162.19	ENSG00000257906.3	.	.	upstream	upstream	homopolymer(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481703	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FLT1	AC016820.1(102442),ZMIZ1-AS1(143864)	-/-	./+	chr13:28431279	chr10:78799464	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Immunoglobulin_domain(28%)|	.	.	ENSG00000102755.12	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL357513.1(66903),TBC1D32(167116)	AL357513.1(66950),TBC1D32(167069)	./.	./.	chr6:120912378	chr6:120912425	intergenic	intergenic	duplication/ITD	0	0	0	30	30	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(20),low_entropy(8)	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79736),AC016903.1(10548)	./.	./.	chr2:204459485	chr2:204459528	intergenic	intergenic	duplication/ITD	0	0	0	60	60	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(45),low_entropy(13)	.	.	.
ALOX15P1	C17orf100	+/.	+/.	chr17:6659790	chr17:6659833	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000274114.2	ENSG00000256806.6	.	.	upstream	downstream	duplicates(9),low_entropy(5)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298012	chr7:32298021	intron	intron	duplication/ITD	0	0	0	72	72	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(2)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275788	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC025580.2	MACROD2	+/.	+/.	chr15:45462429	chr20:15209116	intron	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000172264.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
INTS5(475),C11orf98(9040),LBHD1(9040)	INTS5(484),C11orf98(9031),LBHD1(9031)	./.	./.	chr11:62653777	chr11:62653786	intergenic	intergenic	duplication/ITD	0	0	0	105	93	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092433	chr21:8403226	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AC026765.3	FP671120.4	+/.	+/.	chr12:114698741	chr21:8214883	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000257817.2	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
TET2	TET2	+/.	+/.	chr4:105163800	chr4:105163855	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000168769.14	ENSG00000168769.14	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
FAM83B	.	+/.	./.	chr6:54859661	KI270733.1:131120	intron	intergenic	translocation	0	0	0	3	.	low	.	.	.	.	.	ENSG00000168143.9	.	.	.	downstream	upstream	duplicates(5),uninteresting_contigs(2)	.	.	.
FOXP3	FOXP3	-/.	-/.	chrX:49256220	chrX:49256229	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000049768.16	ENSG00000049768.16	.	.	upstream	downstream	duplicates(2)	.	.	.
SHISA9	SHISA9	+/.	+/.	chr16:12943335	chr16:12943344	intron	intron	duplication/ITD	0	0	0	54	51	low	.	.	.	.	.	ENSG00000237515.9	ENSG00000237515.9	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FAM9B	FAM9B	-/.	-/.	chrX:9089550	chrX:9089606	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000177138.17	ENSG00000177138.17	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
AC008014.1	FP236383.3	+/.	+/.	chr12:46670813	chr21:8399950	intron	intron	translocation	0	0	0	0	729	low	.	.	.	.	.	ENSG00000257261.6	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785673	chr2:101785771	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
FMN1(27374),TMCO5B(13464)	FMN1(27387),TMCO5B(13451)	./.	./.	chr15:33222088	chr15:33222101	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785763	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
DYM	FP236383.3	-/.	+/.	chr18:49060769	chr21:8444186	intron	intron	translocation/3'-3'	0	0	0	6	765	low	.	.	.	.	.	ENSG00000141627.14	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
SIM1	TSHZ3	-/.	-/.	chr6:100458071	chr19:31183212	intron	intron	translocation	0	0	0	69	10	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000121297.8	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308668	chr3:19308677	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(26),low_entropy(7)	.	.	.
PLPP4	PLPP4	+/.	+/.	chr10:120574167	chr10:120574182	intron	intron	duplication/ITD	0	0	0	65	65	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000203805.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC115100.1(211620),AC090506.1(87582)	AC115100.1(211667),AC090506.1(87535)	./.	./.	chr18:30625693	chr18:30625740	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(4)	.	.	.
PDZPH1P	PDZPH1P	-/.	-/.	chr5:103482858	chr5:103482872	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000226926.7	ENSG00000226926.7	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
AC006960.1(3099),AC006960.3(10772)	AC006960.1(3136),AC006960.3(10735)	./.	./.	chr7:36309003	chr7:36309040	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8401705	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC02554	LINC02554	+/.	+/.	chr22:27316602	chr22:27316617	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000226741.2	.	.	upstream	downstream	duplicates(5),low_entropy(6)	.	.	.
BEND3	ARHGEF18	-/-	+/+	chr6:107115154	chr19:7385854	5'UTR	intron	translocation	0	0	0	0	20	low	.	.	|PH_domain(100%),RhoGEF_domain(100%)	.	.	ENSG00000178409.14	ENSG00000104880.19	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNV1	ADRB1	-/.	+/.	chr8:109968125	chr10:114045909	CDS	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164794.9	ENSG00000043591.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00940	FP236383.3	-/.	+/.	chr12:1933581	chr21:8438951	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000235049.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8448165	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC01278	.	-/.	./.	chrX:63433600	KI270733.1:131005	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000235437.8	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565313	chr15:81565322	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
SH3TC1	.	+/.	./.	chr4:8239876	KI270733.1:131005	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565348	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
5_8S_rRNA(1979),FP236383.3(121731)	LINC01278	./.	-/.	chr21:8258912	chrX:63433600	intergenic	intron	translocation	0	0	0	101	7	low	.	.	.	.	.	.	ENSG00000235437.8	.	.	upstream	upstream	mismatches	.	.	.
AC078909.2(1312),Metazoa_SRP(105321)	AC078909.2(1366),Metazoa_SRP(105267)	./.	./.	chr15:37111296	chr15:37111350	intergenic	intergenic	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670912	chr2:23670981	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CSTP1	5_8S_rRNA(1979),FP236383.3(121731)	-/.	./.	chr20:23922329	chr21:8258912	intron	intergenic	translocation	0	0	0	7	101	low	.	.	.	.	.	ENSG00000228476.2	.	.	.	downstream	upstream	mismatches	.	.	.
LINC01779(44712),U3(67653)	GALNT10	./.	+/.	chr1:116210953	chr5:154268430	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164574.16	.	.	downstream	upstream	mismatches(1)	.	.	.
UBAP1L	POP4(20364),PLEKHF1(27858)	-/-	./+	chr15:65102283	chr19:29637601	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000246922.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU7-29P(10972),AL627313.1(26973)	FP671120.4	./.	+/.	chr1:26613404	chr21:8214689	intergenic	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
IGSF1	.	-/.	./.	chrX:131338235	GL000220.1:116805	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000147255.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
IGSF9B	FP236383.3	-/.	+/.	chr11:133918828	chr21:8400020	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000080854.16	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
CSTP1	FP671120.4	-/.	+/.	chr20:23922329	chr21:8214689	intron	intron	translocation/3'-3'	0	0	0	7	1	low	.	.	.	.	.	ENSG00000228476.2	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
AL356130.1(30315),LINC01622(19002)	LINC01495	./.	-/.	chr6:939321	chr11:22480925	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000255323.6	.	.	downstream	upstream	mismatches(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3321),MYBL1(40330)	./.	./.	chr8:66521791	chr8:66521845	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916462	chr21:8442048	intron	intron	translocation	0	0	0	914	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092338	chr11:88092445	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
SH3TC1	.	+/+	./+	chr4:8227971	KI270733.1:131005	CDS	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8216072	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
AC093627.22	AC084759.3(20),AC084759.2(31977)	-/.	./.	chr7:117610	chr15:53914732	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	downstream	mismatches(2)	.	.	.
FYB2	.	-/.	./.	chr1:56742060	GL000220.1:158121	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000187889.13	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
LINC01320	FP236383.3	+/.	+/.	chr2:33767498	chr21:8397443	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000228262.10	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470843	chr10:3470942	intron	intron	duplication/ITD	0	0	0	23	19	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SH3TC1	.	+/.	./.	chr4:8239876	GL000220.1:158121	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AP001823.1(3425),ELMOD1(763)	EML1	./.	+/.	chr11:107590328	chr14:99796203	intergenic	intron	translocation	0	0	0	683	1790	low	.	.	.	.	.	.	ENSG00000066629.18	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139020.1(12710),AL133167.1(58397)	AL139020.1(12723),AL133167.1(58384)	./.	./.	chr14:95770366	chr14:95770379	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC01278	.	-/.	./.	chrX:63433600	GL000220.1:114149	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000235437.8	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
FOXP3	FOXP3	-/.	-/.	chrX:49256220	chrX:49256275	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000049768.16	ENSG00000049768.16	.	.	upstream	downstream	small_insert_size	.	.	.
COMETT	AC023034.1	-/.	+/.	chr7:116638129	chr15:81565298	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259594.6	.	.	downstream	upstream	low_entropy	.	.	.
DNAH14	AC010746.2(61298),NPM1P46(5663)	+/.	./.	chr1:225078870	chr2:197374038	intron	intergenic	translocation	0	0	0	28	3	low	.	.	.	.	.	ENSG00000185842.15	.	.	.	downstream	upstream	mismatches	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581669	chr5:93581684	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(13),low_entropy(13)	.	.	.
GMDS	AP001599.1	-/.	+/.	chr6:2230945	chr21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000112699.11	ENSG00000223563.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
MITF	.	+/.	./.	chr3:69888749	KI270733.1:145956	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000187098.17	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CFAP58	MIR17HG(30271),GPC5(13771)	+/.	./.	chr10:104396370	chr13:91384850	intron	intergenic	translocation	0	0	0	217	3	low	.	.	.	.	.	ENSG00000120051.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SH3TC1	.	+/+	./+	chr4:8227971	GL000220.1:114149	CDS	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
EPHA8	.	+/.	./.	chr1:22588283	GL000220.1:114149	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000070886.12	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
CSTP1	.	-/.	./.	chr20:23922329	GL000220.1:114149	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000228476.2	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
RNU7-29P(10972),AL627313.1(26973)	.	./.	./.	chr1:26613404	KI270733.1:176084	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SH3TC1	.	+/+	./+	chr4:8227971	KI270733.1:176084	CDS	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565357	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:160648	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
TPT1P14(48516),RPL35AP37(90458)	CSAG3	./.	+/.	chrX:15026979	chrX:152758872	intergenic	intron	duplication	0	0	0	121	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
IL15(110187),INPP4B(178986)	RNA5SP349(5010),SNORD39(137498)	./.	./.	chr4:141844174	chr11:109125996	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661631	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	.	+/.	./.	chr15:81565292	KI270733.1:148202	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
CSNKA2IP	MAPK8IP3	+/.	+/.	chr3:88415602	chr16:1707113	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283434.2	ENSG00000138834.14	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670918	chr2:23670931	intron	intron	duplication/5'-5'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
COX6A1P2(5943),RPL12P2(40182)	CDH15	./.	+/.	chr6:37051132	chr16:89184567	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000129910.8	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00940	FP671120.4(3818),FP671120.10(3890)	-/.	./.	chr12:1933581	chr21:8231464	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BOLA3	AC016304.1(54229),TMCO5A(376607)	-/.	./.	chr2:74147765	chr15:37545332	exon	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000163170.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL365204.3(90884),AL513317.1(22403)	AL365204.3(90897),AL513317.1(22390)	./.	./.	chr9:24047328	chr9:24047341	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(17),low_entropy(6)	.	.	.
COX6A1P2(5943),RPL12P2(40182)	TTC12	./.	+/.	chr6:37051132	chr11:113314680	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149292.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479895	chr10:104479908	intron	intron	duplication/ITD	0	0	0	48	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RPL12P4(19716),LINC01440(314042)	LSM14B	./.	+/.	chr20:55094856	chr20:62131771	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
COX6A1P2(5943),RPL12P2(40182)	CDIN1	./.	+/.	chr6:37051132	chr15:36617072	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000186073.14	.	.	upstream	upstream	mismatches(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	chr7:139729319	chr7:139729377	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000064393.16	ENSG00000064393.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661627	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	AL139381.1	-/.	-/.	chr11:82143175	chr13:94977307	intron	intron	translocation	0	0	0	719	4	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000287635.1	.	.	downstream	upstream	mismatches(1)	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236828	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396495	chr8:22396539	intron	intron	deletion/read-through	0	0	0	71	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	downstream	upstream	read_through(1)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96192),RORB-AS1(4781)	./.	./.	chr2:234102940	chr9:74480770	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU7-66P(128430),AL591004.1(353074)	.	./.	./.	chr6:66857334	GL000220.1:158230	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RAB44(1130),Z85996.1(2736)	RAB44(1193),Z85996.1(2673)	./.	./.	chr6:36734314	chr6:36734377	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(3)	.	.	.
LRRTM4	LRRTM4	-/.	-/.	chr2:77480823	chr2:77480868	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000176204.14	ENSG00000176204.14	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP7D2	MAP7D2	-/.	-/.	chrX:20027696	chrX:20027794	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000184368.16	ENSG00000184368.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC39A12(66893),CACNB2(30239)	DIPK1C	./.	-/.	chr10:18110185	chr18:74457183	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000187773.9	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479834	chr10:104479843	intron	intron	duplication/ITD	0	0	0	992	984	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TUBB2BP1(658),LINC02525(2204)	KANK1	./.	+/.	chr6:3180422	chr9:677771	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000107104.20	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025465.1	PIEZO2	-/.	-/.	chr5:124505746	chr18:10859832	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000248296.1	ENSG00000154864.13	.	.	downstream	upstream	mismatches(1)	.	.	.
NXF2(6015),NXF2B(27659)	NXF2(6024),NXF2B(27650)	./.	./.	chrX:102332737	chrX:102332746	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC025580.2	MACROD2	+/.	+/.	chr15:45462786	chr20:15209116	intron	intron	translocation/5'-5'	0	0	0	0	12	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000172264.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01198(14977),LRCH1(22233)	LINC01198(15028),LRCH1(22182)	./.	./.	chr13:46530935	chr13:46530986	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
EPHA8	5_8S_rRNA(1979),FP236383.3(121731)	+/.	./.	chr1:22588283	chr21:8258912	intron	intergenic	translocation	0	0	0	7	101	low	.	.	.	.	.	ENSG00000070886.12	.	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396370	chr10:104479903	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	low_entropy	.	.	.
AC026116.1(81923),DPY19L2(116953)	AC026116.1(81932),DPY19L2(116944)	./.	./.	chr12:63441960	chr12:63441969	intergenic	intergenic	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AL359636.2	TCF7L2	+/.	+/.	chr9:122508157	chr10:113117455	intron	intron	translocation/5'-5'	0	0	0	0	254	low	.	.	.	.	.	ENSG00000234156.3	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025465.1	TUBB2A	-/.	-/.	chr5:124505746	chr6:3156856	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000248296.1	ENSG00000137267.7	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092332	chr11:88092443	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
GMCL2(6807),HNRNPAB(10355)	AL136979.1	./.	-/.	chr5:178194178	chr9:677771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000227914.3	.	.	downstream	downstream	mismatches(1)	.	.	.
AL136979.1	PTPRT	-/.	-/.	chr9:677771	chr20:42131998	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000227914.3	ENSG00000196090.12	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	.	./.	./.	chr2:218108703	GL000220.1:114266	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(9),uninteresting_contigs(2)	.	.	.
NOS1AP	LINC00499	+/.	+/.	chr1:162261531	chr4:138402531	intron	intron	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000251372.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AL136979.1	PITRM1(1014),AL451164.3(26974)	-/.	./.	chr9:677771	chr10:3173855	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000227914.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FECHP1(162381),KRT8P18(179470)	FECHP1(162420),KRT8P18(179431)	./.	./.	chr3:35036235	chr3:35036274	intergenic	intergenic	duplication/ITD	0	0	0	237	237	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(211),low_entropy(16)	.	.	.
AL022726.1(101771),AL008627.1(46470)	KANK1	./.	+/.	chr6:19995985	chr9:677771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107104.20	.	.	upstream	downstream	mismatches(1)	.	.	.
WASF2	AC105252.1(292284),AC079380.1(3754)	-/.	./.	chr1:27405694	chr4:133867492	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000158195.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3848),GPN2(7828)	./.	./.	chr1:26868243	chr1:26868304	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
CLIP2	FBXO28	+/+	+/+	chr7:74338512	chr1:224122600	CDS	intron	translocation	0	0	0	1	6	low	.	.	|F-box_domain(14%)	.	.	ENSG00000106665.16	ENSG00000143756.12	.	.	downstream	upstream	mismatches(2)	.	.	.
AC008269.1	AL121977.2	+/.	-/.	chr2:206862110	chr6:82363593	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000229321.2	ENSG00000286875.1	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA1549L	AP000821.1	+/.	-/.	chr11:33557935	chr11:126101058	intron	exon	inversion	0	0	0	6	0	low	.	.	.	.	.	ENSG00000110427.17	ENSG00000261257.1	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA0232	AC018765.1(20222),HPRT1P2(245014)	+/.	./.	chr4:6856546	chr5:30003336	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000170871.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NTNG2	.	+/.	./.	chr9:132201072	KI270728.1:1156693	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000196358.11	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SAPCD2P1(11260),ZNF735(12937)	LRRC4C	./.	-/.	chr7:64194153	chr11:41021155	intergenic	intron	translocation	0	0	0	78	1436	low	.	.	.	.	.	.	ENSG00000148948.8	.	.	upstream	upstream	low_entropy	.	.	.
KIAA0232	CYP3A4	+/.	-/.	chr4:6856546	chr7:99759539	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000170871.12	ENSG00000160868.15	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA0232	CYP3A7-CYP3A51P	+/.	-/.	chr4:6856546	chr7:99706823	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000170871.12	ENSG00000282301.4	.	.	downstream	downstream	mismatches(1)	.	.	.
GABPB2	AC073130.2	+/.	-/.	chr1:151087306	chr7:116255782	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143458.12	ENSG00000243243.5	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP98	DAAM1(45879),GPR135(11738)	-/.	./.	chr11:3702365	chr14:59417284	intron	intergenic	translocation	0	0	0	437	20	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396420	chr8:22396517	intron	intron	duplication/ITD	0	0	0	0	71	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298002	chr7:32298013	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
LINC00486	GSDMD	+/.	+/.	chr2:32916556	chr8:143557003	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000104518.11	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916407	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
TRAK1	CLN8	+/.	+/.	chr3:42201857	chr8:1799260	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000182606.17	ENSG00000182372.10	.	.	upstream	upstream	mismatches(1)	.	.	.
ROBO2	ROBO2	+/.	+/.	chr3:76256300	chr3:76256315	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000185008.17	ENSG00000185008.17	.	.	upstream	downstream	duplicates(10),low_entropy(3)	.	.	.
STPG2(33766),AC019077.1(74446)	MED15	./.	+/.	chr4:98177242	chr22:20548542	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000099917.17	.	.	upstream	upstream	mismatches(1)	.	.	.
TAOK1	AC012101.2	+/+	+/-	chr17:29390577	chr18:75459144	5'UTR	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000160551.12	ENSG00000287281.1	.	.	downstream	downstream	mismatches(1)	.	.	.
CANT1	FP671120.4	-/-	+/+	chr17:78995148	chr21:8214781	CDS	intron	translocation	0	0	0	8	2358	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	ENSG00000278996.1	.	.	upstream	upstream	mismatches	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078769	chr1:225078870	intron	intron	duplication	0	0	0	19	28	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	same_gene	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	.	./.	./.	chr3:95431525	KI270733.1:175791	intergenic	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LDB2	LDB2	-/.	-/.	chr4:16898832	chr4:16898902	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	ENSG00000169744.13	ENSG00000169744.13	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
SFRP1(2483),SNORD65B(114699)	AC121334.1(19777),AC121334.2(52459)	./.	./.	chr8:41311956	chr12:39487122	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC121334.1(19777),AC121334.2(52459)	AL355309.1(99987),RAC1P4(16222)	./.	./.	chr12:39487122	chrX:137425036	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL450426.1(19778),OR13C8(12196)	IQCH-AS1	./.	-/.	chr9:104556972	chr15:67307531	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259673.6	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683459	chr15:81683470	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL591222.3(128130),AL512635.1(235322)	TMEM132B	./.	+/.	chr9:20096124	chr12:125495237	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000139364.10	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE2W	LINC02870(38916),AL451069.1(20070)	-/.	./.	chr8:73820101	chr10:132488324	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	RNA5SP349(5010),SNORD39(137498)	-/.	./.	chr8:73820102	chr11:109125996	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380594	chr20:36380605	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NOS1	NOS1	-/.	-/.	chr12:117335730	chr12:117335771	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000089250.19	ENSG00000089250.19	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	SFRP1(2483),SNORD65B(114699)	./.	./.	chr3:103984260	chr8:41311956	intergenic	intergenic	translocation	0	0	0	6	7	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MFF-DT	RNA5SP349(5010),SNORD39(137498)	-/-	./+	chr2:227268528	chr11:109125996	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SFRP1(2483),SNORD65B(114699)	UBE2W	./.	-/.	chr8:41311956	chr8:73820102	intergenic	intron	inversion	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000104343.21	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFB9P3(84563),LINC01608(5539)	NRP1	./.	-/.	chr8:110894457	chr10:33334709	intergenic	5'UTR	translocation	0	0	0	3	15	low	.	.	.	.	.	.	ENSG00000099250.18	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	GTF2IRD1P1	-/.	-/.	chr7:117610	chr7:66824572	intron	intron	duplication	0	0	0	0	1	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000230583.7	.	.	upstream	downstream	mismatches(2)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683459	chr15:81683470	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
IL15(110186),INPP4B(178987)	SFRP1(2484),SNORD65B(114698)	./.	./.	chr4:141844173	chr8:41311957	intergenic	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IL15(110186),INPP4B(178987)	GSE1	./.	+/.	chr4:141844173	chr16:85583757	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	upstream	upstream	mismatches(1)	.	.	.
C10orf143	RNA5SP349(5010),SNORD39(137498)	-/.	./.	chr10:130103977	chr11:109125996	intron	intergenic	translocation	0	0	0	3	9	low	.	.	.	.	.	ENSG00000237489.5	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SQSTM1P1(123822),AL445668.1(8613)	GSE1	./.	+/.	chr13:62530738	chr16:85583756	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	downstream	upstream	mismatches(1)	.	.	.
FIP1L1	SAPCD2P1(11260),ZNF735(12937)	+/.	./.	chr4:53417822	chr7:64194153	intron	intergenic	translocation	0	0	0	3	78	low	.	.	.	.	.	ENSG00000145216.16	.	.	.	downstream	upstream	low_entropy	.	.	.
OLFM1	FP236383.3(1401),FP236383.11(6127)	+/.	./.	chr9:135087395	chr21:8456193	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130558.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SQSTM1P1(123822),AL445668.1(8613)	AL355309.1(99987),RAC1P4(16222)	./.	./.	chr13:62530738	chrX:137425036	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC25A12	SLC25A12	-/.	-/.	chr2:171938020	chr2:171938075	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000115840.14	ENSG00000115840.14	.	.	upstream	downstream	duplicates(10),low_entropy(9)	.	.	.
RBFA	RPTOR	+/+	+/-	chr18:80046832	chr17:80890509	3'UTR	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	Ribosome-binding_factor_A(100%)|	.	.	ENSG00000101546.13	ENSG00000141564.15	.	.	downstream	downstream	mismatches(1)	.	.	.
TFB1M	RNA5SP349(5010),SNORD39(137498)	-/.	./.	chr6:155280046	chr11:109125996	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000029639.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TFB1M	SFRP1(2483),SNORD65B(114699)	-/.	./.	chr6:155280046	chr8:41311956	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000029639.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNMB2	HDAC7	+/.	-/.	chr3:178655140	chr12:47810805	intron	intron	translocation/5'-5'	0	0	0	13	8	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000061273.18	.	.	downstream	upstream	duplicates(1)	.	.	.
AC073409.1(238207),ELOAP1(12650)	.	./.	./.	chr2:123682652	KI270733.1:148270	intergenic	intergenic	translocation	0	0	0	14	.	low	.	.	.	.	.	.	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	chr7:129531132	chr15:45463192	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8444474	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
FMN2	SFRP1(2483),SNORD65B(114699)	+/.	./.	chr1:240200874	chr8:41311956	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000155816.21	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FMN2	GSE1	+/.	+/.	chr1:240200874	chr16:85583756	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000155816.21	ENSG00000131149.19	.	.	downstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138642	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EXO1	SH3BP2	+/.	+/.	chr1:241860039	chr4:2827962	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174371.17	ENSG00000087266.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880814	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU1-154P(726),AC239860.2(27379)	RNU1-154P(735),AC239860.2(27370)	./.	./.	chr1:145432419	chr1:145432428	intergenic	intergenic	duplication/ITD	0	0	0	188	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
Z96074.1(205442),RN7SKP31(210129)	MT-RNR1	./.	+/.	chrX:138187222	chrM:1502	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
NXF2(27555),NXF2B(6119)	NXF2(27650),NXF2B(6024)	./.	./.	chrX:102354277	chrX:102354372	intergenic	intergenic	duplication/ITD	0	0	0	0	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396534	chr8:22396555	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765671	chr11:121765680	intron	intron	duplication/ITD	0	0	0	23	11	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479906	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	duplicates	.	.	.
AL392003.1(83163),RGS4(5819)	GALNT13	./.	+/.	chr1:163062956	chr2:153899212	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000144278.15	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683466	chr15:81683475	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
SLC35F3	SLC39A14	+/.	+/.	chr1:233948244	chr8:22396540	intron	intron	translocation	0	0	0	0	308	low	.	.	.	.	.	ENSG00000183780.13	ENSG00000104635.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00364(169407),AL512452.1(28223)	NTN5	./.	-/.	chr13:67549401	chr19:48668651	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000142233.14	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117367	chr10:113117380	intron	intron	duplication/ITD	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(19),low_entropy(11)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8448165	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
RNU1-154P(711),AC239860.2(27394)	RNU1-154P(764),AC239860.2(27341)	./.	./.	chr1:145432404	chr1:145432457	intergenic	intergenic	duplication/ITD	0	0	0	188	188	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
LINC00486	PIAS4	+/.	+/.	chr2:32916556	chr19:4020515	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000105229.7	.	.	downstream	downstream	mismatches	.	.	.
PAXBP1(77),C21orf62-AS1(231)	PAXBP1(176),C21orf62-AS1(132)	./.	./.	chr21:32771869	chr21:32771968	intergenic	intergenic	duplication/ITD	0	0	0	760	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
CADM2	MIR4300HG	+/.	-/.	chr3:85354619	chr11:82143176	intron	intron	translocation/3'-3'	0	0	0	0	719	low	.	.	.	.	.	ENSG00000175161.14	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
KLHL7-DT	AC025580.2	-/.	+/.	chr7:23104754	chr15:45462237	intron	intron	translocation/5'-5'	0	0	0	3	4	low	.	.	.	.	.	ENSG00000230658.2	ENSG00000259354.5	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864118	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC35F3	ZNF462	+/.	+/.	chr1:233948234	chr9:106864116	intron	intron	translocation/5'-5'	0	0	0	0	87	low	.	.	.	.	.	ENSG00000183780.13	ENSG00000148143.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AC006458.1(129546),AGMO(2120)	AC006458.1(129561),AGMO(2105)	./.	./.	chr7:15198197	chr7:15198212	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
SLC35F3	CYP2A7	+/.	-/.	chr1:233948236	chr19:40880795	intron	intron	translocation/5'-5'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000183780.13	ENSG00000198077.11	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8398039	intron	intron	translocation	0	0	0	1606	8	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
RNU7-66P(128430),AL591004.1(353074)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	chr6:66857334	chr21:8259021	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TASP1(26024),ESF1(49366)	TASP1(26067),ESF1(49323)	./.	./.	chr20:13664956	chr20:13664999	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DENND3(7421),SLC45A4(3937)	DENND3(7495),SLC45A4(3863)	./.	./.	chr8:141203229	chr8:141203303	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
WBP1LP4(21962),RPL23AP45(70963)	ARHGEF10	./.	+/.	chr5:181401000	chr8:1946622	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104728.16	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916405	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392889	chr10:104479906	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674824	chr5:20674833	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(7),low_entropy(1),merge_adjacent	.	.	.
DENND3(7497),SLC45A4(3861)	CYP2A6	./.	-/.	chr8:141203305	chr19:40848941	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000255974.8	.	.	downstream	upstream	mismatches(1)	.	.	.
DIRC3	DIRC3	-/.	-/.	chr2:217375388	chr2:217375397	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000231672.8	ENSG00000231672.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC124861.2(17618),AC124861.1(15534)	AC016026.1	./.	-/.	chr2:240212026	chr22:17796198	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000093100.13	.	.	downstream	upstream	mismatches(1)	.	.	.
DENND3(7466),SLC45A4(3892)	CYP2A7	./.	-/.	chr8:141203274	chr19:40880795	intergenic	intron	translocation	0	0	0	3	22	low	.	.	.	.	.	.	ENSG00000198077.11	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01198(14967),LRCH1(22243)	AC023034.1	./.	+/.	chr13:46530925	chr15:81565302	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336179	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16349),AC016134.1(9519)	./.	./.	chr15:41599884	chr15:41599938	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CSTP1	.	-/.	./.	chr20:23922329	KI270733.1:131005	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000228476.2	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SUPT5H	SUPT5H	+/+	+/+	chr19:39458244	chr19:39458236	exon	exon	duplication/ITD	0	0	0	6	6	low	.	.	Spt5_transcription_elongation_factor__acidic_N-terminal(28%)|Early_transcription_elongation_factor_of_RNA_pol_II__NGN_section(100%),KOW_motif(100%),Spt5_transcription_elongation_factor__acidic_N-terminal(71%)	.	.	ENSG00000196235.14	ENSG00000196235.14	.	.	downstream	upstream	duplicates(1),low_entropy(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021210	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(103),low_entropy(1),merge_adjacent	.	.	.
TMCO3(3191),TFDP1(26940)	TMCO3(3200),TFDP1(26931)	./.	./.	chr13:113557781	chr13:113557790	intergenic	intergenic	duplication/ITD	0	0	0	13	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC092506.1(281311),AL591888.1(490417)	AC092506.1(281382),AL591888.1(490346)	./.	./.	chr1:104507989	chr1:104508060	intergenic	intergenic	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
TMCO3(3189),TFDP1(26942)	CYP2A6	./.	-/.	chr13:113557779	chr19:40848941	intergenic	intron	translocation	0	0	0	13	0	low	.	.	.	.	.	.	ENSG00000255974.8	.	.	upstream	upstream	mismatches(1)	.	.	.
AC016694.1(51882),RBMY2WP(38110)	AC016694.1(51928),RBMY2WP(38064)	./.	./.	chrY:22724741	chrY:22724787	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(70),low_entropy(3),merge_adjacent	.	.	.
RPSAP2(46058),NOP56P1(4671)	RPSAP2(46104),NOP56P1(4625)	./.	./.	chr6:28778962	chr6:28779008	intergenic	intergenic	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SIM1	MIR17HG(30276),GPC5(13766)	-/.	./.	chr6:100458071	chr13:91384855	intron	intergenic	translocation	0	0	0	69	3	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MARS1	.	+/.	./.	chr12:57488235	KI270733.1:148230	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ZNF462	TMCO3(3222),TFDP1(26909)	+/.	./.	chr9:106864116	chr13:113557812	intron	intergenic	translocation	0	0	0	87	7	low	.	.	.	.	.	ENSG00000148143.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902253	chr4:94902264	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(17),low_entropy(1),merge_adjacent	.	.	.
LINC00486	BAIAP2	+/.	+/.	chr2:32916556	chr17:81059123	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000175866.15	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916559	KI270733.1:176218	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
CRACR2A	AP001347.1	-/.	+/.	chr12:3694604	chr21:14100748	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000130038.10	ENSG00000224905.7	.	.	upstream	downstream	mismatches(1)	.	.	.
NOS1AP	LMNTD1(20091),RN7SKP262(110617)	+/.	./.	chr1:162261517	chr12:25668670	intron	intergenic	translocation	0	0	0	59	10	low	.	.	.	.	.	ENSG00000198929.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPSAP2(46058),NOP56P1(4671)	RPSAP2(46115),NOP56P1(4614)	./.	./.	chr6:28778962	chr6:28779019	intergenic	intergenic	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864116	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
DISC1FP1	DISC1FP1	+/.	+/.	chr11:90866162	chr11:90866211	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000261645.7	ENSG00000261645.7	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
LINC02885(2304),ISX(60970)	LINC02885(2325),ISX(60949)	./.	./.	chr22:35005166	chr22:35005187	intergenic	intergenic	duplication/ITD	0	0	0	43	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	MIR4272(31119),AC114401.1(39654)	+/.	./.	chr2:32916556	chr3:67256646	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
MARS1	.	+/.	./.	chr12:57488235	GL000220.1:130060	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AL451061.1(55887),PLEKHG1(33696)	CACNA1I(6529),ENTHD1(46780)	./.	./.	chr6:150566187	chr22:39696264	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC132217.2	.	-/.	./.	chr11:2138067	KI270733.1:125836	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000284779.2	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ZNF462	AC087633.2	+/.	+/.	chr9:106864116	chr15:95080454	intron	intron	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000277654.6	.	.	downstream	upstream	mismatches(1)	.	.	.
SIM1	.	-/.	./.	chr6:100458035	KI270733.1:148270	intron	intergenic	translocation	0	0	0	69	.	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
AC132217.2	5_8S_rRNA(1962),FP236383.3(121748)	-/.	./.	chr11:2138068	chr21:8258895	intron	intergenic	translocation	0	0	0	0	47	low	.	.	.	.	.	ENSG00000284779.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331417	chr19:55331430	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262582	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765669	chr11:121765678	intron	intron	duplication/ITD	0	0	0	23	11	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683523	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
TRERF1	LMNTD1(20091),RN7SKP262(110617)	-/.	./.	chr6:42262572	chr12:25668670	intron	intergenic	translocation	0	0	0	3473	10	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PPIAP33(105450),AL354694.1(82278)	PPIAP33(105494),AL354694.1(82234)	./.	./.	chr9:7703827	chr9:7703871	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664203	chr19:30664257	intron	intron	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	low_entropy(2)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298008	chr7:32298016	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
PHF6(23321),HPRT1(8053)	PHF6(23336),HPRT1(8038)	./.	./.	chrX:134452112	chrX:134452127	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131139	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880795	chr19:40880814	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(9),low_entropy(3)	.	.	.
AC087633.2	CYP2A7	+/.	-/.	chr15:95080452	chr19:40880795	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000277654.6	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077781	chrX:11077790	intron	intron	duplication/ITD	0	0	0	28	24	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP003390.1(4402),AP001994.1(77279)	AP003390.1(4501),AP001994.1(77180)	./.	./.	chr11:119744025	chr11:119744124	intergenic	intergenic	duplication/ITD	0	0	0	1470	1348	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
GALNT13	CNOT6L	+/.	-/.	chr2:153899212	chr4:77738254	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	ENSG00000138767.13	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NUP54	CYP2A7	-/.	-/.	chr4:76125689	chr19:40880795	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000138750.15	ENSG00000198077.11	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02889	AC016820.1(173235),ZMIZ1-AS1(73071)	-/.	./.	chr7:17457184	chr10:78870257	exon	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000236039.3	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674399	chr7:35674459	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC148477.9(9438),AC148476.1(51718)	AC148477.9(9531),AC148476.1(51625)	./.	./.	chr12:132372786	chr12:132372879	intergenic	intergenic	duplication/ITD	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU6-521P(183175),AC007274.3(50635)	RNU6-521P(183190),AC007274.3(50620)	./.	./.	chrY:7606333	chrY:7606348	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077774	chrX:11077783	intron	intron	duplication/ITD	0	0	0	28	24	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IFIT2	IFIT2	+/.	+/.	chr10:89293680	chr10:89293715	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000119922.11	ENSG00000119922.11	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
MFSD1	MFSD1	+/.	+/.	chr3:158827892	chr3:158827975	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000118855.21	ENSG00000118855.21	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262489	chr6:42262498	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC108467.1(7074),THAP12P9(264527)	AC108467.1(7108),THAP12P9(264493)	./.	./.	chr4:45058726	chr4:45058760	intergenic	intergenic	duplication/ITD	0	0	0	223	223	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(212),low_entropy(11)	.	.	.
ADAMTS9-AS2	ALDH1L2	+/.	-/.	chr3:64736203	chr12:105046182	intron	intron	translocation/3'-3'	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000136010.14	.	.	upstream	downstream	duplicates(10)	.	.	.
DAPK1	.	+/.	./.	chr9:87564614	GL000220.1:116388	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000196730.13	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565363	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(9),low_entropy(7)	.	.	.
ADAMTS9-AS2	DTNBP1(65879),ARPC3P5(205845)	+/.	./.	chr3:64736203	chr6:15728937	intron	intergenic	translocation	0	0	0	974	654	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	upstream	duplicates(10)	.	.	.
STMN4(23462),TRIM35(3004)	INTS9	./.	-/.	chr8:27281882	chr8:28870755	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104299.15	.	.	upstream	upstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638061	chr7:116638076	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419203	chr14:106419214	exon	exon	duplication/ITD	0	0	0	0	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158220	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
CMAHP	CCDC70(14931),CTAGE3P(27055)	-/.	./.	chr6:25226641	chr13:51881163	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000168405.17	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6-521P(183177),AC007274.3(50633)	RNU6-521P(183192),AC007274.3(50618)	./.	./.	chrY:7606335	chrY:7606350	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MYRIP	MAMDC2	+/.	+/.	chr3:39832710	chr9:70108085	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000170011.14	ENSG00000165072.10	.	.	downstream	downstream	mismatches(1)	.	.	.
SFN(3791),GPN2(7885)	SFN(3852),GPN2(7824)	./.	./.	chr1:26868247	chr1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ASTN1	HIPK3	-/.	+/.	chr1:177027605	chr11:33258157	intron	intron	translocation	1	0	0	1	0	low	.	.	.	.	.	ENSG00000152092.16	ENSG00000110422.12	.	.	downstream	downstream	min_support	.	.	.
RABGAP1L-DT	TRERF1	-/.	-/.	chr1:174121817	chr6:42262472	intron	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
AL358033.1(24237),FTLP19(41256)	MT-RNR1	./.	+/.	chr10:16030160	chrM:1502	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
BAIAP2L1(188),PPIAP82(52841)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	chr7:98401278	chr21:8259021	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
CSK	SHANK2	+/+	-/+	chr15:74802960	chr11:71128697	3'UTR	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	Protein_kinase_domain(100%),SH2_domain(100%),SH3_domain(100%)|	.	.	ENSG00000103653.16	ENSG00000162105.20	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736256	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL356130.1(30315),LINC01622(19002)	LINC00326(25969),MTCYBP4(17189)	./.	./.	chr6:939321	chr6:133133379	intergenic	intergenic	inversion	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HRAS	FOXA3(2578),IRF2BP1(7233)	-/.	./.	chr11:535338	chr19:45876375	5'UTR	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000174775.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LHX9(23325),NEK7(198191)	IPMK	./.	-/.	chr1:197958803	chr10:58220196	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000151151.6	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736261	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC008798.2(31826),AC008798.1(28052)	AC008798.1(9216),AC008507.3(4777)	./.	./.	chr19:29873644	chr19:29911085	intergenic	intergenic	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DMD	Z83818.2	-/.	-/.	chrX:31138656	chrX:87716930	intron	intron	inversion/5'-5'	0	0	0	95	14	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000282914.1	.	.	upstream	upstream	mismatches(1)	.	.	.
SH3BP2	FRMD5	+/.	-/.	chr4:2827962	chr15:44009763	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087266.17	ENSG00000171877.21	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP700111.1	FBP1	+/.	-/.	chr1:144689686	chr9:94621628	intron	intron	translocation	0	0	0	3	14	low	.	.	.	.	.	ENSG00000224363.2	ENSG00000165140.11	.	.	downstream	downstream	mismatches(1)	.	.	.
PLA2G7	MORC4	-/.	-/.	chr6:46734429	chrX:106941412	intron	3'UTR	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262498	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479900	intron	intron	translocation/3'-3'	0	0	0	334	988	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	duplicates	.	.	.
COMETT	AC023034.1	-/.	+/.	chr7:116638129	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259594.6	.	.	downstream	upstream	low_entropy	.	.	.
DNAH14	AC010746.2(61296),NPM1P46(5665)	+/.	./.	chr1:225078870	chr2:197374036	intron	intergenic	translocation	0	0	0	28	3	low	.	.	.	.	.	ENSG00000185842.15	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916525	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1632	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
PLA2G7	MORC4	-/.	-/.	chr6:46734431	chrX:106941412	intron	3'UTR	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565343	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNAJC1	DNAJC1	-/.	-/.	chr10:21813145	chr10:21813221	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000136770.11	ENSG00000136770.11	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
AC092910.3	AC008083.2(60394),PPIAP45(2199)	+/.	./.	chr3:120125716	chr12:47339415	intron	intergenic	translocation	0	0	0	306	89	low	.	.	.	.	.	ENSG00000242622.2	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785781	chrX:106941412	intron	3'UTR	translocation	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
C16orf95	AC139365.1(221267),AC118650.1(2132946)	-/-	./-	chr16:87317152	chr8:43895858	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916409	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469917	chr7:26469926	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785680	chr2:101785779	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479815	chr10:104479824	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
SENP7(2929),FAM172BP(5721)	MIR4300HG	./.	-/.	chr3:101516170	chr11:82143176	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(2)	.	.	.
NEB(16252),ARL5A(38245)	MIR4300HG	./.	-/.	chr2:151750739	chr11:82143174	intergenic	intron	translocation	0	0	0	3	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15854),IL2RB(276)	./.	./.	chr22:37125511	chr22:37125567	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FBXO28	FBXO28	+/.	+/.	chr1:224122601	chr1:224122614	intron	intron	duplication/ITD	0	0	0	0	4	low	.	.	.	.	.	ENSG00000143756.12	ENSG00000143756.12	.	.	upstream	downstream	small_insert_size	.	.	.
LINC00486	SFI1	+/.	+/.	chr2:32916556	chr22:31490013	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000198089.16	.	.	downstream	upstream	mismatches	.	.	.
INSYN1-AS1(36542),AC018943.1(63794)	CA10	./.	-/.	chr15:73807155	chr17:51674667	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000154975.14	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAF	LINC00486	-/-	+/-	chr16:79599203	chr2:32916525	CDS	intron	translocation/5'-5'	0	0	0	3	1632	low	.	.	Maf_N-terminal_region(100%)|	.	.	ENSG00000178573.7	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
UNCX	AC016304.1(54225),TMCO5A(376611)	+/+	./-	chr7:1236840	chr15:37545328	CDS	intergenic	translocation	0	0	0	0	25	low	.	.	Homeodomain(100%)|	.	.	ENSG00000164853.9	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RABGAP1L-DT	MAP4K4	-/.	+/.	chr1:174121817	chr2:101785787	intron	intron	translocation	0	0	0	0	710	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000071054.16	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC7A10	SLC7A10(11380),AC008738.6(46748)	-/.	./.	chr19:33217934	chr19:33237230	intron	intergenic	deletion/read-through	0	0	0	2	0	low	.	.	.	.	.	ENSG00000130876.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RBFOX3	RBFOX3	-/.	-/.	chr17:79442204	chr17:79442281	intron	intron	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000167281.19	.	.	upstream	downstream	same_gene	.	.	.
RASGEF1B	LRAT	-/.	+/.	chr4:81709846	chr4:154635483	intron	intron	duplication/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000138670.18	ENSG00000121207.12	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785669	chr2:101785765	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785697	chr2:101785796	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	duplicates(1),low_entropy(4),merge_adjacent	.	.	.
NDRG2	MAP4K4	-/-	+/-	chr14:21021418	chr2:101785796	exon	intron	translocation/5'-5'	0	0	0	0	710	low	.	.	Ndr_family(34%)|	.	.	ENSG00000165795.23	ENSG00000071054.16	.	.	upstream	downstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638068	chr7:116638077	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734416	chr6:46734503	intron	intron	duplication/ITD	0	0	0	49	33	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565298	chr15:81565307	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16358),AC016134.1(9510)	./.	./.	chr15:41599880	chr15:41599947	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565296	chr15:81565305	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
DLG2	LINC02864	-/.	-/.	chr11:85484188	chr18:73168245	intron	intron	translocation/5'-5'	0	0	0	62	0	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000263711.6	.	.	upstream	upstream	mismatches(1)	.	.	.
DCHS2(5230),AC110753.1(26458)	AC112200.1(5276),ANKRD33B(1979)	./.	./.	chr4:154497029	chr5:10562091	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC00486	AL591022.1(133426),AL096861.1(56417)	+/.	./.	chr2:32916556	chrX:147419907	intron	intergenic	translocation	0	0	0	1606	8	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
OR4F5(12222),AL627309.1(5488)	ARHGEF10	./.	+/.	chr1:83807	chr8:1946622	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104728.16	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092266.1(372),LSINCT5(450196)	AC092266.1(420),LSINCT5(450148)	./.	./.	chr5:2262395	chr5:2262443	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785686	chr2:101785785	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(3)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143098	chr11:82143106	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MFSD1	MFSD1	+/.	+/.	chr3:158827892	chr3:158827965	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000118855.21	ENSG00000118855.21	.	.	upstream	downstream	duplicates(1)	.	.	.
RABGAP1L-DT	MAP4K4	-/.	+/.	chr1:174121817	chr2:101785783	intron	intron	translocation	0	0	0	0	710	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000071054.16	.	.	downstream	downstream	mismatches(1)	.	.	.
SH3TC1	FP671120.4	+/+	+/+	chr4:8227971	chr21:8214689	CDS	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	ENSG00000125089.17	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785761	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565298	chr15:81565307	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	UBE2Q2P1	-/.	-/.	chr6:42262467	chr15:84566885	intron	intron	translocation/5'-5'	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000189136.9	.	.	upstream	upstream	mismatches(1)	.	.	.
PGAM4P2(38320),KRT18P21(117568)	NUP98	./.	-/.	chr4:115803139	chr11:3702361	intergenic	intron	translocation	0	0	0	18	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ASAP1	TYRO3(16366),AC016134.1(9502)	-/.	./.	chr8:130071018	chr15:41599955	intron	intergenic	translocation	0	0	0	16	186	low	.	.	.	.	.	ENSG00000153317.15	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565304	chr15:81565313	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AC126544.2(3620),AC126544.1(622)	MYH9	./.	-/.	chr17:45591999	chr22:36357561	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000100345.22	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262490	chr6:42262499	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(29)	.	.	.
NUP98	XRCC6P2(77100),MAMLD1(51426)	-/.	./.	chr11:3702368	chrX:150309996	intron	intergenic	translocation	0	0	0	437	3	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	downstream	duplicates(9),mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626660	chrX:18626677	intron	intron	duplication/ITD	0	0	0	83	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
EFNB2(4673),ARGLU1(1338)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr13:106540335	chr15:29674126	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262470	chr6:42262481	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469923	chr7:26469932	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
NTRK1	NTRK1	+/.	+/.	chr1:156817041	chr1:156817060	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000198400.13	ENSG00000198400.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
GDA	WAC	+/.	+/.	chr9:72149990	chr10:28533541	intron	5'UTR	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000119125.17	ENSG00000095787.24	.	.	downstream	upstream	mismatches(1)	.	.	.
AL136456.1	NTRK3	+/.	-/.	chr1:193977263	chr15:87905992	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227240.2	ENSG00000140538.16	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481710	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674875	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RABGAP1L-DT	TRERF1	-/.	-/.	chr1:174121817	chr6:42262470	intron	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22672),NRXN3(87423)	FXNP1(22771),NRXN3(87324)	./.	./.	chr14:78082950	chr14:78083049	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479904	intron	intron	duplication	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262500	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	NDUFB9P3(84563),LINC01608(5539)	-/.	./.	chr7:117610	chr8:110894457	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	upstream	mismatches(2)	.	.	.
C11orf95	AC016304.1(54229),TMCO5A(376607)	-/-	./-	chr11:63768668	chr15:37545332	5'UTR	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000188070.9	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01278	.	-/.	./.	chrX:63433600	KI270733.1:176084	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000235437.8	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916407	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
Z98755.1(226333),AL591387.1(352905)	Z98755.1(226348),AL591387.1(352890)	./.	./.	chr6:103230230	chr6:103230245	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MDH2	LINC00486	+/+	+/-	chr7:76049004	chr2:32916400	3'UTR	intron	translocation/5'-5'	0	0	0	1	275	low	.	.	.	.	.	ENSG00000146701.12	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106231146	chr14:106231155	exon	exon	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092443	chr21:8220959	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484568	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916409	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
C11orf58	SOX6	+/.	-/.	chr11:16721498	chr11:16721513	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000110696.10	ENSG00000110693.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479803	chr10:104479892	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916411	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
EML1	EML1	+/.	+/.	chr14:99796190	chr14:99796203	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
VPS54(36311),AC012368.2(30614)	LINC01958(31873),RPLP0P7(50174)	./.	./.	chr2:64055739	chr2:156727532	intergenic	intergenic	inversion	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150866	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(13),low_entropy(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916412	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670912	chr2:23670981	intron	intron	duplication/3'-3'	0	0	0	25	25	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916400	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
AC090946.1(73622),GALNT15(129805)	AC090946.1(73631),GALNT15(129796)	./.	./.	chr3:16044875	chr3:16044884	intergenic	intergenic	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FAM9B	FAM9B	-/.	-/.	chrX:9089550	chrX:9089605	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000177138.17	ENSG00000177138.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PLD5(20082),AC099785.1(126361)	PLD5(20091),AC099785.1(126352)	./.	./.	chr1:242544779	chr1:242544788	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
NR5A1	.	-/-	./-	chr9:124507410	GL000220.1:158104	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ANKIB1	AL512357.1(3821),RNU6-684P(18171)	+/.	./.	chr7:92347615	chr14:104382772	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000001629.10	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262471	chr6:42262480	intron	intron	duplication/ITD	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
AGBL3	AP003390.1(4500),AP001994.1(77181)	+/.	./.	chr7:135111985	chr11:119744123	intron	intergenic	translocation	0	0	0	0	1348	low	.	.	.	.	.	ENSG00000146856.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4499),AP001994.1(77182)	ASS1P4(31040),SNORA48B(132695)	./.	./.	chr11:119744122	chrX:3399422	intergenic	intergenic	translocation	0	0	0	1348	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262473	chr6:42262482	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(8),merge_adjacent	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683468	chr15:81683477	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
IGH@-ext	AL078622.1(96550),Z82202.2(17322)	-/.	./.	chr14:105867114	chr22:49149099	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	IGH.g@-ext	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114471	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC023034.1	UBE2FP2(4909),AC138305.1(128284)	+/.	./.	chr15:81683524	chr16:63185980	intron	intergenic	translocation	0	0	0	149	35	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	downstream	downstream	low_entropy	.	.	.
AC121334.1(19777),AC121334.2(52459)	GSE1	./.	+/.	chr12:39487122	chr16:85583756	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	downstream	upstream	mismatches(1)	.	.	.
TPTE2P1(13480),RPL34P27(6610)	.	./.	./.	chr13:24981967	KI270733.1:176193	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:116703	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
CRYBB2	CRYBB2	+/.	+/.	chr22:25218683	chr22:25218780	intron	intron	duplication/ITD	0	0	0	0	19	low	.	.	.	.	.	ENSG00000244752.3	ENSG00000244752.3	.	.	upstream	downstream	duplicates(12),low_entropy(6)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392891	chr11:88092435	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
CENPF(47063),GAPDHP24(159100)	SLC6A14	./.	+/.	chr1:214711634	chrX:116445508	intergenic	intron	translocation	0	0	0	1	687	low	.	.	.	.	.	.	ENSG00000268104.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025183.1(1849),LINC02116(2624)	NXPH3	./.	+/.	chr5:1853346	chr17:49576096	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182575.8	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864104	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(5)	.	.	.
FP671120.4	.	+/.	./.	chr21:8216920	GL000220.1:116388	intron	intergenic	translocation	0	0	0	603	.	low	.	.	.	.	.	ENSG00000278996.1	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131327	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
RSRC1	RSRC1	+/.	+/.	chr3:158106570	chr3:158106585	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000174891.13	ENSG00000174891.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC25A20	SLC25A20	-/.	-/.	chr3:48894184	chr3:48894199	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000178537.10	ENSG00000178537.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
SMAGP	SMAGP	-/.	-/.	chr12:51248435	chr12:51248448	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000170545.17	ENSG00000170545.17	.	.	upstream	downstream	duplicates(13),low_entropy(1)	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336115	chr7:43336200	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
DENND3(7421),SLC45A4(3937)	DENND3(7497),SLC45A4(3861)	./.	./.	chr8:141203229	chr8:141203305	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC00624(23210),BCL9(416)	LINC00624(23303),BCL9(323)	./.	./.	chr1:147541085	chr1:147541178	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
LINC00316(21890),MTCO1P3(12311)	.	./.	./.	chr21:45363880	KI270733.1:176187	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC012060.1(92676),LINC02248(36443)	.	./.	./.	chr15:26358594	GL000008.2:99913	intergenic	intergenic	translocation	0	0	0	4	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FYB2	.	-/.	./.	chr1:56742060	GL000220.1:114149	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000187889.13	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AP005242.4(3763),AP005242.2(6977)	AP005242.4(3808),AP005242.2(6932)	./.	./.	chr18:14996998	chr18:14997043	intergenic	intergenic	duplication/ITD	0	0	0	43	43	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(7)	.	.	.
KDM6B	.	+/.	./.	chr17:7852758	KI270733.1:131120	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132510.11	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SELENOK(87724),AC115282.2(54302)	SELENOK(87763),AC115282.2(54263)	./.	./.	chr3:53979686	chr3:53979725	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CDC27P1(18615),AC097532.1(4138)	U95743.1(127345),ERCC4(13049)	./.	./.	chr2:132281657	chr16:13907105	intergenic	intergenic	translocation	0	0	0	2	10	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TAB2(11980),ZC3H12D(23202)	TAB2(11989),ZC3H12D(23193)	./.	./.	chr6:149423593	chr6:149423602	intergenic	intergenic	duplication/ITD	0	0	0	295	295	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	SLC39A14	./.	+/.	chr7:39505425	chr8:22396563	intergenic	intron	translocation	0	0	0	23	295	low	.	.	.	.	.	.	ENSG00000104635.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AC108734.3	AC108734.3	-/.	-/.	chr3:180816217	chr3:180816262	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000285336.1	ENSG00000285336.1	.	.	upstream	downstream	duplicates(9),low_entropy(7)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092445	chr21:8220958	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
POR	SUMF1	+/+	-/-	chr7:75984863	chr3:4453332	CDS	intron	translocation	0	0	0	1	2	low	.	.	FAD_binding_domain(49%),Flavodoxin(100%)|Sulfatase-modifying_factor_enzyme_1(99%)	.	.	ENSG00000127948.16	ENSG00000144455.14	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702320	chr11:3702328	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00402(27374),AL353660.1(720)	LINC00402(27389),AL353660.1(705)	./.	./.	chr13:74287350	chr13:74287365	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
ATP2B2	MYO18A	-/-	-/+	chr3:10449762	chr17:29085035	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157087.20	ENSG00000196535.17	.	.	upstream	upstream	mismatches(1)	.	.	.
NCAM1	NCAM1	+/.	+/.	chr11:113025778	chr11:113025793	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000149294.17	ENSG00000149294.17	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236834	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
TTC4	TTC4	+/.	+/.	chr1:54736176	chr1:54736191	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000243725.7	ENSG00000243725.7	.	.	upstream	downstream	duplicates(8),low_entropy(9)	.	.	.
IGSF9B	.	-/.	./.	chr11:133918828	GL000220.1:116457	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000080854.16	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NDUFA5P10(12686),LINC01768(4671)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	chr1:109823684	chr21:8259021	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
APCDD1L-DT	APCDD1L-DT	+/.	+/.	chr20:58590223	chr20:58590232	intron	intron	duplication/ITD	0	0	0	21	10	low	.	.	.	.	.	ENSG00000231290.6	ENSG00000231290.6	.	.	upstream	downstream	duplicates(8),low_entropy(6)	.	.	.
AC117383.1	AC124947.1	-/.	-/.	chr3:141268207	chr12:93375497	intron	intron	translocation	0	0	0	9	30	low	.	.	.	.	.	ENSG00000249417.1	ENSG00000257252.6	.	.	downstream	upstream	mismatches(1)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	chr1:201702673	chr1:201702684	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000231871.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
FLJ31356	AC102941.2(4644),AC022613.1(864)	-/.	./.	chr2:28394136	chr15:29674126	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000229951.5	.	.	.	upstream	upstream	mismatches	.	.	.
PTGR1	CFAP58	-/.	+/.	chr9:111561018	chr10:104396381	intron	intron	translocation/3'-3'	0	0	0	0	217	low	.	.	.	.	.	ENSG00000106853.20	ENSG00000120051.15	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2089),FP236383.3(121621)	+/.	./.	chr2:32916556	chr21:8259022	intron	intergenic	translocation	0	0	0	1606	35	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
OXGR1(137594),LINC00456(36427)	OXGR1(137603),LINC00456(36418)	./.	./.	chr13:97132324	chr13:97132333	intergenic	intergenic	duplication/ITD	0	0	0	12	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CTSO(48329),FTH1P21(4237)	ANGPT1	./.	-/.	chr4:156002241	chr8:107291889	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000154188.10	.	.	downstream	upstream	mismatches	.	.	.
TNR	TNR	-/.	-/.	chr1:175517008	chr1:175517058	intron	intron	duplication/ITD	0	0	0	27	27	low	.	.	.	.	.	ENSG00000116147.17	ENSG00000116147.17	.	.	upstream	downstream	duplicates(14),low_entropy(4)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	.	./.	./.	chr3:95431525	GL000220.1:157828	intergenic	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	chr10:80511718	chr10:80511727	intron	intron	duplication/ITD	0	0	0	39	39	low	.	.	.	.	.	ENSG00000108219.15	ENSG00000108219.15	.	.	upstream	downstream	low_entropy(2)	.	.	.
GEMIN8(106769),UBE2E4P(107720)	GEMIN8(106830),UBE2E4P(107659)	./.	./.	chrX:14136662	chrX:14136723	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
OTX2P1(77429),PCSK5(88640)	OTX2P1(77440),PCSK5(88629)	./.	./.	chr9:75802004	chr9:75802015	intergenic	intergenic	duplication/ITD	0	0	0	24	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMSB4X(48863),FAM9C(9527)	TMSB4X(48907),FAM9C(9483)	./.	./.	chrX:13026090	chrX:13026134	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679805	chr21:39679875	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(29),low_entropy(12)	.	.	.
LINC01592	NKILA(41152),AL162291.1(141462)	-/.	./.	chr8:68940496	chr20:57753932	intron	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	ENSG00000253658.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PKNOX2	AC060809.1	+/+	+/+	chr11:125411520	chr15:81565298	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259543.1	.	.	downstream	upstream	mismatches	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396496	chr8:22396594	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
NUP98	DAAM1(45879),GPR135(11738)	-/.	./.	chr11:3702363	chr14:59417284	intron	intergenic	translocation	0	0	0	437	20	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
INPP5D	FOXRED2	+/.	-/.	chr2:233117636	chr22:36490592	intron	intron	translocation/5'-5'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000100350.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683460	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916507	chr21:8214784	intron	intron	translocation	0	0	0	1644	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
C6orf223	NLGN4X(25354),MIR4770(129685)	+/+	./-	chr6:44004040	chrX:6254221	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000181577.16	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C1orf194	SIM1	-/.	-/.	chr1:109113432	chr6:100458071	intron	intron	translocation/3'-3'	0	0	0	8	69	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000112246.10	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092437	intron	intron	duplication	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392887	chr11:88092445	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
CDH18	CDH18	-/.	-/.	chr5:19994733	chr5:19994793	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000145526.12	ENSG00000145526.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565342	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683460	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CA5A	HECTD4	-/-	-/-	chr16:87891850	chr12:112169625	CDS	CDS	translocation	0	0	0	4	0	low	.	.	Eukaryotic-type_carbonic_anhydrase(78%)|HECT-domain_(ubiquitin-transferase)(100%)	.	.	ENSG00000174990.8	ENSG00000173064.13	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMEM200A	FAM120C	+/.	-/.	chr6:130429090	chrX:54085829	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000164484.12	ENSG00000184083.12	.	.	upstream	downstream	mismatches(1)	.	.	.
PDCD4	MPPED2	+/.	-/.	chr10:110896212	chr11:30586257	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150593.18	ENSG00000066382.17	.	.	upstream	downstream	mismatches(1)	.	.	.
GLRA3	AP003071.2(33570),MYEOV(89017)	-/.	./.	chr4:174639430	chr11:69205134	3'UTR	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000145451.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683460	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
GRPEL2P1(60312),AL162573.1(102703)	GRPEL2P1(60358),AL162573.1(102657)	./.	./.	chr13:89039097	chr13:89039143	intergenic	intergenic	duplication/ITD	0	0	0	14	20	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736264	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
A2MP1	MAPK8IP1P1(9493),AC005829.2(5014)	-/.	./.	chr12:9236103	chr17:46254537	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000256069.7	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396389	chr10:104396398	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
BTF3L4P3(15636),AL356234.2(97990)	HNRNPA2B1	./.	-/.	chr6:137560008	chr7:26200229	intergenic	exon	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000122566.22	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22666),NRXN3(87429)	FXNP1(22677),NRXN3(87418)	./.	./.	chr14:78082944	chr14:78082955	intergenic	intergenic	duplication/ITD	0	0	0	455	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC108103.1(240195),C5orf17(21767)	AC108103.1(240235),C5orf17(21727)	./.	./.	chr5:23929581	chr5:23929621	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC00486	5_8S_rRNA(2182),FP236383.3(121528)	+/.	./.	chr2:32916556	chr21:8259115	intron	intergenic	translocation	0	0	0	1606	52	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092441	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
KANK1	PITRM1(1014),AL451164.3(26974)	+/.	./.	chr9:677771	chr10:3173855	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000107104.20	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC021028.1(1303),SH2D4B(657)	DOC2A	./.	-/.	chr10:80537245	chr16:30010997	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149927.18	.	.	upstream	downstream	mismatches(1)	.	.	.
POFUT2	MIR1303(4926),Y_RNA(14839)	-/-	./-	chr21:45267503	chr5:154690787	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	GDP-fucose_protein_O-fucosyltransferase(94%)|	.	.	ENSG00000186866.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702366	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143164	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01503	.	+/.	./.	chr9:129355193	KI270733.1:176196	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000233901.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
C1QTNF12	PCSK6	-/.	-/.	chr1:1245901	chr15:101358825	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	ENSG00000140479.18	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGEF18	AC008798.2(31826),AC008798.1(28052)	+/.	./.	chr19:7385854	chr19:29873644	intron	intergenic	duplication	0	0	0	20	0	low	.	.	.	.	.	ENSG00000104880.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MARK1	FP236383.3	+/.	+/.	chr1:220591888	chr21:8397826	intron	intron	translocation/3'-3'	0	0	0	0	450	low	.	.	.	.	.	ENSG00000116141.17	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025470.2	SLC2A6(8615),MYMK(26844)	+/.	./.	chr5:57533339	chr9:133487742	exon	intergenic	translocation	0	0	0	6	9	low	.	.	.	.	.	ENSG00000250961.2	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
PPM1B	AC025039.1(485228),MIR3924(223220)	+/+	./+	chr2:44169103	chr10:57081259	5'UTR	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000138032.21	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC25A21	SLC25A21	-/.	-/.	chr14:36753920	chr14:36753933	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000183032.12	ENSG00000183032.12	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193781	chr12:16193841	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117389	chr10:113117398	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
NDUFA5P10(12686),LINC01768(4671)	FP236383.3	./.	+/.	chr1:109823684	chr21:8397826	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
GBE1	GBE1	-/.	-/.	chr3:81547619	chr3:81547674	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000114480.13	ENSG00000114480.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
RUFY4(18122),CXCR2(16586)	DIP2A(27618),S100B(971)	./.	./.	chr2:218108703	chr21:46597633	intergenic	intergenic	translocation	0	0	0	125	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
ZNF462	MRE11	+/.	-/.	chr9:106864102	chr11:94419495	intron	3'UTR	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000020922.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AC132217.2	FP671120.4	-/.	+/.	chr11:2138067	chr21:8209536	intron	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000284779.2	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092651.2	AC092651.2	+/.	+/.	chr2:87105967	chr2:87106030	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000287931.1	ENSG00000287931.1	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
H3C10	UBE2W	+/.	-/.	chr6:27810928	chr8:73820101	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828.1	ENSG00000104343.21	.	.	upstream	upstream	mismatches(1)	.	.	.
PROM1(9731),AC108063.2(20124)	PROM1(9791),AC108063.2(20064)	./.	./.	chr4:16094109	chr4:16094169	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	RPL12P4(19717),LINC01440(314041)	./.	./.	chr1:188690471	chr20:55094857	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298004	chr7:32298013	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(17),low_entropy(10)	.	.	.
CRYBB2	CRYBB2	+/.	+/.	chr22:25218683	chr22:25218774	intron	intron	duplication/ITD	0	0	0	0	19	low	.	.	.	.	.	ENSG00000244752.3	ENSG00000244752.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864106	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BNC2	BNC2	-/-	-/-	chr9:16412702	chr9:16412758	3'UTR	3'UTR	duplication/ITD	0	0	0	21	21	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068.18	ENSG00000173068.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
AK4	CMAHP	+/.	-/.	chr1:65171029	chr6:25226641	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162433.15	ENSG00000168405.17	.	.	upstream	downstream	mismatches(1)	.	.	.
NXF2(6010),NXF2B(27664)	NXF2(6025),NXF2B(27649)	./.	./.	chrX:102332732	chrX:102332747	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(7)	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702362	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(14)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114472	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785773	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664206	chr19:30664219	intron	intron	duplication/ITD	0	0	0	35	0	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FBP1	ARSG	-/.	+/.	chr9:94621628	chr17:68291356	intron	intron	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000165140.11	ENSG00000141337.13	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	EML1	+/.	+/.	chr3:64736203	chr14:99796199	intron	intron	translocation/3'-3'	0	0	0	974	1790	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000066629.18	.	.	upstream	upstream	duplicates(10)	.	.	.
AC119501.1(32676),AL109741.1(12013)	AC119501.1(32693),AL109741.1(11996)	./.	./.	chr1:101223670	chr1:101223687	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
FO393413.1(58401),RNU7-65P(12605)	FO393413.1(58412),RNU7-65P(12594)	./.	./.	chr6:49332195	chr6:49332206	intergenic	intergenic	duplication/ITD	0	0	0	13	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
DHFR	.	-/.	./.	chr5:80650927	KI270733.1:130721	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
REST	.	+/.	./.	chr4:56908633	GL000220.1:127651	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000084093.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ARHGEF6	ARHGEF6	-/.	-/.	chrX:136729006	chrX:136729015	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000129675.16	ENSG00000129675.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	AC099520.1	+/.	-/.	chr2:32916556	chr5:104757080	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000251574.8	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262578	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
TMEM105(3173),AC027601.5(5336)	TGIF1	./.	+/.	chr17:81333847	chr18:3452453	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000177426.22	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	C12orf45	+/.	+/.	chr3:64736203	chr12:105046182	intron	intron	translocation	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000151131.11	.	.	upstream	downstream	duplicates(10)	.	.	.
NXF2(6005),NXF2B(27669)	NXF2(6059),NXF2B(27615)	./.	./.	chrX:102332727	chrX:102332781	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143158	intergenic	intron	translocation	0	0	0	0	748	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
PSD3	AP001599.1	-/.	+/.	chr8:19013885	chr21:26914103	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000156011.17	ENSG00000223563.1	.	.	downstream	downstream	mismatches(1)	.	.	.
NXF2(27602),NXF2B(6072)	NXF2(27613),NXF2B(6061)	./.	./.	chrX:102354324	chrX:102354335	intergenic	intergenic	duplication/ITD	0	0	0	55	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
TMEM19	TMEM19	+/.	+/.	chr12:71698608	chr12:71698621	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000139291.14	ENSG00000139291.14	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC135726.1(9988),AC006236.1(16245)	AC135726.1(10046),AC006236.1(16187)	./.	./.	chr17:5714044	chr17:5714102	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(6)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916571	chr21:8397818	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8397817	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262469	chr6:42262478	intron	intron	duplication/ITD	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
LINC00486	NUFIP2	+/.	-/.	chr2:32916556	chr17:29292869	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000108256.9	.	.	downstream	upstream	mismatches	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262488	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02884	TRERF1	-/.	-/.	chr1:112248892	chr6:42262467	intron	intron	translocation/5'-5'	0	0	0	0	3576	low	.	.	.	.	.	ENSG00000231246.2	ENSG00000124496.12	.	.	upstream	upstream	duplicates(1),mismatches(4)	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521069	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC106901.1(79727),AC016903.1(10557)	ADAMTS9-AS2	./.	+/.	chr2:204459519	chr3:64736203	intergenic	intron	translocation	0	0	0	60	974	low	.	.	.	.	.	.	ENSG00000241684.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	RN7SL98P(895),FTH1P12(157)	+/.	./.	chr2:32916556	chr9:15526976	intron	intergenic	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
VPS54(36311),AC012368.2(30614)	EXOC6	./.	+/.	chr2:64055739	chr10:92968703	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000138190.17	.	.	upstream	downstream	mismatches(1)	.	.	.
AC002463.1	FP671120.4	+/.	+/.	chr7:112751479	chr21:8217333	intron	intron	translocation/3'-3'	0	0	0	22	4	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC25A12	HAT1	-/.	+/.	chr2:171938020	chr2:171938075	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000115840.14	ENSG00000128708.13	.	.	upstream	downstream	duplicates(10),low_entropy(9)	.	.	.
AC092910.3	DAZAP2	+/.	+/.	chr3:120125713	chr12:51248435	intron	intron	translocation/3'-3'	0	0	0	306	16	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000183283.16	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092333	chr11:88092432	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785711	chr2:101785797	intron	intron	duplication/ITD	0	0	0	765	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	small_insert_size	.	.	.
TPBG	GDA	+/.	+/.	chr6:82363593	chr9:72149990	intron	intron	translocation/5'-5'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000146242.9	ENSG00000119125.17	.	.	downstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138640	intron	intron	duplication/ITD	0	0	0	95	0	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(49),low_entropy(16)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565348	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC008269.1	TPBG	+/.	+/.	chr2:206862110	chr6:82363593	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000229321.2	ENSG00000146242.9	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125706	chr3:120125755	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(260),low_entropy(18)	.	.	.
AL356157.1(162175),TMEM72-AS1(28840)	AL356157.1(162188),TMEM72-AS1(28827)	./.	./.	chr10:44764279	chr10:44764292	intergenic	intergenic	duplication/ITD	0	0	0	17	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL355095.1(22477),AL359238.1(198408)	AL355095.1(22490),AL359238.1(198395)	./.	./.	chr14:82818698	chr14:82818711	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SFN(3791),GPN2(7885)	SFN(3850),GPN2(7826)	./.	./.	chr1:26868247	chr1:26868306	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CTNNA2	CTNNA2	+/.	+/.	chr2:79384373	chr2:79384433	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000066032.19	ENSG00000066032.19	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916546	chr21:8259013	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308670	chr3:19308679	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
H4-16	.	-/.	./.	chr12:14769961	KI270733.1:126857	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197837.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674820	chr5:20674829	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143113	chr11:82143122	intron	intron	duplication/ITD	0	0	0	748	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RHBDF1(353),MPG(299)	.	./.	./.	chr16:76708	GL000220.1:114258	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
HECW1	TPT1P14(48516),RPL35AP37(90458)	+/.	./.	chr7:43336187	chrX:15026979	intron	intergenic	translocation	0	0	0	38	121	low	.	.	.	.	.	ENSG00000002746.15	.	.	.	downstream	upstream	duplicates(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	FP671120.4	./.	+/.	chr3:103984260	chr21:8214781	intergenic	intron	translocation	0	0	0	6	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
SAPCD2P1(11261),ZNF735(12936)	SAPCD2P1(11278),ZNF735(12919)	./.	./.	chr7:64194154	chr7:64194171	intergenic	intergenic	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC016694.1(51876),RBMY2WP(38116)	AC016694.1(51928),RBMY2WP(38064)	./.	./.	chrY:22724735	chrY:22724787	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),merge_adjacent	.	.	.
RHBDF1(353),MPG(299)	.	./.	./.	chr16:76708	KI270733.1:131114	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
WWTR1	WWTR1	-/.	-/.	chr3:149656750	chr3:149656794	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000018408.15	ENSG00000018408.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC9C1	MT-RNR1	-/.	+/.	chr3:112153433	chrM:1503	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000172139.15	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820101	GL000220.1:160777	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RHBDF1(353),MPG(299)	FP236383.3	./.	+/.	chr16:76708	chr21:8397826	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902256	chr4:94902265	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(7)	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797735	chr17:57797748	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
TRDN	GHRH(6786),MANBAL(21038)	-/.	./.	chr6:123573888	chr20:37268600	intron	intergenic	translocation	0	1	0	0	0	low	.	.	.	.	.	ENSG00000186439.14	.	.	.	upstream	downstream	min_support	.	.	.
AC093898.1	.	+/.	./.	chr4:18644544	GL000220.1:160429	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000286046.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LONRF1	LRRC25(7376),SSBP4(13866)	-/.	./.	chr8:12754256	chr19:18404998	5'UTR	intergenic	translocation	1	0	0	1	0	low	.	.	.	.	.	ENSG00000154359.13	.	.	.	downstream	downstream	min_support	.	.	.
SAPCD2P1(11260),ZNF735(12937)	SAPCD2P1(11313),ZNF735(12884)	./.	./.	chr7:64194153	chr7:64194206	intergenic	intergenic	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
LCK	LCK	+/.	+/.	chr1:32272600	chr1:32272609	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000182866.17	ENSG00000182866.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZFP69B	LINC00486	+/.	+/.	chr1:40451664	chr2:32916556	intron	intron	translocation/5'-5'	0	0	0	2	1606	low	.	.	.	.	.	ENSG00000187801.15	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
AL356130.1(30315),LINC01622(19002)	PTPRE	./.	+/.	chr6:939321	chr10:127960321	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000132334.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025366.1(57830),AP005357.1(76639)	NRP1	./.	-/.	chr8:110690224	chr10:33334709	intergenic	5'UTR	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000099250.18	.	.	upstream	downstream	mismatches(1)	.	.	.
SH3TC1	5_8S_rRNA(1979),FP236383.3(121731)	+/+	./+	chr4:8227971	chr21:8258912	CDS	intergenic	translocation	0	0	0	7	101	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	downstream	upstream	mismatches	.	.	.
NRP1	AC022748.2	-/.	+/.	chr10:33334709	chr15:78672957	5'UTR	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000099250.18	ENSG00000261303.6	.	.	downstream	downstream	mismatches(1)	.	.	.
AL359854.1(54184),LINC01278(80145)	AL359854.1(54253),LINC01278(80076)	./.	./.	chrX:63142848	chrX:63142917	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GDF7	LINC00486	+/+	+/-	chr2:20667387	chr2:32916597	CDS	intron	inversion/3'-3'	0	0	0	3	46	low	.	.	.	.	.	ENSG00000143869.7	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
AC020741.1	NRP1	-/-	-/-	chr4:61428174	chr10:33334709	exon	5'UTR	translocation	0	0	0	0	15	low	.	.	|C-terminal_domain_of_neuropilin_glycoprotein(100%),CUB_domain(100%),F5/8_type_C_domain(100%),MAM_domain__meprin/A5/mu(100%)	.	.	ENSG00000205682.2	ENSG00000099250.18	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565345	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
KCNMB2	KCNMB2-AS1	+/.	-/.	chr3:178655098	chr3:178655107	intron	intron	duplication/3'-3'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000237978.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
CAPNS1	LINC00486	+/+	+/-	chr19:36141147	chr2:32916525	CDS	intron	translocation/5'-5'	0	0	0	3	1632	low	.	.	.	.	.	ENSG00000126247.11	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785765	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
NRP1	FIBIN(9775),BBOX1(33863)	-/.	./.	chr10:33334709	chr11:27006862	5'UTR	intergenic	translocation	0	0	0	15	3	low	.	.	.	.	.	ENSG00000099250.18	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565293	chr15:81565348	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419128	chr14:106419141	exon	exon	duplication/5'-5'	0	0	0	92	71	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
TMEM154	CDH13	-/.	+/.	chr4:152661294	chr16:83134535	intron	intron	translocation	0	0	0	99	57	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000140945.17	.	.	upstream	upstream	low_entropy	.	.	.
RNU6-1012P(70886),LINC02445(8475)	RNU6-1012P(70897),LINC02445(8464)	./.	./.	chr12:73750182	chr12:73750193	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419147	chr14:106419156	exon	exon	duplication/5'-5'	0	0	0	92	71	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
CARMIL1	TUFMP1(4224),AC129926.2(1285)	+/.	./.	chr6:25343856	chr17:27088260	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000079691.18	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	RUFY4(18121),CXCR2(16587)	./.	./.	chr2:128443843	chr2:218108702	intergenic	intergenic	inversion	0	0	0	2	125	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC108467.1(7074),THAP12P9(264527)	AC108467.1(7106),THAP12P9(264495)	./.	./.	chr4:45058726	chr4:45058758	intergenic	intergenic	duplication/ITD	0	0	0	223	223	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ENPP6	ENPP6	-/.	-/.	chr4:184122414	chr4:184122422	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000164303.11	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
ATXN7	FP326651.1	+/.	+/.	chr3:63900074	chr9:65386862	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	ENSG00000287329.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046183	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(4)	.	.	.
AC113208.3(5138),AC068338.1(9260)	AC113208.3(5153),AC068338.1(9245)	./.	./.	chr15:75239972	chr15:75239987	intergenic	intergenic	duplication/ITD	0	0	0	13	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AC016766.1	AC018765.1(20222),HPRT1P2(245014)	-/.	./.	chr2:164102755	chr5:30003336	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000237844.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MARK2P15(325173),LINC02650(32758)	SYT1	./.	+/.	chr10:83639648	chr12:79198619	intergenic	intron	translocation	0	0	0	4	17	low	.	.	.	.	.	.	ENSG00000067715.14	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092320	chr11:88092415	intron	intron	duplication/ITD	0	0	0	59	847	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DYM	DYM	-/.	-/.	chr18:49317552	chr18:49317565	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000141627.14	ENSG00000141627.14	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
MAGI2	MAGI2	-/.	-/.	chr7:78083380	chr7:78083431	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000187391.22	ENSG00000187391.22	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
NAV1	NAV1	+/.	+/.	chr1:201702673	chr1:201702688	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000134369.15	.	.	upstream	downstream	duplicates(11),low_entropy(8)	.	.	.
AL357833.1(94714),AL450322.2(97938)	TMCO3(3191),TFDP1(26940)	./.	./.	chr10:3651028	chr13:113557781	intergenic	intergenic	translocation	0	0	0	2	13	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097521.1(19713),ADAM20P3(14052)	.	./.	./.	chr4:187732042	KI270733.1:125835	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AC112204.2(4040),UGT3A1(6973)	Z96074.1	./.	+/.	chr5:35944033	chrX:137806579	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000283692.2	.	.	downstream	downstream	mismatches(1)	.	.	.
TENM3	PRKN	+/.	-/.	chr4:182445646	chr6:162063547	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000218336.9	ENSG00000185345.23	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
AC093627.22	FIBIN(9775),BBOX1(33863)	-/.	./.	chr7:117610	chr11:27006862	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	downstream	mismatches(2)	.	.	.
LINC00486	FP565260.1	+/.	-/.	chr2:32916556	chr21:5152117	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000275464.5	.	.	downstream	downstream	mismatches	.	.	.
AADACL3(16815),C1orf158(625)	AJ011931.1	./.	+/.	chr1:12745575	chr21:45872158	intergenic	exon	translocation	0	0	0	3	2	low	.	.	.	.	.	.	ENSG00000276633.1	.	.	downstream	upstream	mismatches(1)	.	.	.
TYRO3(16366),AC016134.1(9502)	CREB3L3	./.	+/.	chr15:41599955	chr19:4156113	intergenic	intron	translocation	0	0	0	186	0	low	.	.	.	.	.	.	ENSG00000060566.14	.	.	downstream	upstream	mismatches(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(218),AC106894.1(74379)	./.	./.	chr4:16898832	chr4:16898896	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331423	chr19:55331432	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046185	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(10)	.	.	.
AL050402.1(52802),AL133456.1(50977)	AL050402.1(52857),AL133456.1(50922)	./.	./.	chr22:27512862	chr22:27512917	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SGSM1	SGSM1	+/.	+/.	chr22:24851442	chr22:24851485	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000167037.19	ENSG00000167037.19	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
SNX18P9(21852),CR769776.2(787)	TTC3	./-	+/+	chr9:64462032	chr21:37126080	intergenic	CDS/splice-site	translocation	0	0	0	0	3	low	.	.	|E3_ubiquitin-protein_ligase_TTC3/DZIP3_domain(100%),Ring_finger_domain(100%)	.	.	.	ENSG00000182670.13	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC37B(9396),AC090616.2(20279)	LRRC37B(9458),AC090616.2(20217)	./.	./.	chr17:32062900	chr17:32062962	intergenic	intergenic	duplication/ITD	0	0	0	7	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AC008014.1	.	+/.	./.	chr12:46670813	GL000220.1:116387	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257261.6	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC008014.1	FP236383.3	+/.	+/.	chr12:46670813	chr21:8444185	intron	intron	translocation	0	0	0	0	765	low	.	.	.	.	.	ENSG00000257261.6	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565355	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CASC8	.	-/.	./.	chr8:127481284	GL000220.1:160360	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000246228.6	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419196	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(2),merge_adjacent	.	.	.
RNU6-551P(110281),PAPSS1(44775)	FP671120.4	./.	+/.	chr4:107545501	chr21:8217333	intergenic	intron	translocation	0	0	0	7	4	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
GTF3C3(740),C2orf66(3952)	AC027369.4	./.	+/.	chr2:196800465	chr11:48893563	intergenic	intron	translocation	0	0	0	1	23	low	.	.	.	.	.	.	ENSG00000254920.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AL136115.3(9930),KHDRBS1(16904)	NEURL1	./.	+/.	chr1:31996964	chr10:103571846	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107954.10	.	.	upstream	downstream	mismatches(1)	.	.	.
PDE4DIP	OTX2P1(77477),PCSK5(88592)	+/.	./.	chr1:148810794	chr9:75802052	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000178104.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(214),AC106894.1(74383)	./.	./.	chr4:16898832	chr4:16898892	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(26),low_entropy(4)	.	.	.
AC107399.1(30680),LINC02262(33729)	AC107399.1(30695),LINC02262(33714)	./.	./.	chr4:117280868	chr4:117280883	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02590(3055),RNU6-242P(44551)	LINC02590(3064),RNU6-242P(44542)	./.	./.	chr2:43046837	chr2:43046846	intergenic	intergenic	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442269	intron	intron	translocation	0	0	0	1606	6	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
DMD	DMD	-/.	-/.	chrX:31138620	chrX:31138679	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
SAPCD2P1(11258),ZNF735(12939)	SAPCD2P1(11311),ZNF735(12886)	./.	./.	chr7:64194151	chr7:64194204	intergenic	intergenic	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TAF1	TAF1	+/.	+/.	chrX:71483740	chrX:71483755	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000147133.16	ENSG00000147133.16	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565309	chr15:81565318	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NEURL1	MTATP6P24(592),NUBP1(17898)	+/.	./.	chr10:103571846	chr16:10725888	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107954.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916408	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
IGF2	.	-/.	./.	chr11:2138068	GL000220.1:114132	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000167244.21	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RABGAP1L-DT	TRERF1	-/.	-/.	chr1:174121817	chr6:42262474	intron	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	LINC02620	./.	-/.	chr7:39505425	chr10:104479850	intergenic	intron	translocation	0	0	0	23	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565309	chr15:81565318	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670926	chr2:23670935	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(4)	.	.	.
GLYATL1	FP236383.3	+/.	+/.	chr11:58919736	chr21:8442048	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000166840.13	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP20DC	TDRP(38146),ERICH1(30819)	-/.	./.	chr3:59049800	chr8:583927	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021200	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51919),RBMY2WP(38073)	./.	./.	chrY:22724736	chrY:22724778	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12)	.	.	.
ZNF701	ZNF701	+/.	+/.	chr19:52561159	chr19:52561174	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000167562.13	ENSG00000167562.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396386	chr10:104396395	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683458	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NFU1P2(125219),LINC01776(8060)	NFU1P2(125230),LINC01776(8049)	./.	./.	chr1:98202687	chr1:98202698	intergenic	intergenic	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CANT1	FP236383.3	-/-	+/+	chr17:78995148	chr21:8397815	CDS	intron	translocation	0	0	0	8	2539	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262507	chr6:42262516	intron	intron	duplication/ITD	0	0	0	3754	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(5)	.	.	.
AL355674.1(96148),RORB-AS1(4825)	AL355674.1(96213),RORB-AS1(4760)	./.	./.	chr9:74480726	chr9:74480791	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(25),low_entropy(10)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262495	chr6:42262504	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
LINC02554	AL020994.1	+/.	-/.	chr22:27316603	chr22:27316616	intron	intron	duplication/3'-3'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000223726.1	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392811	chr1:90392820	intron	intron	duplication/ITD	0	0	0	334	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC004825.1(21678),AC004825.2(25550)	AC004825.1(21687),AC004825.2(25541)	./.	./.	chr14:70881107	chr14:70881116	intergenic	intergenic	duplication/ITD	0	0	0	8	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNMB2-AS1	KCNMB2-AS1	-/.	-/.	chr3:178655096	chr3:178655105	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000237978.6	.	.	upstream	downstream	duplicates(5),low_entropy(5)	.	.	.
KCNMB2-AS1	KCNMB2	-/.	+/.	chr3:178655096	chr3:178655105	intron	intron	duplication/5'-5'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000197584.12	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
BX546450.2(8631),BX546450.1(8566)	BX546450.2(8671),BX546450.1(8526)	./.	./.	chrX:151506985	chrX:151507025	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNMB2	KCNMB2-AS1	+/.	-/.	chr3:178655096	chr3:178655105	intron	intron	duplication/3'-3'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000237978.6	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
CALN1(65171),TYW1B(46422)	CALN1(65180),TYW1B(46413)	./.	./.	chr7:72512322	chr7:72512331	intergenic	intergenic	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
HOXC6	Y_RNA(32923),AC044873.1(218501)	+/.	./.	chr12:54017572	chr18:78577111	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000197757.8	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNMB2	KCNMB2	+/.	+/.	chr3:178655096	chr3:178655105	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000197584.12	.	.	upstream	downstream	duplicates(5),low_entropy(5)	.	.	.
AC068138.1(42092),AC062015.1(144755)	TYRO3(16330),AC016134.1(9538)	./.	./.	chr2:226035289	chr15:41599919	intergenic	intergenic	translocation	0	0	0	1	187	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025465.1	TUBB2BP1(658),LINC02525(2204)	-/.	./.	chr5:124505746	chr6:3180422	intron	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000248296.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670926	chr2:23670935	intron	intron	duplication/3'-3'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(2)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396501	chr8:22396599	intron	intron	duplication/ITD	0	0	0	306	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(36),low_entropy(20)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916559	chr21:8397851	intron	intron	translocation/5'-5'	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
UBE2W	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	chr8:73820102	chr21:8259010	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3848),GPN2(7828)	./.	./.	chr1:26868241	chr1:26868304	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(2),merge_adjacent	.	.	.
SFN(3787),GPN2(7889)	SFN(3847),GPN2(7829)	./.	./.	chr1:26868243	chr1:26868303	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275773	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(4),low_entropy(3),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916546	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396376	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
GALNT13	TSBP1-AS1	+/.	+/.	chr2:153899212	chr6:32339918	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	ENSG00000225914.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC068205.1	SCAT1	+/.	-/.	chr11:43557756	chr17:78622042	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000283217.1	ENSG00000267123.7	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116359.1(16747),AC094105.1(25725)	.	./.	./.	chr5:2805296	KI270733.1:145955	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ADAMTS9-AS2	EML1	+/.	+/.	chr3:64736203	chr14:99796197	intron	intron	translocation/3'-3'	0	0	0	974	1790	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000066629.18	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
PAXBP1(87),C21orf62-AS1(221)	PAXBP1(96),C21orf62-AS1(212)	./.	./.	chr21:32771879	chr21:32771888	intergenic	intergenic	duplication/ITD	0	0	0	760	721	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IL15(110186),INPP4B(178987)	FP236383.3	./.	+/.	chr4:141844173	chr21:8397816	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	GL000220.1:158219	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
RPL12P23(41217),AL109910.1(12859)	MC5R	./.	+/.	chr6:170241475	chr18:13826431	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000176136.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	RGPD5	+/.	+/.	chr2:32916597	chr2:109794609	intron	intron	inversion/3'-3'	0	0	0	46	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000015568.13	.	.	downstream	downstream	mismatches	.	.	.
AL020994.1	AL020994.1	-/.	-/.	chr22:27316603	chr22:27316616	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000223726.1	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9791),AC108063.2(20064)	./.	./.	chr4:16094104	chr4:16094169	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
USP14	FOXA3(2578),IRF2BP1(7233)	+/.	./.	chr18:158826	chr19:45876375	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000101557.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	GL000220.1:114247	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
RNU6-551P(110281),PAPSS1(44775)	.	./.	./.	chr4:107545501	GL000220.1:116805	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FYB2	FP671120.4	-/.	+/.	chr1:56742060	chr21:8214689	intron	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	ENSG00000187889.13	ENSG00000278996.1	.	.	upstream	upstream	mismatches	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565305	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(7),low_entropy(8)	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916520	chr21:8259013	intron	intergenic	translocation	0	0	0	1644	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
ARHGEF10	AC026765.3	+/.	+/.	chr8:1946622	chr12:114698741	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104728.16	ENSG00000257817.2	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785691	chr2:101785790	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(5),merge_adjacent	.	.	.
RHBDF1(353),MPG(299)	.	./.	./.	chr16:76708	GL000220.1:158230	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
RNU7-53P(79092),ARL2BPP4(63647)	ALPK3	./.	+/.	chr5:130465772	chr15:84847249	intergenic	intron	translocation	0	0	0	2	60	low	.	.	.	.	.	.	ENSG00000136383.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565352	chr15:81565363	intron	intron	duplication	0	0	0	0	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP001823.1(3425),ELMOD1(763)	AL139381.1	./.	-/.	chr11:107590328	chr13:94977310	intergenic	intron	translocation	0	0	0	683	4	low	.	.	.	.	.	.	ENSG00000287635.1	.	.	upstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	5_8S_rRNA(2077),FP236383.3(121633)	./.	./.	chr3:103984260	chr21:8259010	intergenic	intergenic	translocation	0	0	0	6	2548	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	chr8:73820102	chr21:8442045	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419120	chr14:106419207	exon	exon	duplication/ITD	0	0	0	71	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MFF-DT	FP236383.3	-/-	+/+	chr2:227268528	chr21:8442045	exon	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000236432.8	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
NRP1	RPL12P4(19716),LINC01440(314042)	-/.	./.	chr10:33334709	chr20:55094856	5'UTR	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000099250.18	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01592	LSM14B	-/.	+/.	chr8:68940496	chr20:62131771	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000253658.6	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419128	chr14:106419141	exon	exon	duplication/3'-3'	0	0	0	92	71	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
LINC00486	AP002469.1(35919),UBASH3B(529)	+/.	./.	chr2:32916556	chr11:122655193	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AL450426.1(19778),OR13C8(12196)	PDCD4	./.	+/.	chr9:104556972	chr10:110896212	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150593.18	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116534.1	TMEM105(3174),AC027601.5(5335)	-/.	./.	chr11:22145502	chr17:81333848	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287962.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
VPS54(36311),AC012368.2(30614)	DNAH6	./.	+/.	chr2:64055739	chr2:84634865	intergenic	intron	duplication	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000115423.19	.	.	upstream	downstream	mismatches(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3315),MYBL1(40336)	./.	./.	chr8:66521791	chr8:66521839	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565313	chr15:81565322	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
INPP5D	CYP11B2	+/.	-/.	chr2:233117636	chr8:142912472	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000179142.2	.	.	downstream	downstream	mismatches(1)	.	.	.
MFF-DT	FP236383.3	-/-	+/+	chr2:227268528	chr21:8397815	exon	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000236432.8	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
LINC00303(15348),AL592146.2(7920)	H3P11(26452),THRAP3P1(156974)	./.	./.	chr1:204056613	chr3:31295858	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565309	chr15:81565318	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RPL34-DT	.	-/.	./.	chr4:108568686	GL000220.1:114247	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000234492.4	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
FAM83B	GSE1	+/.	+/.	chr6:54859661	chr16:85260115	intron	intron	translocation	0	1	0	3	2	low	.	.	.	.	.	ENSG00000168143.9	ENSG00000131149.19	.	.	downstream	upstream	min_support	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469908	chr7:26469916	intron	intron	duplication/ITD	0	0	0	48	9	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	low_entropy(3)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902252	chr4:94902263	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(14),merge_adjacent	.	.	.
AP003390.1(4403),AP001994.1(77278)	AP003390.1(4502),AP001994.1(77179)	./.	./.	chr11:119744026	chr11:119744125	intergenic	intergenic	duplication/ITD	0	0	0	1470	1348	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC044798.3	AC115100.1(211620),AC090506.1(87582)	-/.	./.	chr16:49155863	chr18:30625693	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL34-DT	.	-/.	./.	chr4:108568686	KI270733.1:176182	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000234492.4	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
AC245297.1	OTX2P1(77481),PCSK5(88588)	-/.	./.	chr1:149319443	chr9:75802056	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000215861.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	U6(246391),HSP90AB2P(35612)	+/.	./.	chr3:64736203	chr4:13297802	intron	intergenic	translocation	0	0	0	974	672	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	downstream	duplicates(10)	.	.	.
RPL34-DT	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	chr4:108568686	chr21:8259010	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000234492.4	.	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458068	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NOTCH2(12177),RNU6-465P(14018)	GSE1	./.	+/.	chr1:120112956	chr16:85260115	intergenic	intron	translocation	0	0	0	1	2	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	downstream	upstream	mismatches(1)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96192),RORB-AS1(4781)	./.	./.	chr9:74480733	chr9:74480770	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143150	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	FP671120.4	-/.	+/.	chr8:73820102	chr21:8214781	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000278996.1	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
PRKCA	C5orf47	+/+	+/-	chr17:66302744	chr5:173985151	5'UTR	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	ENSG00000185056.10	.	.	downstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31943879	chrX:31943888	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51920),RBMY2WP(38072)	./.	./.	chrY:22724736	chrY:22724779	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419202	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(3)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916560	chr21:8217231	intron	intron	translocation/5'-5'	0	0	0	1606	34	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
DMD	DMD	-/.	-/.	chrX:31187719	chrX:31187732	intron	intron	duplication/ITD	0	0	0	73	69	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC093627.22	LINC01500	-/.	+/.	chr7:117610	chr14:59014165	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000258583.7	.	.	upstream	downstream	mismatches(1)	.	.	.
TMCO3(3220),TFDP1(26911)	CYP2A7	./.	-/.	chr13:113557810	chr19:40880795	intergenic	intron	translocation	0	0	0	7	22	low	.	.	.	.	.	.	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS2P6(21879),AC091305.1(36626)	MT-RNR1	./.	+/.	chr18:70453004	chrM:1502	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441076	chr16:51441067	exon	exon	duplication/ITD	0	0	0	22	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
AC106793.1	AC106793.1	+/.	+/.	chr16:58830258	chr16:58830320	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000245768.7	ENSG00000245768.7	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
IL15(110186),INPP4B(178987)	.	./.	./.	chr4:141844173	GL000220.1:158220	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886345	chr10:44886354	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
NOS1AP	LINC00499	+/.	+/.	chr1:162261529	chr4:138402531	intron	intron	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000251372.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003066.1	AP003066.1	+/.	+/.	chr11:96914351	chr11:96914360	intron	intron	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	ENSG00000254587.2	ENSG00000254587.2	.	.	upstream	downstream	duplicates(3)	.	.	.
IL15(110186),INPP4B(178987)	.	./.	./.	chr4:141844173	GL000220.1:114248	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
IL15(110186),INPP4B(178987)	.	./.	./.	chr4:141844173	KI270733.1:131104	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117370	chr10:113117379	intron	intron	duplication/ITD	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TAFA2	ACYP1	-/.	-/.	chr12:62071326	chr14:75068465	intron	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000198673.10	ENSG00000119640.9	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117379	chr10:113117388	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(17),low_entropy(6)	.	.	.
IL15(110186),INPP4B(178987)	5_8S_rRNA(2078),FP236383.3(121632)	./.	./.	chr4:141844173	chr21:8259011	intergenic	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
IL15(110186),INPP4B(178987)	FP236383.3	./.	+/.	chr4:141844173	chr21:8442046	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021204	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(17)	.	.	.
ZFPM2	C22orf34	+/.	-/.	chr8:104827532	chr22:49540762	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000188511.12	.	.	downstream	downstream	mismatches(1)	.	.	.
CCND3	PAXBP1(174),C21orf62-AS1(134)	-/.	./.	chr6:41987518	chr21:32771966	intron	intergenic	translocation	0	0	0	7	126	low	.	.	.	.	.	ENSG00000112576.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785683	chr2:101785782	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397816	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
AC044798.3	AC115100.1(211620),AC090506.1(87582)	-/.	./.	chr16:49155857	chr18:30625693	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFPM2	EPN3	+/.	+/.	chr8:104827532	chr17:50533042	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000049283.18	.	.	downstream	upstream	mismatches(1)	.	.	.
AC012355.1(57428),ANKRD11P1(266719)	AC012355.1(57464),ANKRD11P1(266683)	./.	./.	chr2:80927618	chr2:80927654	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
SYDE2(865),C1orf52(48072)	AC027369.2(207),TRIM51GP(13307)	./.	./.	chr1:85201881	chr11:48962017	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PDE4B	AC025165.2	+/.	-/.	chr1:66363049	chr12:57704220	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184588.18	ENSG00000257342.1	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL7L1P9(26066),TNS1(12231)	TACC2	./.	+/.	chr2:217787357	chr10:122215486	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000138162.19	.	.	upstream	upstream	homopolymer(1)	.	.	.
BAIAP2L1	MAPK8IP3	-/.	+/.	chr7:98400517	chr16:1707113	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000006453.14	ENSG00000138834.14	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765654	chr11:121765669	intron	intron	duplication/ITD	0	0	0	16	11	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	low_entropy(3)	.	.	.
HECW1	TPT1P14(48516),RPL35AP37(90458)	+/.	./.	chr7:43336181	chrX:15026979	intron	intergenic	translocation	0	0	0	38	121	low	.	.	.	.	.	ENSG00000002746.15	.	.	.	downstream	upstream	duplicates(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785678	chr2:101785777	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	duplicates(1),low_entropy(11)	.	.	.
AC124293.1(5567),AC011131.1(26632)	AC124293.1(5600),AC011131.1(26599)	./.	./.	chr8:72435679	chr8:72435712	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
C1QTNF12	LINC01667(149),RN7SL52P(64184)	-/.	./.	chr1:1245901	chr21:9838160	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380597	chr20:36380609	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(2)	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396370	chr10:104479899	intron	intron	duplication/3'-3'	0	0	0	217	988	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	low_entropy	.	.	.
ATP2B2	LINC00540	-/-	+/+	chr3:10449762	chr13:22123376	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157087.20	ENSG00000276476.3	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	CDK14	-/-	+/+	chr11:9003961	chr7:90766757	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Protein_kinase_domain(92%)	.	.	ENSG00000175352.11	ENSG00000058091.17	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC39A14	AC087633.2	+/.	+/.	chr8:22396540	chr15:95080444	intron	intron	translocation/3'-3'	0	0	0	308	0	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000277654.6	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193773	chr12:16193836	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MARK1	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	chr1:220591888	chr21:8259021	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000116141.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
C17orf100	C17orf100	+/.	+/.	chr17:6659790	chr17:6659833	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000256806.6	ENSG00000256806.6	.	.	upstream	downstream	duplicates(9),low_entropy(5)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419210	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824750	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TAOK1	PAPPA	+/+	+/+	chr17:29390579	chr9:116337689	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Sushi_repeat_(SCR_repeat)(100%)	.	.	ENSG00000160551.12	ENSG00000182752.10	.	.	downstream	upstream	mismatches(1)	.	.	.
MAGI2	MAGI2	-/.	-/.	chr7:78083380	chr7:78083443	intron	intron	duplication/ITD	0	0	0	11	10	low	.	.	.	.	.	ENSG00000187391.22	ENSG00000187391.22	.	.	upstream	downstream	duplicates(3)	.	.	.
AC087863.2	AC087863.2	-/.	-/.	chr12:118855034	chr12:118855043	intron	intron	duplication/ITD	0	0	0	39	39	low	.	.	.	.	.	ENSG00000256149.1	ENSG00000256149.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ADAMTS9-AS2	AC104009.1	+/.	-/.	chr3:64736203	chr11:22312120	intron	intron	translocation	0	0	0	974	33	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000254768.6	.	.	upstream	upstream	mismatches(1)	.	.	.
LUC7L2(6372),RNU6-911P(18911)	VDR	./.	-/.	chr7:139429829	chr12:47857799	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000111424.12	.	.	downstream	downstream	homopolymer(1)	.	.	.
SGMS1	FP236383.3	-/.	+/.	chr10:50624032	chr21:8397820	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000198964.14	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261487	chr1:162261496	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MACROD2	MACROD2	+/.	+/.	chr20:15209088	chr20:15209116	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000172264.17	ENSG00000172264.17	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
AC022215.2	AC117383.1	-/.	-/.	chr3:141268163	chr3:141268207	intron	intron	duplication	0	0	0	9	9	low	.	.	.	.	.	ENSG00000287155.1	ENSG00000249417.1	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AL356130.1(30315),LINC01622(19002)	MTCO3P30(61596),HMGB3P23(76365)	./.	./.	chr6:939321	chr9:31568211	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824766	chr3:64736203	5'UTR	intron	translocation	0	0	0	144	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CGRRF1	.	+/.	./.	chr14:54510146	GL000220.1:127651	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000100532.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TYRO3(16292),AC016134.1(9576)	TYRO3(16363),AC016134.1(9505)	./.	./.	chr15:41599881	chr15:41599952	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RHBDF1(350),MPG(302)	MARCHF2	./.	+/.	chr16:76705	chr19:8423197	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000099785.11	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419200	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNU7-144P(35060),PREX1(94883)	DNASE1L1	./.	-/.	chr20:48529369	chrX:154411510	intergenic	intron	translocation	1	0	0	1	0	low	.	.	.	.	.	.	ENSG00000013563.14	.	.	downstream	upstream	min_support	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824764	chr3:64736203	5'UTR	intron	translocation	0	0	0	144	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	TOLLIP	./.	-/.	chr1:47437186	chr11:1289356	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000078902.16	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674822	chr5:20674831	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(29),low_entropy(5)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096623	chr2:141096690	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785669	chr2:101785761	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125720	chr3:120125755	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(23),low_entropy(3)	.	.	.
PAXBP1(91),C21orf62-AS1(217)	PAXBP1(100),C21orf62-AS1(208)	./.	./.	chr21:32771883	chr21:32771892	intergenic	intergenic	duplication/ITD	0	0	0	774	721	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
FYB2	5_8S_rRNA(1979),FP236383.3(121731)	-/.	./.	chr1:56742060	chr21:8258912	intron	intergenic	translocation	0	0	0	7	101	low	.	.	.	.	.	ENSG00000187889.13	.	.	.	upstream	upstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092439	intron	intron	duplication	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
TUBBP11(353348),RAP1BP2(78779)	FP236383.3	./.	+/.	chr3:103984260	chr21:8442045	intergenic	intron	translocation	0	0	0	6	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262500	chr6:42262509	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683468	chr15:81683477	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392888	chr11:88092441	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	low_entropy	.	.	.
LZIC	LINC00486	-/.	+/.	chr1:9932117	chr2:32916556	exon	intron	translocation	0	0	0	5	1606	low	.	.	.	.	.	ENSG00000162441.12	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	chr7:129531132	chr15:45462779	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC006989.1(143867),PUDPP1(262080)	AC006989.1(143880),PUDPP1(262067)	./.	./.	chrY:15086582	chrY:15086595	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132189015	chr7:132189024	intron	intron	duplication/ITD	0	0	0	211	211	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481634	chr17:39481716	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL354919.1	AL354919.1	-/-	-/-	chr1:31842946	chr1:31842961	exon	exon	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000203620.2	ENSG00000203620.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683455	chr15:81683470	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(74),low_entropy(27)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419196	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(2)	.	.	.
LINC00486	.	+/.	./.	chr2:32916546	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046191	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(19),low_entropy(1),merge_adjacent	.	.	.
PDE4B	OS9	+/.	+/.	chr1:66363049	chr12:57704220	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184588.18	ENSG00000135506.16	.	.	upstream	downstream	mismatches(1)	.	.	.
RHBDF1(353),MPG(299)	FP671120.4	./.	+/.	chr16:76708	chr21:8214792	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702356	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683455	chr15:81683470	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(74),low_entropy(27)	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	KI270733.1:154301	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8447432	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
POGZ	ZBTB20	-/-	-/-	chr1:151459437	chr3:114455079	5'UTR	intron	translocation	0	0	0	0	5	low	.	.	|BTB/POZ_domain(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000143442.22	ENSG00000181722.17	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683460	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021215	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(548),low_entropy(12)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479807	chr10:104479906	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886347	chr10:44886356	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(5),low_entropy(3),merge_adjacent	.	.	.
ADAMTS9-AS2	EML1	+/.	+/.	chr3:64736203	chr14:99796193	intron	intron	translocation/3'-3'	0	0	0	974	1790	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000066629.18	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
FP236383.3	ARHGAP6	+/.	-/.	chr21:8444193	chrX:11159509	intron	intron	translocation/3'-3'	0	0	0	765	7	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000047648.23	.	.	upstream	downstream	mismatches(1)	.	.	.
AC113208.3(5151),AC068338.1(9247)	AC113208.3(5160),AC068338.1(9238)	./.	./.	chr15:75239985	chr15:75239994	intergenic	intergenic	duplication/ITD	0	0	0	13	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC016735.1(19227),LINC01819(2536)	AC016735.1(19292),LINC01819(2471)	./.	./.	chr2:43025287	chr2:43025352	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ADGRF1	ADGRF1	-/-	-/-	chr6:47013863	chr6:47013904	exon	exon	duplication/ITD	0	0	0	5	5	low	.	.	SEA_domain(100%)|7_transmembrane_receptor_(Secretin_family)(100%),GPCR_proteolysis_site__GPS__motif_(100%)	.	.	ENSG00000153292.16	ENSG00000153292.16	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
NXF2(27600),NXF2B(6074)	NXF2(27615),NXF2B(6059)	./.	./.	chrX:102354322	chrX:102354337	intergenic	intergenic	duplication/ITD	0	0	0	55	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396372	chr10:104479899	intron	intron	duplication/3'-3'	0	0	0	217	988	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785684	chr2:101785783	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469913	chr7:26469922	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
LINC00486	5_8S_rRNA(2179),FP236383.3(121531)	+/.	./.	chr2:32916556	chr21:8259112	intron	intergenic	translocation	0	0	0	1606	52	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
RMDN2	MMP2-AS1	+/.	-/.	chr2:38020787	chr16:55433378	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115841.21	ENSG00000260135.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214883	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
TSPAN14	TSPAN14	+/.	+/.	chr10:80511714	chr10:80511727	intron	intron	duplication/ITD	0	0	0	39	39	low	.	.	.	.	.	ENSG00000108219.15	ENSG00000108219.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	AC087636.1	+/.	-/.	chr8:22396540	chr15:95080444	intron	intron	translocation	0	0	0	308	0	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000258773.2	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01320	FP671120.4	+/.	+/.	chr2:33767495	chr21:8216865	intron	intron	translocation	0	0	0	11	5	low	.	.	.	.	.	ENSG00000228262.10	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
U6(246391),HSP90AB2P(35612)	MIR4300HG	./.	-/.	chr4:13297802	chr11:82143174	intergenic	intron	translocation	0	0	0	672	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	downstream	downstream	mismatches(1)	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479901	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
PRKG2(15204),RNU5A-2P(103982)	LINC02882	./.	-/.	chr4:81230321	chr12:73881431	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000251138.7	.	.	upstream	upstream	low_entropy(1)	.	.	.
KCNMB2	KCNMB2	+/.	+/.	chr3:178655087	chr3:178655148	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000197584.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PLXNA4	MIR4300HG	-/.	-/.	chr7:132189035	chr11:82143174	intron	intron	translocation	0	0	0	211	719	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
ANO5	TMEM105(3174),AC027601.5(5335)	+/.	./.	chr11:22145502	chr17:81333848	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171714.12	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4377),AP001994.1(77304)	AP003390.1(4386),AP001994.1(77295)	./.	./.	chr11:119744000	chr11:119744009	intergenic	intergenic	duplication/ITD	0	0	0	558	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
OOSP4B	AC011503.1(44853),RNA5-8SP4(1470)	+/.	./.	chr11:59999311	chr19:24002888	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000255393.2	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
SNX18P25(61831),DCUN1D4(2191640)	SNX18P25(61850),DCUN1D4(2191621)	./.	./.	chr4:49651360	chr4:49651379	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
INTS5(552),C11orf98(8963),LBHD1(8963)	ALDH1L2	./.	-/.	chr11:62653854	chr12:105046182	intergenic	intron	translocation	0	0	0	105	1664	low	.	.	.	.	.	.	ENSG00000136010.14	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF780A	FP671120.4	-/.	+/.	chr19:40090468	chr21:8214792	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000197782.14	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150868	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
C17orf100	ALOX15P1	+/.	+/.	chr17:6659790	chr17:6659833	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000256806.6	ENSG00000274114.2	.	.	upstream	downstream	duplicates(9),low_entropy(5)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392889	chr11:88092439	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
AL133372.2	SPINT2	-/.	+/.	chr14:30207314	chr19:38288614	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248975.2	ENSG00000167642.13	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358053.1(206642),AL591644.1(221039)	AL358053.1(206722),AL591644.1(220959)	./.	./.	chr9:1756745	chr9:1756825	intergenic	intergenic	duplication/ITD	0	0	0	40	40	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(4)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5453),ZNF669(8442)	./.	./.	chr1:247091449	chr1:247091520	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(5)	.	.	.
AC104465.1(74383),AC092810.3(31644)	AC104465.1(74421),AC092810.3(31606)	./.	./.	chr1:209075859	chr1:209075897	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
G6PC2	DHFR	+/.	-/.	chr2:168903786	chr5:80651216	intron	intron	translocation/3'-3'	0	0	0	0	81	low	.	.	.	.	.	ENSG00000152254.11	ENSG00000228716.7	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916568	chr21:8259013	intron	intergenic	translocation	0	0	0	1588	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262599	chr6:42274711	intron	intron	deletion/read-through	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	downstream	upstream	read_through(1)	.	.	.
PCAT14(10852),AP000345.1(8415)	PCAT14(10919),AP000345.1(8348)	./.	./.	chr22:23558649	chr22:23558716	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(4)	.	.	.
MGAT5	TACC2	+/.	+/.	chr2:134430972	chr10:122215486	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152127.9	ENSG00000138162.19	.	.	upstream	upstream	homopolymer(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419204	chr14:106419121	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
EMCN	EMCN	-/.	-/.	chr4:100459169	chr4:100459184	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000164035.10	ENSG00000164035.10	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
PXYLP1	AC022215.2	+/.	-/.	chr3:141268163	chr3:141268207	intron	intron	duplication/3'-3'	0	0	0	9	9	low	.	.	.	.	.	ENSG00000155893.13	ENSG00000287155.1	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
INSIG2	INSYN1-AS1(36542),AC018943.1(63794)	+/.	./.	chr2:118089590	chr15:73807155	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000125629.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TSPEAR	TSPEAR	-/.	-/.	chr21:44599128	chr21:44599172	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000175894.18	ENSG00000175894.18	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
ATP8B4	ATP8B4	-/.	-/.	chr15:50072923	chr15:50072936	intron	intron	duplication/ITD	0	0	0	53	0	low	.	.	.	.	.	ENSG00000104043.15	ENSG00000104043.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SUSD5(52300),FBXL2(5915)	NKILA(41152),AL162291.1(141462)	./.	./.	chr3:33271110	chr20:57753932	intergenic	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RGN	RGN	+/.	+/.	chrX:47086735	chrX:47086750	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000130988.13	ENSG00000130988.13	.	.	upstream	downstream	duplicates(4),low_entropy(7)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442147	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125706	chr3:120125752	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565363	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(3),low_entropy(8)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565298	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
AL606468.1(18421),LINC02608(16598)	AC025580.2	./.	+/.	chr1:212208680	chr15:45462150	intergenic	intron	translocation	0	0	0	14	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC064856.1(160628),AC009312.1(54047)	HSBP1(39475),MLYCD(39903)	./.	./.	chr2:117700092	chr16:83859212	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392802	chr1:90392891	intron	intron	duplication/ITD	0	0	0	334	334	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	same_gene	.	.	.
PAXBP1(89),C21orf62-AS1(219)	PAXBP1(98),C21orf62-AS1(210)	./.	./.	chr21:32771881	chr21:32771890	intergenic	intergenic	duplication/ITD	0	0	0	774	721	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ROBO1	CBLB	-/.	-/.	chr3:79598015	chr3:105786074	intron	intron	duplication	0	0	0	6	5	low	.	.	.	.	.	ENSG00000169855.20	ENSG00000114423.23	.	.	upstream	downstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	.	./.	./.	chr2:218108703	KI270733.1:131122	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(9),uninteresting_contigs(2)	.	.	.
AC104465.1(74377),AC092810.3(31650)	AC104465.1(74426),AC092810.3(31601)	./.	./.	chr1:209075853	chr1:209075902	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683458	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
THOC3	AC025580.2	-/.	+/.	chr5:175967559	chr15:45462157	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000051596.10	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGH-@-ext	AC011474.1	+/+	-/-	chr14:106419211	chr19:29447568	exon	intron	translocation	0	0	0	86	53	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
FXNP1(22769),NRXN3(87326)	PPIP5K1	./.	-/.	chr14:78083047	chr15:43537707	intergenic	intron	translocation	0	0	0	640	5	low	.	.	.	.	.	.	ENSG00000168781.22	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565363	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(6),low_entropy(12)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046193	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(32),low_entropy(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(210),AC106894.1(74387)	./.	./.	chr4:16898832	chr4:16898888	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886339	chr10:44886354	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479799	chr10:104479908	intron	intron	duplication	0	0	0	840	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
MYO5B	MYO5B	-/.	-/.	chr18:50122588	chr18:50122686	intron	intron	duplication/ITD	0	0	0	0	23	low	.	.	.	.	.	ENSG00000167306.20	ENSG00000167306.20	.	.	upstream	downstream	duplicates(9),low_entropy(12)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262504	chr6:42262513	intron	intron	duplication/ITD	0	0	0	3754	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC013460.1(78047),RNU6ATAC37P(48250)	GALNT7	./.	+/.	chr2:7528591	chr4:173192429	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000109586.12	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU6-521P(183181),AC007274.3(50629)	RNU6-521P(183190),AC007274.3(50620)	./.	./.	chrY:7606339	chrY:7606348	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),merge_adjacent	.	.	.
CSRNP3	CSRNP3	+/.	+/.	chr2:165494669	chr2:165494682	intron	intron	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	ENSG00000178662.16	ENSG00000178662.16	.	.	upstream	downstream	small_insert_size	.	.	.
PLPP3	VTI1A	-/.	+/.	chr1:56553048	chr10:112527817	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162407.9	ENSG00000151532.14	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC087521.3(13321),ACCSL(33503)	AC087521.3(13372),ACCSL(33452)	./.	./.	chr11:44014478	chr11:44014529	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC093627.22	AL513321.1(21925),AL592466.1(602)	-/.	./.	chr7:117610	chr10:65270717	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	upstream	mismatches(2)	.	.	.
RBFOX3(64112),AC233701.1(17772)	.	./.	./.	chr17:79580260	KI270733.1:125835	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RPL35P9(32758),EFNB2(30865)	SMAD4(44064),SRSF10P1(29173)	./.	./.	chr13:106458880	chr18:51129109	intergenic	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI2	TYRO3(16366),AC016134.1(9502)	-/.	./.	chr7:78083394	chr15:41599955	intron	intergenic	translocation	0	0	0	10	186	low	.	.	.	.	.	ENSG00000187391.22	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397917	intron	intron	translocation	0	0	0	1606	64	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	chr1:208413786	chr15:45463201	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ATP2B2	TDRP(38146),ERICH1(30819)	-/-	./+	chr3:10449762	chr8:583927	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157087.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
INTS5(552),C11orf98(8963),LBHD1(8963)	C12orf45	./.	+/.	chr11:62653854	chr12:105046182	intergenic	intron	translocation	0	0	0	105	1664	low	.	.	.	.	.	.	ENSG00000151131.11	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565342	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AC006511.6(3067),Y_RNA(433)	AL021937.3	./.	-/.	chr12:7975826	chr22:32328460	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000234626.2	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470846	chr10:3470945	intron	intron	duplication/ITD	0	0	0	23	19	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	duplicates(5),low_entropy(5)	.	.	.
COMETT	AC023034.1	-/.	+/.	chr7:116638131	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259594.6	.	.	downstream	upstream	low_entropy	.	.	.
AC020741.1	NRIP3	-/-	-/+	chr4:61428177	chr11:9003961	exon	5'UTR	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000205682.2	ENSG00000175352.11	.	.	upstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138620	chrX:31138688	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL390783.1	CACNB2	-/.	+/.	chr10:18220233	chr10:18220246	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000235020.5	ENSG00000165995.22	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SLC9A8	SLC9A8	+/.	+/.	chr20:49834141	chr20:49834186	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000197818.12	ENSG00000197818.12	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638067	chr7:116638076	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CYREN	AP003390.1(4500),AP001994.1(77181)	-/.	./.	chr7:135111985	chr11:119744123	intron	intergenic	translocation	0	0	0	0	1348	low	.	.	.	.	.	ENSG00000122783.17	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RTL1	KIAA2012	-/-	+/-	chr14:100881152	chr2:202105678	CDS	intron	translocation/5'-5'	0	1	0	0	13	low	.	.	Domain_of_unknown_function_(DUF4939)(100%),RNase_H-like_domain_found_in_reverse_transcriptase(100%)|	.	.	ENSG00000254656.3	ENSG00000182329.14	.	.	upstream	downstream	duplicates(1),min_support	.	.	.
LINC01320	FP236383.3	+/.	+/.	chr2:33767495	chr21:8399899	intron	intron	translocation	0	0	0	11	7	low	.	.	.	.	.	ENSG00000228262.10	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397815	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
ATXN7	TTPAL	+/.	+/.	chr3:63900074	chr20:44489043	intron	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	ENSG00000124120.11	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262494	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
RN7SL191P(44203),OR11Q1P(25475)	RN7SL191P(44248),OR11Q1P(25430)	./.	./.	chrX:131178593	chrX:131178638	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
LINC01877	TRERF1	+/.	-/.	chr2:199744425	chr6:42262599	intron	intron	translocation	0	0	0	0	2501	low	.	.	.	.	.	ENSG00000238217.6	ENSG00000124496.12	.	.	downstream	downstream	mismatches(1)	.	.	.
PDCD4	GLRA2	+/.	+/.	chr10:110896212	chrX:14604660	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150593.18	ENSG00000101958.14	.	.	upstream	upstream	mismatches(1)	.	.	.
ALOX15P1	ALOX15P1	+/.	+/.	chr17:6659790	chr17:6659833	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000274114.2	ENSG00000274114.2	.	.	upstream	downstream	duplicates(9),low_entropy(5)	.	.	.
AL390791.1(69362),PCNPP2(97809)	AL390791.1(69375),PCNPP2(97796)	./.	./.	chr9:88873078	chr9:88873091	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
GRM7	SVIL(151863),AL353093.1(2210)	+/.	./.	chr3:7300456	chr10:29888822	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196277.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(224),AC106894.1(74373)	./.	./.	chr4:16898832	chr4:16898902	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(24),low_entropy(12)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396371	chr10:104396380	intron	intron	duplication/ITD	0	0	0	217	0	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441075	chr16:51441060	exon	exon	duplication/ITD	0	0	0	22	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	duplicates(19),low_entropy(7)	.	.	.
AC023034.1	USP9YP6	+/.	-/.	chr15:81565294	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8444501	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
TAT-AS1(6217),AC009097.2(39304)	TAT-AS1(6302),AC009097.2(39219)	./.	./.	chr16:71584404	chr16:71584489	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CHORDC1P3(22410),SMIM31(4948)	AC027369.4	./.	+/.	chr4:164749116	chr11:48893563	intergenic	intron	translocation	0	0	0	3	23	low	.	.	.	.	.	.	ENSG00000254920.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005242.4(3763),AP005242.2(6977)	AP005242.4(3778),AP005242.2(6962)	./.	./.	chr18:14996998	chr18:14997013	intergenic	intergenic	duplication/ITD	0	0	0	43	43	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(20),low_entropy(7)	.	.	.
SNX18P25(61831),DCUN1D4(2191640)	.	./.	./.	chr4:49651360	KI270737.1:31076	intergenic	intergenic	translocation	0	0	0	1	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114252	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
HLCS	.	-/.	./.	chr21:36792523	KI270733.1:125836	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000159267.16	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
CCDC187	TPTE2P1	-/.	-/.	chr9:136267876	chr13:24931821	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000260220.7	ENSG00000253771.6	.	.	downstream	downstream	mismatches(1)	.	.	.
AC027369.4	LSM7	+/.	-/.	chr11:48893563	chr19:2328610	intron	5'UTR	translocation/3'-3'	0	0	0	23	1	low	.	.	.	.	.	ENSG00000254920.1	ENSG00000130332.15	.	.	upstream	downstream	mismatches(1)	.	.	.
PHF6(23323),HPRT1(8051)	PHF6(23336),HPRT1(8038)	./.	./.	chrX:134452114	chrX:134452127	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),low_entropy(10)	.	.	.
AC023796.1	AC023796.1	+/.	+/.	chr12:24754387	chr12:24754429	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000255745.2	ENSG00000255745.2	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC008894.3	AC027369.4	-/-	+/+	chr19:16077350	chr11:48893591	exon	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000279198.1	ENSG00000254920.1	.	.	upstream	upstream	mismatches(1)	.	.	.
MRPS22	SYT1	+/.	+/.	chr3:139172936	chr12:79198619	intron	intron	translocation/5'-5'	0	0	0	4	17	low	.	.	.	.	.	ENSG00000175110.13	ENSG00000067715.14	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
LINC00486	SLC25A21	+/.	-/.	chr2:32916556	chr14:36968070	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000183032.12	.	.	downstream	downstream	mismatches	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691687	chr1:202691758	intron	intron	duplication/ITD	0	0	0	13	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(3)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419202	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(3)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046186	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(3)	.	.	.
DMD	DMD	-/.	-/.	chrX:31187718	chrX:31187729	intron	intron	duplication/ITD	0	0	0	73	69	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AL391645.1(104895),LINC01720(25698)	CR1L	./.	+/.	chr1:190599192	chr1:207645399	intergenic	intron	deletion	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000197721.17	.	.	downstream	upstream	mismatches(1)	.	.	.
MSANTD1	AC105180.2(10848),ZFAT(76453)	+/+	./-	chr4:3245280	chr8:134401335	5'UTR	intergenic	translocation	0	0	0	0	120	low	.	.	.	.	.	ENSG00000188981.11	.	.	.	downstream	downstream	duplicates(23),mismatches(1)	.	.	.
AL391645.1(104892),LINC01720(25701)	SLC4A7	./.	-/.	chr1:190599189	chr3:27484029	intergenic	intron	translocation	0	0	0	4	6	low	.	.	.	.	.	.	ENSG00000033867.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AC073409.1(238169),ELOAP1(12688)	AC073409.1(238236),ELOAP1(12621)	./.	./.	chr2:123682614	chr2:123682681	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
POU6F2(12330),AC011290.1(40221)	LINC02620	./.	-/.	chr7:39505425	chr10:104479848	intergenic	intron	translocation	0	0	0	23	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC4A7	AC116611.1	-/.	-/.	chr3:27484029	chr4:32711206	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000033867.16	ENSG00000286784.1	.	.	downstream	upstream	mismatches(1)	.	.	.
GPRIN1(8931),SNCB(995)	5_8S_rRNA(2094),FP236383.3(121616)	./.	./.	chr5:176619087	chr21:8259027	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
MIR34AHG(11938),H6PD(23930)	TSHZ1(71255),AC116003.3(25851)	./.	./.	chr1:9210844	chr18:75361205	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143168	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916404	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
U95743.1(127345),ERCC4(13049)	.	./.	./.	chr16:13907105	KI270733.1:131958	intergenic	intergenic	translocation	0	0	0	10	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CD46P1	MED27	+/.	-/.	chr1:207645399	chr9:132004012	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000244703.3	ENSG00000160563.14	.	.	upstream	upstream	mismatches(1)	.	.	.
MARK1	.	+/.	./.	chr1:220591888	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000116141.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CR1L	MED27	+/.	-/.	chr1:207645399	chr9:132004012	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000197721.17	ENSG00000160563.14	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	DAAM1(45879),GPR135(11738)	-/.	./.	chr11:3702357	chr14:59417284	intron	intergenic	translocation	0	0	0	437	20	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NR5A1	MIR663AHG	-/-	-/-	chr9:124507406	chr20:26208396	5'UTR	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000227195.11	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114247	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SLC4A7	MED27	-/.	-/.	chr3:27484029	chr9:132004015	intron	intron	translocation	0	0	0	6	4	low	.	.	.	.	.	ENSG00000033867.16	ENSG00000160563.14	.	.	downstream	upstream	mismatches(1)	.	.	.
ALPK3	AC005597.1	+/.	-/.	chr15:84847249	chr19:30223438	intron	intron	translocation/5'-5'	0	0	0	60	2	low	.	.	.	.	.	ENSG00000136383.7	ENSG00000267223.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LDB2(146),AC106894.1(74451)	RBFOX3	./.	-/.	chr4:16898824	chr17:79442281	intergenic	intron	translocation	0	0	0	99	21	low	.	.	.	.	.	.	ENSG00000167281.19	.	.	upstream	downstream	low_entropy	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396544	chr8:22396553	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
MYO5B	MYO5B	-/.	-/.	chr18:50122589	chr18:50122683	intron	intron	duplication/ITD	0	0	0	0	23	low	.	.	.	.	.	ENSG00000167306.20	ENSG00000167306.20	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CTNND2	TTLL1	-/.	-/.	chr5:11816754	chr22:43079835	intron	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262570	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	ADGRG5	+/.	+/.	chr2:32916556	chr16:57555955	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000159618.16	.	.	downstream	upstream	mismatches	.	.	.
CD46P1	MTHFD2P4(49059),TOMM22P4(148716)	+/.	./.	chr1:207645399	chr4:162372966	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000244703.3	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL022069.2(12668),RPS6KA2(6776)	SAPCD2P1(11260),ZNF735(12937)	./.	./.	chr6:166402588	chr7:64194153	intergenic	intergenic	translocation	0	0	0	3	78	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC106870.3	AC106870.3	-/.	-/.	chr2:29889686	chr2:29889745	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000288553.1	ENSG00000288553.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117397	chr10:113117406	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DNAH8	LINC02669	+/.	-/.	chr6:39013855	chr10:3470923	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000124721.18	ENSG00000233321.2	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8215005	intron	intron	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
HGS	FP236383.3	+/.	+/.	chr17:81688571	chr21:8442056	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000185359.14	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC098828.1(31263),RPS16P2(17526)	AC140725.2(7606),OR4F4(11232)	./.	./.	chr2:20138092	chr15:101910810	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	FXNP1(22776),NRXN3(87319)	+/.	./.	chr10:113117449	chr14:78083054	intron	intergenic	translocation	0	0	0	254	640	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	downstream	downstream	low_entropy	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262474	chr6:42262483	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
SH3TC1	FP671120.4	+/.	+/.	chr4:8239876	chr21:8214689	intron	intron	translocation/3'-3'	0	0	0	7	1	low	.	.	.	.	.	ENSG00000125089.17	ENSG00000278996.1	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	AL583810.1(4962),CEP170B(1470)	+/.	./.	chr2:32916556	chr14:104863798	intron	intergenic	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
TFB1M	GSE1	-/.	+/.	chr6:155280046	chr16:85583756	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000029639.11	ENSG00000131149.19	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565302	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143170	3'UTR	intron	translocation	0	0	0	0	719	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916565	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
IGSF9B	FP236383.3	-/.	+/.	chr11:133918828	chr21:8444255	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000080854.16	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
PGAM4P2(38320),KRT18P21(117568)	NUP98	./.	-/.	chr4:115803139	chr11:3702355	intergenic	intron	translocation	0	0	0	18	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL359924.1	PDCD6IPP2(913),AC174469.1(21747)	+/.	./.	chr1:237883665	chr15:28859920	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000237250.3	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125729	chr11:3702314	intron	intron	translocation	0	0	0	305	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	upstream	upstream	duplicates(6)	.	.	.
AL929472.1(10871),MANEAL(91)	PPEF1	./.	+/.	chr1:37793756	chrX:18799787	intergenic	intron	translocation	0	0	0	3	3	low	.	.	.	.	.	.	ENSG00000086717.18	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565298	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
IGH-@-ext	PTPRN2	+/+	-/-	chr14:105867114	chr7:158428357	exon	intron	translocation	0	0	0	0	0	low	.	.	|Protein-tyrosine_phosphatase(100%),Protein-tyrosine_phosphatase_receptor_IA-2(100%),RESP18_domain(100%)	.	.	IGH-.g@-ext	ENSG00000155093.19	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481691	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(5),low_entropy(9)	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396372	chr10:104479903	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
MT-RNR2	.	+/.	./.	chrM:1794	GL000220.1:160308	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RIPK3(4786),U6(7249)	AL136418.1	./.	+/.	chr14:24344808	chr14:31265979	intergenic	intron	inversion	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000257831.1	.	.	downstream	downstream	mismatches(1)	.	.	.
RREB1	RREB1	+/+	+/+	chr6:7249074	chr6:7249063	3'UTR	3'UTR	duplication/ITD	0	0	0	0	3	low	.	.	C2H2-type_zinc-finger_domain(100%),C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000124782.20	ENSG00000124782.20	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702363	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(11),mismatches(1)	.	.	.
Y_RNA(59412),AC026320.2(251700)	AC021218.1(32147),Y_RNA(187632)	./.	./.	chr3:191700649	chr7:155998490	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419186	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	AHNAK	./.	-/.	chr3:31295858	chr11:62538456	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000124942.14	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106231128	chr14:106231192	exon	exon	duplication/3'-3'	0	0	0	8	8	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8400243	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479904	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ERBB4	ERBB4	-/.	-/.	chr2:212188188	chr2:212188199	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000178568.15	ENSG00000178568.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC098828.1(31263),RPS16P2(17526)	AC009093.2	./.	+/.	chr2:20138092	chr16:29187338	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000260517.3	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143099	chr11:82143108	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(17),low_entropy(5)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683466	chr15:81683475	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(6),low_entropy(6)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176188	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481697	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916571	chr21:8214784	intron	intron	translocation	0	0	0	1588	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916555	chr21:8214783	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138634	intron	intron	duplication/ITD	0	0	0	95	0	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(3)	.	.	.
COL11A1	ANKRD44	-/.	-/.	chr1:102945285	chr2:197034086	intron	intron	translocation/3'-3'	0	0	0	7	9	low	.	.	.	.	.	ENSG00000060718.22	ENSG00000065413.20	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785695	chr2:101785794	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(5),merge_adjacent	.	.	.
C8orf82	TRAF3IP3	-/-	+/-	chr8:144527240	chr1:209757355	3'UTR	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	Domain_of_unknown_function_(DUF4505)(100%)|	.	.	ENSG00000213563.7	ENSG00000009790.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51924),RBMY2WP(38068)	./.	./.	chrY:22724736	chrY:22724783	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),merge_adjacent	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419214	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
AP003390.1(4370),AP001994.1(77311)	AP003390.1(4379),AP001994.1(77302)	./.	./.	chr11:119743993	chr11:119744002	intergenic	intergenic	duplication/ITD	0	0	0	558	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
MFF-DT	SFRP1(2483),SNORD65B(114699)	-/-	./+	chr2:227268528	chr8:41311956	exon	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CYP4B1(9501),CYP4Z2P(14181)	AC098828.1(31263),RPS16P2(17526)	./.	./.	chr1:46828914	chr2:20138092	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008269.1	UTRN	+/.	+/.	chr2:206862123	chr6:144823828	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321.2	ENSG00000152818.18	.	.	downstream	upstream	mismatches(1)	.	.	.
AC098828.1(31263),RPS16P2(17526)	FAM149A(11480),FLJ38576(4885)	./.	./.	chr2:20138092	chr4:186184147	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097521.1(19713),ADAM20P3(14052)	FP671120.4	./.	+/.	chr4:187732042	chr21:8209535	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AC105180.2(10848),ZFAT(76453)	DMD	./.	-/.	chr8:134401335	chrX:32593975	intergenic	intron	translocation	0	0	0	120	0	low	.	.	.	.	.	.	ENSG00000198947.17	.	.	downstream	downstream	duplicates(23),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396372	chr10:104396385	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092346	chr11:88092445	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
LIN9	MYL10(432),CUX1(186176)	-/.	./.	chr1:226245481	chr7:101629728	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183814.16	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683460	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
NRIP3	AL513321.1(21928),AL592466.1(599)	-/-	./+	chr11:9003961	chr10:65270720	5'UTR	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM20C	RPSAP2(46057),NOP56P1(4672)	+/+	./+	chr7:193661	chr6:28778961	CDS	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000177706.9	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL590392.1(147211),AL136096.1(7976)	AL590392.1(147220),AL136096.1(7967)	./.	./.	chr6:88039080	chr6:88039089	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
OR4F5(9742),AL627309.1(7968)	RILPL1	./.	-/.	chr1:81327	chr12:123532314	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188026.13	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565291	chr15:81565306	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(3)	.	.	.
ENAH	CBLB	-/.	-/.	chr1:225578640	chr3:105786074	intron	intron	translocation	0	0	0	2	5	low	.	.	.	.	.	ENSG00000154380.17	ENSG00000114423.23	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNT2	FAM83B	+/.	+/.	chr1:230187481	chr6:54859661	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000143641.10	ENSG00000168143.9	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664203	chr19:30664276	intron	intron	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC104465.1(74383),AC092810.3(31644)	AC104465.1(74427),AC092810.3(31600)	./.	./.	chr1:209075859	chr1:209075903	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(14),low_entropy(6)	.	.	.
AC106738.2	.	-/.	./.	chr16:54938259	KI270733.1:145499	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000259725.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	chr8:88881403	chr8:88881462	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000253553.7	ENSG00000253553.7	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
INTS5(483),C11orf98(9032),LBHD1(9032)	INTS5(492),C11orf98(9023),LBHD1(9023)	./.	./.	chr11:62653785	chr11:62653794	intergenic	intergenic	duplication/ITD	0	0	0	105	93	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565356	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
AL022154.1(64057),AL645638.1(14488)	AL022154.1(64106),AL645638.1(14439)	./.	./.	chrX:88893915	chrX:88893964	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
NUP98	DAAM1(45879),GPR135(11738)	-/.	./.	chr11:3702355	chr14:59417284	intron	intergenic	translocation	0	0	0	437	20	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458058	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC098828.1(31263),RPS16P2(17526)	OR4F17(5817),WBP1LP11(22566)	./.	./.	chr2:20138092	chr19:122919	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275790	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
DHRS9	LDB2(223),AC106894.1(74374)	+/.	./.	chr2:169079909	chr4:16898901	intron	intergenic	translocation	0	0	0	35	83	low	.	.	.	.	.	ENSG00000073737.17	.	.	.	upstream	downstream	low_entropy	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702354	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(13),mismatches(1)	.	.	.
CEBPE	LINC00486	-/-	+/-	chr14:23117712	chr2:32916556	CDS	intron	translocation/5'-5'	0	0	0	43	1606	low	.	.	Basic_region_leucine_zipper(7%)|	.	.	ENSG00000092067.6	ENSG00000230876.8	.	.	upstream	downstream	duplicates	.	.	.
CD47	CD47	-/.	-/.	chr3:108049095	chr3:108049110	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000196776.17	ENSG00000196776.17	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
LINC01791	TSHZ3	+/.	-/.	chr19:31183173	chr19:31183233	intron	intron	duplication/3'-3'	0	0	0	64	64	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000121297.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC097459.1	AC097459.1	+/.	+/.	chr4:100459169	chr4:100459184	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000286150.1	ENSG00000286150.1	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
LINC01791	TSHZ3	+/.	-/.	chr19:31183173	chr19:31183239	intron	intron	duplication/3'-3'	0	0	0	64	64	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000121297.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
FAM83B	.	+/.	./.	chr6:54859661	GL000220.1:158236	intron	intergenic	translocation	0	0	0	3	.	low	.	.	.	.	.	ENSG00000168143.9	.	.	.	downstream	upstream	duplicates(5),uninteresting_contigs(2)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396539	chr8:22396554	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC060809.1	USP9YP6	+/.	-/.	chr15:81565296	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
MRPS22	PRKN	+/.	-/.	chr3:139172936	chr6:162063547	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000175110.13	ENSG00000185345.23	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
INTS5(552),C11orf98(8963),LBHD1(8963)	AC016694.1(51914),RBMY2WP(38078)	./.	./.	chr11:62653854	chrY:22724773	intergenic	intergenic	translocation	0	0	0	105	1708	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734416	chr6:46734431	intron	intron	duplication/ITD	0	0	0	49	46	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16366),AC016134.1(9502)	./.	./.	chr15:41599880	chr15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(48),low_entropy(10)	.	.	.
RNU6-440P(65122),AC069148.1(40105)	FP236383.3	./.	+/.	chr2:201992665	chr21:8399951	intergenic	intron	translocation	0	0	0	2	729	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916554	chr21:8400239	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LY6E(14625),C8orf31(752)	AP005436.1	./.	-/.	chr8:143038457	chr11:88092441	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214787	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262486	chr6:42262585	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(10)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262467	chr6:42262483	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KATNIP	LINC00470	+/.	-/.	chr16:27692803	chr18:1313986	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000047578.13	ENSG00000132204.14	.	.	upstream	downstream	mismatches(1)	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077777	chrX:11077786	intron	intron	duplication/ITD	0	0	0	28	24	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	duplicates(11),low_entropy(3)	.	.	.
AC068533.2(19144),AC068533.1(20216)	AC016074.2	./.	+/.	chr7:66050688	chr8:125677401	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000286122.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565309	chr15:81565318	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MIR3663HG(22832),RPL12P26(4228)	MIR3663HG(22851),RPL12P26(4209)	./.	./.	chr10:117191940	chr10:117191959	intergenic	intergenic	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC008014.1	FP671120.4	+/.	+/.	chr12:46670815	chr21:8216918	intron	intron	translocation	0	0	0	0	603	low	.	.	.	.	.	ENSG00000257261.6	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	ATXN7	+/+	+/-	chr14:105867114	chr3:63900074	exon	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000163635.20	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820101	KI270733.1:133665	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PRRT2	HNRNPA3P8(184084),AC108740.1(40763)	+/+	./-	chr16:29813715	chr3:80401318	CDS	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000167371.21	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
CYTOR(8804),RPS14P5(9346)	CYTOR(8857),RPS14P5(9293)	./.	./.	chr2:87645544	chr2:87645597	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(4)	.	.	.
MXD4	AL353611.2(21963),OLFM1(57605)	-/.	./.	chr4:2261628	chr9:135017817	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000123933.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UBN2	AC016304.1(54229),TMCO5A(376607)	+/+	./-	chr7:139231648	chr15:37545332	CDS	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000157741.15	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CCNT2-AS1	CCNT2-AS1	-/.	-/.	chr2:134845509	chr2:134845524	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000224043.8	ENSG00000224043.8	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ADAMTS9-AS2	AL357513.1(66942),TBC1D32(167077)	+/.	./.	chr3:64736203	chr6:120912417	intron	intergenic	translocation	0	0	0	974	30	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565346	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(9),low_entropy(6)	.	.	.
AC011008.2(4339),XKR6(32270)	KLRF1	./.	+/.	chr8:10863775	chr12:9838551	intergenic	intron	translocation	0	0	0	1	1	low	.	.	.	.	.	.	ENSG00000150045.12	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683525	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
TMEM132B(44065),AC005252.2(102226)	TMEM132B(44122),AC005252.2(102169)	./.	./.	chr12:125706442	chr12:125706499	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457997	chr6:100458068	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785777	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
ANGPT1	SLC9A3R2	-/.	+/.	chr8:107291888	chr16:2027409	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000154188.10	ENSG00000065054.14	.	.	upstream	downstream	mismatches	.	.	.
AC012494.1	AC012494.1	-/.	-/.	chr2:77684834	chr2:77684849	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000227088.2	ENSG00000227088.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ACMSD	CCNT2-AS1	+/.	-/.	chr2:134845509	chr2:134845524	intron	intron	duplication/3'-3'	0	0	0	21	21	low	.	.	.	.	.	ENSG00000153086.14	ENSG00000224043.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00499	TRERF1	+/.	-/.	chr4:138402531	chr6:42262584	intron	intron	translocation/3'-3'	0	0	0	0	2501	low	.	.	.	.	.	ENSG00000251372.6	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC4A4	SLC4A4	+/.	+/.	chr4:71466932	chr4:71466947	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000080493.18	ENSG00000080493.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
NDRG2	TRERF1	-/-	-/+	chr14:21021418	chr6:42262467	exon	intron	translocation/5'-5'	0	0	0	0	3576	low	.	.	Ndr_family(34%)|	.	.	ENSG00000165795.23	ENSG00000124496.12	.	.	upstream	upstream	mismatches(1)	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16348),AC016134.1(9520)	./.	./.	chr15:41599880	chr15:41599937	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NTNG2	ZNF267(33823),AC034105.5(980)	+/.	./.	chr9:132201072	chr16:31951180	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000196358.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702359	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(11),mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396540	chr8:22396553	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(129),low_entropy(25)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	NELL1	./.	+/.	chr1:188690471	chr11:20857321	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165973.19	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00824	SALL2	-/.	-/.	chr8:128417440	chr14:21526052	intron	intron	translocation	0	0	0	2	3	low	.	.	.	.	.	ENSG00000254275.6	ENSG00000165821.12	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016766.1	MED13	-/.	-/.	chr2:164102757	chr17:61947469	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000237844.2	ENSG00000108510.10	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02565(107115),RNU6-737P(6293)	LINC02565(107124),RNU6-737P(6284)	./.	./.	chr18:57278309	chr18:57278318	intergenic	intergenic	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269697	chr14:77269795	intron	intron	duplication/ITD	0	0	0	20	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
AC096644.3(28000),AC096644.2(16483)	LINC02620	./.	-/.	chr1:220432033	chr10:104479900	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392889	chr11:88092445	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
ZNF808	ZNF808	+/.	+/.	chr19:52561159	chr19:52561213	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000198482.14	ENSG00000198482.14	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479811	chr10:104479822	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
AC008014.1(15861),AC079906.1(77859)	LSM14B	./.	+/.	chr12:46892645	chr20:62131771	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR4277(2504),AC112176.1(13777)	SEC1P	./.	+/.	chr5:1711372	chr19:48668651	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000232871.8	.	.	upstream	upstream	mismatches(1)	.	.	.
RGS9	RGS9	+/.	+/.	chr17:65202445	chr17:65202458	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000108370.17	ENSG00000108370.17	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
EML1	EML1	+/.	+/.	chr14:99796191	chr14:99796202	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(15),merge_adjacent	.	.	.
SFN(3787),GPN2(7889)	SFN(3851),GPN2(7825)	./.	./.	chr1:26868243	chr1:26868307	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2),merge_adjacent	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83134543	chr16:83134596	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CSGALNACT1	SCAI	-/.	-/.	chr8:19681397	chr9:124984492	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000147408.14	ENSG00000173611.18	.	.	upstream	downstream	mismatches(1)	.	.	.
CSAG3	CSAG3	+/.	+/.	chrX:152758803	chrX:152758894	intron	intron	duplication/ITD	0	0	0	16	13	low	.	.	.	.	.	ENSG00000268916.6	ENSG00000268916.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC044798.3	AC044798.3	-/.	-/.	chr16:49155816	chr16:49155863	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000287469.1	ENSG00000287469.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FREM2	FREM2	+/.	+/.	chr13:38813459	chr13:38813555	intron	intron	duplication/ITD	0	0	0	5	2	low	.	.	.	.	.	ENSG00000150893.11	ENSG00000150893.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.11(2063),FP236383.6(393)	./.	./.	chr20:20367921	chr21:8464861	intergenic	intergenic	translocation	0	0	0	28	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KRTAP10-4	KRTAP10-4	+/.	+/.	chr21:44599128	chr21:44599172	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000215454.6	ENSG00000215454.6	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886353	chr10:44886362	intron	intron	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765663	chr11:121765672	intron	intron	duplication/ITD	0	0	0	23	11	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392887	chr11:88092443	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	duplicates	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092435	intron	intron	duplication	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092343	chr11:88092436	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	AC044836.1(51792),RNU105C(30989)	+/.	./.	chr2:32916556	chr8:54299698	intron	intergenic	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
EML1	EML1	+/.	+/.	chr14:99796192	chr14:99796201	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(13),merge_adjacent	.	.	.
ADAMTS9-AS2	ALDH1L2	+/.	-/.	chr3:64736203	chr12:105046192	intron	intron	translocation/3'-3'	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000136010.14	.	.	upstream	downstream	duplicates(21),mismatches(2)	.	.	.
TRG-AS1	MED15	+/.	+/.	chr7:38371928	chr22:20548540	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281103.2	ENSG00000099917.17	.	.	upstream	upstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269684	chr14:77269782	intron	intron	duplication/ITD	0	0	0	20	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNU1-154P(720),AC239860.2(27385)	RNU1-154P(729),AC239860.2(27376)	./.	./.	chr1:145432413	chr1:145432422	intergenic	intergenic	duplication/ITD	0	0	0	188	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021209	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(68),low_entropy(1)	.	.	.
KLHL26	AL157778.1(423241),TEX101P1(341695)	+/.	./.	chr19:18661533	chrX:99315302	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000167487.12	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	AC011474.1	+/+	-/-	chr14:106419209	chr19:29447568	exon	intron	translocation	0	0	0	86	53	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380594	chr20:36380607	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(17),low_entropy(8),merge_adjacent	.	.	.
ADAMTS9-AS2	ALDH1L2	+/.	-/.	chr3:64736203	chr12:105046190	intron	intron	translocation/3'-3'	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000136010.14	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
TAFA2	FUT8	-/.	+/.	chr12:62071326	chr14:65662720	intron	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000198673.10	ENSG00000033170.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ATXN7	LINC01597	+/.	-/.	chr3:63900074	chr20:30284066	intron	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	ENSG00000205611.5	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392889	chr11:88092441	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
AC074212.1	KDM4B	+/+	+/+	chr19:45768819	chr19:5090392	exon	intron	duplication	0	0	0	0	19	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000259605.3	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	C12orf45	+/.	+/.	chr3:64736203	chr12:105046190	intron	intron	translocation	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000151131.11	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
AC023034.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565296	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	downstream	low_entropy	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565296	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
NXF2(27555),NXF2B(6119)	NXF2(27646),NXF2B(6028)	./.	./.	chrX:102354277	chrX:102354368	intergenic	intergenic	duplication/ITD	0	0	0	0	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TPK1	AC124947.1	-/.	-/.	chr7:144654438	chr12:93375531	intron	intron	translocation	0	0	0	1	30	low	.	.	.	.	.	ENSG00000196511.14	ENSG00000257252.6	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262498	chr6:42262507	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
BCL6	BCL6	-/.	-/.	chr3:187737348	chr3:187737361	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000113916.18	ENSG00000113916.18	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
RNU7-29P(10972),AL627313.1(26973)	FP236383.3	./.	+/.	chr1:26613404	chr21:8441947	intergenic	intron	translocation	0	0	0	7	47	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396551	chr8:22396560	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
RPL9P13(63118),AC078851.1(28496)	LINC02620	./.	-/.	chr2:139796400	chr10:104479908	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262476	chr6:42262575	intron	intron	duplication/ITD	0	0	0	3576	3473	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC012085.1(14957),CRADD(20832)	AC012085.1(15002),CRADD(20787)	./.	./.	chr12:93656543	chr12:93656588	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
SLC39A14	WWOX	+/.	+/.	chr8:22396540	chr16:78266807	intron	intron	translocation/3'-3'	0	0	0	308	0	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000186153.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AL354855.1(21524),SNORD62A(91627)	LINC01495	./.	-/.	chr9:131394038	chr11:22480925	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255323.6	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	C12orf45	+/.	+/.	chr3:64736203	chr12:105046188	intron	intron	translocation	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000151131.11	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
ZNF808	ZNF701	+/.	+/.	chr19:52561159	chr19:52561174	intron	intron	duplication	0	0	0	13	13	low	.	.	.	.	.	ENSG00000198482.14	ENSG00000167562.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
THORLNC(2321),LINC01956(542394)	FBP1	./.	-/.	chr2:118224571	chr9:94621628	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000165140.11	.	.	upstream	downstream	mismatches(1)	.	.	.
IFIT2	LIPA	+/.	-/.	chr10:89293680	chr10:89293715	intron	intron	duplication/3'-3'	0	0	0	5	5	low	.	.	.	.	.	ENSG00000119922.11	ENSG00000107798.18	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
RPSAP2(46058),NOP56P1(4671)	RPSAP2(46113),NOP56P1(4616)	./.	./.	chr6:28778962	chr6:28779017	intergenic	intergenic	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SGMS1-AS1	.	+/.	./.	chr10:50624032	KI270733.1:176187	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000226200.7	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392796	chr1:90392809	intron	intron	duplication/ITD	0	0	0	326	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(91),low_entropy(31)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902250	chr4:94902263	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(400),low_entropy(26)	.	.	.
NCMAP	RADIL	+/.	-/.	chr1:24566513	chr7:4819762	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000184454.7	ENSG00000157927.17	.	.	downstream	downstream	mismatches(1)	.	.	.
GPHN	ARNT2	+/.	+/.	chr14:66801599	chr15:80508509	intron	intron	translocation	0	0	0	2	3	low	.	.	.	.	.	ENSG00000171723.16	ENSG00000172379.21	.	.	upstream	downstream	mismatches(1)	.	.	.
AC007128.2(92198),NXPH1(68)	FP236383.3	./.	+/.	chr7:8433541	chr21:8392570	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	USP9YP6	+/.	-/.	chr15:81565302	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176287	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092323	chr11:88092422	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDH8(129379),RNU6-21P(21126)	CDH8(129423),RNU6-21P(21082)	./.	./.	chr16:62166414	chr16:62166458	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(30),low_entropy(3)	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077760	chrX:11077831	intron	intron	duplication/ITD	0	0	0	24	28	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131208	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	chr3:96618115	chr21:8397443	5'UTR	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000269028.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	LINC00316(21890),MTCO1P3(12311)	+/.	./.	chr21:8214786	chr21:45363880	intron	intergenic	inversion	0	0	0	2358	8	low	.	.	.	.	.	ENSG00000278996.1	.	.	.	upstream	upstream	mismatches	.	.	.
NRIP3	GTF2IRD1P1	-/-	-/-	chr11:9003961	chr7:66824569	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000175352.11	ENSG00000230583.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8447432	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
PTPRN2	FP671120.4	-/.	+/.	chr7:158570584	chr21:8214792	intron	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000155093.19	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481682	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(2)	.	.	.
INTS5(553),C11orf98(8962),LBHD1(8962)	AL139381.1	./.	-/.	chr11:62653855	chr13:94977307	intergenic	intron	translocation	0	0	0	105	4	low	.	.	.	.	.	.	ENSG00000287635.1	.	.	downstream	upstream	mismatches(1)	.	.	.
SERPINB1	RNA5SP430(26077),AC099511.1(220049)	-/.	./.	chr6:2841670	chr16:75887234	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000021355.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312080	chr11:22312095	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092443	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392887	chr11:88092435	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	duplicates	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092322	chr11:88092410	intron	intron	duplication/ITD	0	0	0	783	847	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC00364(44532),AL512452.1(153098)	-/.	./.	chr10:104479903	chr13:67424526	intron	intergenic	translocation	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP98	SMAGP	-/.	-/.	chr11:3702359	chr12:51248435	intron	intron	translocation	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000170545.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	GDA	./.	+/.	chr3:103984260	chr9:72149977	intergenic	intron	translocation	0	0	0	6	1	low	.	.	.	.	.	.	ENSG00000119125.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00940	FP671120.7(395),5_8S_rRNA(872)	-/.	./.	chr12:1933581	chr21:8255909	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02864	.	-/.	./.	chr18:73168245	KI270733.1:175791	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263711.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SIM1	TMCC3(113771),KRT19P2(69819)	-/.	./.	chr6:100458043	chr12:94764328	intron	intergenic	translocation	0	0	0	69	21	low	.	.	.	.	.	ENSG00000112246.10	.	.	.	downstream	downstream	low_entropy(1)	.	.	.
TRERF1	AL161616.1(177797),RXFP2(78030)	-/.	./.	chr6:42262599	chr13:31661496	intron	intergenic	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RUFY4(18121),CXCR2(16587)	.	./.	./.	chr2:218108702	GL000220.1:114265	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
LINC00486	NCAPG2	+/.	-/.	chr2:32916556	chr7:158632014	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000146918.20	.	.	downstream	upstream	mismatches	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	chr2:237784949	chr15:45462787	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000124831.19	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FLJ31356	ANGPT1	-/.	-/.	chr2:28394136	chr8:107291889	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000229951.5	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
C16orf95	NOTCH2(12178),RNU6-465P(14017)	-/-	./-	chr16:87317152	chr1:120112957	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RADIL	LINC00540	-/.	+/.	chr7:4819762	chr13:22123376	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157927.17	ENSG00000276476.3	.	.	downstream	upstream	mismatches(1)	.	.	.
SH3TC1	.	+/.	./.	chr4:8239876	GL000220.1:114149	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
XKR6	ARNT2	-/.	+/.	chr8:11081751	chr15:80508509	intron	intron	translocation	0	0	0	2	3	low	.	.	.	.	.	ENSG00000171044.11	ENSG00000172379.21	.	.	downstream	downstream	mismatches(1)	.	.	.
NRXN1	LINC00486	-/-	+/-	chr2:50346877	chr2:32916597	CDS	intron	deletion/5'-5'	0	0	0	3	46	low	.	.	EGF-like_domain(100%),Laminin_G_domain(82%)|	.	.	ENSG00000179915.24	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
AC009505.1(61937),ECRG4(38923)	WWC1	./.	+/.	chr2:106024323	chr5:168337916	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000113645.15	.	.	downstream	upstream	mismatches(1)	.	.	.
ATXN7	CBWD4P(62437),FP326651.1(197)	+/.	./.	chr3:63900074	chr9:65385452	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CR392039.1(648),CR392039.3(8418)	HLCS	./.	-/.	chr21:8988078	chr21:36792523	intergenic	intron	inversion	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000159267.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AL139220.2	AL139220.2	+/.	+/.	chr1:44069470	chr1:44069483	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000230615.7	ENSG00000230615.7	.	.	upstream	downstream	duplicates(5),low_entropy(7)	.	.	.
AL606468.1(18421),LINC02608(16598)	AC025580.2	./.	+/.	chr1:212208680	chr15:45462222	intergenic	intron	translocation	0	0	0	14	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	GPC3	+/.	-/.	chr15:81565298	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
ILKAP	FP236383.3	-/.	+/.	chr2:238203140	chr21:8411576	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000132323.9	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
RABGAP1L-DT	MAP4K4	-/.	+/.	chr1:174121817	chr2:101785789	intron	intron	translocation	0	0	0	0	710	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000071054.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009505.1(61936),ECRG4(38924)	AC012060.1(92676),LINC02248(36443)	./.	./.	chr2:106024322	chr15:26358594	intergenic	intergenic	translocation	0	0	0	1	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	AP001599.1	+/.	+/.	chr21:8395069	chr21:26914103	intron	intron	duplication	0	0	0	0	15	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000223563.1	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC245123.1	AC245123.1	-/.	-/.	chr8:2565381	chr8:2565441	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000277526.5	ENSG00000277526.5	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	AL355309.1(99987),RAC1P4(16222)	./.	./.	chr3:103984260	chrX:137425036	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479829	chr10:104479838	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683468	chr15:81683477	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC021546.1	AC021546.1	-/.	-/.	chr8:105155556	chr8:105155596	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000254041.1	ENSG00000254041.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092651.2	AC092651.2	+/.	+/.	chr2:87105973	chr2:87105988	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000287931.1	ENSG00000287931.1	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458065	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916414	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236817	chr15:33236828	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(64),low_entropy(21)	.	.	.
DTNBP1(65879),ARPC3P5(205845)	INTS5(552),C11orf98(8963),LBHD1(8963)	./.	./.	chr6:15728937	chr11:62653854	intergenic	intergenic	translocation	0	0	0	654	105	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC044798.3	AC115100.1(211620),AC090506.1(87582)	-/.	./.	chr16:49155859	chr18:30625693	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916413	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262579	3'UTR	intron	translocation	0	0	0	0	3473	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016766.1	CYP3A7-CYP3A51P	-/.	-/.	chr2:164102755	chr7:99706823	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000237844.2	ENSG00000282301.4	.	.	upstream	downstream	mismatches(1)	.	.	.
SHISA9	SHISA9	+/.	+/.	chr16:12943348	chr16:12943357	intron	intron	duplication/ITD	0	0	0	54	51	low	.	.	.	.	.	ENSG00000237515.9	ENSG00000237515.9	.	.	upstream	downstream	duplicates(3)	.	.	.
GALNT2	.	+/.	./.	chr1:230175600	KI270733.1:125836	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000143641.10	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
MIR34AHG(11938),H6PD(23930)	SNHG22	./.	+/.	chr1:9210844	chr18:49814599	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000267322.2	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02086	CSAG3	+/.	+/.	chr17:48677969	chrX:152758876	intron	intron	translocation	0	0	0	4	16	low	.	.	.	.	.	ENSG00000244649.5	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
EYA1	EYA1	-/.	-/.	chr8:71463569	chr8:71463641	intron	intron	duplication/ITD	0	0	0	3	2	low	.	.	.	.	.	ENSG00000104313.20	ENSG00000104313.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
UBE2FP2(4909),AC138305.1(128284)	Z93929.1(11490),MDM4P1(21526)	./.	./.	chr16:63185980	chrX:17911823	intergenic	intergenic	translocation	0	0	0	35	25	low	.	.	.	.	.	.	.	.	.	downstream	downstream	low_entropy	.	.	.
PRRT2	TEDC1	+/+	+/-	chr16:29813715	chr14:105493961	CDS	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000167371.21	ENSG00000185347.18	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565303	chr15:81565312	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
INSL5	AC087341.1(69215),AC104257.1(94382)	-/.	./.	chr1:66800424	chr8:131214163	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000172410.4	.	.	.	downstream	upstream	mismatches(1)	.	.	.
OTX2P1(77424),PCSK5(88645)	OTX2P1(77479),PCSK5(88590)	./.	./.	chr9:75801999	chr9:75802054	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565363	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(3),low_entropy(8)	.	.	.
AL135790.1(117314),AL161788.1(27840)	AL135790.1(117368),AL161788.1(27786)	./.	./.	chr9:10749517	chr9:10749571	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SGMS1-AS1	.	+/.	./.	chr10:50624032	KI270733.1:131108	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000226200.7	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565356	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
LINC00486	LINC00486	+/.	+/.	chr2:32916500	chr2:32916556	intron	intron	inversion/3'-3'	0	0	0	908	1606	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000230876.8	.	.	downstream	downstream	hairpin	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674876	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IGH-@-ext	LINC02714(167750),AP003062.2(13558)	+/+	./+	chr14:105867114	chr11:134931560	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	IGH-.g@-ext	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FRMD5	SRMP1(7266),RNA5SP486(5253)	-/.	./.	chr15:44009763	chr20:47867938	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171877.21	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PRRX1	.	+/.	./.	chr1:170689847	KI270733.1:148270	intron	intergenic	translocation	0	0	0	3	.	low	.	.	.	.	.	ENSG00000116132.12	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
ERI3	ARNTL	-/.	+/.	chr1:44320094	chr11:13354188	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000117419.16	ENSG00000133794.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005244.2(148981),AC084167.1(26490)	AC005244.2(148996),AC084167.1(26475)	./.	./.	chr17:12364248	chr17:12364263	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FAM149A(11480),FLJ38576(4885)	RILPL1	./.	-/.	chr4:186184147	chr12:123532314	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188026.13	.	.	upstream	upstream	mismatches(1)	.	.	.
CEBPE	LINC00486	-/-	+/-	chr14:23117710	chr2:32916556	CDS	intron	translocation/5'-5'	0	0	0	43	1606	low	.	.	Basic_region_leucine_zipper(8%)|	.	.	ENSG00000092067.6	ENSG00000230876.8	.	.	upstream	downstream	low_entropy	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396488	chr8:22396586	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
HGS	FP671120.4	+/.	+/.	chr17:81688571	chr21:8214792	intron	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000185359.14	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
FREM2	FREM2	+/.	+/.	chr13:38813459	chr13:38813512	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000150893.11	ENSG00000150893.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565348	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AL356010.2	AP001823.1(3433),ELMOD1(755)	+/.	./.	chr1:238389817	chr11:107590336	intron	intergenic	translocation	0	0	0	0	683	low	.	.	.	.	.	ENSG00000234464.2	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RILPL1	AC009093.2	-/.	+/.	chr12:123532314	chr16:29187338	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188026.13	ENSG00000260517.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679810	chr21:39679823	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL022154.1(56202),AL645638.1(22343)	AL022154.1(56242),AL645638.1(22303)	./.	./.	chrX:88886060	chrX:88886100	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8217206	intron	intron	translocation	0	0	0	1606	20	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
PRPF40A	CR392039.1(646),CR392039.3(8420)	-/.	./.	chr2:152717656	chr21:8988076	5'UTR	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000196504.19	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	AL133464.1(41584),LINC00261(34530)	+/.	./.	chr8:22396534	chr20:22513141	intron	intergenic	translocation	0	0	0	308	0	low	.	.	.	.	.	ENSG00000104635.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC020741.1	AC093627.22	-/-	-/+	chr4:61428174	chr7:117610	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000205682.2	ENSG00000287883.1	.	.	upstream	upstream	mismatches(2)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679818	chr21:39679827	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AAK1	AC023034.1	-/.	+/.	chr2:69640055	chr15:81565363	intron	intron	translocation/5'-5'	0	0	0	0	199	low	.	.	.	.	.	ENSG00000115977.21	ENSG00000259594.6	.	.	upstream	downstream	mismatches(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702355	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(9),mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916565	chr21:8214784	intron	intron	translocation	0	0	0	1588	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398687	chr7:54398700	intron	intron	duplication/ITD	0	0	0	19	0	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PGAP4	RANBP10	-/.	-/.	chr9:101512105	chr16:67737095	intron	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000165152.9	ENSG00000141084.11	.	.	downstream	downstream	mismatches(1)	.	.	.
VWA8	HNRNPM	-/.	+/.	chr13:41961032	chr19:8485224	5'UTR	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	ENSG00000102763.18	ENSG00000099783.12	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565298	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	downstream	low_entropy	.	.	.
AC013400.1(4319),WDR35(3375)	AC013400.1(4333),WDR35(3361)	./.	./.	chr2:19906888	chr2:19906902	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
LINC01060	UBE2W	+/.	-/.	chr4:188533876	chr8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378.6	ENSG00000104343.21	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683500	chr15:81683513	intron	intron	duplication/ITD	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8403958	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392889	chr11:88092437	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
SRRM4	SRRM4	+/.	+/.	chr12:119137594	chr12:119137603	intron	intron	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	ENSG00000139767.10	ENSG00000139767.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAPRE3(5362),TMEM214(329)	SLC25A29	./.	-/.	chr2:27032581	chr14:100291617	intergenic	3'UTR	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000197119.13	.	.	downstream	downstream	mismatches(1)	.	.	.
RBFOX3(64112),AC233701.1(17772)	FP671120.4	./.	+/.	chr17:79580260	chr21:8209535	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3425),ELMOD1(763)	HTR2A(596),GNG5P5(409410)	./.	./.	chr11:107590328	chr13:46897672	intergenic	intergenic	translocation	0	0	0	683	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	DYSF	+/.	+/.	chr2:32916556	chr2:71594236	intron	intron	inversion/3'-3'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135636.14	.	.	downstream	downstream	mismatches	.	.	.
PROM1(9729),AC108063.2(20126)	PROM1(9792),AC108063.2(20063)	./.	./.	chr4:16094107	chr4:16094170	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
FP236383.3	HLCS	+/.	-/.	chr21:8392571	chr21:36792523	intron	intron	inversion	0	0	0	11	0	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000159267.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8448165	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
C2orf83	C2orf83	-/.	-/.	chr2:227643250	chr2:227643286	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000042304.13	ENSG00000042304.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
L29074.2	FP236383.3	+/+	+/+	chrX:147911827	chr21:8399951	exon	intron	translocation	0	0	0	0	729	low	.	.	.	.	.	ENSG00000274086.1	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
GPRIN1(8931),SNCB(995)	FP236383.3	./.	+/.	chr5:176619087	chr21:8442062	intergenic	intron	translocation	0	0	0	0	35	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	.	./.	./.	chr3:103984260	GL000220.1:158219	intergenic	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
ADAMTS9-AS2	C12orf45	+/.	+/.	chr3:64736203	chr12:105046186	intron	intron	translocation	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000151131.11	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
LINC00316(21890),MTCO1P3(12311)	.	./.	./.	chr21:45363880	GL000220.1:158224	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
RPS11P7(23220),AL592164.2(19201)	RPS11P7(23235),AL592164.2(19186)	./.	./.	chrX:39889108	chrX:39889123	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683455	chr15:81683470	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(74),low_entropy(27)	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521014	chr16:71521075	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DHFR	HMCN2	-/.	+/.	chr5:80651216	chr9:130363494	intron	intron	translocation	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000148357.16	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
SH3TC1	.	+/.	./.	chr4:8239876	KI270733.1:176084	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
ARHGAP10	ARHGAP10	+/.	+/.	chr4:147798728	chr4:147798739	intron	intron	duplication/ITD	0	0	0	26	0	low	.	.	.	.	.	ENSG00000071205.12	ENSG00000071205.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MICAL3	.	-/.	./.	chr22:17796203	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000243156.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TENM3	SYT1	+/.	+/.	chr4:182445646	chr12:79198619	intron	intron	translocation/5'-5'	0	0	0	4	17	low	.	.	.	.	.	ENSG00000218336.9	ENSG00000067715.14	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092330	chr11:88092429	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
AC007128.2(92198),NXPH1(68)	.	./.	./.	chr7:8433541	KI270733.1:125835	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
TCF7L2	EML1	+/.	+/.	chr10:113117387	chr14:99796187	intron	intron	translocation/3'-3'	0	0	0	266	1790	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000066629.18	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262479	chr6:42262488	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),low_entropy(4),merge_adjacent	.	.	.
AL627095.1(5384),ZNF669(8511)	AL627095.1(5446),ZNF669(8449)	./.	./.	chr1:247091451	chr1:247091513	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC115100.1(211620),AC090506.1(87582)	AC115100.1(211661),AC090506.1(87541)	./.	./.	chr18:30625693	chr18:30625734	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
UOX	UOX	-/.	-/.	chr1:84396604	chr1:84396620	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000240520.7	ENSG00000240520.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPR157(17214),MIR34AHG(1695)	.	./.	./.	chr1:9146316	KI270733.1:125836	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419120	chr14:106419207	exon	exon	duplication/3'-3'	0	0	0	71	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
ADAM15	LINC00486	+/.	+/.	chr1:155053107	chr2:32916556	intron	intron	translocation	0	0	0	0	1606	low	.	.	.	.	.	ENSG00000143537.14	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
DOCK10(352123),NYAP2(5119)	AC124947.1	./.	-/.	chr2:225394591	chr12:93375505	intergenic	intron	translocation	0	0	0	14	30	low	.	.	.	.	.	.	ENSG00000257252.6	.	.	upstream	upstream	mismatches(1)	.	.	.
AC134503.1(4562),GAPDHP36(6417)	AC134503.1(4573),GAPDHP36(6406)	./.	./.	chr3:180205774	chr3:180205785	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674866	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	MMP15	./.	+/.	chr2:106577227	chr16:58046059	intergenic	3'UTR	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000102996.5	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	RPL10P5(5786),RANBP2(796)	+/.	./.	chr2:32916556	chr2:108718686	intron	intergenic	deletion	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC02458	TTLL5	-/.	+/.	chr12:89130233	chr14:75773979	intron	intron	translocation	0	0	0	5	15	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000119685.20	.	.	downstream	downstream	mismatches(1)	.	.	.
BICC1	AC018445.6(26773),AC068473.3(8847)	+/.	./.	chr10:58688003	chr18:79567613	intron	intergenic	translocation	0	0	0	14	1	low	.	.	.	.	.	ENSG00000122870.12	.	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
EEF1DP6(98224),LINC01777(137904)	LINC00486	./.	+/.	chr1:4274123	chr2:32916556	intergenic	intron	translocation	0	0	0	0	1606	low	.	.	.	.	.	.	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
RGS12	.	+/+	./+	chr4:3386018	GL000220.1:158230	exon	intergenic	translocation	0	0	0	0	.	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143152	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143096	chr11:82143105	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SGMS1-AS1	FP236383.3	+/.	+/.	chr10:50624032	chr21:8397820	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000226200.7	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
SPANXD(94015),MAGEC3(45562)	SPANXD(94075),MAGEC3(45502)	./.	./.	chrX:141792754	chrX:141792814	intergenic	intergenic	duplication/ITD	0	0	0	62	62	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
MIR4277(2504),AC112176.1(13777)	AL139243.1	./.	+/.	chr5:1711372	chr10:98447700	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287261.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LEMD1-DT(27364),CDK18(8208)	NCOA5LP(16498),CNEP1R1(39182)	./.	./.	chr1:205496388	chr16:49985228	intergenic	intergenic	translocation	0	0	0	1	20	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117369	chr10:113117380	intron	intron	duplication/ITD	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
HERPUD2	HERPUD2	-/.	-/.	chr7:35674450	chr7:35674463	intron	intron	duplication/ITD	0	0	0	0	59	low	.	.	.	.	.	ENSG00000122557.11	ENSG00000122557.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	chr15:45462496	chr15:45462594	intron	intron	duplication/ITD	0	0	0	0	4	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MED6P1(8598),AL353149.1(200708)	FXNP1(22765),NRXN3(87330)	./.	./.	chr10:88058421	chr14:78083043	intergenic	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NRP1	CHRNB4	-/.	-/.	chr10:33334709	chr15:78672957	5'UTR	intron	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000099250.18	ENSG00000117971.12	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565294	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275784	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(7),low_entropy(1),merge_adjacent	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298009	chr7:32298018	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(2),low_entropy(3),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565364	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236820	chr15:33236829	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(2),low_entropy(3),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479809	chr10:104479907	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(2),low_entropy(3),merge_adjacent	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736203	chr3:64736216	intron	intron	duplication/ITD	0	0	0	974	81	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AC060809.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565296	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	downstream	low_entropy	.	.	.
AC019211.1	AC019211.1	+/.	+/.	chr2:220257282	chr2:220257317	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000239498.1	ENSG00000239498.1	.	.	upstream	downstream	duplicates(13),low_entropy(3)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	KI270733.1:154138	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092349	chr11:88092446	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(14),low_entropy(3),merge_adjacent	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8403958	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
INTS6P1(97297),GCSHP1(69766)	AGAP2-AS1	./.	+/.	chr5:39818810	chr12:57727485	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255737.2	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAH11	VSTM4	+/+	-/+	chr7:21543685	chr10:49021807	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000105877.18	ENSG00000165633.13	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683455	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(82),low_entropy(30)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10908),AP000345.1(8359)	./.	./.	chr22:23558642	chr22:23558705	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(1),merge_adjacent	.	.	.
AC097521.1(19713),ADAM20P3(14052)	CR392039.1(647),CR392039.3(8419)	./.	./.	chr4:187732042	chr21:8988077	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PRKCA	GRPEL2P1(60345),AL162573.1(102670)	+/+	./+	chr17:66302744	chr13:89039130	5'UTR	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	PLXNB2	+/.	-/.	chr2:32916556	chr22:50299313	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196576.16	.	.	downstream	downstream	mismatches	.	.	.
SORCS2	ZNF462	+/.	+/.	chr4:7676901	chr9:106864116	intron	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	ENSG00000184985.16	ENSG00000148143.13	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262487	chr6:42262496	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
CMAHP	CR381653.2(152031),NCOR1P4(1258)	-/.	./.	chr6:25343856	chr21:9528676	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
SGMS1-AS1	FP236383.3	+/.	+/.	chr10:50624032	chr21:8442050	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000226200.7	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
DLG2	GRAMD1B	-/.	+/.	chr11:84711374	chr11:123625937	intron	3'UTR	deletion/3'-3'	0	0	0	11	7	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000023171.18	.	.	downstream	upstream	mismatches(1)	.	.	.
MFF-DT	.	-/-	./+	chr2:227268528	KI270733.1:131103	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176284	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
MGAT4A(2703),LINC02611(27263)	MGAT4A(2716),LINC02611(27250)	./.	./.	chr2:98733835	chr2:98733848	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(2)	.	.	.
SGMS1	FP236383.3	-/.	+/.	chr10:50624032	chr21:8442050	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000198964.14	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396549	chr8:22396558	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(6),low_entropy(5)	.	.	.
AC008798.1(9220),AC008507.3(4773)	TTLL1	./.	-/.	chr19:29911089	chr22:43079851	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000100271.17	.	.	upstream	downstream	mismatches(1)	.	.	.
RBM34	TMEM168	-/.	-/.	chr1:235138608	chr7:112789954	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000188739.15	ENSG00000146802.13	.	.	downstream	downstream	mismatches(1)	.	.	.
FECHP1(162351),KRT8P18(179500)	FECHP1(162366),KRT8P18(179485)	./.	./.	chr3:35036205	chr3:35036220	intergenic	intergenic	duplication/ITD	0	0	0	241	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC023503.1	ADRB1	+/.	+/.	chr3:83426045	chr10:114045909	intron	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288004.1	ENSG00000043591.6	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683455	chr15:81683470	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(74),low_entropy(27)	.	.	.
LINC01198(14967),LRCH1(22243)	AC060809.1	./.	+/.	chr13:46530925	chr15:81565296	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
SLC4A7	MTHFD2P4(49056),TOMM22P4(148719)	-/.	./.	chr3:27484029	chr4:162372963	intron	intergenic	translocation	0	0	0	6	4	low	.	.	.	.	.	ENSG00000033867.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	LMNTD1(20091),RN7SKP262(110617)	-/.	./.	chr6:42262570	chr12:25668670	intron	intergenic	translocation	0	0	0	3473	10	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
POGZ	ZBTB20-AS5	-/-	+/-	chr1:151459437	chr3:114455079	5'UTR	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000143442.22	ENSG00000242290.2	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442270	intron	intron	translocation	0	0	0	1606	6	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021214	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(66),low_entropy(2),merge_adjacent	.	.	.
LINC02565(107101),RNU6-737P(6307)	LINC02565(107112),RNU6-737P(6296)	./.	./.	chr18:57278295	chr18:57278306	intergenic	intergenic	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL353611.2(21963),OLFM1(57605)	CGRRF1	./.	+/.	chr9:135017817	chr14:54510147	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100532.13	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC39A14	AP001977.1	+/.	+/.	chr8:22396540	chr11:121765692	intron	intron	translocation/3'-3'	0	0	0	308	23	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000286044.1	.	.	upstream	upstream	mismatches(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	RIPOR2	./.	-/.	chr3:31295858	chr6:24822901	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111913.20	.	.	downstream	downstream	mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3844),GPN2(7832)	./.	./.	chr1:26868241	chr1:26868300	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
SGMS1	.	-/.	./.	chr10:50624032	GL000220.1:158224	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000198964.14	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262467	chr6:42262476	intron	intron	duplication/ITD	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1)	.	.	.
PLPP4	PLPP4	+/.	+/.	chr10:120574169	chr10:120574182	intron	intron	duplication/ITD	0	0	0	65	65	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000203805.11	.	.	upstream	downstream	duplicates(46),low_entropy(12)	.	.	.
ESR1	ESR1	+/.	+/.	chr6:151669146	chr6:151669184	intron	intron	duplication/ITD	0	0	0	126	126	low	.	.	.	.	.	ENSG00000091831.24	ENSG00000091831.24	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FAM120C	AC120498.8(3992),CACNA1H(360)	-/-	./-	chrX:54085815	chr16:1152746	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184083.12	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TTLL7(35),AC104454.1(16680)	FP671120.4	./.	+/.	chr1:83999185	chr21:8214786	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches	.	.	.
AL359837.1(13525),LARP7P1(33090)	FP671120.4(1409),FP671120.10(6299)	./.	./.	chr1:203367176	chr21:8229055	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092506.1(423945),AL591888.1(347783)	RPSAP2(46118),NOP56P1(4611)	./.	./.	chr1:104650623	chr6:28779022	intergenic	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SGMS1-AS1	FP671120.4	+/.	+/.	chr10:50624032	chr21:8214786	intron	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000226200.7	ENSG00000278996.1	.	.	upstream	upstream	mismatches	.	.	.
SGMS1	.	-/.	./.	chr10:50624032	GL000220.1:114252	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000198964.14	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626678	chrX:18626687	intron	intron	duplication/ITD	0	0	0	84	83	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
SELENOP	NCAPG2	-/.	-/.	chr5:42806428	chr7:158632013	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250722.6	ENSG00000146918.20	.	.	downstream	upstream	mismatches(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3849),GPN2(7827)	./.	./.	chr1:26868243	chr1:26868305	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(2),merge_adjacent	.	.	.
ADAMTS9-AS2	EML1	+/.	+/.	chr3:64736203	chr14:99796191	intron	intron	translocation/3'-3'	0	0	0	974	1790	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000066629.18	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
AC023034.1	USP9YP6	+/.	-/.	chr15:81565300	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
TTLL7(35),AC104454.1(16680)	.	./.	./.	chr1:83999185	GL000220.1:114252	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670920	chr2:23670931	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CSAG3	CSAG3	+/.	+/.	chrX:152758797	chrX:152758866	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000268916.6	ENSG00000268916.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL358053.1(206722),AL591644.1(220959)	INTS5(508),C11orf98(9007),LBHD1(9007)	./.	./.	chr9:1756825	chr11:62653810	intergenic	intergenic	translocation	0	0	0	40	105	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916570	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
DTX2	AL133372.2	+/.	-/.	chr7:76496347	chr14:30207314	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000091073.19	ENSG00000248975.2	.	.	upstream	upstream	mismatches(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3330),MYBL1(40321)	./.	./.	chr8:66521791	chr8:66521854	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
PKNOX2	AC023034.1	+/+	+/+	chr11:125411520	chr15:81565294	exon	intron	translocation	0	0	0	11	216	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000259594.6	.	.	downstream	upstream	mismatches	.	.	.
AP001599.1	.	+/.	./.	chr21:26914103	GL000008.2:99914	intron	intergenic	translocation	0	0	0	15	.	low	.	.	.	.	.	ENSG00000223563.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702353	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
TNKS(89271),MIR124-1HG(28254)	TNKS(89286),MIR124-1HG(28239)	./.	./.	chr8:9871617	chr8:9871632	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683464	chr15:81683473	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
TTLL7(35),AC104454.1(16680)	5_8S_rRNA(2082),FP236383.3(121628)	./.	./.	chr1:83999185	chr21:8259015	intergenic	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916462	chr21:8397818	intron	intron	translocation	0	0	0	914	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
IGSF9B	.	-/.	./.	chr11:133918828	KI270733.1:133312	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000080854.16	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824748	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419184	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
GABPB2	TES	+/.	+/.	chr1:151087306	chr7:116255782	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143458.12	ENSG00000135269.18	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	LINC00316(21890),MTCO1P3(12311)	+/.	./.	chr21:8397820	chr21:45363880	intron	intergenic	inversion	0	0	0	2539	8	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	mismatches	.	.	.
AC006001.3	MYL10(432),CUX1(186176)	-/-	./+	chr7:66584429	chr7:101629728	exon	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229180.7	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565363	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83134541	chr16:83134593	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	duplicates(38),low_entropy(9)	.	.	.
CDK14	NRP1	+/.	-/.	chr7:90766754	chr10:33334709	intron	5'UTR	translocation/3'-3'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000058091.17	ENSG00000099250.18	.	.	upstream	downstream	mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3850),GPN2(7826)	./.	./.	chr1:26868241	chr1:26868306	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(13),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916559	GL000220.1:160675	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261482	chr1:162261491	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674814	chr5:20674829	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(7),low_entropy(6)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396385	chr10:104396394	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
AL357080.1(364568),AL355596.2(18646)	AL357080.1(364585),AL355596.2(18629)	./.	./.	chr6:141384594	chr6:141384611	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AP001823.1(3425),ELMOD1(763)	AC016694.1(51910),RBMY2WP(38082)	./.	./.	chr11:107590328	chrY:22724769	intergenic	intergenic	translocation	0	0	0	683	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC040174.1(49437),UBE2FP2(1519)	AC040174.1(49487),UBE2FP2(1469)	./.	./.	chr16:63179091	chr16:63179141	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(9)	.	.	.
5_8S_rRNA(2082),FP236383.3(121628)	LINC00316(21890),MTCO1P3(12311)	./.	./.	chr21:8259015	chr21:45363880	intergenic	intergenic	inversion	0	0	0	2548	8	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	chr7:129531132	chr15:45462422	intergenic	intron	translocation	0	0	0	14	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23086),AC108865.1(141161)	BICC1	./.	+/.	chr4:186749808	chr10:58688000	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000122870.12	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:160648	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	LINC02477(84335),RPS14P7(147270)	+/.	./.	chr2:32916556	chr4:160671152	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC01198(14967),LRCH1(22243)	AC060809.1	./.	+/.	chr13:46530925	chr15:81565294	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683455	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(82),low_entropy(30)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565361	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683459	chr15:81683470	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
PTPRN2	.	-/.	./.	chr7:158570584	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000155093.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419196	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
SLC4A7	TENM2	-/.	+/.	chr3:27484029	chr5:167383293	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000033867.16	ENSG00000145934.16	.	.	downstream	downstream	mismatches(1)	.	.	.
SDK1	RABEP2	+/.	-/.	chr7:3871208	chr16:28906290	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000146555.19	ENSG00000177548.13	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	AL354897.1	./.	+/.	chr1:47437186	chr9:85169822	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000285556.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008269.1	KCNC3	+/.	-/.	chr2:206862110	chr19:50315298	intron	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321.2	ENSG00000131398.15	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	AC008877.1(154569),RN7SKP157(64962)	+/.	./.	chr2:32916556	chr5:62081703	intron	intergenic	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
AL355674.1(96150),RORB-AS1(4823)	AL355674.1(96208),RORB-AS1(4765)	./.	./.	chr9:74480728	chr9:74480786	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143168	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(4),merge_adjacent	.	.	.
PAX8(20575),AC016745.1(25876)	PAX8(20590),AC016745.1(25861)	./.	./.	chr2:113299496	chr2:113299511	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
MARK1	FP671120.4	+/.	+/.	chr1:220591888	chr21:8214792	intron	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000116141.17	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
GABPB2	CYP3A7-CYP3A51P	+/.	-/.	chr1:151087305	chr7:99706823	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000143458.12	ENSG00000282301.4	.	.	downstream	downstream	mismatches(1)	.	.	.
GRM5(111193),TYR(737)	FXNP1(22768),NRXN3(87327)	./.	./.	chr11:89177138	chr14:78083046	intergenic	intergenic	translocation	0	0	0	6	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AC044798.3	AC115100.1(211620),AC090506.1(87582)	-/.	./.	chr16:49155861	chr18:30625693	intron	intergenic	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000287469.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916403	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
PTPRG	AC104078.2(26160),MIR1255B1(7796)	+/.	./.	chr3:61563137	chr4:36418570	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144724.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NHLRC2	AP001599.1	+/.	+/.	chr10:113865284	chr21:26914103	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000196865.4	ENSG00000223563.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702365	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(11),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	.	./.	./.	chr2:218108703	GL000220.1:158238	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(9),uninteresting_contigs(2)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10910),AP000345.1(8357)	./.	./.	chr22:23558642	chr22:23558707	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RGS17(21613),RNA5SP224(6325)	AC093627.22	./.	-/.	chr6:153152895	chr7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392817	chr1:90392826	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(11),low_entropy(6)	.	.	.
CTNND2	TTLL1	-/.	-/.	chr5:11817285	chr22:43079835	intron	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
SIM1	LINC01791	-/.	+/.	chr6:100458071	chr19:31183212	intron	intron	translocation/3'-3'	0	0	0	69	10	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000267777.2	.	.	downstream	upstream	mismatches(1)	.	.	.
MFF-DT	.	-/-	./+	chr2:227268528	GL000220.1:158219	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
ERI3	PTPRG	-/.	+/.	chr1:44274676	chr3:61563137	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117419.16	ENSG00000144724.20	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ALDH1L2	+/.	-/.	chr3:64736203	chr12:105046188	intron	intron	translocation/3'-3'	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000136010.14	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442312	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	11	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
AC009227.2(116358),RNA5SP107(13229)	AC009227.2(116374),RNA5SP107(13213)	./.	./.	chr2:154577178	chr2:154577194	intergenic	intergenic	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RUFY4(18122),CXCR2(16586)	AC018445.6(26773),AC068473.3(8847)	./.	./.	chr2:218108703	chr18:79567613	intergenic	intergenic	translocation	0	0	0	125	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),homopolymer(2)	.	.	.
ARNTL	AP001599.1	+/.	+/.	chr11:13354189	chr21:26914103	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000133794.20	ENSG00000223563.1	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106231128	chr14:106231191	exon	exon	duplication/3'-3'	0	0	0	8	8	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916570	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
GML	GML	+/.	+/.	chr8:142887392	chr8:142887451	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000104499.7	ENSG00000104499.7	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916409	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021208	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(70),low_entropy(1)	.	.	.
GPR157(17214),MIR34AHG(1695)	FP671120.4	./.	+/.	chr1:9146316	chr21:8209536	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
SWAP70	SWAP70	+/.	+/.	chr11:9675311	chr11:9675404	intron	intron	duplication/ITD	0	0	0	1	41	low	.	.	.	.	.	ENSG00000133789.15	ENSG00000133789.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL390763.1(59404),LINC02667(533192)	AL390763.1(59413),LINC02667(533183)	./.	./.	chr10:128379618	chr10:128379627	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GIMD1(20785),LINC02173(43926)	GPC3	./.	-/.	chr4:106389563	chrX:133661563	intergenic	intron	translocation	0	0	0	0	195	low	.	.	.	.	.	.	ENSG00000147257.15	.	.	upstream	upstream	mismatches(1)	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132189009	chr7:132189018	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TUBB4BP5(193074),ANXA5(22905)	Y_RNA(32923),AC044873.1(218501)	./.	./.	chr4:121645041	chr18:78577111	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785779	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004825.1(21671),AC004825.2(25557)	AC004825.1(21686),AC004825.2(25542)	./.	./.	chr14:70881100	chr14:70881115	intergenic	intergenic	duplication/ITD	0	0	0	8	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16346),AC016134.1(9522)	./.	./.	chr15:41599880	chr15:41599935	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
ARID4B	TMEM168	-/.	-/.	chr1:235138608	chr7:112789954	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000054267.22	ENSG00000146802.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683455	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(82),low_entropy(30)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	LINC01331(79558),ENC1(10872)	./.	./.	chr1:188690471	chr5:74616534	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADAMTS9-AS2	EML1	+/.	+/.	chr3:64736203	chr14:99796189	intron	intron	translocation/3'-3'	0	0	0	974	1790	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000066629.18	.	.	upstream	upstream	duplicates(21),mismatches(2)	.	.	.
LINC00333(73409),AL445588.1(230869)	LINC00333(73454),AL445588.1(230824)	./.	./.	chr13:84636645	chr13:84636690	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC007179.2	LINC01793	-/.	+/.	chr2:59267325	chr2:59267334	intron	intron	duplication/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000233891.8	ENSG00000222030.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114349	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
AC098828.1(31263),RPS16P2(17526)	WBP1LP12(23798)	./.	./.	chr2:20138092	chr6:71326	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125724	chr3:120125755	intron	intron	duplication/ITD	0	0	0	305	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TUBBP11(353348),RAP1BP2(78779)	.	./.	./.	chr3:103984260	GL000220.1:114247	intergenic	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785777	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	AC079313.1	+/.	+/.	chr2:32916556	chr12:54419406	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000258086.1	.	.	downstream	downstream	mismatches	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275792	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702360	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(19),mismatches(1)	.	.	.
AC073409.1(238166),ELOAP1(12691)	AC073409.1(238183),ELOAP1(12674)	./.	./.	chr2:123682611	chr2:123682628	intergenic	intergenic	duplication/ITD	0	0	0	14	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
RIMS2	RIMS2	+/.	+/.	chr8:104248892	chr8:104248927	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000176406.23	ENSG00000176406.23	.	.	upstream	downstream	low_entropy(1)	.	.	.
EML1	EML1	+/.	+/.	chr14:99796187	chr14:99796202	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(401),low_entropy(26)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117366	chr10:113117457	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
DIAPH3	BPIFB4	-/.	+/.	chr13:59944959	chr20:33094809	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139734.19	ENSG00000186191.8	.	.	downstream	downstream	mismatches(1)	.	.	.
PARD3B(44222),NRP2(17606)	PARD3B(44251),NRP2(17577)	./.	./.	chr2:205664384	chr2:205664413	intergenic	intergenic	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(30),low_entropy(2)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864041	chr9:106864116	intron	intron	duplication/ITD	0	0	0	87	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
CACNB2	AL390783.1	+/.	-/.	chr10:18220233	chr10:18220246	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000165995.22	ENSG00000235020.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PLD5(20078),AC099785.1(126365)	PLD5(20089),AC099785.1(126354)	./.	./.	chr1:242544775	chr1:242544786	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
UBE2FP2(4909),AC138305.1(128284)	SMURF2	./.	-/.	chr16:63185980	chr17:64631272	intergenic	intron	translocation	0	0	0	35	31	low	.	.	.	.	.	.	ENSG00000108854.16	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916555	chr21:8214784	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
NPAS3(33373),EGLN3(69991)	NPAS3(33433),EGLN3(69931)	./.	./.	chr14:33854236	chr14:33854296	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702361	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(11),mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481634	chr17:39481715	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
LINC02358	RPSAP2(46104),NOP56P1(4625)	+/.	./.	chr4:54857175	chr6:28779008	intron	intergenic	translocation	0	0	0	2	22	low	.	.	.	.	.	ENSG00000251256.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479822	chr10:104479831	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106231128	chr14:106231186	exon	exon	duplication/3'-3'	0	0	0	8	8	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC008269.1	TUBBP11(353348),RAP1BP2(78779)	+/.	./.	chr2:206862123	chr3:103984260	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000229321.2	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRIP3	LINC01592	-/-	-/+	chr11:9003961	chr8:68940499	5'UTR	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000175352.11	ENSG00000253658.6	.	.	upstream	upstream	mismatches(1)	.	.	.
SH3TC1	FP236383.3	+/.	+/.	chr4:8239876	chr21:8441947	intron	intron	translocation/3'-3'	0	0	0	7	47	low	.	.	.	.	.	ENSG00000125089.17	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132189019	chr7:132189028	intron	intron	duplication/ITD	0	0	0	211	211	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521072	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565294	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	downstream	low_entropy	.	.	.
COMETT	AC023034.1	-/.	+/.	chr7:116638132	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259594.6	.	.	downstream	upstream	low_entropy	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565294	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
GRB7	FP671120.4	+/.	+/.	chr17:39745629	chr21:8214784	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000141738.14	ENSG00000278996.1	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702364	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661569	chrX:133661578	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(68),low_entropy(21)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765654	chr11:121765663	intron	intron	duplication/ITD	0	0	0	16	11	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	duplicates(1)	.	.	.
ALPK3	ALPK3	+/.	+/.	chr15:84847202	chr15:84847249	intron	intron	duplication/ITD	0	0	0	60	60	low	.	.	.	.	.	ENSG00000136383.7	ENSG00000136383.7	.	.	upstream	downstream	duplicates(54),low_entropy(6)	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702360	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
C10orf143	AL355309.1(99987),RAC1P4(16222)	-/.	./.	chr10:130103977	chrX:137425036	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000237489.5	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNA5SP349(5010),SNORD39(137498)	SQSTM1P1(123822),AL445668.1(8613)	./.	./.	chr11:109125996	chr13:62530738	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702328	chr11:3702337	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479799	chr11:88092441	intron	intron	translocation	0	0	0	840	712	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
PSAT1P1(16040),AC113145.1(60225)	BX284632.1(7533),BMS1P13(3115)	./.	./.	chr8:49757361	chr9:65825005	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
USH2A	INSIG2	-/.	+/.	chr1:216352104	chr2:118089592	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000042781.14	ENSG00000125629.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001977.1	CYP2A6	+/.	-/.	chr11:121765669	chr19:40848941	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000255974.8	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01720	LINC01720	+/.	+/.	chr1:190706674	chr1:190706732	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000231175.1	ENSG00000231175.1	.	.	upstream	downstream	duplicates(6),low_entropy(7)	.	.	.
NAT1	SYT1	+/.	+/.	chr8:18179768	chr12:79198619	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000171428.15	ENSG00000067715.14	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
LINC02554	AL050402.1(52844),AL133456.1(50935)	+/.	./.	chr22:27316602	chr22:27512904	intron	intergenic	duplication	0	0	0	13	1	low	.	.	.	.	.	ENSG00000226741.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SOX6	C11orf58	-/.	+/.	chr11:16721498	chr11:16721513	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000110693.18	ENSG00000110696.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
MTCO1P6(396998),U3(43189)	MTCO1P6(397013),U3(43174)	./.	./.	chr3:89987095	chr3:89987110	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC097521.1(19713),ADAM20P3(14052)	FP236383.3	./.	+/.	chr4:187732042	chr21:8392570	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51926),RBMY2WP(38066)	./.	./.	chrY:22724736	chrY:22724785	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(14),merge_adjacent	.	.	.
BPIFB4	H2BW2(4874),H2BW3P(15214)	+/.	./.	chr20:33094809	chrX:104047328	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000186191.8	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092681.1	AC092681.1	-/.	-/.	chr7:149907473	chr7:149907508	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000224016.2	ENSG00000224016.2	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
NUP98	SMAGP	-/.	-/.	chr11:3702357	chr12:51248435	intron	intron	translocation	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000170545.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC106901.1(79733),AC016903.1(10551)	ADAMTS9-AS2	./.	+/.	chr2:204459525	chr3:64736203	intergenic	intron	translocation	0	0	0	60	974	low	.	.	.	.	.	.	ENSG00000241684.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02530	NUP98	-/.	-/.	chr6:12583996	chr11:3702368	intron	intron	translocation/3'-3'	0	0	0	0	437	low	.	.	.	.	.	ENSG00000234015.1	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DGKI	FP236383.3	-/.	+/.	chr7:137711022	chr21:8392570	intron	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000157680.16	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702308	chr11:3702364	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SYDE2(865),C1orf52(48072)	AC027369.2(239),TRIM51GP(13275)	./.	./.	chr1:85201881	chr11:48962049	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DHFR	DLEU7	-/.	-/.	chr5:80651215	chr13:50533058	intron	intron	translocation	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000186047.11	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
TPT1P14(48516),RPL35AP37(90458)	CSAG3	./.	+/.	chrX:15026979	chrX:152758866	intergenic	intron	duplication	0	0	0	121	16	low	.	.	.	.	.	.	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
LINC00486	MSH2	+/.	+/.	chr2:32916556	chr2:47491554	intron	intron	deletion	0	0	0	1606	6	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000095002.15	.	.	downstream	upstream	mismatches	.	.	.
KMT2C	CPXM1	-/.	-/.	chr7:152435462	chr20:2799607	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000055609.20	ENSG00000088882.8	.	.	upstream	upstream	mismatches(1)	.	.	.
ACTG1P23(47423),EI24P1(42049)	ACTG1P23(47477),EI24P1(41995)	./.	./.	chr3:176025993	chr3:176026047	intergenic	intergenic	duplication/ITD	0	0	0	56	56	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916547	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
TFPI(79911),LINC01090(67145)	.	./.	./.	chr2:187645671	KI270728.1:1156693	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131103	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10900),AP000345.1(8367)	./.	./.	chr22:23558642	chr22:23558697	intergenic	intergenic	duplication/ITD	0	0	0	140	140	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),low_entropy(3)	.	.	.
ST13P7(72603),EXOC4(9956)	ST13P7(72614),EXOC4(9945)	./.	./.	chr7:133243117	chr7:133243128	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702348	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
LINC01685	FGFR2	+/.	-/.	chr1:38476617	chr10:121572779	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000238063.3	ENSG00000066468.23	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785775	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132188996	chr7:132189010	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CFAP20DC	MYO18A	-/.	-/.	chr3:59049800	chr17:29085035	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689.20	ENSG00000196535.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565305	chr15:81565314	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
BMS1P21(4209),MBL1P(8113)	BMS1P21(4218),MBL1P(8104)	./.	./.	chr10:79912065	chr10:79912074	intergenic	intergenic	duplication/ITD	0	0	0	95	94	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CCDC26	Z96074.1	-/.	+/.	chr8:128953550	chrX:137806576	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229140.11	ENSG00000283692.2	.	.	upstream	downstream	mismatches(1)	.	.	.
ADORA2B	AL136114.1	+/+	-/-	chr17:15944999	chr1:177705126	5'UTR	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000170425.3	ENSG00000227579.6	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8402279	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77469),PCSK5(88600)	./.	./.	chr7:39505425	chr9:75802044	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC009227.2(116358),RNA5SP107(13229)	AC009227.2(116367),RNA5SP107(13220)	./.	./.	chr2:154577178	chr2:154577187	intergenic	intergenic	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	chr4:184122405	chr15:45462588	intron	intron	translocation/5'-5'	0	0	0	16	4	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL355674.1(96166),RORB-AS1(4807)	AL355674.1(96175),RORB-AS1(4798)	./.	./.	chr9:74480744	chr9:74480753	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262498	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83134546	chr16:83134597	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC02554	LINC02554	+/.	+/.	chr22:27316605	chr22:27316616	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000226741.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP2B1	AP2B1	+/.	+/.	chr17:35583515	chr17:35583559	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000006125.18	ENSG00000006125.18	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521068	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KCNIP1	AC105180.2(10848),ZFAT(76453)	+/.	./.	chr5:170556676	chr8:134401335	intron	intergenic	translocation	0	0	0	0	120	low	.	.	.	.	.	ENSG00000182132.14	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	chr1:201702678	chr1:201702687	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000231871.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01144	ERBB3	+/+	+/+	chr1:45304502	chr12:56097170	exon	CDS	translocation	0	0	0	2	0	low	.	.	|Protein_kinase_domain(63%)	.	.	ENSG00000281912.1	ENSG00000065361.16	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FBXW9	+/.	-/.	chr2:32916556	chr19:12696154	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000132004.13	.	.	downstream	upstream	mismatches	.	.	.
AC025580.2	AC025580.2	+/.	+/.	chr15:45462493	chr15:45462591	intron	intron	duplication/ITD	0	0	0	0	4	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000259354.5	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092433	intron	intron	duplication	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392887	chr11:88092441	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	duplicates	.	.	.
TTLL7(35),AC104454.1(16680)	FP236383.3	./.	+/.	chr1:83999185	chr21:8397820	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092352	chr11:88092445	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683456	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ENPP6	AC025580.2	-/.	+/.	chr4:184122405	chr15:45462231	intron	intron	translocation/5'-5'	0	0	0	16	4	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CFTR	AC020611.2	+/.	-/.	chr7:117448925	chr12:64071158	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000001626.16	ENSG00000255886.1	.	.	upstream	downstream	mismatches(1)	.	.	.
FAM214B	OPHN1	-/.	-/.	chr9:35110205	chrX:67962334	5'UTR	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000005238.20	ENSG00000079482.14	.	.	downstream	downstream	mismatches(1)	.	.	.
AC124861.2(17620),AC124861.1(15532)	AC025470.2	./.	+/.	chr2:240212028	chr5:57533339	intergenic	exon	translocation	0	0	0	7	6	low	.	.	.	.	.	.	ENSG00000250961.2	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARMC1	AL157388.1	-/-	-/-	chr8:65627213	chr10:118798811	intron	intron	translocation	0	0	0	1	0	low	.	.	Armadillo/beta-catenin-like_repeat(85%)|	.	.	ENSG00000104442.10	ENSG00000229272.2	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02552	.	-/.	./.	chr11:104549832	GL000220.1:114293	intron	intergenic	translocation	0	0	0	16	.	low	.	.	.	.	.	ENSG00000256422.6	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
PRKCE	LINC02882	+/.	-/.	chr2:45781655	chr12:73881443	intron	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000171132.14	ENSG00000251138.7	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916568	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SLC4A7	TMEM184C	-/.	+/.	chr3:27484029	chr4:147649187	intron	intron	translocation	0	0	0	6	1	low	.	.	.	.	.	ENSG00000033867.16	ENSG00000164168.8	.	.	downstream	downstream	mismatches(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491195	chr11:105491204	intron	intron	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(15),low_entropy(2)	.	.	.
ARHGEF18	ARHGEF18	+/.	+/.	chr19:7385825	chr19:7385836	intron	intron	duplication/ITD	0	0	0	20	0	low	.	.	.	.	.	ENSG00000104880.19	ENSG00000104880.19	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
FHIT	COP1P1(12204),RN7SL50P(45323)	-/.	./.	chr3:60288257	chr18:8426508	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000189283.10	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565294	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
CSNK1A1L(19458),AL356274.1(14054)	SMAD3	./.	+/.	chr13:37125122	chr15:67126775	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000166949.17	.	.	downstream	upstream	duplicates(2),mismatches(3)	.	.	.
PPP3CC	.	+/.	./.	chr8:22486063	GL000220.1:136153	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000120910.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ASAP1	DMD	-/.	-/.	chr8:130071023	chrX:31138625	intron	intron	translocation	0	0	0	8	95	low	.	.	.	.	.	ENSG00000153317.15	ENSG00000198947.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AL049775.2	AL162151.3(74440),AL162151.1(80431)	-/.	./.	chr14:85404901	chr14:99077985	intron	intergenic	deletion	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258902.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC109479.1	.	-/-	./-	chr5:179377620	GL000224.1:56057	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000253163.1	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	AC244131.2(12406),PRB3(2129)	./.	./.	chr3:31295858	chr12:11263795	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092910.3	AC008083.2(60394),PPIAP45(2199)	+/.	./.	chr3:120125712	chr12:47339415	intron	intergenic	translocation	0	0	0	306	89	low	.	.	.	.	.	ENSG00000242622.2	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661294	chr4:152661348	intron	intron	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	same_gene	.	.	.
TPTE2P1(13480),RPL34P27(6610)	FP671120.4	./.	+/.	chr13:24981967	chr21:8214792	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC084759.3	AC093627.22	+/+	-/+	chr15:53910829	chr7:117610	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280362.1	ENSG00000287883.1	.	.	downstream	upstream	mismatches(2)	.	.	.
TNR	TNR	-/.	-/.	chr1:175517008	chr1:175517070	intron	intron	duplication/ITD	0	0	0	27	27	low	.	.	.	.	.	ENSG00000116147.17	ENSG00000116147.17	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
ZNF780A	FP236383.3	-/.	+/.	chr19:40090468	chr21:8442056	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000197782.14	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	C12orf45	+/.	+/.	chr3:64736203	chr12:105046192	intron	intron	translocation	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000151131.11	.	.	upstream	downstream	duplicates(21),mismatches(2)	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446345	chr12:50446354	intron	intron	duplication/ITD	0	0	0	86	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
FMR1-AS1	.	-/.	./.	chrX:147911827	GL000220.1:160360	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000268066.5	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	chr1:201702678	chr1:201702687	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000231871.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683468	chr15:81683477	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269664	chr14:77269725	intron	intron	duplication/ITD	0	0	0	11	20	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
IPO9-AS1	NAV1	-/.	+/.	chr1:201702678	chr1:201702687	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000134369.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
ENPP6	ENPP6	-/.	-/.	chr4:184122405	chr4:184122419	intron	intron	duplication/ITD	0	0	0	16	0	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000164303.11	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117372	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
ENPP6	AC025580.2	-/.	+/.	chr4:184122405	chr15:45462159	intron	intron	translocation/5'-5'	0	0	0	16	4	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046193	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(32),low_entropy(1),merge_adjacent	.	.	.
LINC01791	LINC01791	+/.	+/.	chr19:31183179	chr19:31183242	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000267777.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC073529.1	AC073529.1	-/.	-/.	chrX:11077754	chrX:11077823	intron	intron	duplication/ITD	0	0	0	24	28	low	.	.	.	.	.	ENSG00000234129.8	ENSG00000234129.8	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176088	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
PLCL1	SAPCD2P1(11260),ZNF735(12937)	+/.	./.	chr2:198277711	chr7:64194153	intron	intergenic	translocation	0	0	0	259	78	low	.	.	.	.	.	ENSG00000115896.16	.	.	.	downstream	upstream	low_entropy	.	.	.
GABPB2	AC002066.1	+/.	-/.	chr1:151087306	chr7:116255782	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143458.12	ENSG00000237813.4	.	.	downstream	upstream	mismatches(1)	.	.	.
RAB11FIP5(18991),NOTO(26862)	ZMYM3	./.	-/.	chr2:73175712	chrX:71254014	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000147130.14	.	.	upstream	downstream	mismatches(1)	.	.	.
U6(246391),HSP90AB2P(35612)	INTS5(552),C11orf98(8963),LBHD1(8963)	./.	./.	chr4:13297802	chr11:62653854	intergenic	intergenic	translocation	0	0	0	672	105	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397920	intron	intron	translocation	0	0	0	1606	64	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
BBX	LINC02882	+/.	-/.	chr3:107523397	chr12:73881443	intron	intron	translocation/3'-3'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000114439.19	ENSG00000251138.7	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396370	chr10:104479907	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158219	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
NUP54	ZNF462	-/.	+/.	chr4:76125685	chr9:106864118	intron	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	ENSG00000138750.15	ENSG00000148143.13	.	.	downstream	downstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661565	chrX:133661576	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NUP98	XRCC6P2(77100),MAMLD1(51426)	-/.	./.	chr11:3702364	chrX:150309996	intron	intergenic	translocation	0	0	0	437	3	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396388	chr10:104396397	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131205	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
MIR4300HG	ALDH1L2	-/.	-/.	chr11:82143174	chr12:105046182	intron	intron	translocation/3'-3'	0	0	0	719	1664	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000136010.14	.	.	downstream	downstream	mismatches(1)	.	.	.
NIPAL2(31981),STK3(44854)	COP1P1(12205),RN7SL50P(45322)	./.	./.	chr8:98326374	chr18:8426509	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4404),AP001994.1(77277)	AP003390.1(4503),AP001994.1(77178)	./.	./.	chr11:119744027	chr11:119744126	intergenic	intergenic	duplication/ITD	0	0	0	1470	1348	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BAIAP2L1(188),PPIAP82(52841)	FP236383.3	./.	+/.	chr7:98401278	chr21:8442056	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138620	chrX:31138687	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC233701.1(7210),MIR4739(96045)	AC233701.1(7225),MIR4739(96030)	./.	./.	chr17:79611131	chr17:79611146	intergenic	intergenic	duplication/ITD	0	0	0	91	91	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(74),low_entropy(14)	.	.	.
ACTG1P23(47423),EI24P1(42049)	ACTG1P23(47491),EI24P1(41981)	./.	./.	chr3:176025993	chr3:176026061	intergenic	intergenic	duplication/ITD	0	0	0	56	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956911	chr17:75956926	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DNAH14	CDH12	+/.	-/.	chr1:225078860	chr5:22529191	intron	intron	translocation	0	0	0	23	3	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000154162.15	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117443	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EML1	EML1	+/.	+/.	chr14:99796193	chr14:99796202	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(8)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824766	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(4),low_entropy(3),merge_adjacent	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021197	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(81)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683470	chr15:81683479	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
UBE2W	FP236383.3	-/.	+/.	chr8:73820102	chr21:8442046	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000280441.3	.	.	upstream	upstream	duplicates(4),homopolymer(3)	.	.	.
LINC01829	ITGAE	-/.	-/.	chr2:67293346	chr17:3736974	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236780.7	ENSG00000083457.12	.	.	upstream	downstream	mismatches(1)	.	.	.
C5orf51	YPEL1(272),AP000553.8(1382)	+/+	./-	chr5:41919218	chr22:21736066	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	Family_of_unknown_function_(DUF5561)(100%)|	.	.	ENSG00000205765.9	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC245297.1	OTX2P1(77473),PCSK5(88596)	-/.	./.	chr1:149319443	chr9:75802048	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000215861.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LIPA	IFIT2	-/.	+/.	chr10:89293680	chr10:89293715	intron	intron	duplication/5'-5'	0	0	0	5	5	low	.	.	.	.	.	ENSG00000107798.18	ENSG00000119922.11	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
CSK	SLC7A10	+/+	-/-	chr15:74802960	chr19:33217934	3'UTR	intron	translocation	0	0	0	0	2	low	.	.	Protein_kinase_domain(100%),SH2_domain(100%),SH3_domain(100%)|Amino_acid_permease(97%)	.	.	ENSG00000103653.16	ENSG00000130876.11	.	.	downstream	downstream	mismatches(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	PRB3(35142),PRB4(2130)	./.	./.	chr3:31295858	chr12:11304947	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392889	chr10:104479908	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
CADM2	AP001823.1(3427),ELMOD1(761)	+/.	./.	chr3:85354619	chr11:107590330	intron	intergenic	translocation	0	0	0	0	683	low	.	.	.	.	.	ENSG00000175161.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL512634.1(10298),CHCHD2P9(182692)	SHD(633),TMIGD2(877)	./.	./.	chr9:79208612	chr19:4291355	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626674	chrX:18626683	intron	intron	duplication/ITD	0	0	0	84	83	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CFAP58	FRY	+/.	+/.	chr10:104396370	chr13:31867341	intron	intron	translocation	0	0	0	217	2	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000073910.23	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785692	chr2:101785791	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AP001823.1(3425),ELMOD1(763)	ALDH1L2	./.	-/.	chr11:107590328	chr12:105046178	intergenic	intron	translocation	0	0	0	683	1664	low	.	.	.	.	.	.	ENSG00000136010.14	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00316(21890),MTCO1P3(12311)	.	./.	./.	chr21:45363880	GL000220.1:114252	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565355	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
UNC5A	UNC5A	+/.	+/.	chr5:176834661	chr5:176834727	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000113763.12	ENSG00000113763.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PRIMA1	FP236383.3	-/.	+/.	chr14:93720763	chr21:8397833	3'UTR	intron	translocation/3'-3'	0	0	0	0	450	low	.	.	.	.	.	ENSG00000175785.13	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00575	LINC00575	-/.	-/.	chr4:82619857	chr4:82619897	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000231782.7	ENSG00000231782.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
PLEKHG1	PLEKHG1	+/.	+/.	chr6:150674633	chr6:150674644	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000120278.16	ENSG00000120278.16	.	.	upstream	downstream	duplicates(12),low_entropy(7)	.	.	.
SYT2	TYRO3(16366),AC016134.1(9502)	-/.	./.	chr1:202691739	chr15:41599955	intron	intergenic	translocation	0	0	0	13	186	low	.	.	.	.	.	ENSG00000143858.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	TCF7L2	+/.	+/.	chr10:104396370	chr10:113117416	intron	intron	inversion/3'-3'	0	0	0	217	254	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702354	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117375	chr10:113117384	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479896	intergenic	intron	translocation	0	0	0	171	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683460	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TRAK1	TMEM132B	+/.	+/.	chr3:42201854	chr12:125495237	intron	intron	translocation/3'-3'	0	0	0	1	7	low	.	.	.	.	.	ENSG00000182606.17	ENSG00000139364.10	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565348	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396377	chr10:104396386	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
CBLB	PPEF1	-/.	+/.	chr3:105786074	chrX:18799788	intron	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	ENSG00000114423.23	ENSG00000086717.18	.	.	downstream	downstream	mismatches(1)	.	.	.
SGMS1	.	-/.	./.	chr10:50624032	KI270733.1:176187	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000198964.14	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626670	chrX:18626679	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(4),low_entropy(2),merge_adjacent	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380604	chr20:36380613	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
IGF2	.	-/.	./.	chr11:2138068	KI270733.1:176067	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000167244.21	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
COMETT	AC060809.1	-/.	+/.	chr7:116638129	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259543.1	.	.	downstream	upstream	low_entropy	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683525	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479812	chr10:104479907	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PDE4DIP	SLC39A14	+/.	+/.	chr1:148810794	chr8:22396551	intron	intron	translocation/3'-3'	0	0	0	14	308	low	.	.	.	.	.	ENSG00000178104.19	ENSG00000104635.15	.	.	upstream	upstream	mismatches(1)	.	.	.
L29074.2	FP671120.4	+/+	+/+	chrX:147911828	chr21:8216918	exon	intron	translocation	0	0	0	0	603	low	.	.	.	.	.	ENSG00000274086.1	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU1-154P(719),AC239860.2(27386)	RNU1-154P(728),AC239860.2(27377)	./.	./.	chr1:145432412	chr1:145432421	intergenic	intergenic	duplication/ITD	0	0	0	188	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01198(14967),LRCH1(22243)	AC023034.1	./.	+/.	chr13:46530925	chr15:81565292	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736205	chr3:64736268	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702362	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902250	chr4:94902261	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125733	chr11:3702314	intron	intron	translocation	0	0	0	305	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392796	chr1:90392811	intron	intron	duplication/ITD	0	0	0	326	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
RNU6-521P(183179),AC007274.3(50631)	RNU6-521P(183190),AC007274.3(50620)	./.	./.	chrY:7606337	chrY:7606348	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),merge_adjacent	.	.	.
NAV2-AS4	NR4A1	-/.	+/.	chr11:19511706	chr12:52055850	exon	exon	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000254622.1	ENSG00000123358.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AF064860.1	B3GALT5-AS1	+/.	-/.	chr21:39679805	chr21:39679875	intron	intergenic	duplication/3'-3'	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000184809.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262496	chr6:42262505	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
FAM217B(5306),CDH26(4437)	FAM217B(5315),CDH26(4428)	./.	./.	chr20:59953986	chr20:59953995	intergenic	intergenic	duplication/ITD	0	0	0	9	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	chr6:93664689	chr6:93664786	intron	intron	duplication/ITD	0	0	0	6	8	low	.	.	.	.	.	ENSG00000287683.1	ENSG00000287683.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TRERF1	LMNTD1(20091),RN7SKP262(110617)	-/.	./.	chr6:42262568	chr12:25668670	intron	intergenic	translocation	0	0	0	3473	10	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP98	DAAM1(45879),GPR135(11738)	-/.	./.	chr11:3702361	chr14:59417284	intron	intergenic	translocation	0	0	0	437	20	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	AC092910.3	./.	+/.	chr3:35036274	chr3:120125719	intergenic	intron	deletion	0	0	0	237	306	low	.	.	.	.	.	.	ENSG00000242622.2	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LY6E(14625),C8orf31(752)	LINC02620	./.	-/.	chr8:143038457	chr10:104479904	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
H3C13(12139),H4C14(6827)	VPS54(36311),AC012368.2(30614)	./.	./.	chr1:149825832	chr2:64055739	intergenic	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01426	LINC01426	+/.	+/.	chr21:34753399	chr21:34753412	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000234380.2	ENSG00000234380.2	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
PPP1R3D	H4C9(3212),H2BC12(3268)	-/-	./-	chr20:59936654	chr6:27143093	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	Carbohydrate/starch-binding_module_(family_21)(100%)|	.	.	ENSG00000132825.7	.	.	.	upstream	downstream	mismatches(1)	.	.	.
INPP5D	GTF2IRD1	+/.	+/.	chr2:233117636	chr7:74546721	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000006704.11	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
TAOK1	AL353615.1(19403),SOCS5P2(73759)	+/+	./+	chr17:29390581	chr9:135373687	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160551.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SAP130	SAP130	-/.	-/.	chr2:127958636	chr2:127958651	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000136715.19	ENSG00000136715.19	.	.	upstream	downstream	duplicates(11),low_entropy(7)	.	.	.
CCDC187(138),DKFZP434A062(15264)	IQCH-AS1	./.	-/.	chr9:136307039	chr15:67307531	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259673.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125706	chr3:120125748	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	AC087863.2(72173),SRRM4(438)	+/.	./.	chr2:32916556	chr12:118981103	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AC019131.1	.	+/.	./.	chr4:98936686	KI270733.1:131362	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263923.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
UBE2W	AL355309.1(99987),RAC1P4(16222)	-/.	./.	chr8:73820102	chrX:137425036	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691753	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SHISA5(10328),PFKFB4(2530)	AC084364.3	./.	-/.	chr3:48515154	chr12:103552528	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000286197.1	.	.	upstream	upstream	mismatches(1)	.	.	.
DGKI	CR392039.1(647),CR392039.3(8419)	-/.	./.	chr7:137711022	chr21:8988077	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000157680.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMCO3(3183),TFDP1(26948)	TMCO3(3192),TFDP1(26939)	./.	./.	chr13:113557773	chr13:113557782	intergenic	intergenic	duplication/ITD	0	0	0	13	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC091078.1	AC091078.1	+/.	+/.	chr15:93467715	chr15:93467770	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000257060.7	ENSG00000257060.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
IL15(110186),INPP4B(178987)	FP671120.4	./.	+/.	chr4:141844173	chr21:8214782	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
IGH-@-ext	AL078622.1(96550),Z82202.2(17322)	+/+	./-	chr14:105867114	chr22:49149099	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	IGH-.g@-ext	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683523	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
PAPPA	AP000821.1	+/.	-/.	chr9:116337689	chr11:126101057	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182752.10	ENSG00000261257.1	.	.	upstream	downstream	mismatches(1)	.	.	.
SMURF2	SMURF2	-/.	-/.	chr17:64631274	chr17:64631341	intron	intron	duplication/ITD	0	0	0	31	21	low	.	.	.	.	.	ENSG00000108854.16	ENSG00000108854.16	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
LY6E(14625),C8orf31(752)	AP005436.1	./.	-/.	chr8:143038457	chr11:88092439	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
NRIP3	AC091806.1	-/-	+/-	chr11:9003966	chrX:40289160	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	ENSG00000236393.2	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC105180.2(10848),ZFAT(76453)	RCVRN	./.	-/.	chr8:134401335	chr17:9898479	intergenic	intron	translocation	0	0	0	120	0	low	.	.	.	.	.	.	ENSG00000109047.8	.	.	downstream	upstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046196	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(19),low_entropy(1),merge_adjacent	.	.	.
KDM6B	.	+/.	./.	chr17:7852758	KI270733.1:176199	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132510.11	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC105180.2(10848),ZFAT(76453)	MTCYBP27(50815),RNU6-976P(512039)	./.	./.	chr8:134401335	chr14:84227903	intergenic	intergenic	translocation	0	0	0	120	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298001	chr7:32298014	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520835	chr7:30520920	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
TSHZ3	TSHZ3	-/.	-/.	chr19:31183179	chr19:31183247	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000121297.8	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679816	chr21:39679825	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683468	chr15:81683477	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785669	chr2:101785759	intron	intron	duplication/ITD	0	0	0	703	765	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	duplicates(1),low_entropy(12)	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640183	chr2:198640192	intron	intron	duplication/ITD	0	0	0	66	65	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ADAMTS9-AS2	BMPR1B	+/.	+/.	chr3:64736203	chr4:94902254	intron	intron	translocation/3'-3'	0	0	0	974	1847	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000138696.11	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
ADAMTS9-AS2	ALDH1L2	+/.	-/.	chr3:64736203	chr12:105046184	intron	intron	translocation/3'-3'	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000136010.14	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
RNF220	AC116611.1	+/.	-/.	chr1:44417643	chr4:32711206	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187147.18	ENSG00000286784.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC016766.1	CYP3A7	-/.	-/.	chr2:164102755	chr7:99706823	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000237844.2	ENSG00000160870.15	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674836	chr5:20674845	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(9)	.	.	.
INTS6P1(97293),GCSHP1(69770)	MCMBP	./.	-/.	chr5:39818806	chr10:119872709	intergenic	5'UTR	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000197771.13	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GBP1P1	AL132996.1	+/.	+/.	chr1:89408666	chr6:90342640	intron	intron	translocation/3'-3'	0	0	0	7	1	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000260271.3	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SKP48(34876),AC097488.1(110458)	.	./.	./.	chr4:85135699	KI270733.1:178391	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31187727	chrX:31187736	intron	intron	duplication/ITD	0	0	0	73	69	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC008945.1	NCAPG2	+/+	-/+	chr5:42806428	chr7:158632013	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272234.1	ENSG00000146918.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AC010746.2(61294),NPM1P46(5667)	AC010746.2(61390),NPM1P46(5571)	./.	./.	chr2:197374034	chr2:197374130	intergenic	intergenic	duplication/ITD	0	0	0	3	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TIMP3	SYN3	+/.	-/.	chr22:32814147	chr22:32814156	intron	intron	duplication/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000100234.12	ENSG00000185666.15	.	.	upstream	downstream	duplicates(1)	.	.	.
NXPH3	.	+/.	./.	chr17:49576096	KI270733.1:145955	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000182575.8	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC084759.3	AL929288.2(18712),RPS3AP9(3849)	+/+	./+	chr15:53910830	chr1:188690471	exon	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280362.1	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GNGT1	GNGT1	+/.	+/.	chr7:93597399	chr7:93597408	intron	intron	duplication/ITD	0	0	0	15	12	low	.	.	.	.	.	ENSG00000127928.13	ENSG00000127928.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CMAHP	AC009630.3	-/.	-/.	chr6:25226640	chr8:41616186	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	ENSG00000264578.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC090541.1	FUNDC2P4(9877),PDGFB(57537)	+/.	./.	chr8:19681397	chr22:39165822	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000253270.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916406	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765685	chr11:121765760	intron	intron	duplication/ITD	0	0	0	23	20	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AC008083.2(60394),PPIAP45(2199)	AC008083.2(60407),PPIAP45(2186)	./.	./.	chr12:47339415	chr12:47339428	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(83),low_entropy(6)	.	.	.
LINC02458	LINC02458	-/.	-/.	chr12:89164802	chr12:89164817	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000246363.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193827	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
SPANXD(94026),MAGEC3(45551)	SPANXD(94035),MAGEC3(45542)	./.	./.	chrX:141792765	chrX:141792774	intergenic	intergenic	duplication/ITD	0	0	0	62	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ATXN7	PCSK6	+/.	-/.	chr3:63900074	chr15:101358825	intron	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	ENSG00000140479.18	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916410	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SLFN13	+/.	-/.	chr2:32916551	chr17:35448412	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000154760.14	.	.	downstream	downstream	mismatches	.	.	.
UNCX	KDM4B	+/+	+/+	chr7:1236840	chr19:5090395	CDS	intron	translocation	0	0	0	0	19	low	.	.	Homeodomain(100%)|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000164853.9	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158225	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LRRC36	LRRC36	+/.	+/.	chr16:67331064	chr16:67331077	intron	intron	duplication/ITD	0	0	0	25	0	low	.	.	.	.	.	ENSG00000159708.18	ENSG00000159708.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117419	chr10:113117449	intron	intron	duplication/ITD	0	0	0	254	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
EML1	EML1	+/.	+/.	chr14:99796188	chr14:99796201	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(31),low_entropy(1),merge_adjacent	.	.	.
MARK1	.	+/.	./.	chr1:220591888	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000116141.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00402(27369),AL353660.1(725)	LINC00402(27419),AL353660.1(675)	./.	./.	chr13:74287345	chr13:74287395	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262480	chr6:42262489	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046190	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(10)	.	.	.
RMDN2	MMP2	+/.	+/.	chr2:38020787	chr16:55433378	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115841.21	ENSG00000087245.13	.	.	upstream	downstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	FP236383.3	./.	+/.	chr2:218108703	chr21:8442064	intergenic	intron	translocation	0	0	0	125	35	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(9),homopolymer(2)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257429	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC025580.2	MACROD2	+/.	+/.	chr15:45462157	chr20:15209116	intron	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000172264.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC025465.1	AL022726.1(101767),AL008627.1(46474)	-/.	./.	chr5:124505742	chr6:19995981	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000248296.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009803.1	TYRO3(16366),AC016134.1(9502)	-/.	./.	chr12:115594134	chr15:41599955	intron	intergenic	translocation	0	0	0	0	186	low	.	.	.	.	.	ENSG00000257407.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	DAZAP2	-/.	+/.	chr11:3702359	chr12:51248435	intron	intron	translocation/3'-3'	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000183283.16	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HSBP1(1022),MLYCD(78356)	HSBP1(1062),MLYCD(78316)	./.	./.	chr16:83820759	chr16:83820799	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5445),ZNF669(8450)	./.	./.	chr1:247091449	chr1:247091512	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CANT1	FP236383.3	-/-	+/+	chr17:78995148	chr21:8442045	CDS	intron	translocation	0	0	0	8	2539	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
MEGF11	MEGF11	-/.	-/.	chr15:66150824	chr15:66150860	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000157890.17	ENSG00000157890.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAD1L1	.	-/.	./.	chr7:1966818	KI270733.1:145955	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000002822.16	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PPP2CA	.	-/.	./.	chr5:134225650	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000113575.10	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521073	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280000	chr1:148280095	intron	intron	duplication/ITD	0	0	0	40	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FP671120.4	ARHGAP6	+/.	-/.	chr21:8216924	chrX:11159509	intron	intron	translocation/3'-3'	0	0	0	74	7	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000047648.23	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143110	chr11:82143119	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
INTS5(469),C11orf98(9046),LBHD1(9046)	INTS5(553),C11orf98(8962),LBHD1(8962)	./.	./.	chr11:62653771	chr11:62653855	intergenic	intergenic	duplication/ITD	0	0	0	105	105	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785676	chr2:101785775	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262494	chr6:42262503	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC01163	AL050402.1(52850),AL133456.1(50929)	+/.	./.	chr10:128239620	chr22:27512910	intron	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000280953.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138632	chrX:31138641	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(9),low_entropy(4)	.	.	.
FAM207BP(9507),GXYLT1P1(17401)	FAM207BP(9548),GXYLT1P1(17360)	./.	./.	chr13:18707014	chr13:18707055	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
SETP8(400644),AC005002.1(33618)	SETP8(400657),AC005002.1(33605)	./.	./.	chrX:117364320	chrX:117364333	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MTHFD1L	MTHFD1L	+/.	+/.	chr6:151069242	chr6:151069281	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000120254.16	ENSG00000120254.16	.	.	upstream	downstream	duplicates(11),low_entropy(7)	.	.	.
RGS12	RALGDS	+/+	-/+	chr4:3386016	chr9:133148046	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	ENSG00000160271.16	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF780A	.	-/.	./.	chr19:40090468	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197782.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308656	chr3:19308665	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683468	chr15:81683477	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SPANXN4(33384),RN7SKP81(22261)	SPANXN4(33453),RN7SKP81(22192)	./.	./.	chrX:143068086	chrX:143068155	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(40),low_entropy(14)	.	.	.
FIBIN(9775),BBOX1(33863)	LSM14B	./.	+/.	chr11:27006862	chr20:62131771	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR4300HG	AC016694.1(51914),RBMY2WP(38078)	-/.	./.	chr11:82143174	chrY:22724773	intron	intergenic	translocation	0	0	0	719	1708	low	.	.	.	.	.	ENSG00000245832.7	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008014.1	.	+/.	./.	chr12:46670813	GL000220.1:160359	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257261.6	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765719	chr11:121765759	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046194	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(280),low_entropy(20)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916507	chr21:8397818	intron	intron	translocation	0	0	0	1644	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC01483	LINC01483	+/.	+/.	chr17:69831023	chr17:69831038	intron	intron	duplication/ITD	0	0	0	9	8	low	.	.	.	.	.	ENSG00000227517.7	ENSG00000227517.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396375	chr10:104396384	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DAAM1(45879),GPR135(11738)	DAAM1(45894),GPR135(11723)	./.	./.	chr14:59417284	chr14:59417299	intergenic	intergenic	duplication/ITD	0	0	0	20	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(13),low_entropy(2)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114248	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
MIR30D(27149),AC083843.1(653)	FGFR2	./.	-/.	chr8:134832094	chr10:121572779	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000066468.23	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8403225	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
CSTP1	.	-/.	./.	chr20:23922329	KI270733.1:176084	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000228476.2	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
RNU6-521P(183176),AC007274.3(50634)	RNU6-521P(183191),AC007274.3(50619)	./.	./.	chrY:7606334	chrY:7606349	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(327),low_entropy(24)	.	.	.
UTRN	COPZ1	+/.	+/.	chr6:144648111	chr12:54304542	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000111481.10	.	.	upstream	upstream	mismatches(1)	.	.	.
IL15(110187),INPP4B(178986)	AL355309.1(99987),RAC1P4(16222)	./.	./.	chr4:141844174	chrX:137425036	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	chr4:184122405	chr15:45463201	intron	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC016026.1	.	-/.	./.	chr22:17796203	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000093100.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491187	chr11:105491196	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(6)	.	.	.
AGTR1(33651),CPB1(14443)	AGTR1(33708),CPB1(14386)	./.	./.	chr3:148776659	chr3:148776716	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01138	TCF7L2	-/.	+/.	chr1:148328317	chr10:113117374	intron	intron	translocation	0	0	0	0	266	low	.	.	.	.	.	ENSG00000274020.4	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AC090541.1	SCAI	+/.	-/.	chr8:19681397	chr9:124984492	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000253270.1	ENSG00000173611.18	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	DDX31	+/.	-/.	chr2:32916556	chr9:132643581	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000125485.17	.	.	downstream	downstream	mismatches	.	.	.
MANBA	SIK1(16903),LINC00319(2567)	-/.	./.	chr4:102684493	chr21:43444034	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109323.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DAZAP2	SMAGP	+/.	-/.	chr12:51248435	chr12:51248448	intron	intron	duplication/3'-3'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000183283.16	ENSG00000170545.17	.	.	upstream	downstream	duplicates(13),low_entropy(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214890	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
INPP5D	CASP7	+/.	+/.	chr2:233117636	chr10:113679492	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000165806.21	.	.	downstream	upstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046194	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(379),low_entropy(25)	.	.	.
ADAMTS9-AS2	C12orf45	+/.	+/.	chr3:64736203	chr12:105046184	intron	intron	translocation	0	0	0	974	1664	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000151131.11	.	.	upstream	downstream	duplicates(22),mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114352	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702329	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(45),low_entropy(2),merge_adjacent	.	.	.
LINC01720	LINC01720	+/.	+/.	chr1:190706674	chr1:190706738	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000231175.1	ENSG00000231175.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
CD47	CD47	-/.	-/.	chr3:108049094	chr3:108049109	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000196776.17	ENSG00000196776.17	.	.	upstream	downstream	duplicates(18),low_entropy(4)	.	.	.
AP002989.1	AP002989.1	-/.	-/.	chr11:103879999	chr11:103880014	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000254987.1	ENSG00000254987.1	.	.	upstream	downstream	duplicates(8),low_entropy(7)	.	.	.
LINC00316(21890),MTCO1P3(12311)	.	./.	./.	chr21:45363880	KI270733.1:131108	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AL591519.1	AL591519.1	+/.	+/.	chr6:93664689	chr6:93664784	intron	intron	duplication/ITD	0	0	0	6	8	low	.	.	.	.	.	ENSG00000287683.1	ENSG00000287683.1	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
CARD16	CARD16	-/.	-/.	chr11:105077814	chr11:105077883	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000204397.9	ENSG00000204397.9	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864056	chr9:106864065	intron	intron	duplication/ITD	0	0	0	87	86	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
AC104041.1	UBE2FP2(4909),AC138305.1(128284)	-/.	./.	chr15:81683524	chr16:63185980	intron	intergenic	translocation	0	0	0	149	35	low	.	.	.	.	.	ENSG00000259692.6	.	.	.	downstream	downstream	low_entropy	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419194	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618953	chr19:40880799	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
XPR1	XPR1	+/.	+/.	chr1:180714353	chr1:180714364	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000143324.14	ENSG00000143324.14	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785785	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132188994	chr7:132189009	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(59),low_entropy(20)	.	.	.
AC016735.1(19276),LINC01819(2487)	SLC6A14	./.	+/.	chr2:43025336	chrX:116445508	intergenic	intron	translocation	0	0	0	1	687	low	.	.	.	.	.	.	ENSG00000268104.3	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	.	./.	./.	chr4:136763598	KI270733.1:175795	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP003390.1(4503),AP001994.1(77178)	ALDH1L2	./.	-/.	chr11:119744126	chr12:105046182	intergenic	intron	translocation	0	0	0	1348	1664	low	.	.	.	.	.	.	ENSG00000136010.14	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479895	chr14:82214962	intron	intergenic	translocation	0	0	0	988	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114259	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446355	chr12:50446364	intron	intron	duplication/ITD	0	0	0	86	70	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16350),AC016134.1(9518)	./.	./.	chr15:41599884	chr15:41599939	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CSGALNACT1	FUNDC2P4(9877),PDGFB(57537)	-/.	./.	chr8:19681397	chr22:39165822	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000147408.14	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	BMPR1B	+/.	+/.	chr3:64736203	chr4:94902260	intron	intron	translocation/3'-3'	0	0	0	974	1847	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000138696.11	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
RHBDF1(353),MPG(299)	.	./.	./.	chr16:76708	KI270733.1:176193	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
AC023034.1	SMURF2	+/.	-/.	chr15:81565298	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
FP236383.3	AC016026.1	+/.	-/.	chr21:8442056	chr22:17796203	intron	intron	translocation	0	0	0	2539	0	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000093100.13	.	.	upstream	upstream	mismatches(1)	.	.	.
AC026765.3	.	+/.	./.	chr12:114698741	GL000220.1:114349	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257817.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GALNT10	FAM214B	+/.	-/.	chr5:154268430	chr9:35110205	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164574.16	ENSG00000005238.20	.	.	upstream	downstream	mismatches(1)	.	.	.
RABGAP1L-DT	MAP4K4	-/.	+/.	chr1:174121817	chr2:101785785	intron	intron	translocation	0	0	0	0	710	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000071054.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009754.2	AC009754.2	+/.	+/.	chr15:52679756	chr15:52679770	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000287500.1	ENSG00000287500.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SUB1(17599),LINC02061(24886)	MIR3668(50092),AL035446.2(320370)	./.	./.	chr5:32621678	chr6:140255418	intergenic	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	chr7:129531132	chr15:45462222	intergenic	intron	translocation	0	0	0	14	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046183	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(4)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021209	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683468	chr15:81683477	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TUBB2BP1(658),LINC02525(2204)	AL136979.1	./.	-/.	chr6:3180422	chr9:677771	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000227914.3	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565294	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51927),RBMY2WP(38065)	./.	./.	chrY:22724736	chrY:22724786	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(16),merge_adjacent	.	.	.
LINC00486	PWP2	+/.	+/.	chr2:32916556	chr21:44109940	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000241945.8	.	.	downstream	upstream	mismatches	.	.	.
NRP1	AC008014.1(15861),AC079906.1(77859)	-/.	./.	chr10:33334709	chr12:46892645	5'UTR	intergenic	translocation	0	0	0	15	1	low	.	.	.	.	.	ENSG00000099250.18	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	MICAL3	+/.	-/.	chr21:8442056	chr22:17796203	intron	intron	translocation	0	0	0	2539	0	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000243156.9	.	.	upstream	upstream	mismatches(1)	.	.	.
TNPO1(9677),AC008972.1(27225)	ZCCHC14	./.	-/.	chr5:72926410	chr16:87420184	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000140948.13	.	.	upstream	upstream	mismatches(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380594	chr20:36380603	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(42),low_entropy(11)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479826	chr10:104479835	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC02590(3050),RNU6-242P(44556)	LINC02590(3059),RNU6-242P(44547)	./.	./.	chr2:43046832	chr2:43046841	intergenic	intergenic	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	GSDMD	+/.	+/.	chr2:32916555	chr8:143557003	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000104518.11	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916408	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
NRIP3	RPL12P4(19713),LINC01440(314045)	-/-	./-	chr11:9003961	chr20:55094853	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22774),NRXN3(87321)	AC011474.1	./.	-/.	chr14:78083052	chr19:29447568	intergenic	intron	translocation	0	0	0	640	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078779	chr1:225078870	intron	intron	duplication/ITD	0	0	0	19	28	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	small_insert_size	.	.	.
RGS12	5_8S_rRNA(2088),FP236383.3(121622)	+/+	./+	chr4:3386018	chr21:8259021	exon	intergenic	translocation	0	0	0	0	35	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785767	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
TTLL7(35),AC104454.1(16680)	.	./.	./.	chr1:83999185	KI270733.1:176187	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16356),AC016134.1(9512)	./.	./.	chr15:41599880	chr15:41599945	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702335	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916414	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
RNU6-521P(183177),AC007274.3(50633)	RNU6-521P(183188),AC007274.3(50622)	./.	./.	chrY:7606335	chrY:7606346	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
OOSP2(8216),MS4A3(327)	EEF1A2	./.	-/.	chr11:60056260	chr20:63495978	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101210.13	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR5100(1036),RET(78347)	.	./.	./.	chr10:42998717	KI270733.1:131108	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
C18orf25(40648),RNF165(19169)	C18orf25(40676),RNF165(19141)	./.	./.	chr18:46307640	chr18:46307668	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ATXN7	LINC01667(149),RN7SL52P(64184)	+/.	./.	chr3:63900074	chr21:9838160	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396378	chr10:104396387	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
VXN(3267),MYBL1(40384)	VXN(3331),MYBL1(40320)	./.	./.	chr8:66521791	chr8:66521855	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(22),low_entropy(10)	.	.	.
ZEB2	ZEB2	-/.	-/.	chr2:144441165	chr2:144441180	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000169554.22	ENSG00000169554.22	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
KDM4B	AL592156.1(90988),BX842568.3(236)	+/.	./.	chr19:5090394	chrX:36957677	intron	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000127663.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ANXA3(18864),Y_RNA(2958)	ANXA3(18930),Y_RNA(2892)	./.	./.	chr4:78629315	chr4:78629381	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021211	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(56),low_entropy(1),merge_adjacent	.	.	.
HAT1	HAT1	+/.	+/.	chr2:171938020	chr2:171938075	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000128708.13	ENSG00000128708.13	.	.	upstream	downstream	duplicates(10),low_entropy(9)	.	.	.
SH3KBP1	SH3KBP1	-/.	-/.	chrX:19760033	chrX:19760042	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000147010.18	ENSG00000147010.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702351	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
UNC5A	LRRK1	+/+	+/+	chr5:176868961	chr15:101027902	CDS	intron	translocation	0	0	0	0	0	low	.	.	Immunoglobulin_I-set_domain(100%)|C-terminal_of_Roc__COR__domain(72%),Protein_kinase_domain(100%)	.	.	ENSG00000113763.12	ENSG00000154237.13	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419182	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
COL22A1	AGBL4	-/-	-/-	chr8:138802902	chr1:48564854	CDS	intron	translocation	0	0	0	0	0	low	.	.	von_Willebrand_factor_type_A_domain(100%)|	.	.	ENSG00000169436.17	ENSG00000186094.17	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	EML1	+/.	+/.	chr3:64736203	chr14:99796195	intron	intron	translocation/3'-3'	0	0	0	974	1790	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000066629.18	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
U95743.1(127345),ERCC4(13049)	FP671120.4	./.	+/.	chr16:13907105	chr21:8215637	intergenic	intron	translocation	0	0	0	10	2	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565363	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
RN7SKP48(34876),AC097488.1(110458)	FP236383.3	./.	+/.	chr4:85135699	chr21:8400020	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNMB2	HDAC7	+/.	-/.	chr3:178655138	chr12:47810805	intron	intron	translocation/5'-5'	0	0	0	13	8	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000061273.18	.	.	downstream	upstream	mismatches(1)	.	.	.
MYO6	MYO6	+/.	+/.	chr6:75787674	chr6:75787691	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000196586.16	ENSG00000196586.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
SGMS1-AS1	5_8S_rRNA(2082),FP236383.3(121628)	+/.	./.	chr10:50624032	chr21:8259015	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000226200.7	.	.	.	upstream	upstream	mismatches	.	.	.
TNRC18P2(7701),MIR4283-2(28314)	TNRC18P2(7716),MIR4283-2(28299)	./.	./.	chr7:63592776	chr7:63592791	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00940	.	-/.	./.	chr12:1933581	GL000220.1:111153	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
AP001823.1(3425),ELMOD1(763)	RNU6-521P(183190),AC007274.3(50620)	./.	./.	chr11:107590328	chrY:7606348	intergenic	intergenic	translocation	0	0	0	683	1172	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	GPC3	+/.	-/.	chr15:81565292	chrX:133661643	intron	intron	translocation/3'-3'	0	0	0	216	169	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
SAPCD2P1(11260),ZNF735(12937)	LINC01588	./.	-/.	chr7:64194153	chr14:50066268	intergenic	intron	translocation	0	0	0	78	4	low	.	.	.	.	.	.	ENSG00000214900.11	.	.	upstream	upstream	low_entropy	.	.	.
AL606468.1(18421),LINC02608(16598)	AC025580.2	./.	+/.	chr1:212208680	chr15:45462422	intergenic	intron	translocation	0	0	0	14	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	ABCG1	+/.	+/.	chr2:32916565	chr21:42219230	intron	5'UTR	translocation	0	0	0	1588	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000160179.19	.	.	downstream	upstream	mismatches	.	.	.
ZNF780A	.	-/.	./.	chr19:40090468	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197782.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RABGAP1L-DT	TRERF1	-/.	-/.	chr1:174121817	chr6:42262476	intron	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
HIPK1-AS1	HIPK1-AS1	-/.	-/.	chr1:113924602	chr1:113924613	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000235527.7	ENSG00000235527.7	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	chr5:103482858	chr15:45462431	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000226926.7	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916414	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117391	chr10:113117400	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
OR4F5(9742),AL627309.1(7968)	AC098828.1(31263),RPS16P2(17526)	./.	./.	chr1:81327	chr2:20138092	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627095.1(5391),ZNF669(8504)	AL627095.1(5448),ZNF669(8447)	./.	./.	chr1:247091458	chr1:247091515	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398693	chr7:54398702	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	low_entropy(4)	.	.	.
DLEU1	MT-RNR1	+/.	+/.	chr13:50533058	chrM:1503	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000176124.15	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(70),low_entropy(6)	.	.	.
TLE6	EDEM3(23136),NIBAN1(12681)	+/+	./-	chr19:2984356	chr1:184778043	exon	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000104953.20	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916565	chr21:8442048	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
NEURL1	LINC00540	+/.	+/.	chr10:103571846	chr13:22123376	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107954.10	ENSG00000276476.3	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419198	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(4)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269691	chr14:77269789	intron	intron	duplication/ITD	0	0	0	20	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
POM121L13P(41199),MTUS2(203)	KDM4B	./.	+/.	chr13:28820136	chr19:5090391	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00211	LINC00211	-/.	-/.	chr2:37846408	chr2:37846495	intron	intron	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	ENSG00000237803.6	ENSG00000237803.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TAB2(11975),ZC3H12D(23207)	TAB2(11986),ZC3H12D(23196)	./.	./.	chr6:149423588	chr6:149423599	intergenic	intergenic	duplication/ITD	0	0	0	295	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824760	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	145	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
NRIP3	AC010451.1	-/-	-/-	chr11:9003966	chr5:4990798	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	ENSG00000250481.2	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117393	chr10:113117402	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(20),low_entropy(1)	.	.	.
RN7SKP104(54636),TAC1(78188)	RN7SKP104(54649),TAC1(78175)	./.	./.	chr7:97653896	chr7:97653909	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
HDAC5	.	-/-	./+	chr17:44078034	KI270733.1:131114	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC009720.1(17443),PICART1(16062)	AC009720.1(17452),PICART1(16053)	./.	./.	chr17:50034287	chr17:50034296	intergenic	intergenic	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380592	chr20:36380655	intron	intron	duplication/ITD	0	0	0	126	126	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02740(10970),AC109810.1(675084)	KIRREL3	./.	-/.	chr11:42264691	chr11:126482760	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149571.12	.	.	upstream	downstream	mismatches(1)	.	.	.
TARS1(17734),TOMM40P3(16247)	AC105180.2(10848),ZFAT(76453)	./.	./.	chr5:33485825	chr8:134401335	intergenic	intergenic	translocation	0	0	0	0	120	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(23),mismatches(1)	.	.	.
LINC01198(14969),LRCH1(22241)	LINC01198(15030),LRCH1(22180)	./.	./.	chr13:46530927	chr13:46530988	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KRTAP10-4	TSPEAR	+/.	-/.	chr21:44599128	chr21:44599172	intron	intron	duplication/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000215454.6	ENSG00000175894.18	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
FHIT	DHFR	-/.	-/.	chr3:60578626	chr5:80651215	intron	intron	translocation	0	0	0	0	81	low	.	.	.	.	.	ENSG00000189283.10	ENSG00000228716.7	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021205	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(34)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10919),AP000345.1(8348)	./.	./.	chr22:23558642	chr22:23558716	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(41),low_entropy(9)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	FP236383.3	./.	+/.	chr3:103984260	chr21:8397815	intergenic	intron	translocation	0	0	0	6	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
FAM86LP(4836),AC079804.3(8186)	FAM86LP(4851),AC079804.3(8171)	./.	./.	chr7:6944439	chr7:6944454	intergenic	intergenic	duplication/ITD	0	0	0	3	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
XRCC5	XRCC5	+/.	+/.	chr2:216187822	chr2:216187835	intron	intron	duplication/ITD	0	0	0	55	1	low	.	.	.	.	.	ENSG00000079246.16	ENSG00000079246.16	.	.	upstream	downstream	duplicates(50),low_entropy(5)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8444182	intron	intron	translocation	0	0	0	1606	765	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683454	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
ATP2B2	LINC01950	-/-	-/+	chr3:10449762	chr5:106932149	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157087.20	ENSG00000251027.2	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092433	chr21:8448165	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916604	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
PSME2P2(14117),AL161421.1(189023)	PSME2P2(14132),AL161421.1(189008)	./.	./.	chr13:48785944	chr13:48785959	intergenic	intergenic	duplication/ITD	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565303	chr15:81565312	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CFTR	SLCO1B3	+/.	+/.	chr7:117448925	chr12:20872513	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000001626.16	ENSG00000111700.13	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNT2	ERN2	+/.	-/.	chr1:230187481	chr16:23702061	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641.10	ENSG00000134398.15	.	.	upstream	downstream	mismatches(1)	.	.	.
PLXNA4	INTS5(552),C11orf98(8963),LBHD1(8963)	-/.	./.	chr7:132189035	chr11:62653854	intron	intergenic	translocation	0	0	0	211	105	low	.	.	.	.	.	ENSG00000221866.9	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008014.1	.	+/.	./.	chr12:46670815	KI270733.1:178323	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257261.6	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SPDYE10P(12617),GTF2IP4(31181)	SPDYE10P(12688),GTF2IP4(31110)	./.	./.	chr7:73123757	chr7:73123828	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683459	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(1983),FP236383.3(121727)	+/.	./.	chr2:32916556	chr21:8258916	intron	intergenic	translocation	0	0	0	1606	101	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
UBE2W	GSE1	-/.	+/.	chr8:73820102	chr16:85583756	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000131149.19	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU6-551P(110281),PAPSS1(44775)	FP236383.3	./.	+/.	chr4:107545501	chr21:8444603	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106231148	chr14:106231139	exon	exon	duplication/ITD	0	0	0	7	8	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
RNU2-47P(81712),TYRP1(303276)	RNU2-47P(81729),TYRP1(303259)	./.	./.	chr9:12382163	chr9:12382180	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392889	chr11:88092443	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
DGKI	FP671120.4	-/.	+/.	chr7:137711022	chr21:8209535	intron	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000157680.16	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104136.1	AL353572.4(35734),SPATA31C2(16596)	-/.	./.	chr4:136004548	chr9:88112709	exon	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000251492.1	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC113208.3(5178),AC068338.1(9220)	DMD	./.	-/.	chr15:75240012	chrX:31138625	intergenic	intron	translocation	0	0	0	0	95	low	.	.	.	.	.	.	ENSG00000198947.17	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702337	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
INTS5(467),C11orf98(9048),LBHD1(9048)	INTS5(548),C11orf98(8967),LBHD1(8967)	./.	./.	chr11:62653769	chr11:62653850	intergenic	intergenic	duplication/ITD	0	0	0	105	105	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902251	chr4:94902264	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(30),low_entropy(1),merge_adjacent	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257417	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481711	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916404	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
CBLB	AC009161.1(206456),AC009110.1(32170)	-/.	./.	chr3:105786074	chr16:62564202	intron	intergenic	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000114423.23	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PRPF40A	FP671120.4	-/.	+/.	chr2:152717656	chr21:8209534	5'UTR	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000196504.19	ENSG00000278996.1	.	.	downstream	downstream	mismatches(1)	.	.	.
HDAC7	HDAC7	-/.	-/.	chr12:47810805	chr12:47810820	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000061273.18	ENSG00000061273.18	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
NUP210	TANGO6	-/.	+/.	chr3:13344473	chr16:69001408	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132182.12	ENSG00000103047.8	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565296	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
CCNYL5(86879),AL034397.1(16708)	CCNYL5(86932),AL034397.1(16655)	./.	./.	chrX:65909128	chrX:65909181	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
YWHAQ	CPXM1	-/-	-/+	chr2:9630456	chr20:2799607	5'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000134308.14	ENSG00000088882.8	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262466	chr6:42262473	intron	intron	duplication/ITD	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79733),AC016903.1(10551)	./.	./.	chr2:204459485	chr2:204459525	intergenic	intergenic	duplication/ITD	0	0	0	60	60	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674826	chr5:20674835	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC087854.1	.	-/.	./.	chr8:22486063	KI270733.1:154304	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000251034.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SGMS1-AS1	.	+/.	./.	chr10:50624032	GL000220.1:114252	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000226200.7	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AL157944.1	AL157944.1	-/.	-/.	chr1:82430858	chr1:82430871	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000233290.3	ENSG00000233290.3	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC060809.1	SMURF2	+/.	-/.	chr15:81565298	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565359	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL159169.1(42960),AL159169.3(11764)	TYRO3(16366),AC016134.1(9502)	./.	./.	chr9:14575002	chr15:41599955	intergenic	intergenic	translocation	0	0	0	0	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PDE4DIP	OTX2P1(77473),PCSK5(88596)	+/.	./.	chr1:148810794	chr9:75802048	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000178104.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280012	chr1:148280111	intron	intron	duplication/ITD	0	0	0	133	132	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193773	chr12:16193842	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
GABRA2	GABRA2	-/-	-/-	chr4:46389801	chr4:46389862	5'UTR	5'UTR	duplication/ITD	0	0	0	13	13	low	.	.	|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)	.	.	ENSG00000151834.16	ENSG00000151834.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LY6E(14619),C8orf31(758)	LY6E(14722),C8orf31(655)	./.	./.	chr8:143038451	chr8:143038554	intergenic	intergenic	duplication	0	0	0	171	168	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114462	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
ACTG1P23(47423),EI24P1(42049)	ACTG1P23(47479),EI24P1(41993)	./.	./.	chr3:176025993	chr3:176026049	intergenic	intergenic	duplication/ITD	0	0	0	56	56	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IL1RAPL1	IL1RAPL1	+/.	+/.	chrX:29543108	chrX:29543149	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000169306.10	ENSG00000169306.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC117383.1	RPSAP2(46091),NOP56P1(4638)	-/.	./.	chr3:141268207	chr6:28778995	intron	intergenic	translocation	0	0	0	9	28	low	.	.	.	.	.	ENSG00000249417.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702368	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CSK	AC008738.4	+/+	+/-	chr15:74802960	chr19:33217934	3'UTR	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	Protein_kinase_domain(100%),SH2_domain(100%),SH3_domain(100%)|	.	.	ENSG00000103653.16	ENSG00000267714.2	.	.	downstream	downstream	mismatches(1)	.	.	.
TRIM62	RPSAP2(46118),NOP56P1(4611)	-/.	./.	chr1:33174595	chr6:28779022	intron	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000116525.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	AC005323.1	+/.	+/.	chr2:32916556	chr17:10612777	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000214970.8	.	.	downstream	upstream	mismatches	.	.	.
TMEM154	ZFR	-/.	-/.	chr4:152661286	chr5:32370305	intron	intron	translocation/5'-5'	0	0	0	99	6	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000056097.16	.	.	upstream	upstream	low_entropy	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143162	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
ANGPT1	MACROD2	-/.	+/.	chr8:107291889	chr20:14784683	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000154188.10	ENSG00000172264.17	.	.	upstream	downstream	mismatches	.	.	.
COL18A1	SGSM1	+/.	+/.	chr21:45478842	chr22:24806515	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000182871.16	ENSG00000167037.19	.	.	upstream	upstream	mismatches(1)	.	.	.
ILKAP	FP671120.4(931),FP671120.10(6777)	-/.	./.	chr2:238203140	chr21:8228577	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CMAHP	FASN	-/.	-/.	chr6:25343856	chr17:82097715	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	ENSG00000169710.9	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	chr7:112751479	chr21:8397441	intron	intron	translocation/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785669	chr2:101785767	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(15)	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620587	chr5:110620596	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
CFAP58	.	+/.	./.	chr10:104396411	KI270733.1:148270	intron	intergenic	translocation	0	0	0	214	.	low	.	.	.	.	.	ENSG00000120051.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RNU1-154P(722),AC239860.2(27383)	RNU1-154P(731),AC239860.2(27374)	./.	./.	chr1:145432415	chr1:145432424	intergenic	intergenic	duplication/ITD	0	0	0	188	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(4)	.	.	.
RPS2P18(22133),AC092573.1(17574)	RPS2P18(22199),AC092573.1(17508)	./.	./.	chr2:173320645	chr2:173320711	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280010	chr1:148280109	intron	intron	duplication/ITD	0	0	0	133	132	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(19),low_entropy(12)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143166	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI2	DMD	-/.	-/.	chr7:78083399	chrX:31138625	intron	intron	translocation	0	0	0	10	95	low	.	.	.	.	.	ENSG00000187391.22	ENSG00000198947.17	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01198(14967),LRCH1(22243)	AC023034.1	./.	+/.	chr13:46530925	chr15:81565300	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
PTPN2	PTPN2	-/.	-/.	chr18:12870463	chr18:12870476	intron	intron	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	ENSG00000175354.20	ENSG00000175354.20	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
ZP4	PDCD6IPP2(913),AC174469.1(21747)	-/.	./.	chr1:237883665	chr15:28859920	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000116996.9	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01392(192674),POLR2DP2(79338)	LINC01392(192718),POLR2DP2(79294)	./.	./.	chr7:115424029	chr7:115424073	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
DENND3(7630),SLC45A4(3728)	ZNF462	./.	+/.	chr8:141203438	chr9:106864116	intergenic	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	.	ENSG00000148143.13	.	.	downstream	downstream	mismatches(1)	.	.	.
VENTXP1(17640),AC112493.1(144238)	VENTXP1(17684),AC112493.1(144194)	./.	./.	chrX:26898669	chrX:26898713	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC093627.22	CHRNB4	-/.	-/.	chr7:117610	chr15:78672957	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	ENSG00000117971.12	.	.	upstream	downstream	mismatches(2)	.	.	.
LINC00486	.	+/.	./.	chr2:32916559	KI270733.1:131139	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
RUNX1	RUNX1	-/.	-/.	chr21:35093000	chr21:35093042	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000159216.19	ENSG00000159216.19	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
AC016694.1(51882),RBMY2WP(38110)	AC016694.1(51926),RBMY2WP(38066)	./.	./.	chrY:22724741	chrY:22724785	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
C1QTNF12	IGH@-ext	-/.	-/.	chr1:1245901	chr14:105867114	intron	exon	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	IGH.g@-ext	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396371	chr10:104396386	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MED6P1(8575),AL353149.1(200731)	MED6P1(8588),AL353149.1(200718)	./.	./.	chr10:88058398	chr10:88058411	intergenic	intergenic	duplication/ITD	0	0	0	111	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(85),low_entropy(13)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092433	chr11:88092446	intron	intron	duplication/ITD	0	0	0	0	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.3	FMR1-AS1	+/.	-/.	chr21:8399951	chrX:147911827	intron	intergenic	translocation/3'-3'	0	0	0	729	0	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000268066.5	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484562	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	chr7:76580348	chr7:76580408	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000205485.13	ENSG00000205485.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NUP98	DAZAP2	-/.	+/.	chr11:3702363	chr12:51248435	intron	intron	translocation/3'-3'	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000183283.16	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	chr10:80511712	chr10:80511725	intron	intron	duplication/ITD	0	0	0	39	39	low	.	.	.	.	.	ENSG00000108219.15	ENSG00000108219.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
SHISA5(10328),PFKFB4(2530)	DYRK1A(45870),AP001407.1(21749)	./.	./.	chr3:48515154	chr21:37572228	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NOL4	NOL4	-/.	-/.	chr18:34203667	chr18:34203718	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000101746.16	ENSG00000101746.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683523	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
AC245123.1	AC245123.1	-/.	-/.	chr8:2565381	chr8:2565431	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000277526.5	ENSG00000277526.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	RNU6-521P(183186),AC007274.3(50624)	-/.	./.	chr11:82143174	chrY:7606344	intron	intergenic	translocation	0	0	0	719	1172	low	.	.	.	.	.	ENSG00000245832.7	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046192	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(4)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021199	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(25),merge_adjacent	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479906	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
AC060809.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565300	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	downstream	low_entropy	.	.	.
C1QTNF12	TTPAL	-/.	+/.	chr1:1245901	chr20:44489043	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	ENSG00000124120.11	.	.	downstream	downstream	mismatches(1)	.	.	.
TPTE2P1(13480),RPL34P27(6610)	.	./.	./.	chr13:24981967	GL000220.1:158230	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
PPP2CA	FP236383.3	-/.	+/.	chr5:134225650	chr21:8442056	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000113575.10	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	.	./.	./.	chr2:218108703	KI270733.1:176201	intergenic	intergenic	translocation	0	0	0	125	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(9),uninteresting_contigs(2)	.	.	.
RNU7-53P(79092),ARL2BPP4(63647)	RNU7-53P(79105),ARL2BPP4(63634)	./.	./.	chr5:130465772	chr5:130465785	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565356	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
ADAMTS9-AS2	BMPR1B	+/.	+/.	chr3:64736203	chr4:94902258	intron	intron	translocation/3'-3'	0	0	0	974	1847	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000138696.11	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
RPS3AP40(7060),AC004923.1(1072)	RPS3AP40(7071),AC004923.1(1061)	./.	./.	chr11:67933491	chr11:67933502	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL451061.1(55887),PLEKHG1(33696)	FAM214B	./.	-/.	chr6:150566187	chr9:35110205	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000005238.20	.	.	upstream	downstream	mismatches(1)	.	.	.
ATP8B4	ATP8B4	-/.	-/.	chr15:50072927	chr15:50072936	intron	intron	duplication/ITD	0	0	0	53	0	low	.	.	.	.	.	ENSG00000104043.15	ENSG00000104043.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PAX7(35935),TAS1R2(54798)	BSN	./.	+/.	chr1:18784801	chr3:49628037	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000164061.5	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479887	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
DLC1	DLC1	-/.	-/.	chr8:13143809	chr8:13143853	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000164741.15	ENSG00000164741.15	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(222),AC106894.1(74375)	./.	./.	chr4:16898832	chr4:16898900	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
PTPRD	NELL1	-/.	+/.	chr9:9189823	chr11:20787518	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000153707.17	ENSG00000165973.19	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396538	chr8:22396553	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NRIP3	AP002371.1(8130),AP003072.4(53694)	-/-	./+	chr11:9003961	chr11:93080161	5'UTR	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR5100(1036),RET(78347)	FP236383.3	./.	+/.	chr10:42998717	chr21:8442050	intergenic	intron	translocation	0	0	0	8	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
HAT1	SLC25A12	+/.	-/.	chr2:171938020	chr2:171938075	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000128708.13	ENSG00000115840.14	.	.	upstream	downstream	duplicates(10),low_entropy(9)	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392889	chr10:104479902	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
ADORA2B	GRM7	+/+	+/-	chr17:15944999	chr3:7665020	5'UTR	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000170425.3	ENSG00000196277.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565343	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CD81	NFIX	+/+	+/+	chr11:2377523	chr19:13080069	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	|CTF/NF-I_family_transcription_modulation_region(49%)	.	.	ENSG00000110651.12	ENSG00000008441.18	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP98	SMAGP	-/.	-/.	chr11:3702361	chr12:51248435	intron	intron	translocation	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000170545.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674825	chr5:20674834	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RILPL1	AC140725.2(7606),OR4F4(11232)	-/.	./.	chr12:123532314	chr15:101910810	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188026.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117385	chr10:113117394	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
AC097488.1(125523),ARHGAP24(102715)	AC097488.1(125571),ARHGAP24(102667)	./.	./.	chr4:85372435	chr4:85372483	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(2)	.	.	.
UOX	SAPCD2P1(11260),ZNF735(12937)	-/.	./.	chr1:84396655	chr7:64194153	intron	intergenic	translocation	0	0	0	5	78	low	.	.	.	.	.	ENSG00000240520.7	.	.	.	downstream	upstream	low_entropy	.	.	.
FECHP1(162420),KRT8P18(179431)	AC092910.3	./.	+/.	chr3:35036274	chr3:120125715	intergenic	intron	deletion	0	0	0	237	306	low	.	.	.	.	.	.	ENSG00000242622.2	.	.	downstream	upstream	duplicates(9),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396384	chr10:104396393	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(2),low_entropy(4),merge_adjacent	.	.	.
GSE1	LINC02864	+/+	-/+	chr16:85556157	chr18:73168244	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131149.19	ENSG00000263711.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176183	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
IGF2	5_8S_rRNA(1962),FP236383.3(121748)	-/.	./.	chr11:2138068	chr21:8258895	intron	intergenic	translocation	0	0	0	0	47	low	.	.	.	.	.	ENSG00000167244.21	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	C5orf47	./.	+/.	chr1:47437186	chr5:173985151	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000185056.10	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021210	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479900	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates	.	.	.
TYRO3(16299),AC016134.1(9569)	TYRO3(16366),AC016134.1(9502)	./.	./.	chr15:41599888	chr15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(58),low_entropy(13)	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640171	chr2:198640182	intron	intron	duplication/ITD	0	0	0	68	65	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	chr7:129531132	chr15:45462579	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702345	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(14),low_entropy(1),merge_adjacent	.	.	.
ERBB4	ERBB4	-/.	-/.	chr2:212188185	chr2:212188200	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000178568.15	ENSG00000178568.15	.	.	upstream	downstream	duplicates(4),low_entropy(11)	.	.	.
APCDD1L-DT	APCDD1L-DT	+/.	+/.	chr20:58590213	chr20:58590228	intron	intron	duplication/ITD	0	0	0	21	10	low	.	.	.	.	.	ENSG00000231290.6	ENSG00000231290.6	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262491	chr6:42262500	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702349	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(72),low_entropy(3)	.	.	.
GALNT2	AC114321.1(205467),AC026403.1(21399)	+/.	./.	chr1:230187481	chr5:166360906	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000143641.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MT-RNR2	.	+/.	./.	chrM:1794	KI270733.1:133191	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092439	chr21:8220959	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
DLGAP2(553),AC100810.6(17244)	ARHGEF10	./.	+/.	chr8:1709029	chr8:1824691	intergenic	intron	deletion/read-through	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000104728.16	.	.	downstream	upstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275765	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
EPHA8	FP236383.3	+/.	+/.	chr1:22588283	chr21:8441947	intron	intron	translocation	0	0	0	7	47	low	.	.	.	.	.	ENSG00000070886.12	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392815	chr1:90392824	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AKAP7(176776),RPL21P67(8748)	AKAP7(176826),RPL21P67(8698)	./.	./.	chr6:131460311	chr6:131460361	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC02590(3051),RNU6-242P(44555)	LINC02590(3060),RNU6-242P(44546)	./.	./.	chr2:43046833	chr2:43046842	intergenic	intergenic	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916411	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	.	+/.	./.	chr21:8399951	GL000220.1:116391	intron	intergenic	translocation	0	0	0	729	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
XRCC5	RNU7-53P(79092),ARL2BPP4(63647)	+/.	./.	chr2:216187822	chr5:130465772	intron	intergenic	translocation	0	0	0	55	2	low	.	.	.	.	.	ENSG00000079246.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785689	chr2:101785788	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
AP004606.1	AP004606.1	+/.	+/.	chr11:133544827	chr11:133544840	intron	intron	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	ENSG00000287068.1	ENSG00000287068.1	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
MIR4300HG	C12orf45	-/.	+/.	chr11:82143174	chr12:105046182	intron	intron	translocation	0	0	0	719	1664	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000151131.11	.	.	downstream	downstream	mismatches(1)	.	.	.
TBX2	TBX2	+/.	+/.	chr17:61402925	chr17:61402971	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000121068.14	ENSG00000121068.14	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MYRIP	MAMDC2-AS1	+/.	-/.	chr3:39832710	chr9:70108085	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000170011.14	ENSG00000204706.14	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP98	XRCC6P2(77100),MAMLD1(51426)	-/.	./.	chr11:3702366	chrX:150309996	intron	intergenic	translocation	0	0	0	437	3	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396370	chr10:104396386	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BNC2	BNC2	-/-	-/-	chr9:16412702	chr9:16412766	3'UTR	3'UTR	duplication/ITD	0	0	0	21	21	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068.18	ENSG00000173068.18	.	.	upstream	downstream	duplicates(13),low_entropy(6)	.	.	.
AC087863.2	AC087863.2	-/.	-/.	chr12:118855023	chr12:118855036	intron	intron	duplication/ITD	0	0	0	39	0	low	.	.	.	.	.	ENSG00000256149.1	ENSG00000256149.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
UBE2W	AL392185.1(27960),AL354861.2(15868)	-/.	./.	chr8:73820101	chr9:95634286	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SRRM4	SRRM4	+/.	+/.	chr12:119137582	chr12:119137634	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000139767.10	ENSG00000139767.10	.	.	upstream	downstream	duplicates(11),low_entropy(4)	.	.	.
CXXC4	AL121790.1(4101),FOXA1(6326)	-/.	./.	chr4:104491476	chr14:37583226	CDS	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000168772.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117395	chr10:113117404	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
CACNA1A	CACNA1A	-/.	-/.	chr19:13336585	chr19:13336598	intron	intron	duplication/ITD	0	0	0	14	4	low	.	.	.	.	.	ENSG00000141837.22	ENSG00000141837.22	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LEMD1-DT(27311),CDK18(8261)	LEMD1-DT(27320),CDK18(8252)	./.	./.	chr1:205496335	chr1:205496344	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR4300HG	EML1	-/.	+/.	chr11:82143174	chr14:99796199	intron	intron	translocation/3'-3'	0	0	0	719	1790	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000066629.18	.	.	downstream	upstream	mismatches(1)	.	.	.
AL713866.2(5657),LINC01680(35763)	FP236383.3	./.	+/.	chr1:191185396	chr21:8441654	intergenic	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
DLG2	AL139383.1	-/.	-/.	chr11:85484189	chr13:33517098	intron	intron	translocation	0	0	0	62	9	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000230490.3	.	.	upstream	downstream	mismatches(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458051	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(2)	.	.	.
ESR1	ESR1	+/.	+/.	chr6:151669140	chr6:151669189	intron	intron	duplication/ITD	0	0	0	126	126	low	.	.	.	.	.	ENSG00000091831.24	ENSG00000091831.24	.	.	upstream	downstream	duplicates(68),low_entropy(10)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96182),RORB-AS1(4791)	./.	./.	chr9:74480733	chr9:74480760	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797734	chr17:57797749	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	duplicates(3),low_entropy(4)	.	.	.
UBAP1L	AC008798.1(9216),AC008507.3(4777)	-/-	./+	chr15:65102283	chr19:29911085	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000246922.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC007128.2(92198),NXPH1(68)	CR392039.1(647),CR392039.3(8419)	./.	./.	chr7:8433541	chr21:8988077	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GTF2IRD1P1	NRP1	-/.	-/.	chr7:66824572	chr10:33334709	intron	5'UTR	translocation/3'-3'	0	0	0	1	15	low	.	.	.	.	.	ENSG00000230583.7	ENSG00000099250.18	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	SMURF2	+/.	-/.	chr15:81565294	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
SLC35E4	.	+/+	./+	chr22:30636545	GL000220.1:114258	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000100036.13	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
EFNB1(4569),PJA1(314122)	.	./.	./.	chrX:68846729	KI270733.1:176441	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565296	chr15:81565305	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	AC007652.1(21838),AC018647.3(82549)	./.	./.	chr2:106577227	chr7:35532101	intergenic	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670928	chr2:23670937	intron	intron	duplication/3'-3'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
U6(246395),HSP90AB2P(35608)	DENND3(7497),SLC45A4(3861)	./.	./.	chr4:13297806	chr8:141203305	intergenic	intergenic	translocation	0	0	0	672	3	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046191	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(19),low_entropy(1),merge_adjacent	.	.	.
AL031430.1(3069),AL353604.1(15546)	MIR4300HG	./.	-/.	chr1:37139215	chr11:82143175	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	ATL2	+/.	-/.	chr2:32916556	chr2:38340189	intron	intron	inversion	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000119787.14	.	.	downstream	downstream	mismatches	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479899	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(4),merge_adjacent	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702327	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(309),low_entropy(20)	.	.	.
CCNT2-AS1	CCNT2-AS1	-/.	-/.	chr2:134845510	chr2:134845525	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000224043.8	ENSG00000224043.8	.	.	upstream	downstream	duplicates(14),low_entropy(7)	.	.	.
KDM6B	.	+/.	./.	chr17:7852758	GL000220.1:158236	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132510.11	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL590068.2(4119),AL590068.3(3405)	CYP2E1	./.	+/.	chr10:30584301	chr10:133529715	intergenic	intron	deletion	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000130649.10	.	.	downstream	upstream	mismatches(1)	.	.	.
UTRN(24892),AL023283.1(418619)	GRTP1(225),ADPRHL1(35237)	./.	./.	chr6:144877926	chr13:113364373	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM83B	FP236383.3	+/.	+/.	chr6:54859661	chr21:8397832	intron	intron	translocation	0	0	0	3	450	low	.	.	.	.	.	ENSG00000168143.9	ENSG00000280441.3	.	.	downstream	upstream	duplicates(5),mismatches(2)	.	.	.
RPL34-DT	FP236383.3	-/.	+/.	chr4:108568686	chr21:8442045	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000234492.4	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
CREB3L3	DMD	+/.	-/.	chr19:4156108	chrX:31138625	intron	intron	translocation	0	0	0	0	95	low	.	.	.	.	.	ENSG00000060566.14	ENSG00000198947.17	.	.	upstream	upstream	mismatches(1)	.	.	.
SSPOP	BICC1	+/.	+/.	chr7:149787750	chr10:58688003	exon	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000197558.13	ENSG00000122870.12	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
GDF6	INTS5(546),C11orf98(8969),LBHD1(8969)	-/-	./-	chr8:96144245	chr11:62653848	3'UTR	intergenic	translocation	0	0	0	0	105	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL033504.1	AL033504.1	+/.	+/.	chr6:147790729	chr6:147790818	intron	intron	duplication/ITD	0	0	0	14	24	low	.	.	.	.	.	ENSG00000227681.5	ENSG00000227681.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
MXD4	.	-/.	./.	chr4:2261627	GL000220.1:127651	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000123933.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916406	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
LINC02392	NOS1	+/+	-/+	chr12:90295495	chr12:117265422	exon	CDS	deletion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258183.6	ENSG00000089250.19	.	.	downstream	upstream	mismatches(1)	.	.	.
LHX9(23325),NEK7(198191)	ANO5	./.	+/.	chr1:197958803	chr11:21918565	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000171714.12	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104465.1(74377),AC092810.3(31650)	AC104465.1(74424),AC092810.3(31603)	./.	./.	chr1:209075853	chr1:209075900	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ATAD3C	AC025465.1	+/.	-/.	chr1:1458240	chr5:124505746	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000215915.10	ENSG00000248296.1	.	.	downstream	downstream	mismatches(1)	.	.	.
C1QTNF12	FAM27C	-/.	+/.	chr1:1245901	chr9:61856449	intron	exon	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	ENSG00000231527.7	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702341	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
AL359636.2	FXNP1(22681),NRXN3(87414)	+/.	./.	chr9:122508157	chr14:78082959	intron	intergenic	translocation	0	0	0	0	455	low	.	.	.	.	.	ENSG00000234156.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	CLCN4	-/.	+/.	chr10:104479811	chrX:10175855	intron	intron	translocation	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000073464.13	.	.	upstream	upstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679858	chr21:39679875	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916554	chr21:8444474	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
SLC25A48	.	+/.	./.	chr5:135832435	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000145832.14	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
C1QTNF12	LINC01597	-/.	-/.	chr1:1245901	chr20:30284066	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	ENSG00000205611.5	.	.	downstream	upstream	mismatches(1)	.	.	.
BUB3P1(59585),AC002386.1(267706)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr7:109054614	chr15:29674126	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125706	chr3:120125756	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125722	chr3:120125755	intron	intron	duplication/ITD	0	0	0	305	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702356	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(14),mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275780	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(12),merge_adjacent	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670924	chr2:23670933	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RUFY4(18122),CXCR2(16586)	FP236383.3	./.	+/.	chr2:218108703	chr21:8397834	intergenic	intron	translocation	0	0	0	125	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(9),homopolymer(2)	.	.	.
RPL34-DT	.	-/.	./.	chr4:108568686	KI270733.1:131103	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000234492.4	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
ATXN7	IGH@-ext	+/.	-/.	chr3:63900074	chr14:105867114	intron	exon	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	IGH.g@-ext	.	.	downstream	downstream	mismatches(1)	.	.	.
BAG4(969),AC084024.4(9687)	NCOA5LP(16498),CNEP1R1(39182)	./.	./.	chr8:38214270	chr16:49985228	intergenic	intergenic	translocation	0	0	0	1	20	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679809	chr21:39679875	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214782	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736202	chr3:64736264	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SFN(3787),GPN2(7889)	SFN(3839),GPN2(7837)	./.	./.	chr1:26868243	chr1:26868295	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
AL356218.2(30146),AQP3(457)	AC091806.1	./.	+/.	chr9:33440699	chrX:40289160	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000236393.2	.	.	downstream	downstream	mismatches(1)	.	.	.
FO393413.1(58398),RNU7-65P(12608)	FO393413.1(58411),RNU7-65P(12595)	./.	./.	chr6:49332192	chr6:49332205	intergenic	intergenic	duplication/ITD	0	0	0	13	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
AL357513.1(53848),TBC1D32(180171)	TCF7L2	./.	+/.	chr6:120899323	chr10:113117445	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000148737.17	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262480	chrX:106941412	intron	3'UTR	translocation	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001652.1	5_8S_rRNA(2080),FP236383.3(121630)	-/.	./.	chr11:58919736	chr21:8259013	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000255523.1	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092332	chr11:88092445	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092348	chr11:88092446	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(74),low_entropy(26)	.	.	.
GALNS	AL020994.3(16481),AL020994.1(4653)	-/.	./.	chr16:88855907	chr22:27302830	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141012.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP210	HORMAD2	-/.	+/.	chr3:13344471	chr22:30095265	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132182.12	ENSG00000176635.18	.	.	upstream	downstream	mismatches(1)	.	.	.
CDH12	CDH12	-/.	-/.	chr5:22529191	chr5:22529202	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000154162.15	ENSG00000154162.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046196	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(19),low_entropy(1)	.	.	.
ZNF701	ZNF808	+/.	+/.	chr19:52561159	chr19:52561174	intron	intron	duplication	0	0	0	13	13	low	.	.	.	.	.	ENSG00000167562.13	ENSG00000198482.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902259	chr4:94902268	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(10)	.	.	.
DNASE1	AC025465.1	+/+	-/-	chr16:3662374	chr5:124505745	3'UTR	intron	translocation	0	0	0	0	8	low	.	.	Endonuclease/Exonuclease/phosphatase_family(100%)|	.	.	ENSG00000213918.10	ENSG00000248296.1	.	.	downstream	downstream	mismatches(1)	.	.	.
MYOM2(281212),AC245519.1(47112)	ZFPM2	./.	+/.	chr8:2446764	chr8:104827532	intergenic	intron	inversion	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000169946.14	.	.	downstream	downstream	mismatches(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491174	chr11:105491185	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(7),low_entropy(7)	.	.	.
PDP1	AC016304.1(54229),TMCO5A(376607)	+/.	./.	chr8:93917357	chr15:37545332	intron	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000164951.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC090946.1(73632),GALNT15(129795)	AC090946.1(73641),GALNT15(129786)	./.	./.	chr3:16044885	chr3:16044894	intergenic	intergenic	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125731	chr11:3702314	intron	intron	translocation	0	0	0	305	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	upstream	upstream	duplicates(9),mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143148	3'UTR	intron	translocation	0	0	0	0	748	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
NIFK-AS1	RASGEF1C	+/.	-/.	chr2:121714886	chr5:180120728	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000236859.7	ENSG00000146090.16	.	.	downstream	downstream	mismatches(1)	.	.	.
CARD16	CARD16	-/.	-/.	chr11:105077836	chr11:105077845	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000204397.9	ENSG00000204397.9	.	.	upstream	downstream	duplicates(1)	.	.	.
AL132708.1	SERPINA9	+/.	-/.	chr14:94464271	chr14:94464319	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000256357.1	ENSG00000170054.16	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC01791	LINC01791	+/.	+/.	chr19:31183173	chr19:31183239	intron	intron	duplication/ITD	0	0	0	64	64	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000267777.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TSPEAR	KRTAP10-4	-/.	+/.	chr21:44599128	chr21:44599172	intron	intron	duplication/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000175894.18	ENSG00000215454.6	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
MIR3663HG(22834),RPL12P26(4226)	MIR3663HG(22851),RPL12P26(4209)	./.	./.	chr10:117191942	chr10:117191959	intergenic	intergenic	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396370	chr10:104396448	intron	intron	duplication/ITD	0	0	0	217	214	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC35E4	.	+/+	./+	chr22:30636545	GL000220.1:158230	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000100036.13	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419215	chr14:106419126	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(8),low_entropy(1)	.	.	.
GHR(6373),AC113368.1(887)	GHR(6382),AC113368.1(878)	./.	./.	chr5:42728251	chr5:42728260	intergenic	intergenic	duplication/ITD	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(5)	.	.	.
KCNQ3	KCNQ3	-/.	-/.	chr8:132230435	chr8:132230448	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000184156.17	ENSG00000184156.17	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
C10orf143	GSE1	-/.	+/.	chr10:130103976	chr16:85583757	intron	intron	translocation	0	0	0	3	7	low	.	.	.	.	.	ENSG00000237489.5	ENSG00000131149.19	.	.	upstream	upstream	mismatches(1)	.	.	.
U6(246354),HSP90AB2P(35649)	U6(246395),HSP90AB2P(35608)	./.	./.	chr4:13297765	chr4:13297806	intergenic	intergenic	duplication/ITD	0	0	0	672	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(302),low_entropy(12)	.	.	.
LINC00486	DIS3L2	+/.	+/.	chr2:32916556	chr2:232083276	intron	intron	deletion	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000144535.20	.	.	downstream	upstream	mismatches	.	.	.
AC026765.3	.	+/.	./.	chr12:114698741	KI270733.1:131205	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257817.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TNR	NCOA5LP(16498),CNEP1R1(39182)	-/.	./.	chr1:175517022	chr16:49985228	intron	intergenic	translocation	0	0	0	27	20	low	.	.	.	.	.	ENSG00000116147.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RSRC1	RSRC1	+/.	+/.	chr3:158106572	chr3:158106587	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000174891.13	ENSG00000174891.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	DENND3(7640),SLC45A4(3718)	+/.	./.	chr8:22396540	chr8:141203448	intron	intergenic	duplication	0	0	0	308	0	low	.	.	.	.	.	ENSG00000104635.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	GSE1	./.	+/.	chr3:103984260	chr16:85583756	intergenic	intron	translocation	0	0	0	6	7	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	upstream	upstream	mismatches(1)	.	.	.
AC027369.3	HDHD5-AS1(6337),ADA2(7008)	-/.	./.	chr11:48886835	chr22:17171782	intron	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000254728.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPRIN1(8931),SNCB(995)	.	./.	./.	chr5:176619087	GL000220.1:158236	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),uninteresting_contigs(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	chr3:96618112	chr21:8399899	5'UTR	intron	translocation/3'-3'	0	0	0	11	7	low	.	.	.	.	.	ENSG00000269028.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
PLCB4	.	+/.	./.	chr20:9262355	GL000220.1:116457	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000101333.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC016766.1	CYP3A4	-/.	-/.	chr2:164102755	chr7:99759539	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000237844.2	ENSG00000160868.15	.	.	upstream	downstream	mismatches(1)	.	.	.
CHD7	LINC00824	+/+	-/+	chr8:60679081	chr8:128417440	5'UTR/splice-site	intron	deletion/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000171316.12	ENSG00000254275.6	.	.	downstream	upstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	chr14:99796188	chr14:99796203	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
AL589669.1	AL589669.1	+/.	+/.	chrX:147239338	chrX:147239347	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000284377.1	ENSG00000284377.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
BRD1	SSH1	-/-	-/-	chr22:49774102	chr12:108787839	3'UTR	3'UTR	translocation	0	0	0	0	0	low	.	.	Bromodomain(100%),Enhancer_of_polycomb-like(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%),PWWP_domain(100%)|	.	.	ENSG00000100425.18	ENSG00000084112.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479893	chr14:82214962	intron	intergenic	translocation	0	0	0	988	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BMPR1B	MIR4300HG	+/.	-/.	chr4:94902262	chr11:82143174	intron	intron	translocation/3'-3'	0	0	0	1847	719	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
FECHP1(162420),KRT8P18(179431)	AC092910.3	./.	+/.	chr3:35036274	chr3:120125717	intergenic	intron	deletion	0	0	0	237	306	low	.	.	.	.	.	.	ENSG00000242622.2	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
SBK1	SBK1	+/+	+/+	chr16:28322976	chr16:28322894	3'UTR	3'UTR	duplication/ITD	0	0	0	1	0	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000188322.8	ENSG00000188322.8	.	.	downstream	upstream	low_entropy(1)	.	.	.
MFF-DT	GSE1	-/-	+/+	chr2:227268528	chr16:85583756	exon	intron	translocation	0	0	0	0	7	low	.	.	|Protein_of_unknown_function_(DUF3736)(100%)	.	.	ENSG00000236432.8	ENSG00000131149.19	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683525	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
FAM171A1	KDM4B	-/-	+/+	chr10:15371059	chr19:5090391	5'UTR	intron	translocation	0	0	0	0	19	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000148468.17	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
TTLL7(35),AC104454.1(16680)	FP236383.3	./.	+/.	chr1:83999185	chr21:8442050	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
H3P11(26452),THRAP3P1(156974)	AC023503.1	./.	+/.	chr3:31295858	chr3:83413126	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000288004.1	.	.	downstream	upstream	mismatches(1)	.	.	.
SGMS1	.	-/.	./.	chr10:50624032	KI270733.1:131108	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000198964.14	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916559	chr21:8214817	intron	intron	translocation/5'-5'	0	0	0	1606	2530	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565363	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(9),low_entropy(7)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565346	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AL008633.1	AL008633.1	-/.	-/.	chrX:128354518	chrX:128354572	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000225689.2	ENSG00000225689.2	.	.	upstream	downstream	duplicates(5),low_entropy(7)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565294	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
USH2A	NCAPG2	-/.	-/.	chr1:216352104	chr7:158632014	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000042781.14	ENSG00000146918.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AC019257.1	KIAA1549L	-/.	+/.	chr8:1973995	chr11:33557935	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000253764.3	ENSG00000110427.17	.	.	upstream	downstream	mismatches(1)	.	.	.
SOGA1	SOGA1	-/.	-/.	chr20:36810702	chr20:36810756	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000149639.15	ENSG00000149639.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
UPP2	UPP2	+/.	+/.	chr2:158058374	chr2:158058389	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000007001.13	ENSG00000007001.13	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021212	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(90),low_entropy(1),merge_adjacent	.	.	.
UGT3A2	PAXBP1(167),C21orf62-AS1(141)	-/.	./.	chr5:36067823	chr21:32771959	intron	intergenic	translocation	0	0	0	3	759	low	.	.	.	.	.	ENSG00000168671.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702308	chr11:3702368	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(16),low_entropy(4)	.	.	.
DDB2	FP671120.7(729),5_8S_rRNA(538)	+/.	./.	chr11:47233103	chr21:8256243	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	duplicates(2)	.	.	.
C1QTNF12	FP326651.1	-/.	+/.	chr1:1245901	chr9:65386862	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	ENSG00000287329.1	.	.	downstream	upstream	mismatches(1)	.	.	.
FRMD5	KCTD15(71707),AC008556.1(18882)	-/.	./.	chr15:44009763	chr19:33887470	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171877.21	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FXNP1(22770),NRXN3(87325)	LINC01082(3097),LINC01081(18603)	./.	./.	chr14:78083048	chr16:86202817	intergenic	intergenic	translocation	0	0	0	640	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GMCL2(6807),HNRNPAB(10355)	KANK1	./.	+/.	chr5:178194178	chr9:677771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107104.20	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565317	chr15:81565326	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
LINC02620	CHST11	-/.	+/.	chr10:104479811	chr12:104706484	intron	intron	translocation/5'-5'	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000171310.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	USP9YP6	+/.	-/.	chr15:81565292	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
GRM4	GRM4	-/.	-/.	chr6:34033662	chr6:34033674	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000124493.14	ENSG00000124493.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046196	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(19),low_entropy(1)	.	.	.
TAB2(11981),ZC3H12D(23201)	TAB2(11990),ZC3H12D(23192)	./.	./.	chr6:149423594	chr6:149423603	intergenic	intergenic	duplication/ITD	0	0	0	295	295	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125727	chr11:3702314	intron	intron	translocation	0	0	0	305	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	upstream	upstream	duplicates(2)	.	.	.
AL606468.1(18421),LINC02608(16598)	AC025580.2	./.	+/.	chr1:212208680	chr15:45462579	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RABGAP1L-DT	TRERF1	-/.	-/.	chr1:174121817	chr6:42262478	intron	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
ATXN7	FAM27C	+/.	+/.	chr3:63900074	chr9:61856449	intron	exon	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000163635.20	ENSG00000231527.7	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683500	chr15:81683513	intron	intron	duplication/3'-3'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC245123.1	AC245123.1	-/.	-/.	chr8:2565381	chr8:2565435	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000277526.5	ENSG00000277526.5	.	.	upstream	downstream	duplicates(10),low_entropy(7)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565296	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
AC026116.1(81902),DPY19L2(116974)	AC026116.1(81976),DPY19L2(116900)	./.	./.	chr12:63441939	chr12:63442013	intergenic	intergenic	duplication/ITD	0	0	0	4	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DZIP3	DZIP3	+/.	+/.	chr3:108631056	chr3:108631069	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000198919.13	ENSG00000198919.13	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LNP1(22670),TMEM45A(13630)	LNP1(22705),TMEM45A(13595)	./.	./.	chr3:100478989	chr3:100479024	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
LINC01194(30563),LINC02220(79142)	LINC01194(30576),LINC02220(79129)	./.	./.	chr5:12834926	chr5:12834939	intergenic	intergenic	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785694	chr2:101785793	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702346	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479828	chr10:104479837	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
USP13	KDM4B	+/.	+/.	chr3:179653420	chr19:5090391	intron	intron	translocation/3'-3'	0	0	0	1	19	low	.	.	.	.	.	ENSG00000058056.10	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021213	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(100),low_entropy(1),merge_adjacent	.	.	.
AC092910.3	AC008083.2(60394),PPIAP45(2199)	+/.	./.	chr3:120125714	chr12:47339415	intron	intergenic	translocation	0	0	0	306	89	low	.	.	.	.	.	ENSG00000242622.2	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785779	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
SOGA1	SOGA1	-/.	-/.	chr20:36810702	chr20:36810753	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000149639.15	ENSG00000149639.15	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
FMR1-AS1	.	-/.	./.	chrX:147911827	GL000220.1:116388	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000268066.5	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275757	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(16),low_entropy(10)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262475	chr6:42262484	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(9),low_entropy(46)	.	.	.
FGFR1(15353),C8orf86(26647)	LINC00489(4203),AL162293.1(49567)	./.	./.	chr8:38484187	chr20:37627322	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GSTA9P(5223),AL121969.1(7906)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr6:52962744	chr15:29674126	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	chr7:129531132	chr15:45462150	intergenic	intron	translocation	0	0	0	14	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916403	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
MICAL3	.	-/.	./.	chr22:17796203	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000243156.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01781(319116),MTND2P30(114883)	RIPK3(4785),U6(7250)	./.	./.	chr1:80965907	chr14:24344807	intergenic	intergenic	translocation	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
L29074.2	FP236383.3	+/+	+/+	chrX:147911827	chr21:8444186	exon	intron	translocation	0	0	0	0	765	low	.	.	.	.	.	ENSG00000274086.1	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
EXOC6B	EXOC6B	-/.	-/.	chr2:72631509	chr2:72631520	intron	intron	duplication/ITD	0	0	0	0	5	low	.	.	.	.	.	ENSG00000144036.16	ENSG00000144036.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
CASC8	FP236383.3	-/.	+/.	chr8:127481284	chr21:8444186	intron	intron	translocation/3'-3'	0	0	0	0	765	low	.	.	.	.	.	ENSG00000246228.6	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR5100(1036),RET(78347)	5_8S_rRNA(2082),FP236383.3(121628)	./.	./.	chr10:42998717	chr21:8259015	intergenic	intergenic	translocation	0	0	0	8	2548	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AC087854.1	.	-/.	./.	chr8:22486063	KI270733.1:154141	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000251034.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021202	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(18),merge_adjacent	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380243	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RHBDF1(353),MPG(299)	FP236383.3	./.	+/.	chr16:76708	chr21:8442056	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8442048	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AC087854.1	FP236383.11(1897),FP236383.6(559)	-/.	./.	chr8:22486063	chr21:8464695	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000251034.2	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NR5A1	5_8S_rRNA(1962),FP236383.3(121748)	-/-	./-	chr9:124507410	chr21:8258895	5'UTR	intergenic	translocation	0	0	0	0	47	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CYP4B1(9501),CYP4Z2P(14181)	RILPL1	./.	-/.	chr1:46828914	chr12:123532314	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188026.13	.	.	upstream	upstream	mismatches(1)	.	.	.
LDB2(152),AC106894.1(74445)	LDB2(219),AC106894.1(74378)	./.	./.	chr4:16898830	chr4:16898897	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046196	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(19),low_entropy(1),merge_adjacent	.	.	.
IDUA	AC025470.2	+/.	+/.	chr4:993642	chr5:57533337	intron	exon	translocation	0	0	0	14	6	low	.	.	.	.	.	ENSG00000127415.13	ENSG00000250961.2	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
ADORA2B	LINC01741	+/+	+/-	chr17:15944999	chr1:177705126	5'UTR	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000170425.3	ENSG00000236720.2	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916559	chr21:8444501	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117370	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702350	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(9),mismatches(1)	.	.	.
PTPRN2	PCSK6	-/.	-/.	chr7:158428357	chr15:101358825	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155093.19	ENSG00000140479.18	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479799	chr10:104479902	intron	intron	duplication	0	0	0	840	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736268	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(85),low_entropy(19)	.	.	.
MSR1(4060),AC011586.2(27208)	CFAP58	./.	+/.	chr8:16571550	chr10:104396370	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106231128	chr14:106231192	exon	exon	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RPS8P3(339099),AC016383.3(38351)	PITPNB	./.	-/.	chr18:52184727	chr22:27919297	intergenic	5'UTR	translocation	1	0	0	0	0	low	.	.	.	.	.	.	ENSG00000180957.18	.	.	upstream	downstream	min_support	.	.	.
ADAMTS9-AS2	ALOX15P1	+/.	+/.	chr3:64736203	chr17:6659828	intron	intron	translocation	0	0	0	974	14	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000274114.2	.	.	upstream	downstream	mismatches(1)	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	KI270733.1:178744	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
KCNMB2	AL050402.1(52849),AL133456.1(50930)	+/.	./.	chr3:178655096	chr22:27512909	intron	intergenic	translocation	0	0	0	13	1	low	.	.	.	.	.	ENSG00000197584.12	.	.	.	upstream	downstream	duplicates(1)	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670918	chr2:23670931	intron	intron	duplication/3'-3'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	chr11:121765676	chr11:121765685	intron	intron	duplication/ITD	0	0	0	23	16	low	.	.	.	.	.	ENSG00000286044.1	ENSG00000286044.1	.	.	upstream	downstream	duplicates(2)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916404	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902248	chr4:94902263	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(19),low_entropy(1),merge_adjacent	.	.	.
UTRN	AXIN2	+/.	-/.	chr6:144648111	chr17:65557693	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000168646.13	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683500	chr15:81683513	intron	intron	duplication/ITD	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
USH2A	SLC25A21	-/.	-/.	chr1:216352104	chr14:36968070	intron	intron	translocation/3'-3'	0	0	0	6	1	low	.	.	.	.	.	ENSG00000042781.14	ENSG00000183032.12	.	.	downstream	downstream	mismatches(1)	.	.	.
CDH8(89412),RNU6-21P(61093)	CDH8(89465),RNU6-21P(61040)	./.	./.	chr16:62126447	chr16:62126500	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AC008014.1	.	+/.	./.	chr12:46670815	KI270733.1:133244	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257261.6	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479799	chr10:104479906	intron	intron	duplication	0	0	0	840	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
USH2A	LYRM1(87),DNAH3(8018)	-/.	./.	chr1:216352104	chr16:20925093	intron	intergenic	translocation	0	0	0	6	1	low	.	.	.	.	.	ENSG00000042781.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785667	chr2:101785762	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DZIP1	DZIP1	-/.	-/.	chr13:95637605	chr13:95637620	intron	intron	duplication/ITD	0	0	0	31	0	low	.	.	.	.	.	ENSG00000134874.18	ENSG00000134874.18	.	.	upstream	downstream	duplicates(24),low_entropy(6)	.	.	.
RN7SL776P(55515),PHBP14(192153)	RN7SL776P(55570),PHBP14(192098)	./.	./.	chr4:167456277	chr4:167456332	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
SLC25A48	FP236383.3	+/.	+/.	chr5:135832435	chr21:8397826	intron	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	ENSG00000145832.14	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214793	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
CAMTA1	ANK1	+/.	-/.	chr1:6920854	chr8:41810916	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000171735.19	ENSG00000029534.21	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565356	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22767),NRXN3(87328)	./.	./.	chr14:78082946	chr14:78083045	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AL033504.1	AL033504.1	+/.	+/.	chr6:147790729	chr6:147790827	intron	intron	duplication/ITD	0	0	0	14	23	low	.	.	.	.	.	ENSG00000227681.5	ENSG00000227681.5	.	.	upstream	downstream	duplicates(9),low_entropy(6)	.	.	.
AC005740.2(18187),NDFIP1(53467)	FXNP1(22673),NRXN3(87422)	./.	./.	chr5:142055312	chr14:78082951	intergenic	intergenic	translocation	0	0	0	0	455	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PCAT14(10850),AP000345.1(8417)	PCAT14(10865),AP000345.1(8402)	./.	./.	chr22:23558647	chr22:23558662	intergenic	intergenic	duplication/ITD	0	0	0	140	140	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNU1-154P(730),AC239860.2(27375)	RNU1-154P(739),AC239860.2(27366)	./.	./.	chr1:145432423	chr1:145432432	intergenic	intergenic	duplication/ITD	0	0	0	186	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(3)	.	.	.
TGM3(8186),TGM6(31636)	TGM3(8201),TGM6(31621)	./.	./.	chr20:2349265	chr20:2349280	intergenic	intergenic	duplication/ITD	0	0	0	15	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(8)	.	.	.
PRKCA	NFIX	+/+	+/+	chr17:66302744	chr19:13080069	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	|CTF/NF-I_family_transcription_modulation_region(49%)	.	.	ENSG00000154229.12	ENSG00000008441.18	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGAP44	ARHGAP44	+/.	+/.	chr17:12903090	chr17:12903099	intron	intron	duplication/ITD	0	0	0	7	6	low	.	.	.	.	.	ENSG00000006740.17	ENSG00000006740.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308655	chr3:19308666	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
GNGT1	GNGT1	+/.	+/.	chr7:93597383	chr7:93597394	intron	intron	duplication/ITD	0	0	0	15	0	low	.	.	.	.	.	ENSG00000127928.13	ENSG00000127928.13	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
DENND3(7495),SLC45A4(3863)	AL357833.1(94714),AL450322.2(97938)	./.	./.	chr8:141203303	chr10:3651028	intergenic	intergenic	translocation	0	0	0	3	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	LINC01962	./.	-/.	chr4:186749803	chr5:181190238	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000248473.2	.	.	upstream	downstream	mismatches(1)	.	.	.
MARCHF1	MIR1303(4926),Y_RNA(14839)	-/.	./.	chr4:163761493	chr5:154690787	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000145416.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
WWTR1	WWTR1	-/.	-/.	chr3:149656750	chr3:149656792	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000018408.15	ENSG00000018408.15	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
COL23A1	LINC01544(42854),RNF152(6749)	-/.	./.	chr5:178327345	chr18:61801318	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000050767.18	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916413	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
AC078909.2(56399),Metazoa_SRP(50234)	AC078909.2(56412),Metazoa_SRP(50221)	./.	./.	chr15:37166383	chr15:37166396	intergenic	intergenic	duplication/ITD	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
PRKN	PRKN	-/.	-/.	chr6:161469548	chr6:161469557	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000185345.23	ENSG00000185345.23	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC002072.1	AC002072.1	+/.	+/.	chrX:113133823	chrX:113133832	intron	intron	duplication/ITD	0	0	0	6	1	low	.	.	.	.	.	ENSG00000286072.1	ENSG00000286072.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	.	./.	./.	chr3:103984260	KI270733.1:131103	intergenic	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446359	chr12:50446368	intron	intron	duplication/ITD	0	0	0	86	70	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(15),low_entropy(1)	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16354),AC016134.1(9514)	./.	./.	chr15:41599880	chr15:41599943	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(16),low_entropy(9)	.	.	.
TLE4	SRXN1(61),SCRT2(8335)	+/.	./.	chr9:79572888	chr20:653261	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000106829.20	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL356130.1(30315),LINC01622(19002)	PRIMA1	./.	-/.	chr6:939321	chr14:93781516	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000175785.13	.	.	downstream	upstream	mismatches(1)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236819	chr15:33236828	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581672	chr5:93581683	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TBC1D8	AL358053.1(206652),AL591644.1(221029)	-/.	./.	chr2:101134198	chr9:1756755	intron	intergenic	translocation	0	0	0	2	40	low	.	.	.	.	.	ENSG00000204634.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL34-DT	.	-/.	./.	chr4:108568686	GL000220.1:158219	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000234492.4	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
AGBL3	LINC02620	+/.	-/.	chr7:135111985	chr10:104479906	intron	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	ENSG00000146856.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	chr14:99796190	chr14:99796201	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(18),low_entropy(1),merge_adjacent	.	.	.
AC073346.1	AC073346.1	+/.	+/.	chr7:113103321	chr7:113103336	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000225457.1	ENSG00000225457.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL359837.1(13525),LARP7P1(33090)	.	./.	./.	chr1:203367176	GL000220.1:127653	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481628	chr17:39481709	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR5100(1036),RET(78347)	.	./.	./.	chr10:42998717	KI270733.1:176187	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
MTRNR2L12	DLG2	-/.	-/.	chr3:96618115	chr11:85484197	5'UTR	intron	translocation	0	0	0	11	62	low	.	.	.	.	.	ENSG00000269028.3	ENSG00000150672.18	.	.	downstream	upstream	mismatches(1)	.	.	.
PAXBP1(57),C21orf62-AS1(251)	PAXBP1(68),C21orf62-AS1(240)	./.	./.	chr21:32771849	chr21:32771860	intergenic	intergenic	duplication/ITD	0	0	0	721	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
NXPH3	.	+/.	./.	chr17:49576096	GL000220.1:127651	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000182575.8	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC245297.1	OTX2P1(77479),PCSK5(88590)	-/.	./.	chr1:149319443	chr9:75802054	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000215861.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR5100(1036),RET(78347)	.	./.	./.	chr10:42998717	GL000220.1:158224	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
FECHP1(162420),KRT8P18(179431)	NUP98	./.	-/.	chr3:35036274	chr11:3702357	intergenic	intron	translocation	0	0	0	237	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(11),mismatches(1)	.	.	.
AP000797.1(179401),LINC02151(366007)	AP000797.1(179499),LINC02151(365909)	./.	./.	chr11:116130892	chr11:116130990	intergenic	intergenic	duplication/ITD	0	0	0	0	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(6)	.	.	.
FXNP1(22689),NRXN3(87406)	FXNP1(22697),NRXN3(87398)	./.	./.	chr14:78082967	chr14:78082975	intergenic	intergenic	duplication/ITD	0	0	0	673	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
RMDN2-AS1	MMP2	-/.	+/.	chr2:38020787	chr16:55433378	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235848.4	ENSG00000087245.13	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(92915),RNA5SP103(1239)	SUGCT(37659),LINC01450(66245)	./.	./.	chr2:128443842	chr7:40898422	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(6),homopolymer(1)	.	.	.
SYDE2(865),C1orf52(48072)	AC027369.3	./.	-/.	chr1:85201881	chr11:48893564	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000254728.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8444476	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
PDGFRB	AL021937.3	-/.	-/.	chr5:150124193	chr22:32328459	exon	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000113721.14	ENSG00000234626.2	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
INTS5(552),C11orf98(8963),LBHD1(8963)	RNU6-521P(183186),AC007274.3(50624)	./.	./.	chr11:62653854	chrY:7606344	intergenic	intergenic	translocation	0	0	0	105	1172	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NTM	NTM	+/.	+/.	chr11:132278738	chr11:132278784	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000182667.14	ENSG00000182667.14	.	.	upstream	downstream	low_entropy(2)	.	.	.
DHFR	.	-/.	./.	chr5:80650927	GL000220.1:157837	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
PCSK6	AL078622.1(96550),Z82202.2(17322)	-/.	./.	chr15:101358825	chr22:49149099	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140479.18	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916405	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193825	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(10)	.	.	.
RGN	RGN	+/.	+/.	chrX:47086735	chrX:47086796	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000130988.13	ENSG00000130988.13	.	.	upstream	downstream	small_insert_size	.	.	.
KCNB2	KCNB2	+/.	+/.	chr8:72882521	chr8:72882556	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000182674.6	ENSG00000182674.6	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
MIR5100(1036),RET(78347)	FP236383.3	./.	+/.	chr10:42998717	chr21:8397820	intergenic	intron	translocation	0	0	0	8	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670926	chr2:23670935	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(4)	.	.	.
GPR39	VWA8	+/.	-/.	chr2:132513760	chr13:41961032	intron	5'UTR	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000183840.7	ENSG00000102763.18	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092910.3	SMAGP	+/.	-/.	chr3:120125713	chr12:51248435	intron	intron	translocation	0	0	0	306	16	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000170545.17	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RTL1	KIAA2012-AS1	-/-	-/-	chr14:100881152	chr2:202105678	CDS	intron	translocation	0	1	0	0	13	low	.	.	Domain_of_unknown_function_(DUF4939)(100%),RNase_H-like_domain_found_in_reverse_transcriptase(100%)|	.	.	ENSG00000254656.3	ENSG00000222035.4	.	.	upstream	downstream	duplicates(1),min_support	.	.	.
LINC00486	GPR26	+/.	+/.	chr2:32916501	chr10:123666522	intron	CDS	translocation	0	0	0	1644	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000154478.4	.	.	downstream	upstream	mismatches	.	.	.
AC105362.1(6245),LINC00613(54834)	AC105362.1(6313),LINC00613(54766)	./.	./.	chr4:135812149	chr4:135812217	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CNTN3	ADRB1	-/.	+/.	chr3:74374048	chr10:114045909	intron	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113805.8	ENSG00000043591.6	.	.	downstream	upstream	mismatches(1)	.	.	.
GABPB2	CYP3A4	+/.	-/.	chr1:151087305	chr7:99759539	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143458.12	ENSG00000160868.15	.	.	downstream	downstream	mismatches(1)	.	.	.
ACTG1P23(47423),EI24P1(42049)	ACTG1P23(47492),EI24P1(41980)	./.	./.	chr3:176025993	chr3:176026062	intergenic	intergenic	duplication/ITD	0	0	0	56	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(27),low_entropy(17)	.	.	.
LRRK1	MMP2	+/.	+/.	chr15:101003905	chr16:55433378	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154237.13	ENSG00000087245.13	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR3663HG(22834),RPL12P26(4226)	MIR3663HG(22843),RPL12P26(4217)	./.	./.	chr10:117191942	chr10:117191951	intergenic	intergenic	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
SND1	BOP1	+/.	-/.	chr7:128022712	chr8:144266400	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000197157.11	ENSG00000261236.8	.	.	downstream	downstream	mismatches	.	.	.
UST	UST	+/.	+/.	chr6:149034836	chr6:149034849	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000111962.8	ENSG00000111962.8	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
U6(246395),HSP90AB2P(35608)	AP001977.1	./.	+/.	chr4:13297806	chr11:121765669	intergenic	intron	translocation	0	0	0	672	23	low	.	.	.	.	.	.	ENSG00000286044.1	.	.	downstream	upstream	mismatches(1)	.	.	.
MMADHC-DT(7983),AC016682.1(95203)	MMADHC-DT(8029),AC016682.1(95157)	./.	./.	chr2:150055430	chr2:150055476	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214693	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
NGB	NGB	-/.	-/.	chr14:77269728	chr14:77269741	intron	intron	duplication/ITD	0	0	0	79	78	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NPAS2	TMEM105(3174),AC027601.5(5335)	+/.	./.	chr2:100974819	chr17:81333848	CDS	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000170485.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176406	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419141	chr14:106419128	exon	exon	duplication/ITD	0	0	0	71	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(4),low_entropy(1)	.	.	.
AC087564.1	AC087564.1	+/+	+/+	chr16:51441083	chr16:51441074	exon	exon	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000285367.1	ENSG00000285367.1	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
LDB2(152),AC106894.1(74445)	LDB2(217),AC106894.1(74380)	./.	./.	chr4:16898830	chr4:16898895	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046194	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(379),low_entropy(25)	.	.	.
CTNNA2	CTNNA2	+/.	+/.	chr2:79384377	chr2:79384434	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000066032.19	ENSG00000066032.19	.	.	upstream	downstream	duplicates(3),low_entropy(4),merge_adjacent	.	.	.
TMEM132B(44064),AC005252.2(102227)	TMEM132B(44120),AC005252.2(102171)	./.	./.	chr12:125706441	chr12:125706497	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458066	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC008894.3	AC027369.3	-/-	-/-	chr19:16077350	chr11:48886837	exon	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000279198.1	ENSG00000254728.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565305	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(12),low_entropy(10)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702324	chr11:3702333	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(21),low_entropy(4)	.	.	.
RNF220	TMEM184C	+/.	+/.	chr1:44417643	chr4:147649187	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000187147.18	ENSG00000164168.8	.	.	downstream	downstream	mismatches(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458017	intron	intron	duplication/ITD	0	0	0	69	38	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674830	chr5:20674839	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(11),low_entropy(1),merge_adjacent	.	.	.
LINC01592	NRP1	-/.	-/.	chr8:68940496	chr10:33334709	intron	5'UTR	translocation	0	0	0	1	15	low	.	.	.	.	.	ENSG00000253658.6	ENSG00000099250.18	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC29A4	ACTN4	+/.	+/.	chr7:5297386	chr19:38666177	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164638.11	ENSG00000130402.13	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275753	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PAXBP1(83),C21orf62-AS1(225)	PAXBP1(92),C21orf62-AS1(216)	./.	./.	chr21:32771875	chr21:32771884	intergenic	intergenic	duplication/ITD	0	0	0	760	721	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
LINC02740(10970),AC109810.1(675084)	BANP	./.	+/.	chr11:42264691	chr16:87953032	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000172530.20	.	.	upstream	downstream	mismatches(1)	.	.	.
LY6E(14617),C8orf31(760)	AP005436.1	./.	-/.	chr8:143038449	chr11:88092439	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
FYB2	.	-/.	./.	chr1:56742060	KI270733.1:131005	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000187889.13	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC109492.1	AC109492.1	+/.	+/.	chr5:87019431	chr5:87019444	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000249061.1	ENSG00000249061.1	.	.	upstream	downstream	duplicates(1),low_entropy(7)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092346	chr11:88092437	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683455	chr15:81683470	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(74),low_entropy(27)	.	.	.
U3(136504),NXNP1(203197)	U3(136519),NXNP1(203182)	./.	./.	chr1:218678403	chr1:218678418	intergenic	intergenic	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(6)	.	.	.
U3(104497),GPC1(41723)	CDK14	./.	+/.	chr2:240393940	chr7:90766754	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000058091.17	.	.	upstream	upstream	mismatches(1)	.	.	.
TGM3(7996),TGM6(31826)	NLGN4X	./.	-/.	chr20:2349075	chrX:6227403	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000146938.16	.	.	downstream	downstream	mismatches(1)	.	.	.
ADGRL4(37504),AL353651.2(4141),AL353651.1(4141)	ADGRL4(37519),AL353651.2(4126),AL353651.1(4126)	./.	./.	chr1:79319628	chr1:79319643	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916525	chr21:8397818	intron	intron	translocation	0	0	0	1632	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308665	chr3:19308674	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CFAP77	ACYP1	+/.	-/.	chr9:132457328	chr14:75068465	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000188523.9	ENSG00000119640.9	.	.	downstream	downstream	mismatches(1)	.	.	.
DOCK10(98133),NYAP2(259109)	LIPG(20228),SMUG1P1(30937)	./.	./.	chr2:225140601	chr18:49619413	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8217065	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565293	chr15:81565348	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
KLRF1	AL158800.1(129323),LINC02325(79970)	+/.	./.	chr12:9838550	chr14:97347101	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000150045.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262493	chr6:42262502	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458057	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(5),low_entropy(6)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397827	intron	intron	translocation	0	0	0	1606	450	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	HAUS7	+/.	-/.	chr2:32916556	chrX:153492742	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000213397.11	.	.	downstream	upstream	mismatches	.	.	.
RBMS3	RBMS3	+/.	+/.	chr3:29884418	chr3:29884470	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000144642.22	ENSG00000144642.22	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
FECHP1(162381),KRT8P18(179470)	FECHP1(162418),KRT8P18(179433)	./.	./.	chr3:35036235	chr3:35036272	intergenic	intergenic	duplication/ITD	0	0	0	237	237	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL355674.1(96156),RORB-AS1(4817)	AL355674.1(96169),RORB-AS1(4804)	./.	./.	chr9:74480734	chr9:74480747	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
AC092910.3	AC078909.2(1349),Metazoa_SRP(105284)	+/.	./.	chr3:120125755	chr15:37111333	intron	intergenic	translocation	0	0	0	306	28	low	.	.	.	.	.	ENSG00000242622.2	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GPHN	ARNT2	+/.	+/.	chr14:66801549	chr15:80508509	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000171723.16	ENSG00000172379.21	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479809	chr10:104479908	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(55),low_entropy(40)	.	.	.
SHLD1	SHLD1	+/.	+/.	chr20:5817393	chr20:5817433	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000171984.15	ENSG00000171984.15	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661619	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(4),low_entropy(6)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479833	chr10:104479842	intron	intron	duplication/ITD	0	0	0	992	984	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(6)	.	.	.
ASTN2	.	-/.	./.	chr9:117110116	KI270733.1:178270	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000148219.18	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702343	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(13),low_entropy(1)	.	.	.
ITPK1(9268),CYB5AP3(12478)	MAP2K6	./.	+/.	chr14:93125588	chr17:69532261	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000108984.15	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFPM2	CACNG5	+/.	+/.	chr8:104827531	chr17:66842892	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000075429.9	.	.	downstream	upstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046188	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(5)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275763	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(25),low_entropy(10)	.	.	.
AC012085.1(14957),CRADD(20832)	AC012085.1(15011),CRADD(20778)	./.	./.	chr12:93656543	chr12:93656597	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(20),low_entropy(3)	.	.	.
FXNP1(22692),NRXN3(87403)	FXNP1(22701),NRXN3(87394)	./.	./.	chr14:78082970	chr14:78082979	intergenic	intergenic	duplication/ITD	0	0	0	673	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GPR39	CHD3	+/.	+/.	chr2:132513760	chr17:7885000	intron	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000183840.7	ENSG00000170004.17	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01392(192680),POLR2DP2(79332)	LINC01392(192693),POLR2DP2(79319)	./.	./.	chr7:115424035	chr7:115424048	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	chr1:208413786	chr15:45462231	intergenic	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661620	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CD96	CD96	+/.	+/.	chr3:111313193	chr3:111313228	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000153283.13	ENSG00000153283.13	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FREM2	FREM2	+/.	+/.	chr13:38813459	chr13:38813554	intron	intron	duplication/ITD	0	0	0	5	2	low	.	.	.	.	.	ENSG00000150893.11	ENSG00000150893.11	.	.	upstream	downstream	low_entropy(2)	.	.	.
U6(246354),HSP90AB2P(35649)	U6(246392),HSP90AB2P(35611)	./.	./.	chr4:13297765	chr4:13297803	intergenic	intergenic	duplication/ITD	0	0	0	672	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
LGSN	.	-/.	./.	chr6:63308024	GL000220.1:127652	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000146166.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22757),NRXN3(87338)	./.	./.	chr14:78082946	chr14:78083035	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(20),low_entropy(7)	.	.	.
RTL1	KIAA2012-AS1	-/-	-/-	chr14:100881153	chr2:202105679	CDS	intron	translocation	0	0	0	0	13	low	.	.	Domain_of_unknown_function_(DUF4939)(100%),RNase_H-like_domain_found_in_reverse_transcriptase(100%)|	.	.	ENSG00000254656.3	ENSG00000222035.4	.	.	upstream	downstream	duplicates(11)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638063	chr7:116638076	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
H4-16	5_8S_rRNA(1997),DUX4L32(19581)	-/.	./.	chr12:14769961	chr20:29299243	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000197837.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC135726.1(9992),AC006236.1(16241)	AC135726.1(10046),AC006236.1(16187)	./.	./.	chr17:5714048	chr17:5714102	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046189	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(13),merge_adjacent	.	.	.
CAPNS1	LINC00486	+/+	+/-	chr19:36141147	chr2:32916597	CDS	intron	translocation/5'-5'	0	0	0	3	46	low	.	.	.	.	.	ENSG00000126247.11	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
AC023154.1	RPSAP2(46118),NOP56P1(4611)	+/+	./-	chr4:52950461	chr6:28779022	exon	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000248115.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2	SKP2P1(52319),DIAPH2(10441)	+/.	./.	chr3:178655148	chrX:96674222	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000197584.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DIAPH2-AS1(70963),AL354685.1(133711)	DIAPH2-AS1(71010),AL354685.1(133664)	./.	./.	chrX:97713552	chrX:97713599	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113388	chr1:109113466	intron	intron	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
BMS1P21(4204),MBL1P(8118)	BMS1P21(4217),MBL1P(8105)	./.	./.	chr10:79912060	chr10:79912073	intergenic	intergenic	duplication/ITD	0	0	0	95	94	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(79),low_entropy(14)	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078811	chr1:225078898	intron	intron	duplication/ITD	0	0	0	27	23	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236826	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138628	chrX:31138641	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131009	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
TPT1P14(48516),RPL35AP37(90458)	TPT1P14(48531),RPL35AP37(90443)	./.	./.	chrX:15026979	chrX:15026994	intergenic	intergenic	duplication/ITD	0	0	0	121	121	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(111),low_entropy(10)	.	.	.
PLD5	GRM7	-/-	+/-	chr1:242524157	chr3:7665022	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000180287.17	ENSG00000196277.16	.	.	upstream	downstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679809	chr21:39679818	intron	intron	duplication/ITD	0	0	0	81	0	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176397	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC026765.3	FP236383.3	+/.	+/.	chr12:114698741	chr21:8442147	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000257817.2	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AL136084.1(5771),NME2P3(12404)	AL136084.1(5826),NME2P3(12349)	./.	./.	chr9:98878186	chr9:98878241	intergenic	intergenic	duplication/ITD	0	0	0	3	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
ADORA2B	AC077690.1	+/+	-/-	chr17:15944999	chr3:7665020	5'UTR	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000170425.3	ENSG00000270207.2	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262505	chr6:42262514	intron	intron	duplication/ITD	0	0	0	3754	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ERC2	ERC2	-/.	-/.	chr3:56343150	chr3:56343193	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000187672.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC004052.1	ACTN4	+/.	+/.	chr4:104345000	chr19:38666177	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251170.6	ENSG00000130402.13	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
SLC29A4P1	ACTN4	-/.	+/.	chr7:57019839	chr19:38666177	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000214668.4	ENSG00000130402.13	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
SLC6A14	SLC6A14	+/.	+/.	chrX:116445458	chrX:116445508	intron	intron	duplication/ITD	0	0	0	687	687	low	.	.	.	.	.	ENSG00000268104.3	ENSG00000268104.3	.	.	upstream	downstream	duplicates(37),low_entropy(3),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262476	chr6:42262485	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CTNNA2	CTNNA2	+/.	+/.	chr2:79384373	chr2:79384434	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000066032.19	ENSG00000066032.19	.	.	upstream	downstream	duplicates(46),low_entropy(14)	.	.	.
LRRTM4	LRRTM4	-/.	-/.	chr2:77480823	chr2:77480866	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000176204.14	ENSG00000176204.14	.	.	upstream	downstream	duplicates(11),low_entropy(4)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396542	chr8:22396553	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
LINC01571(134926),C16orf97(82353)	LINC01571(134939),C16orf97(82340)	./.	./.	chr16:51923134	chr16:51923147	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419210	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC134503.1(4553),GAPDHP36(6426)	AC134503.1(4574),GAPDHP36(6405)	./.	./.	chr3:180205765	chr3:180205786	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702364	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(8)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702351	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(14),merge_adjacent	.	.	.
CMAHP	NR1H4	-/.	+/.	chr6:25226641	chr12:100546641	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000168405.17	ENSG00000012504.15	.	.	downstream	downstream	mismatches(1)	.	.	.
FECHP1(162381),KRT8P18(179470)	FECHP1(162417),KRT8P18(179434)	./.	./.	chr3:35036235	chr3:35036271	intergenic	intergenic	duplication/ITD	0	0	0	237	237	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL022726.1(101771),AL008627.1(46470)	AL136979.1	./.	-/.	chr6:19995985	chr9:677771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000227914.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679813	chr21:39679822	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702353	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(8),merge_adjacent	.	.	.
AC021749.1(124901),AC021820.1(84421)	AC021749.1(124916),AC021820.1(84406)	./.	./.	chr11:39999289	chr11:39999304	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNU7-29P(10972),AL627313.1(26973)	.	./.	./.	chr1:26613404	KI270733.1:131005	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LY6E(14738),C8orf31(639)	GRM5(111193),TYR(737)	./.	./.	chr8:143038570	chr11:89177138	intergenic	intergenic	translocation	0	0	0	85	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	NDOR1	+/.	+/.	chr2:32916501	chr9:137205865	intron	CDS	translocation	0	0	0	1644	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188566.14	.	.	downstream	upstream	mismatches	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308656	chr3:19308667	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565311	chr15:81565320	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
HRAS	KDM4B	-/.	+/.	chr11:535338	chr19:5090395	5'UTR	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000174775.17	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
EYA4	DPY19L2P3(48017),WIPF3(15875)	+/.	./.	chr6:133271699	chr7:29790611	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112319.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RGS12	SLC2A6(8615),MYMK(26844)	+/+	./-	chr4:3386018	chr9:133487742	exon	intergenic	translocation	0	0	0	0	9	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269727	chr14:77269742	intron	intron	duplication/ITD	0	0	0	79	78	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL365204.3(90886),AL513317.1(22401)	AL365204.3(90897),AL513317.1(22390)	./.	./.	chr9:24047330	chr9:24047341	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LEF1	CMAHP	-/.	-/.	chr4:108082770	chr6:25226641	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000138795.10	ENSG00000168405.17	.	.	downstream	downstream	mismatches(1)	.	.	.
DPP6	AC087564.1	+/.	+/.	chr7:153918567	chr16:51441060	intron	exon	translocation/3'-3'	0	0	0	0	32	low	.	.	.	.	.	ENSG00000130226.17	ENSG00000285367.1	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8414022	chr21:8414078	intron	intron	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565311	chr15:81565320	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
INTS5(467),C11orf98(9048),LBHD1(9048)	INTS5(552),C11orf98(8963),LBHD1(8963)	./.	./.	chr11:62653769	chr11:62653854	intergenic	intergenic	duplication/ITD	0	0	0	105	105	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(3)	.	.	.
RTN4IP1	MT-RNR1	-/.	+/.	chr6:106581377	chrM:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000130347.13	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
FP236383.3	.	+/.	./.	chr21:8444189	GL000220.1:116388	intron	intergenic	translocation	0	0	0	765	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125716	chr3:120125755	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RILPL1	OR4F17(5817),WBP1LP11(22566)	-/.	./.	chr12:123532314	chr19:122919	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188026.13	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22748),NRXN3(87347)	AC011474.1	./.	-/.	chr14:78083026	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
LINC01144	GPR39	+/+	+/-	chr1:45304504	chr2:132513760	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281912.1	ENSG00000183840.7	.	.	downstream	downstream	mismatches(1)	.	.	.
ARHGEF6	ARHGEF6	-/.	-/.	chrX:136729008	chrX:136729017	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000129675.16	ENSG00000129675.16	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LGSN	.	-/.	./.	chr6:63308024	KI270733.1:145500	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000146166.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565300	chr15:81565309	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
PCAT14(10850),AP000345.1(8417)	PCAT14(10912),AP000345.1(8355)	./.	./.	chr22:23558647	chr22:23558709	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MXD4	FP671120.4(1407),FP671120.10(6301)	-/.	./.	chr4:2261627	chr21:8229053	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000123933.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KRT18P49(15117),FRMPD3-AS1(68405)	KRT18P49(15163),FRMPD3-AS1(68359)	./.	./.	chrX:107444578	chrX:107444624	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(7)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785693	chr2:101785792	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	duplicates(1),low_entropy(35)	.	.	.
ARID4B	AC002463.1	-/.	+/.	chr1:235138608	chr7:112789954	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000054267.22	ENSG00000223646.2	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479908	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
AC105252.1(292284),AC079380.1(3754)	MAP1LC3BP1(11863),SLC24A2(31065)	./.	./.	chr4:133867492	chr9:19476387	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078771	chr1:225078870	intron	intron	duplication/ITD	0	0	0	19	28	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	same_gene	.	.	.
RNA5SP349(5010),SNORD39(137498)	AC121334.1(19777),AC121334.2(52459)	./.	./.	chr11:109125996	chr12:39487122	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC6A14	SLC6A14	+/.	+/.	chrX:116445491	chrX:116445508	intron	intron	duplication/ITD	0	0	0	0	687	low	.	.	.	.	.	ENSG00000268104.3	ENSG00000268104.3	.	.	upstream	downstream	duplicates(12),low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262499	chr6:42262508	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC00907(7810),RIT2(43995)	LINC00907(7870),RIT2(43935)	./.	./.	chr18:42699232	chr18:42699292	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GABPB2	CYP3A7	+/.	-/.	chr1:151087305	chr7:99706823	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000143458.12	ENSG00000160870.15	.	.	downstream	downstream	mismatches(1)	.	.	.
U6(246395),HSP90AB2P(35608)	TMCO3(3189),TFDP1(26942)	./.	./.	chr4:13297806	chr13:113557779	intergenic	intergenic	translocation	0	0	0	672	13	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SL824P(52808),GFI1(17550)	.	./.	./.	chr1:92455493	GL000220.1:130098	intergenic	intergenic	translocation	0	0	0	16	.	low	.	.	.	.	.	.	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193779	chr12:16193794	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
MARS1	FP236383.3	+/.	+/.	chr12:57488235	chr21:8394738	exon	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000166986.15	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LY6E(14635),C8orf31(742)	AP005436.1	./.	-/.	chr8:143038467	chr11:88092441	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	low_entropy	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36467018	chr20:36467033	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(2),low_entropy(6)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565300	chr15:81565309	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01791	TSHZ3	+/.	-/.	chr19:31183173	chr19:31183227	intron	intron	duplication/3'-3'	0	0	0	64	64	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000121297.8	.	.	upstream	downstream	duplicates(47),low_entropy(7)	.	.	.
PRRX1	PRRX1	+/.	+/.	chr1:170689815	chr1:170689875	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000116132.12	ENSG00000116132.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RMST	RMST	+/.	+/.	chr12:97463018	chr12:97463033	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000255794.9	ENSG00000255794.9	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565291	chr15:81565306	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565291	chr15:81565306	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(3)	.	.	.
SAPCD2P1(11260),ZNF735(12937)	NODAL(3407),PALD1(27409)	./.	./.	chr7:64194153	chr10:70451358	intergenic	intergenic	translocation	0	0	0	78	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15023),LRCH1(22187)	./.	./.	chr13:46530929	chr13:46530981	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(6)	.	.	.
AL450426.1(19778),OR13C8(12196)	FUT8	./.	+/.	chr9:104556972	chr14:65662720	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000033170.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565291	chr15:81565306	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785685	chr2:101785797	intron	intron	duplication	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
NUP54	SLC39A14	-/.	+/.	chr4:76125691	chr8:22396534	intron	intron	translocation/3'-3'	0	0	0	0	308	low	.	.	.	.	.	ENSG00000138750.15	ENSG00000104635.15	.	.	downstream	upstream	mismatches(1)	.	.	.
TYRO3(16298),AC016134.1(9570)	TYRO3(16366),AC016134.1(9502)	./.	./.	chr15:41599887	chr15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(2),merge_adjacent	.	.	.
AC087863.2	AC087863.2	-/.	-/.	chr12:118855023	chr12:118855038	intron	intron	duplication/ITD	0	0	0	39	0	low	.	.	.	.	.	ENSG00000256149.1	ENSG00000256149.1	.	.	upstream	downstream	duplicates(28),low_entropy(6)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683468	chr15:81683477	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC01198(14967),LRCH1(22243)	AC060809.1	./.	+/.	chr13:46530925	chr15:81565300	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824754	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419186	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	MECP2	+/.	-/.	chr2:32916556	chrX:154097335	intron	exon	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000169057.24	.	.	downstream	downstream	mismatches	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674821	chr5:20674830	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691781	intron	intron	duplication/ITD	0	0	0	31	22	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442046	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	GOLGA8F(6252),ABCB10P3(4598)	+/.	./.	chr2:32916556	chr15:28398270	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
TAPBPL	ACYP1	+/.	-/.	chr12:6451853	chr14:75068465	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000139192.12	ENSG00000119640.9	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC006458.1(129546),AGMO(2120)	AC006458.1(129604),AGMO(2062)	./.	./.	chr7:15198197	chr7:15198255	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
SAPCD2P1(11260),ZNF735(12937)	HIPK2	./.	-/.	chr7:64194153	chr7:139729323	intergenic	intron	inversion	0	0	0	78	31	low	.	.	.	.	.	.	ENSG00000064393.16	.	.	upstream	upstream	low_entropy	.	.	.
AC090630.1(2535),AC006197.2(16366)	AC090630.1(2550),AC006197.2(16351)	./.	./.	chr12:41935127	chr12:41935142	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308651	chr3:19308666	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(110),low_entropy(20)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AC116337.3	./.	-/.	chr1:188690471	chr5:75020588	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000249856.1	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NCAM1	NCAM1	+/.	+/.	chr11:113025779	chr11:113025794	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000149294.17	ENSG00000149294.17	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
RPL9P15(86809),AC073359.2(63088)	NTM	./.	+/.	chr3:154763928	chr11:131741209	intergenic	intron	translocation	0	0	0	3	6	low	.	.	.	.	.	.	ENSG00000182667.14	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736203	chr3:64736218	intron	intron	duplication/ITD	0	0	0	974	81	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(294),low_entropy(19)	.	.	.
TCF15(3584),SRXN1(32633)	FP236383.3	./.	+/.	chr20:613982	chr21:8442062	intergenic	intron	translocation	0	0	0	0	35	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HYI-AS1(4478),PTPRF(63714)	HYI-AS1(4529),PTPRF(63663)	./.	./.	chr1:43461473	chr1:43461524	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092723.3(36718),AC092723.2(3010)	AC092723.3(36733),AC092723.2(2995)	./.	./.	chr16:86032617	chr16:86032632	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
FYB2	FP236383.3	-/.	+/.	chr1:56742060	chr21:8441947	intron	intron	translocation	0	0	0	7	47	low	.	.	.	.	.	ENSG00000187889.13	ENSG00000280441.3	.	.	upstream	upstream	mismatches	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446343	chr12:50446352	intron	intron	duplication/ITD	0	0	0	86	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC079193.1(4367),ZDHHC2(1227)	NLGN4X	./.	-/.	chr8:17155255	chrX:6227403	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000146938.16	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021207	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(41)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661290	chr4:152661348	intron	intron	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	same_gene	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683455	chr15:81683470	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(74),low_entropy(27)	.	.	.
RN7SL299P(31898),SIPA1L2(142922)	AC034102.6	./.	-/.	chr1:232255043	chr12:56120983	intergenic	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000258317.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8444478	intron	intron	translocation	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
FYB2	.	-/.	./.	chr1:56742060	KI270733.1:176084	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000187889.13	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
SPIDR	SPIDR	+/.	+/.	chr8:47647617	chr8:47647662	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000164808.17	ENSG00000164808.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
GBP1P1	GBP1P1	+/.	+/.	chr1:89408645	chr1:89408689	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000225492.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
U3(136504),NXNP1(203197)	AC124947.1	./.	-/.	chr1:218678403	chr12:93375506	intergenic	intron	translocation	0	0	0	13	30	low	.	.	.	.	.	.	ENSG00000257252.6	.	.	upstream	upstream	mismatches(1)	.	.	.
AGAP2	INTS6P1(97297),GCSHP1(69766)	-/-	./-	chr12:57727485	chr5:39818810	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Putative_GTPase_activating_protein_for_Arf(47%),Ras_family(100%)|	.	.	ENSG00000135439.11	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479824	chr10:104479833	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
AC021146.5	FP236383.3	-/.	+/.	chr4:68986258	chr21:8397434	intron	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	ENSG00000249735.1	ENSG00000280441.3	.	.	upstream	upstream	mismatches(2)	.	.	.
RNU6-521P(183180),AC007274.3(50630)	RNU6-521P(183191),AC007274.3(50619)	./.	./.	chrY:7606338	chrY:7606349	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ECM2	AC010546.1(242411),AC040174.1(5669)	-/.	./.	chr9:92501706	chr16:63051117	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106823.12	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC020611.2	LINC02594	-/.	+/.	chr12:64071158	chr17:43679882	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255886.1	ENSG00000267440.2	.	.	downstream	upstream	mismatches(1)	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734429	chr6:46734438	intron	intron	duplication/ITD	0	0	0	49	46	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	low_entropy(3)	.	.	.
SUSD5(52300),FBXL2(5915)	AC093627.22	./.	-/.	chr3:33271110	chr7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287883.1	.	.	upstream	upstream	mismatches(2)	.	.	.
AC060809.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565294	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	downstream	low_entropy	.	.	.
AL627316.1	FP671120.4	-/.	+/.	chr1:90392796	chr21:8220959	intron	intron	translocation/5'-5'	0	0	0	326	13	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000278996.1	.	.	upstream	downstream	mismatches	.	.	.
AC025465.1	PTPRM	-/.	+/.	chr5:124505744	chr18:7802256	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000248296.1	ENSG00000173482.17	.	.	downstream	downstream	mismatches(1)	.	.	.
AC063979.1	AC063979.1	-/.	-/.	chr5:72720774	chr5:72720822	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000251613.4	ENSG00000251613.4	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479889	intergenic	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR31HG	MIR31HG	-/.	-/.	chr9:21483300	chr9:21483331	intron	intron	duplication/ITD	0	0	0	36	36	low	.	.	.	.	.	ENSG00000171889.5	ENSG00000171889.5	.	.	upstream	downstream	duplicates(24),low_entropy(6)	.	.	.
AC060809.1	SMURF2	+/.	-/.	chr15:81565292	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
PLCD4	PLCD4	+/.	+/.	chr2:218616922	chr2:218616986	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000115556.14	ENSG00000115556.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	SMURF2	+/.	-/.	chr15:81565294	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
AC025580.2	AC025580.2	+/.	+/.	chr15:45462075	chr15:45462162	intron	intron	duplication/ITD	0	0	0	0	4	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000259354.5	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
RSRC1	RSRC1	+/.	+/.	chr3:158106572	chr3:158106585	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000174891.13	ENSG00000174891.13	.	.	upstream	downstream	duplicates(14),low_entropy(9)	.	.	.
AC023034.1	SMURF2	+/.	-/.	chr15:81565292	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
YWHAQ	AC009835.1	-/-	-/+	chr2:9630456	chr18:32555379	5'UTR	intron	translocation/5'-5'	0	0	0	4	3	low	.	.	.	.	.	ENSG00000134308.14	ENSG00000287994.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	AC074387.1(61),RGPD5(32333)	+/.	./.	chr2:32916525	chr2:109760425	intron	intergenic	inversion	0	0	0	1632	4	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
FAM180A(13162),AC015987.1(12546)	CSF2RA	./.	+/.	chr7:135761975	chrX:1308605	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000198223.17	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU7-27P(2457),PRRT4(3726)	RNU7-27P(2472),PRRT4(3711)	./.	./.	chr7:128346599	chr7:128346614	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02714(167750),AP003062.2(13558)	IGH@-ext	./.	-/.	chr11:134931560	chr14:105867114	intergenic	exon	translocation	0	0	0	2	0	low	.	.	.	.	.	.	IGH.g@-ext	.	.	upstream	downstream	mismatches(1)	.	.	.
NRP1	AC084759.3(20),AC084759.2(31977)	-/.	./.	chr10:33334709	chr15:53914732	5'UTR	intergenic	translocation	0	0	0	15	1	low	.	.	.	.	.	ENSG00000099250.18	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269685	chr14:77269783	intron	intron	duplication/ITD	0	0	0	20	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(23),low_entropy(11)	.	.	.
LINC01198(14967),LRCH1(22243)	AC023034.1	./.	+/.	chr13:46530925	chr15:81565294	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
SLC39A14	TCF7L2	+/.	+/.	chr8:22396599	chr10:113117407	intron	intron	translocation/5'-5'	0	0	0	308	266	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
ROBO1	CDH13	-/.	+/.	chr3:79598015	chr16:83589275	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855.20	ENSG00000140945.17	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396543	chr8:22396554	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10906),AP000345.1(8361)	./.	./.	chr22:23558642	chr22:23558703	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(18),low_entropy(7)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092441	chr21:8220958	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
OLFM1	.	+/.	./.	chr9:135087395	KI270733.1:145955	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000130558.20	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01198(14967),LRCH1(22243)	AC023034.1	./.	+/.	chr13:46530925	chr15:81565296	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
DTX2	COL18A1	+/.	+/.	chr7:76496347	chr21:45478842	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000091073.19	ENSG00000182871.16	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565300	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
L29074.2	.	+/+	./+	chrX:147911827	GL000220.1:116388	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000274086.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC023034.1	USP9YP6	+/.	-/.	chr15:81565296	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
EML1	EML1	+/.	+/.	chr14:99796196	chr14:99796205	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(10)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785787	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
RAD23BP3(9948),USP25(23496)	PAXBP1(178),C21orf62-AS1(130)	./.	./.	chr21:15706529	chr21:32771970	intergenic	intergenic	duplication	0	0	0	0	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FREM2	MRPS18CP7(82694),RNA5SP505(51)	+/.	./.	chr13:38813554	chrX:53909003	intron	intergenic	translocation	0	0	0	2	3	low	.	.	.	.	.	ENSG00000150893.11	.	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138620	chrX:31138686	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NRIP3	AC022748.2	-/-	+/-	chr11:9003961	chr15:78672954	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	ENSG00000261303.6	.	.	upstream	downstream	mismatches(1)	.	.	.
TFPI(79911),LINC01090(67145)	ZNF267(33823),AC034105.5(980)	./.	./.	chr2:187645671	chr16:31951180	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479799	chr10:104479900	intron	intron	duplication	0	0	0	840	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
AC023034.1	SMURF2	+/.	-/.	chr15:81565296	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
ZNF462	AL133464.1(41588),LINC00261(34526)	+/.	./.	chr9:106864116	chr20:22513145	intron	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22749),NRXN3(87346)	./.	./.	chr14:78082946	chr14:78083027	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(7)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565294	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
DDB2	.	+/.	./.	chr11:47233103	GL000220.1:111487	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	duplicates(2)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565294	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
RUFY4(18122),CXCR2(16586)	5_8S_rRNA(2096),FP236383.3(121614)	./.	./.	chr2:218108703	chr21:8259029	intergenic	intergenic	translocation	0	0	0	125	35	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(9),homopolymer(2)	.	.	.
FXNP1(22673),NRXN3(87422)	FXNP1(22772),NRXN3(87323)	./.	./.	chr14:78082951	chr14:78083050	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262480	chr6:42262579	intron	intron	duplication/ITD	0	0	0	3576	3473	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(10)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458061	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PPP6C	SLC9A3R2	-/.	+/.	chr9:125167825	chr16:2027409	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000119414.12	ENSG00000065054.14	.	.	upstream	downstream	mismatches	.	.	.
PRDM1	FP236383.3	+/+	+/+	chr6:106098661	chr21:8442056	5'UTR	intron	translocation	0	0	0	0	2539	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01198(14967),LRCH1(22243)	AC060809.1	./.	+/.	chr13:46530925	chr15:81565298	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
FP236383.3	.	+/.	./.	chr21:8443901	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021214	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(9),low_entropy(1),merge_adjacent	.	.	.
AL358053.1(206722),AL591644.1(220959)	MIR4300HG	./.	-/.	chr9:1756825	chr11:82143130	intergenic	intron	translocation	0	0	0	40	748	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	ABCG1	+/.	+/.	chr2:32916525	chr21:42219230	intron	5'UTR	translocation	0	0	0	1632	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000160179.19	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916400	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
ZNF780A	.	-/.	./.	chr19:40090468	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197782.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
WBP1LP4(21962),RPL23AP45(70963)	ZBTB44	./.	-/.	chr5:181401000	chr11:130314625	intergenic	5'UTR	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000196323.14	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262469	chr6:42262485	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EML1	EML1	+/.	+/.	chr14:99796194	chr14:99796203	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(15)	.	.	.
NAALADL2	SAPCD2P1(11260),ZNF735(12937)	+/.	./.	chr3:175504623	chr7:64194153	intron	intergenic	translocation	0	0	0	4	78	low	.	.	.	.	.	ENSG00000177694.16	.	.	.	downstream	upstream	low_entropy	.	.	.
AC060809.1	SMURF2	+/.	-/.	chr15:81565300	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916403	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
AC023034.1	SMURF2	+/.	-/.	chr15:81565300	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8403226	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565296	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	chr2:237784949	chr15:45462430	intron	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	ENSG00000124831.19	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC079906.1(69709),AMIGO2(33843)	AC079906.1(69724),AMIGO2(33828)	./.	./.	chr12:47041864	chr12:47041879	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC026782.1(30371),AC026782.2(10095)	AP001823.1(3458),ELMOD1(730)	./.	./.	chr5:82576681	chr11:107590361	intergenic	intergenic	translocation	0	0	0	0	685	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046186	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(3)	.	.	.
DTNBP1(65875),ARPC3P5(205849)	TCF7L2	./.	+/.	chr6:15728933	chr10:113117379	intergenic	intron	translocation	0	0	0	654	266	low	.	.	.	.	.	.	ENSG00000148737.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LDB2(152),AC106894.1(74445)	LDB2(225),AC106894.1(74372)	./.	./.	chr4:16898830	chr4:16898903	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	AL031073.2(184997),SPANXN4(100340)	+/.	./.	chr2:32916556	chrX:142925578	intron	intergenic	translocation	0	0	0	1606	12	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:116384	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
ABR	AC006277.1(26610),TLE6(284)	-/.	./.	chr17:1012639	chr19:2977254	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159842.15	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC009720.1(17438),PICART1(16067)	AC009720.1(17453),PICART1(16052)	./.	./.	chr17:50034282	chr17:50034297	intergenic	intergenic	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ADAMTS9-AS2	BMPR1B	+/.	+/.	chr3:64736203	chr4:94902256	intron	intron	translocation/3'-3'	0	0	0	974	1847	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000138696.11	.	.	upstream	upstream	duplicates(22),mismatches(1)	.	.	.
AC060809.1	USP9YP6	+/.	-/.	chr15:81565302	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
USP6	USP6	+/.	+/.	chr17:5158573	chr17:5158672	intron	intron	duplication/ITD	0	0	0	25	27	low	.	.	.	.	.	ENSG00000129204.17	ENSG00000129204.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092445.1	AC092445.1	+/.	+/.	chr4:106876616	chr4:106876631	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000286147.1	ENSG00000286147.1	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
KRCC1	ERAL1	-/.	+/.	chr2:88055890	chr17:28859771	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000172086.9	ENSG00000132591.12	.	.	downstream	downstream	mismatches(1)	.	.	.
AL033504.1	AL033504.1	+/.	+/.	chr6:147790733	chr6:147790827	intron	intron	duplication/ITD	0	0	0	14	23	low	.	.	.	.	.	ENSG00000227681.5	ENSG00000227681.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
VPS54(36311),AC012368.2(30614)	IQCM	./.	-/.	chr2:64055739	chr4:149806554	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000234828.9	.	.	upstream	downstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902258	chr4:94902267	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(4)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392804	chr1:90392813	intron	intron	duplication/ITD	0	0	0	334	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824767	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683460	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3425),ELMOD1(763)	BECN1	./.	-/.	chr11:107590328	chr17:42832749	intergenic	intron	translocation	0	0	0	683	0	low	.	.	.	.	.	.	ENSG00000126581.13	.	.	upstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046186	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(3)	.	.	.
USH2A	Y_RNA(76125),NECTIN3-AS1(85138)	-/.	./.	chr1:216352104	chr3:110803246	intron	intergenic	translocation	0	0	0	6	1	low	.	.	.	.	.	ENSG00000042781.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
C12orf45	FXNP1(22749),NRXN3(87346)	+/.	./.	chr12:105046194	chr14:78083027	intron	intergenic	translocation	0	0	0	1664	671	low	.	.	.	.	.	ENSG00000151131.11	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2FP2(4909),AC138305.1(128284)	USP9YP6	./.	-/.	chr16:63185980	chrY:17913613	intergenic	intron	translocation	0	0	0	35	31	low	.	.	.	.	.	.	ENSG00000226116.1	.	.	downstream	downstream	low_entropy	.	.	.
LY6E(14625),C8orf31(752)	LINC02620	./.	-/.	chr8:143038457	chr10:104479898	intergenic	intron	translocation	0	0	0	171	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
ATP2B2	ABCC8	-/-	-/-	chr3:10449762	chr11:17476060	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|ABC_transporter(100%),ABC_transporter_transmembrane_region(100%)	.	.	ENSG00000157087.20	ENSG00000006071.15	.	.	upstream	downstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046187	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(15)	.	.	.
AC016304.1(54229),TMCO5A(376607)	SLC9A5	./.	+/.	chr15:37545332	chr16:67248963	intergenic	5'UTR	translocation	0	0	0	25	0	low	.	.	.	.	.	.	ENSG00000135740.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025465.1	CHST11	-/.	+/.	chr5:124505746	chr12:104752788	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000248296.1	ENSG00000171310.11	.	.	downstream	downstream	mismatches(1)	.	.	.
BAIAP2L1(188),PPIAP82(52841)	FP236383.3	./.	+/.	chr7:98401278	chr21:8397826	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
MAD1L1	FP671120.4(1407),FP671120.10(6301)	-/.	./.	chr7:1966818	chr21:8229053	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000002822.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	SSPOP	./.	+/.	chr2:218108703	chr7:149787750	intergenic	exon	translocation	0	0	0	125	0	low	.	.	.	.	.	.	ENSG00000197558.13	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
AL033530.1(17845),AL691520.1(12713)	BOP1	./.	-/.	chr1:68961297	chr8:144266400	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000261236.8	.	.	downstream	downstream	mismatches	.	.	.
SEPTIN8	SEPTIN8	-/.	-/.	chr5:132788162	chr5:132788228	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000164402.14	ENSG00000164402.14	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF780A	5_8S_rRNA(2088),FP236383.3(121622)	-/.	./.	chr19:40090468	chr21:8259021	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000197782.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GABRA2	GABRA2	-/-	-/-	chr4:46389849	chr4:46389862	5'UTR	5'UTR	duplication/ITD	0	0	0	0	13	low	.	.	|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)	.	.	ENSG00000151834.16	ENSG00000151834.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
OSBP2	OSBP2	+/.	+/.	chr22:30730717	chr22:30730730	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000184792.16	ENSG00000184792.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479811	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565302	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
WDFY3	AL050402.1(52853),AL133456.1(50926)	-/.	./.	chr4:84695553	chr22:27512913	intron	intergenic	translocation	0	0	0	10	1	low	.	.	.	.	.	ENSG00000163625.16	.	.	.	downstream	downstream	duplicates(1)	.	.	.
WDPCP	METTL15	-/.	+/.	chr2:63629792	chr11:28310969	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000143951.16	ENSG00000169519.21	.	.	downstream	downstream	mismatches(1)	.	.	.
F13A1	MTUS2	-/.	+/.	chr6:6178039	chr13:28894314	intron	intron	translocation/5'-5'	0	0	0	1	9	low	.	.	.	.	.	ENSG00000124491.16	ENSG00000132938.22	.	.	upstream	downstream	mismatches	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565302	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
MIR4300HG	NTM	-/.	+/.	chr11:82143174	chr11:132278770	intron	intron	inversion	0	0	0	719	2	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000182667.14	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143103	chr11:82143112	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
UVSSA	FP236383.11(2061),FP236383.6(395)	+/.	./.	chr4:1346670	chr21:8464859	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565302	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
AC009720.1(17444),PICART1(16061)	AC009720.1(17453),PICART1(16052)	./.	./.	chr17:50034288	chr17:50034297	intergenic	intergenic	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MFF-DT	5_8S_rRNA(2077),FP236383.3(121633)	-/-	./+	chr2:227268528	chr21:8259010	exon	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
CLIC5	NCOA5LP(16498),CNEP1R1(39182)	-/.	./.	chr6:45974529	chr16:49985228	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000112782.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479803	chr10:104479890	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CANT1	.	-/-	./+	chr17:78995148	GL000220.1:114247	CDS	intergenic	translocation	0	0	0	8	.	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
PPP1R3D	PTGER3	-/-	-/-	chr20:59936654	chr1:71047771	intergenic	5'UTR	translocation	0	0	0	4	0	low	.	.	Carbohydrate/starch-binding_module_(family_21)(100%)|7_transmembrane_receptor_(rhodopsin_family)(100%)	.	.	ENSG00000132825.7	ENSG00000050628.20	.	.	upstream	downstream	mismatches(1)	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824762	chr3:64736203	5'UTR	intron	translocation	0	0	0	144	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419194	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916547	chr21:8442048	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
EML1	EML1	+/.	+/.	chr14:99796189	chr14:99796202	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(18),merge_adjacent	.	.	.
RNU6-976P(48263),AL163642.1(162959)	RNU6-976P(48276),AL163642.1(162946)	./.	./.	chr14:84788315	chr14:84788328	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702339	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79731),AC016903.1(10553)	./.	./.	chr2:204459485	chr2:204459523	intergenic	intergenic	duplication/ITD	0	0	0	60	60	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060809.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565292	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	downstream	low_entropy	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336207	intron	intron	duplication/ITD	0	0	0	36	32	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
5_8S_rRNA(2088),FP236383.3(121622)	MICAL3	./.	-/.	chr21:8259021	chr22:17796203	intergenic	intron	translocation	0	0	0	35	0	low	.	.	.	.	.	.	ENSG00000243156.9	.	.	upstream	upstream	mismatches(1)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9783),AC108063.2(20072)	./.	./.	chr4:16094104	chr4:16094161	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
TBX2-AS1	TBX2-AS1	-/.	-/.	chr17:61402925	chr17:61402971	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000267280.5	ENSG00000267280.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392889	chr10:104479898	intron	intron	translocation/3'-3'	0	0	0	334	988	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
5_8S_rRNA(2088),FP236383.3(121622)	AC016026.1	./.	-/.	chr21:8259021	chr22:17796203	intergenic	intron	translocation	0	0	0	35	0	low	.	.	.	.	.	.	ENSG00000093100.13	.	.	upstream	upstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269680	chr14:77269778	intron	intron	duplication/ITD	0	0	0	11	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
PLA2G7	MORC4	-/.	-/.	chr6:46734433	chrX:106941412	intron	3'UTR	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
ESR1	ESR1	+/.	+/.	chr6:151669146	chr6:151669188	intron	intron	duplication/ITD	0	0	0	126	126	low	.	.	.	.	.	ENSG00000091831.24	ENSG00000091831.24	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
TPTE2P1(13480),RPL34P27(6610)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	chr13:24981967	chr21:8259021	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DGKI	.	-/.	./.	chr7:137711022	KI270733.1:125835	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000157680.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
GRAMD1B	GRAMD1B	+/+	+/+	chr11:123625952	chr11:123625937	3'UTR	3'UTR	duplication/ITD	0	0	0	7	7	low	.	.	GRAM_domain(100%),VAD1_Analog_of_StAR-related_lipid_transfer_domain(100%)|	.	.	ENSG00000023171.18	ENSG00000023171.18	.	.	downstream	upstream	duplicates(2),low_entropy(3)	.	.	.
LINC00486	RGPD5	+/.	+/.	chr2:32916525	chr2:109794609	intron	intron	inversion/3'-3'	0	0	0	1632	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000015568.13	.	.	downstream	downstream	mismatches	.	.	.
LIN52(32940),VSX2(5274)	GSE1	./.	+/.	chr14:74234175	chr16:85627990	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	downstream	upstream	mismatches(2)	.	.	.
AP001823.1(3425),ELMOD1(763)	AP001823.1(3444),ELMOD1(744)	./.	./.	chr11:107590328	chr11:107590347	intergenic	intergenic	duplication/ITD	0	0	0	683	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442045	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683523	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
RUFY4(18122),CXCR2(16586)	FP671120.4	./.	+/.	chr2:218108703	chr21:8214800	intergenic	intron	translocation	0	0	0	125	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	duplicates(9),homopolymer(2)	.	.	.
WDR62(1882),OVOL3(4161)	FP236383.3	./.	+/.	chr19:36106990	chr21:8398074	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
MICAL3	.	-/.	./.	chr22:17796203	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000243156.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TIMP3	TIMP3	+/.	+/.	chr22:32814142	chr22:32814155	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000100234.12	ENSG00000100234.12	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
MED15P4(5303),AC093838.1(12716)	CMAHP	./.	-/.	chr2:131542291	chr6:25343856	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000168405.17	.	.	upstream	downstream	homopolymer(1)	.	.	.
FP236383.3	MICAL3	+/.	-/.	chr21:8397826	chr22:17796203	intron	intron	translocation	0	0	0	450	0	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000243156.9	.	.	upstream	upstream	mismatches(1)	.	.	.
AC117522.1(114766),AC010486.1(67188)	LINC02620	./.	-/.	chr5:85352840	chr10:104479907	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AC005102.1	AC105180.2(10848),ZFAT(76453)	+/+	./-	chr7:75835843	chr8:134401335	exon	intergenic	translocation	0	0	0	0	120	low	.	.	.	.	.	ENSG00000219039.2	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC066580.1(39437),HRH1(6108)	TCF7L2	./.	+/.	chr3:11130985	chr10:113117433	intergenic	intron	translocation	0	0	0	0	266	low	.	.	.	.	.	.	ENSG00000148737.17	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419192	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824756	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479799	chr10:104479896	intron	intron	duplication/ITD	0	0	0	840	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
USP9YP6	USP9YP6	-/.	-/.	chrY:17913524	chrY:17913589	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000226116.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF780A	FP236383.3	-/.	+/.	chr19:40090468	chr21:8397826	intron	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	ENSG00000197782.14	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479891	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
AC023034.1	SMURF2	+/.	-/.	chr15:81565302	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916405	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
TPTE2P1(13480),RPL34P27(6610)	.	./.	./.	chr13:24981967	GL000220.1:114258	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
U95743.1(127345),ERCC4(13049)	.	./.	./.	chr16:13907105	GL000220.1:159074	intergenic	intergenic	translocation	0	0	0	10	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02620	CHST11	-/.	+/.	chr10:104479817	chr12:104706484	intron	intron	translocation/5'-5'	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000171310.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392888	chr11:88092435	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	low_entropy	.	.	.
ALG14(42804),TLCD4(1600)	5_8S_rRNA(2081),FP236383.3(121629)	./.	./.	chr1:95115755	chr21:8259014	intergenic	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	SMAGP	-/.	-/.	chr11:3702363	chr12:51248435	intron	intron	translocation	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000170545.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LY6E(14635),C8orf31(742)	AP005436.1	./.	-/.	chr8:143038467	chr11:88092435	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	low_entropy	.	.	.
AADACL3(16815),C1orf158(625)	GRIK1	./.	-/.	chr1:12745575	chr21:29740627	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000171189.17	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	MICAL3	+/.	-/.	chr21:8214792	chr22:17796203	intron	intron	translocation	0	0	0	2358	0	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000243156.9	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312080	chr11:22312093	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	duplicates(20),low_entropy(12)	.	.	.
LINC00624(23210),BCL9(416)	LINC00624(23302),BCL9(324)	./.	./.	chr1:147541085	chr1:147541177	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114153	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
TPTE2P1(13480),RPL34P27(6610)	FP236383.3	./.	+/.	chr13:24981967	chr21:8442056	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138634	chrX:31138643	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC087373.1(316543),RPL36AP40(130909)	AC087373.1(316558),RPL36AP40(130894)	./.	./.	chr11:25457566	chr11:25457581	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNAH14	FXNP1(22774),NRXN3(87321)	+/.	./.	chr1:225078844	chr14:78083052	intron	intergenic	translocation	0	0	0	27	640	low	.	.	.	.	.	ENSG00000185842.15	.	.	.	downstream	downstream	low_entropy	.	.	.
FGF18(88920),AC022440.1(178029)	AL136418.1	./.	+/.	chr5:171546546	chr14:31265979	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000257831.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001652.1	.	-/.	./.	chr11:58919736	KI270733.1:176185	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000255523.1	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565300	chr15:81565309	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
CSMD2	INPP5D	-/-	+/-	chr1:33557742	chr2:233117636	CDS	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	CUB_domain(100%),Sushi_repeat_(SCR_repeat)(70%)|	.	.	ENSG00000121904.17	ENSG00000168918.14	.	.	upstream	downstream	mismatches(1)	.	.	.
EYA1	EYA1	-/.	-/.	chr8:71463569	chr8:71463629	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000104313.20	ENSG00000104313.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736258	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484566	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	chr7:76580348	chr7:76580412	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000205485.13	ENSG00000205485.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NRIP3	AC025366.1(57833),AP005357.1(76636)	-/-	./+	chr11:9003961	chr8:110690227	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFTR	SRGAP1	+/.	+/.	chr7:117448925	chr12:64071158	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000001626.16	ENSG00000196935.9	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106231139	chr14:106231148	exon	exon	duplication/3'-3'	0	0	0	8	7	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
RGS12	MRC2	+/+	+/-	chr4:3386020	chr17:62689981	exon	CDS	translocation/5'-5'	0	0	0	0	9	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	ENSG00000011028.14	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AGAP14P(7012),FAM25BP(3387)	LINC02620	./.	-/.	chr10:46365726	chr10:104479813	intergenic	intron	deletion	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193841	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(8),merge_adjacent	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479897	intron	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
EPHA8	.	+/.	./.	chr1:22588283	KI270733.1:176084	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000070886.12	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
EDIL3	EDIL3	-/.	-/.	chr5:84371451	chr5:84371464	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000164176.13	ENSG00000164176.13	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
FOSL2	AC102941.2(4644),AC022613.1(864)	+/.	./.	chr2:28394136	chr15:29674126	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000075426.12	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	AC018678.1(113169),RNU6-692P(143126)	+/.	./.	chr2:32916569	chr2:147265216	intron	intergenic	deletion	0	0	0	1588	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
AL359710.1	AL050402.1(52857),AL133456.1(50922)	-/.	./.	chr9:99614512	chr22:27512917	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000237461.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916400	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
AL355674.1(96150),RORB-AS1(4823)	AL355674.1(96210),RORB-AS1(4763)	./.	./.	chr9:74480728	chr9:74480788	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143162	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	chr3:96618112	chr21:8216865	5'UTR	intron	translocation/3'-3'	0	0	0	11	5	low	.	.	.	.	.	ENSG00000269028.3	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
BMS1P21(4198),MBL1P(8124)	BMS1P21(4250),MBL1P(8072)	./.	./.	chr10:79912054	chr10:79912106	intergenic	intergenic	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SFN(3791),GPN2(7885)	SFN(3849),GPN2(7827)	./.	./.	chr1:26868247	chr1:26868305	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702316	chr11:3702327	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(10),merge_adjacent	.	.	.
GPRIN1(8931),SNCB(995)	ADNP	./.	-/.	chr5:176619087	chr20:50931009	intergenic	5'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000101126.18	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661285	chr4:152661294	intron	intron	duplication/ITD	0	0	0	99	10	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	duplicates(50),low_entropy(9)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5435),ZNF669(8460)	./.	./.	chr1:247091449	chr1:247091502	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
AC073409.1(238166),ELOAP1(12691)	AC073409.1(238236),ELOAP1(12621)	./.	./.	chr2:123682611	chr2:123682681	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419120	chr14:106419207	exon	exon	duplication/5'-5'	0	0	0	71	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
THEMIS	THEMIS	-/.	-/.	chr6:127729137	chr6:127729203	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000172673.11	ENSG00000172673.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
EML1	EML1	+/.	+/.	chr14:99796186	chr14:99796201	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(20),low_entropy(1),merge_adjacent	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520835	chr7:30520910	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	duplicates(1)	.	.	.
C1orf194	CFAP58	-/.	+/.	chr1:109113427	chr10:104396370	intron	intron	translocation/3'-3'	0	0	0	8	217	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262482	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5443),ZNF669(8452)	./.	./.	chr1:247091449	chr1:247091510	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),low_entropy(3)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565304	chr15:81565313	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9779),AC108063.2(20076)	./.	./.	chr4:16094104	chr4:16094157	intergenic	intergenic	duplication/ITD	0	0	0	54	54	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479898	intergenic	intron	translocation	0	0	0	171	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
RN7SL824P(52804),GFI1(17554)	RN7SL824P(52813),GFI1(17545)	./.	./.	chr1:92455489	chr1:92455498	intergenic	intergenic	duplication/ITD	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
AC073346.1(93706),AC073137.1(175653)	AC073346.1(93721),AC073137.1(175638)	./.	./.	chr7:113240036	chr7:113240051	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC090506.2(91636),AC016382.1(82760)	AC090506.2(91661),AC016382.1(82735)	./.	./.	chr18:30872060	chr18:30872085	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(2)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092322	chr11:88092418	intron	intron	duplication/ITD	0	0	0	783	847	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565345	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(3)	.	.	.
COMETT	AC023034.1	-/.	+/.	chr7:116638129	chr15:81565294	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259594.6	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262492	chr6:42262501	intron	intron	duplication/ITD	0	0	0	3756	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
NUP98	DAZAP2	-/.	+/.	chr11:3702365	chr12:51248435	intron	intron	translocation/3'-3'	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000183283.16	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LIPA	LIPA	-/.	-/.	chr10:89293680	chr10:89293715	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000107798.18	ENSG00000107798.18	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
AP001823.1(3430),ELMOD1(758)	AP001823.1(3510),ELMOD1(678)	./.	./.	chr11:107590333	chr11:107590413	intergenic	intergenic	duplication/ITD	0	0	0	683	685	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DMD	DMD	-/.	-/.	chrX:31943872	chrX:31943887	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SALL2	AC010641.1(5541),C2CD4C(731)	-/.	./.	chr14:21526051	chr19:404714	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000165821.12	.	.	.	downstream	downstream	low_entropy(1)	.	.	.
AC121758.2	AC121758.2	+/.	+/.	chr12:56869709	chr12:56869757	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000258679.1	ENSG00000258679.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096623	chr2:141096682	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824762	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(3),low_entropy(1)	.	.	.
AC114477.1(10760),RANP7(81328)	FP236383.3	./.	+/.	chr3:22822807	chr21:8442305	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM83B	5_8S_rRNA(2094),FP236383.3(121616)	+/.	./.	chr6:54859661	chr21:8259027	intron	intergenic	translocation	0	0	0	3	35	low	.	.	.	.	.	ENSG00000168143.9	.	.	.	downstream	upstream	duplicates(5),mismatches(2)	.	.	.
PLD5(20076),AC099785.1(126367)	PLD5(20089),AC099785.1(126354)	./.	./.	chr1:242544773	chr1:242544786	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PTPRG	ZIC1	+/.	+/.	chr3:61563137	chr3:147473053	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144724.20	ENSG00000152977.10	.	.	downstream	downstream	mismatches(1)	.	.	.
TAPBPL	IQCH-AS1	+/.	-/.	chr12:6451853	chr15:67307531	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139192.12	ENSG00000259673.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CYP2A13	CYP2A13	+/.	+/.	chr19:41089816	chr19:41089825	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000197838.5	ENSG00000197838.5	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
LINC01495	PHACTR3	-/.	+/.	chr11:22480925	chr20:59743988	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255323.6	ENSG00000087495.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009720.1(17437),PICART1(16068)	AC009720.1(17452),PICART1(16053)	./.	./.	chr17:50034281	chr17:50034296	intergenic	intergenic	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
CYP2A13	CYP2A13	+/.	+/.	chr19:41089818	chr19:41089827	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000197838.5	ENSG00000197838.5	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.3	./.	+/.	chr20:20367921	chr21:8420130	intergenic	intron	translocation	0	0	0	28	0	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419182	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
SMAGP	DAZAP2	-/.	+/.	chr12:51248435	chr12:51248448	intron	intron	duplication/5'-5'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000170545.17	ENSG00000183283.16	.	.	upstream	downstream	duplicates(13),low_entropy(1)	.	.	.
POU4F1	AC025039.1(485228),MIR3924(223220)	-/-	./+	chr13:78601938	chr10:57081259	CDS	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000152192.8	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GALNT9	ANKRD11	-/.	-/.	chr12:132216846	chr16:89379092	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000182870.13	ENSG00000167522.16	.	.	downstream	downstream	mismatches(1)	.	.	.
MAOB	MAOB	-/.	-/.	chrX:43857117	chrX:43857132	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000069535.14	ENSG00000069535.14	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
NR5A1	FP236383.3	-/-	+/+	chr9:124507406	chr21:8390947	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC068481.1	NRG3	-/.	+/.	chr2:7068603	chr10:82450837	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000223884.7	ENSG00000185737.13	.	.	downstream	upstream	mismatches(1)	.	.	.
C9orf92	C9orf92	-/.	-/.	chr9:16359305	chr9:16359318	intron	intron	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	ENSG00000205549.10	ENSG00000205549.10	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
NUP98	DAZAP2	-/.	+/.	chr11:3702361	chr12:51248435	intron	intron	translocation/3'-3'	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000183283.16	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RABGAP1L	LDB2(223),AC106894.1(74374)	+/.	./.	chr1:174866099	chr4:16898901	intron	intergenic	translocation	0	0	0	9	83	low	.	.	.	.	.	ENSG00000152061.23	.	.	.	upstream	downstream	low_entropy	.	.	.
SEMA5B(2018),PDIA5(36402)	SEMA5B(2033),PDIA5(36387)	./.	./.	chr3:123030623	chr3:123030638	intergenic	intergenic	duplication/ITD	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(63),low_entropy(14)	.	.	.
AC068481.1	AC116362.1	-/.	-/.	chr2:7068603	chr5:125685916	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000223884.7	ENSG00000248752.3	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00364(169407),AL512452.1(28223)	SEC1P	./.	+/.	chr13:67549401	chr19:48668651	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000232871.8	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670918	chr2:23670931	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670919	chr2:23670934	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
WWC2	GALNT9	+/.	-/.	chr4:183257895	chr12:132296824	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151718.16	ENSG00000182870.13	.	.	upstream	upstream	mismatches(1)	.	.	.
MEIS2	MEIS2	-/-	-/-	chr15:37098380	chr15:37098393	exon	exon	duplication/ITD	0	0	0	3	3	low	.	.	|Homeobox_KN_domain(100%),N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)	.	.	ENSG00000134138.20	ENSG00000134138.20	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC007128.2(92198),NXPH1(68)	FP671120.4	./.	+/.	chr7:8433541	chr21:8209535	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419212	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
DTNBP1(65875),ARPC3P5(205849)	DTNBP1(65890),ARPC3P5(205834)	./.	./.	chr6:15728933	chr6:15728948	intergenic	intergenic	duplication/ITD	0	0	0	654	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(324),low_entropy(12)	.	.	.
LINC02864	.	-/.	./.	chr18:73168245	KI270733.1:130712	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263711.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC132217.2	.	-/.	./.	chr11:2138068	KI270733.1:130988	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000284779.2	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ADAMTS9-AS2	BMPR1B	+/.	+/.	chr3:64736203	chr4:94902252	intron	intron	translocation/3'-3'	0	0	0	974	1847	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000138696.11	.	.	upstream	upstream	duplicates(21),mismatches(2)	.	.	.
IQSEC1(581),NUP210(32373)	B3GNTL1	./.	-/.	chr3:13283862	chr17:83051697	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000175711.8	.	.	downstream	upstream	mismatches(1)	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15850),IL2RB(280)	./.	./.	chr22:37125511	chr22:37125563	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(5)	.	.	.
AC233701.1(7246),MIR4739(96009)	GPC3	./.	-/.	chr17:79611167	chrX:133661568	intergenic	intron	translocation	0	0	0	91	195	low	.	.	.	.	.	.	ENSG00000147257.15	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FMR1-AS1	+/.	-/.	chr21:8444186	chrX:147911827	intron	intergenic	translocation/3'-3'	0	0	0	765	0	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000268066.5	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID2	ACTN4	+/.	+/.	chr12:45868483	chr19:38666177	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000189079.17	ENSG00000130402.13	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661561	chrX:133661634	intron	intron	duplication/ITD	0	0	0	195	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(3),low_entropy(8)	.	.	.
AF121898.1	SLC6A14	-/.	+/.	chr8:87586926	chrX:116445508	intron	intron	translocation/5'-5'	0	0	0	1	687	low	.	.	.	.	.	ENSG00000253500.6	ENSG00000268104.3	.	.	upstream	downstream	mismatches(1)	.	.	.
MARCHF3	FP236383.3	-/.	+/.	chr5:126930649	chr21:8442064	intron	intron	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000173926.6	ENSG00000280441.3	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP671120.4	FMR1-AS1	+/.	-/.	chr21:8216918	chrX:147911828	intron	intergenic	translocation/3'-3'	0	0	0	603	0	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000268066.5	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025470.2	FP236383.3	+/.	+/.	chr5:57533339	chr21:8442056	exon	intron	translocation/3'-3'	0	0	0	6	2539	low	.	.	.	.	.	ENSG00000250961.2	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AL391645.1(104895),LINC01720(25698)	CD46P1	./.	+/.	chr1:190599192	chr1:207645399	intergenic	intron	deletion	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000244703.3	.	.	downstream	upstream	mismatches(1)	.	.	.
MICC(20674),AL662873.1(11146)	LINC02620	./.	-/.	chr6:30439993	chr10:104479810	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
FMR1-AS1	.	-/.	./.	chrX:147911828	KI270733.1:133244	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000268066.5	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ASB3	ASB3	-/.	-/.	chr2:53594552	chr2:53594599	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000115239.24	ENSG00000115239.24	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01278	.	-/.	./.	chrX:63433600	GL000220.1:158121	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000235437.8	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
IL15(110186),INPP4B(178987)	.	./.	./.	chr4:141844173	KI270733.1:176183	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392889	chr10:104479900	intron	intron	translocation/3'-3'	0	0	0	334	988	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
L29074.2	.	+/+	./+	chrX:147911828	KI270733.1:133244	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000274086.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NTNG2	AC140658.1	+/.	-/.	chr9:132201072	chr16:33966943	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000196358.11	ENSG00000205452.5	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262483	chr6:42262582	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280000	chr1:148280087	intron	intron	duplication/ITD	0	0	0	40	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
KDM4B	AC119396.1	+/.	-/.	chr19:5090367	chr19:7394968	intron	intron	duplication/3'-3'	0	1	0	19	1	low	.	.	.	.	.	ENSG00000127663.15	ENSG00000267852.1	.	.	upstream	downstream	min_support	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521065	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	low_entropy(4)	.	.	.
IGSF9B	FP671120.4	-/.	+/.	chr11:133918828	chr21:8216986	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000080854.16	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
FMR1-AS1	.	-/.	./.	chrX:147911828	KI270733.1:178323	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000268066.5	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
PRTFDC1	AP001372.2	-/.	+/.	chr10:24867061	chr11:74493723	intron	exon	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000099256.19	ENSG00000254837.2	.	.	downstream	upstream	mismatches(1)	.	.	.
CAPN8(15259),RNU6-1248P(9069)	GALNTL6	./.	+/.	chr1:223680982	chr4:172017786	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000174473.16	.	.	upstream	upstream	mismatches(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11817321	chr21:8399951	intron	intron	translocation/3'-3'	0	0	0	5	729	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
NTM	DIO2-AS1	+/.	+/.	chr11:131741209	chr14:80410538	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000182667.14	ENSG00000258766.1	.	.	downstream	downstream	mismatches(1)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	GL000220.1:131578	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC132217.2	.	-/.	./.	chr11:2138068	GL000220.1:158104	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000284779.2	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
GALNTL6	AL390198.1(6980),FAM182B(2628)	+/.	./.	chr4:172017786	chr20:25759756	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174473.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397818	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
MT-RNR2	.	+/.	./.	chrM:1791	GL000220.1:113865	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GALNTL6	AC243725.1(67647),ABBA01006766.1(205475)	+/.	./.	chr4:172017786	chr17:21851112	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174473.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NLGN4X	NLGN4X	-/.	-/.	chrX:5921399	chrX:5921408	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000146938.16	ENSG00000146938.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10898),AP000345.1(8369)	./.	./.	chr22:23558642	chr22:23558695	intergenic	intergenic	duplication/ITD	0	0	0	140	140	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479799	chr11:88092439	intron	intron	translocation	0	0	0	840	838	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	FMN1	+/.	-/.	chr2:32916556	chr15:32804457	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000248905.10	.	.	downstream	downstream	mismatches	.	.	.
PRDM14	KIAA1549L	-/.	+/.	chr8:70069949	chr11:33557935	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000147596.4	ENSG00000110427.17	.	.	downstream	downstream	mismatches(1)	.	.	.
IGF2	FP236383.3	-/.	+/.	chr11:2138068	chr21:8441930	intron	intron	translocation/5'-5'	0	0	0	0	46	low	.	.	.	.	.	ENSG00000167244.21	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC113167.1	AC113167.1	+/.	+/.	chr5:89978892	chr5:89978905	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000214942.6	ENSG00000214942.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442051	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683456	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SFRP1(2483),SNORD65B(114699)	SQSTM1P1(123822),AL445668.1(8613)	./.	./.	chr8:41311956	chr13:62530738	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IGF2	FP236383.3	-/.	+/.	chr11:2138067	chr21:8392571	intron	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000167244.21	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
PLEKHG1	PLEKHG1	+/.	+/.	chr6:150674639	chr6:150674648	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000120278.16	ENSG00000120278.16	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TRAPPC9	JPH2	-/.	-/.	chr8:140110809	chr20:44130357	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167632.18	ENSG00000149596.7	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702323	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(36),low_entropy(1),merge_adjacent	.	.	.
LY6E(14631),C8orf31(746)	AP005436.1	./.	-/.	chr8:143038463	chr11:88092445	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
ELF2P4(68196),FSIP2-AS1(36360)	FXNP1(22771),NRXN3(87324)	./.	./.	chr2:185616014	chr14:78083049	intergenic	intergenic	translocation	0	0	0	2	640	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM207BP(9507),GXYLT1P1(17401)	FAM207BP(9559),GXYLT1P1(17349)	./.	./.	chr13:18707014	chr13:18707066	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC02330	FBXO28	-/-	+/+	chr14:87635507	chr1:224122600	exon	intron	translocation	0	0	0	0	6	low	.	.	|F-box_domain(14%)	.	.	ENSG00000258770.1	ENSG00000143756.12	.	.	upstream	upstream	mismatches(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261462	chr1:162261547	intron	intron	duplication/ITD	0	0	0	59	49	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(21),low_entropy(2)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679817	chr21:39679826	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117374	chr10:113117382	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MRPS28	MRPS28	-/.	-/.	chr8:79991910	chr8:79991925	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000147586.10	ENSG00000147586.10	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC060809.1	GPC3	+/.	-/.	chr15:81565292	chrX:133661643	intron	intron	translocation/3'-3'	0	0	0	216	169	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
PBX1	PBX1	+/.	+/.	chr1:164776939	chr1:164776979	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000185630.19	ENSG00000185630.19	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143152	intergenic	intron	translocation	0	0	0	0	748	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702347	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(17),low_entropy(1),merge_adjacent	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638062	chr7:116638077	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(67),low_entropy(20)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046190	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(10)	.	.	.
FMN2	RNA5SP349(5010),SNORD39(137498)	+/.	./.	chr1:240200874	chr11:109125996	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000155816.21	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886343	chr10:44886354	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(70),low_entropy(13)	.	.	.
LINC00486	5_8S_rRNA(2186),FP236383.3(121524)	+/.	./.	chr2:32916556	chr21:8259119	intron	intergenic	translocation	0	0	0	1606	52	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916546	chr21:8214784	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
TPT1P14(48517),RPL35AP37(90457)	TPT1P14(48532),RPL35AP37(90442)	./.	./.	chrX:15026980	chrX:15026995	intergenic	intergenic	duplication/ITD	0	0	0	121	121	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),merge_adjacent	.	.	.
RNU7-29P(10972),AL627313.1(26973)	.	./.	./.	chr1:26613404	GL000220.1:114149	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SLC22A23(42241),AL033523.1(85810)	CACNA1I(6529),ENTHD1(46780)	./.	./.	chr6:3499291	chr22:39696264	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683500	chr15:81683513	intron	intron	duplication	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TTLL5	TTLL5	+/.	+/.	chr14:75773929	chr14:75773938	intron	intron	duplication/ITD	0	0	0	15	0	low	.	.	.	.	.	ENSG00000119685.20	ENSG00000119685.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	SEZ6L	+/.	+/.	chr2:32916556	chr22:26311987	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000100095.19	.	.	downstream	downstream	mismatches	.	.	.
RPL7P17(7990),AC104771.1(21379)	RPL7P17(8051),AC104771.1(21318)	./.	./.	chr4:77091116	chr4:77091177	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC115100.1(211620),AC090506.1(87582)	AC115100.1(211663),AC090506.1(87539)	./.	./.	chr18:30625693	chr18:30625736	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC019330.1	AC019330.1	-/.	-/.	chr2:198640176	chr2:198640185	intron	intron	duplication/ITD	0	0	0	68	65	low	.	.	.	.	.	ENSG00000225421.2	ENSG00000225421.2	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
LINC00486	CSRP3-AS1	+/.	+/.	chr2:32916556	chr11:19204576	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000255308.1	.	.	downstream	downstream	mismatches	.	.	.
KDM4C	LINC02620	+/.	-/.	chr9:6721304	chr10:104479810	intron	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	ENSG00000107077.19	ENSG00000225768.1	.	.	upstream	upstream	mismatches(1)	.	.	.
NRP1	AL513321.1(21925),AL592466.1(602)	-/.	./.	chr10:33334709	chr10:65270717	5'UTR	intergenic	deletion	0	0	0	15	3	low	.	.	.	.	.	ENSG00000099250.18	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM83B	.	+/.	./.	chr6:54859661	KI270733.1:176199	intron	intergenic	translocation	0	0	0	3	.	low	.	.	.	.	.	ENSG00000168143.9	.	.	.	downstream	upstream	duplicates(5),uninteresting_contigs(2)	.	.	.
AP001823.1(3425),ELMOD1(763)	C12orf45	./.	+/.	chr11:107590328	chr12:105046178	intergenic	intron	translocation	0	0	0	683	1664	low	.	.	.	.	.	.	ENSG00000151131.11	.	.	upstream	downstream	mismatches(1)	.	.	.
CD81	AL162726.3(137673),RASEF(61723)	+/+	./+	chr11:2377523	chr9:82917867	5'UTR	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM83B	.	+/.	./.	chr6:54859661	GL000220.1:114264	intron	intergenic	translocation	0	0	0	3	.	low	.	.	.	.	.	ENSG00000168143.9	.	.	.	downstream	upstream	duplicates(5),uninteresting_contigs(2)	.	.	.
C2orf83	PAXBP1(174),C21orf62-AS1(134)	-/.	./.	chr2:227643292	chr21:32771966	intron	intergenic	translocation	0	0	0	18	126	low	.	.	.	.	.	ENSG00000042304.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	RPP40P1(11330),RANBP1P1(42584)	+/.	./.	chr2:32916556	chrX:25603138	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280009	chr1:148280108	intron	intron	duplication/ITD	0	0	0	133	132	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143166	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(2),low_entropy(20)	.	.	.
SHISA5(10328),PFKFB4(2530)	AL031073.2	./.	+/.	chr3:48515154	chrX:142679611	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000288098.1	.	.	upstream	downstream	mismatches(1)	.	.	.
SIM1	CARD16	-/.	-/.	chr6:100458071	chr11:105077867	intron	intron	translocation/3'-3'	0	0	0	69	13	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000204397.9	.	.	downstream	downstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	RGS17(21614),RNA5SP224(6324)	./.	./.	chr1:188690471	chr6:153152896	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824768	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096623	chr2:141096684	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262467	chr6:42262478	intron	intron	duplication/ITD	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),low_entropy(7),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392797	chr1:90392808	intron	intron	duplication/ITD	0	0	0	326	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RBBP6	.	+/.	./.	chr16:24540401	KI270733.1:125836	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000122257.20	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RUFY4(18119),CXCR2(16589)	DIP2A(27616),S100B(973)	./.	./.	chr2:218108700	chr21:46597631	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
LINC00486	AC226101.1	+/.	+/.	chr2:32916597	chr2:110611070	intron	exon	deletion	0	0	0	46	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000231536.1	.	.	downstream	upstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092346	chr11:88092443	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
LINC01611	LINC01611	-/.	-/.	chr6:84500338	chr6:84500369	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000231776.5	ENSG00000231776.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131212	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC01947(37496),AC091819.2(152452)	LINC01947(37507),AC091819.2(152441)	./.	./.	chr5:166963866	chr5:166963877	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	FIBIN(9776),BBOX1(33862)	./.	./.	chr1:188690471	chr11:27006863	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM83B	FP236383.3	+/.	+/.	chr6:54859661	chr21:8442062	intron	intron	translocation	0	0	0	3	35	low	.	.	.	.	.	ENSG00000168143.9	ENSG00000280441.3	.	.	downstream	upstream	duplicates(5),mismatches(2)	.	.	.
FAM149A	FAM149A	+/.	+/.	chr4:186136933	chr4:186137019	intron	intron	duplication/ITD	0	0	0	0	7	low	.	.	.	.	.	ENSG00000109794.13	ENSG00000109794.13	.	.	upstream	downstream	duplicates(3),low_entropy(4)	.	.	.
L29074.2	.	+/+	./+	chrX:147911828	KI270733.1:178323	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000274086.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785775	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
AC016694.1(51882),RBMY2WP(38110)	AC016694.1(51927),RBMY2WP(38065)	./.	./.	chrY:22724741	chrY:22724786	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674877	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(2),low_entropy(6)	.	.	.
NOTCH2(12177),RNU6-465P(14018)	AC092275.1	./.	+/.	chr1:120112956	chr16:85260115	intergenic	intron	translocation	0	0	0	1	2	low	.	.	.	.	.	.	ENSG00000287787.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	ERCC1	+/.	-/.	chr2:32916556	chr19:45450890	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000012061.16	.	.	downstream	upstream	mismatches	.	.	.
TAB2(11972),ZC3H12D(23210)	TAB2(11987),ZC3H12D(23195)	./.	./.	chr6:149423585	chr6:149423600	intergenic	intergenic	duplication/ITD	0	0	0	295	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(238),low_entropy(16)	.	.	.
AC104136.1	TUFMP1(4224),AC129926.2(1285)	-/.	./.	chr4:136004548	chr17:27088260	exon	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000251492.1	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202640735	chr1:202640750	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
OSBP2	OSBP2	+/.	+/.	chr22:30730712	chr22:30730775	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000184792.16	ENSG00000184792.16	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC106793.1	AC106793.1	+/.	+/.	chr16:58830258	chr16:58830315	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000245768.7	ENSG00000245768.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736203	chr3:64736212	intron	intron	duplication/ITD	0	0	0	974	81	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(127),low_entropy(2)	.	.	.
LINC01524	LINC01524	+/.	+/.	chr20:52204561	chr20:52204616	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000234948.2	ENSG00000234948.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	LINC01500	./.	+/.	chr1:188690471	chr14:59014166	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000258583.7	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442150	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
PTPRN2	IGH@-ext	-/.	-/.	chr7:158428357	chr14:105867114	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155093.19	IGH.g@-ext	.	.	downstream	downstream	mismatches(1)	.	.	.
BMPR1B	INTS5(552),C11orf98(8963),LBHD1(8963)	+/.	./.	chr4:94902262	chr11:62653854	intron	intergenic	translocation	0	0	0	1847	105	low	.	.	.	.	.	ENSG00000138696.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916559	GL000220.1:114283	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC01950	NEURL1	-/.	+/.	chr5:106932149	chr10:103571846	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251027.2	ENSG00000107954.10	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
AP001823.1(3427),ELMOD1(761)	AP001823.1(3444),ELMOD1(744)	./.	./.	chr11:107590330	chr11:107590347	intergenic	intergenic	duplication/ITD	0	0	0	683	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
EML1	EML1	+/.	+/.	chr14:99796198	chr14:99796207	intron	intron	duplication/ITD	0	0	0	1790	1790	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(3)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683458	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NXF2(27603),NXF2B(6071)	NXF2(27614),NXF2B(6060)	./.	./.	chrX:102354325	chrX:102354336	intergenic	intergenic	duplication/ITD	0	0	0	55	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF780A	.	-/.	./.	chr19:40090468	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197782.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092346	chr11:88092441	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AC245297.1	OTX2P1(77483),PCSK5(88586)	-/.	./.	chr1:149319443	chr9:75802058	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000215861.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	U6(246393),HSP90AB2P(35610)	+/.	./.	chr3:64736203	chr4:13297804	intron	intergenic	translocation	0	0	0	974	672	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	downstream	duplicates(21),mismatches(2)	.	.	.
AP001823.1(3425),ELMOD1(763)	MTCYBP27(464201),RNU6-976P(98653)	./.	./.	chr11:107590328	chr14:84641289	intergenic	intergenic	translocation	0	0	0	683	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RAB28	UNC79	-/-	+/+	chr4:13484094	chr14:93451852	CDS	intron	translocation	0	0	0	0	2	low	.	.	Ras_family(3%)|Cation-channel_complex_subunit_UNC-79(100%)	.	.	ENSG00000157869.16	ENSG00000133958.13	.	.	upstream	upstream	mismatches(1)	.	.	.
CANT1	5_8S_rRNA(2077),FP236383.3(121633)	-/-	./+	chr17:78995148	chr21:8259010	CDS	intergenic	translocation	0	0	0	8	2548	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	.	.	.	upstream	upstream	mismatches	.	.	.
KRT8P37(31730),CHCHD3P1(73097)	KRT8P37(31791),CHCHD3P1(73036)	./.	./.	chr10:8546836	chr10:8546897	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(2)	.	.	.
TMEM105(3174),AC027601.5(5335)	SERBP1P2(94226),AC010722.1(96784)	./.	./.	chr17:81333848	chrY:4897074	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LHX9(23325),NEK7(198191)	AC025277.1(37311),RPL7P47(68503)	./.	./.	chr1:197958803	chr16:17864217	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	GPC3	+/.	-/.	chr15:81565292	chrX:133661642	intron	intron	translocation/3'-3'	0	0	0	216	169	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117368	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
AL356157.1(162175),TMEM72-AS1(28840)	AL356157.1(162190),TMEM72-AS1(28825)	./.	./.	chr10:44764279	chr10:44764294	intergenic	intergenic	duplication/ITD	0	0	0	17	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(6)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158443	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824752	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092322	chr11:88092414	intron	intron	duplication/ITD	0	0	0	783	847	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618112	GL000220.1:160308	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00624(22357),BCL9(1269)	LINC00624(22370),BCL9(1256)	./.	./.	chr1:147540232	chr1:147540245	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC010132.1(7568),AC010132.4(49266)	AC010132.1(7623),AC010132.4(49211)	./.	./.	chr7:42852006	chr7:42852061	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
CANT1	.	-/-	./+	chr17:78995148	KI270733.1:131103	CDS	intergenic	translocation	0	0	0	8	.	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AL355674.1(53824),RORB-AS1(47149)	NCOA5LP(16498),CNEP1R1(39182)	./.	./.	chr9:74438402	chr16:49985228	intergenic	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAPK8IP1P1(9493),AC005829.2(5014)	TOP1	./.	+/.	chr17:46254537	chr20:41034526	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000198900.7	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01781(319116),MTND2P30(114883)	FGF18(88919),AC022440.1(178030)	./.	./.	chr1:80965907	chr5:171546545	intergenic	intergenic	translocation	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(136505),NXNP1(203196)	U3(136518),NXNP1(203183)	./.	./.	chr1:218678404	chr1:218678417	intergenic	intergenic	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262486	chr6:42262495	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
ASAP1	MVB12B	-/.	+/.	chr8:130071009	chr9:126479745	intron	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000153317.15	ENSG00000196814.15	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	.	./.	./.	chr4:136763598	KI270733.1:130716	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PIGS	RTEL1	-/.	+/.	chr17:28571017	chr20:63683596	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087111.21	ENSG00000258366.9	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479799	chr10:104479904	intron	intron	duplication	0	0	0	840	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
FAM217B(5309),CDH26(4434)	FAM217B(5318),CDH26(4425)	./.	./.	chr20:59953989	chr20:59953998	intergenic	intergenic	duplication/ITD	0	0	0	9	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683525	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
FAM207BP(9507),GXYLT1P1(17401)	FAM207BP(9555),GXYLT1P1(17353)	./.	./.	chr13:18707014	chr13:18707062	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262480	intergenic	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	GPC3	+/.	-/.	chr15:81565292	chrX:133661642	intron	intron	translocation/3'-3'	0	0	0	216	169	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
AC245123.1	AC124947.1	-/.	-/.	chr8:2565435	chr12:93375509	intron	intron	translocation	0	0	0	20	30	low	.	.	.	.	.	ENSG00000277526.5	ENSG00000257252.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AC102941.2(4644),AC022613.1(864)	MACROD2	./.	+/.	chr15:29674126	chr20:14784683	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000172264.17	.	.	upstream	downstream	mismatches	.	.	.
TEAD4	RELB	+/+	+/+	chr12:2981316	chr19:45037406	intron	CDS/splice-site	translocation	0	0	0	0	0	low	.	.	|RelB_transactivation_domain(71%)	.	.	ENSG00000197905.10	ENSG00000104856.14	.	.	downstream	upstream	mismatches(1)	.	.	.
PLD5	AC077690.1	-/-	-/-	chr1:242524157	chr3:7665022	CDS	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000180287.17	ENSG00000270207.2	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479897	chr14:82214962	intron	intergenic	translocation	0	0	0	988	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479799	chr10:104479898	intron	intron	duplication/ITD	0	0	0	840	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
XPR1	XPR1	+/.	+/.	chr1:180714345	chr1:180714402	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000143324.14	ENSG00000143324.14	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
LINC00486	LCORL	+/.	-/.	chr2:32916556	chr4:18009337	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000178177.16	.	.	downstream	downstream	mismatches	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380595	chr20:36380608	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824753	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	145	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(1)	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734433	chr6:46734442	intron	intron	duplication/ITD	0	0	0	49	49	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ACYP1	GLRA2	-/.	+/.	chr14:75068465	chrX:14604660	intron	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000119640.9	ENSG00000101958.14	.	.	downstream	upstream	mismatches(1)	.	.	.
SH3TC1	5_8S_rRNA(1979),FP236383.3(121731)	+/.	./.	chr4:8239876	chr21:8258912	intron	intergenic	translocation	0	0	0	7	101	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	upstream	upstream	mismatches	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138685	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MIR656(1287),MEG9(195)	MIR656(1300),MEG9(182)	./.	./.	chr14:101068088	chr14:101068101	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AGT	GALNS	-/.	-/.	chr1:230714120	chr16:88855907	5'UTR	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135744.9	ENSG00000141012.13	.	.	downstream	downstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661559	chrX:133661576	intron	intron	duplication/ITD	0	0	0	190	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392889	chr10:104479896	intron	intron	translocation/3'-3'	0	0	0	334	988	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
CACNA1B	FAM120C	+/.	-/.	chr9:138016811	chrX:54085829	intron	CDS	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000148408.13	ENSG00000184083.12	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114283	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
AC009803.1	DMD	-/.	-/.	chr12:115594129	chrX:31138625	intron	intron	translocation/5'-5'	0	0	0	0	95	low	.	.	.	.	.	ENSG00000257407.1	ENSG00000198947.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479799	chr11:88092445	intron	intron	translocation	0	0	0	840	712	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
RN7SKP48(34876),AC097488.1(110458)	.	./.	./.	chr4:85135699	KI270733.1:133312	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078775	chr1:225078870	intron	intron	duplication/ITD	0	0	0	19	28	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	small_insert_size	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785771	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
AC016026.1	.	-/.	./.	chr22:17796203	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000093100.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FXNP1(22677),NRXN3(87418)	FXNP1(22776),NRXN3(87319)	./.	./.	chr14:78082955	chr14:78083054	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(34),low_entropy(13)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9785),AC108063.2(20070)	./.	./.	chr4:16094104	chr4:16094163	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392889	chr10:104479904	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	mismatches	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702322	chr11:3702331	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092435	chr21:8220959	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
U3(199),MRRFP1(275263)	U3(235),MRRFP1(275227)	./.	./.	chrX:122840844	chrX:122840880	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458069	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FOXF2(43949),RN7SL352P(67770)	MTCO3P30(61595),HMGB3P23(76366)	./.	./.	chr6:1439552	chr9:31568210	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262485	chr6:42262494	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261464	chr1:162261526	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
PPP2CA	FP236383.3	-/.	+/.	chr5:134225650	chr21:8397826	intron	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	ENSG00000113575.10	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HSBP1(39474),MLYCD(39904)	RNU6-184P(160392),AC011751.1(102949)	./.	./.	chr16:83859211	chrY:16496781	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
Z93929.1(11431),MDM4P1(21585)	Z93929.1(11444),MDM4P1(21572)	./.	./.	chrX:17911764	chrX:17911777	intergenic	intergenic	duplication/ITD	0	0	0	25	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(12)	.	.	.
AL442224.1(19793),BARX1(73494)	AL442224.1(19854),BARX1(73433)	./.	./.	chr9:93878133	chr9:93878194	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
EXT1(1819),SAMD12(75810)	EXT1(1870),SAMD12(75759)	./.	./.	chr8:118113645	chr8:118113696	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(1)	.	.	.
FP236383.3(3751),FP236383.11(3777)	FP236383.3(3848),FP236383.11(3680)	./.	./.	chr21:8458543	chr21:8458640	intergenic	intergenic	duplication/ITD	0	0	0	19	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(13)	.	.	.
SLC6A14	SLC6A14	+/.	+/.	chrX:116445459	chrX:116445508	intron	intron	duplication/ITD	0	0	0	687	687	low	.	.	.	.	.	ENSG00000268104.3	ENSG00000268104.3	.	.	upstream	downstream	duplicates(123),low_entropy(4)	.	.	.
H3-4	AC008014.1	-/-	+/-	chr1:228424931	chr12:46746317	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Core_histone_H2A/H2B/H3/H4(99%)|	.	.	ENSG00000168148.4	ENSG00000257261.6	.	.	upstream	downstream	mismatches(1)	.	.	.
AC010251.1(76686),STK32A-AS1(6278)	DLL3	./.	+/.	chr5:147173926	chr19:39506978	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000090932.11	.	.	downstream	upstream	mismatches(1)	.	.	.
MYO5B	MYO5B	-/.	-/.	chr18:50122589	chr18:50122681	intron	intron	duplication/ITD	0	0	0	0	23	low	.	.	.	.	.	ENSG00000167306.20	ENSG00000167306.20	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
RN7SL680P(78629),AL132981.1(227304)	RN7SL680P(78642),AL132981.1(227291)	./.	./.	chr20:39428021	chr20:39428034	intergenic	intergenic	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(7)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396370	chr10:104396385	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(44),low_entropy(29)	.	.	.
LINC02346	LINC02346	+/.	+/.	chr15:26000043	chr15:26000116	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000206187.4	ENSG00000206187.4	.	.	upstream	downstream	low_entropy(1)	.	.	.
VPS54(36311),AC012368.2(30614)	AC005772.2	./.	-/.	chr2:64055739	chr17:15079006	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000287307.1	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046191	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(19),low_entropy(1)	.	.	.
HAUS4(2346),AJUBA(11670)	SLFN13	./.	-/.	chr14:22959507	chr17:35448412	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000154760.14	.	.	upstream	downstream	mismatches(1)	.	.	.
SGMS1-AS1	.	+/.	./.	chr10:50624032	GL000220.1:158224	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000226200.7	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683468	chr15:81683477	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
XPR1	XPR1	+/.	+/.	chr1:180714345	chr1:180714405	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000143324.14	ENSG00000143324.14	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC021546.1	ZFPM2	-/.	+/.	chr8:105155556	chr8:105155596	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000254041.1	ENSG00000169946.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
SGMS1	5_8S_rRNA(2082),FP236383.3(121628)	-/.	./.	chr10:50624032	chr21:8259015	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000198964.14	.	.	.	upstream	upstream	mismatches	.	.	.
NFU1P2(125228),LINC01776(8051)	NFU1P2(125237),LINC01776(8042)	./.	./.	chr1:98202696	chr1:98202705	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC090409.2(4620),AC090409.1(1670)	AC090409.2(4672),AC090409.1(1618)	./.	./.	chr18:61584076	chr18:61584128	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KLHL7-DT	AC025580.2	-/.	+/.	chr7:23104754	chr15:45462594	intron	intron	translocation/5'-5'	0	0	0	3	4	low	.	.	.	.	.	ENSG00000230658.2	ENSG00000259354.5	.	.	upstream	downstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638077	chr7:116638086	intron	intron	duplication/ITD	0	0	0	119	117	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FLT1	AC016304.1(54226),TMCO5A(376610)	-/.	./.	chr13:28494947	chr15:37545329	5'UTR	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000102755.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KLRB1	HGS	-/.	+/.	chr12:9594772	chr17:81688568	3'UTR	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000111796.4	ENSG00000185359.14	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01198(14967),LRCH1(22243)	AC060809.1	./.	+/.	chr13:46530925	chr15:81565302	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
AC104042.1(688042),AC061997.1(316216)	AC104042.1(688094),AC061997.1(316164)	./.	./.	chr11:37385909	chr11:37385961	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AL357833.1(94714),AL450322.2(97938)	AP001977.1	./.	+/.	chr10:3651028	chr11:121765671	intergenic	intron	translocation	0	0	0	2	23	low	.	.	.	.	.	.	ENSG00000286044.1	.	.	upstream	upstream	mismatches(1)	.	.	.
THEMIS	THEMIS	-/.	-/.	chr6:127729142	chr6:127729155	intron	intron	duplication/ITD	0	0	0	7	1	low	.	.	.	.	.	ENSG00000172673.11	ENSG00000172673.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
INO80C(70122),GALNT1(13016)	PAXBP1(171),C21orf62-AS1(137)	./.	./.	chr18:35568101	chr21:32771963	intergenic	intergenic	translocation	0	0	0	35	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SPDYE10P(12627),GTF2IP4(31171)	SPDYE10P(12688),GTF2IP4(31110)	./.	./.	chr7:73123767	chr7:73123828	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MEIKIN	MEIKIN	-/.	-/.	chr5:131885346	chr5:131885357	intron	intron	duplication/ITD	0	0	0	170	9	low	.	.	.	.	.	ENSG00000239642.6	ENSG00000239642.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC114477.1(10760),RANP7(81328)	.	./.	./.	chr3:22822807	KI270733.1:131363	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DNAJC1	DNAJC1	-/.	-/.	chr10:21813145	chr10:21813220	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000136770.11	ENSG00000136770.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FAM207BP(9514),GXYLT1P1(17394)	FAM207BP(9568),GXYLT1P1(17340)	./.	./.	chr13:18707021	chr13:18707075	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
MYLK3	MYLK3	-/.	-/.	chr16:46758305	chr16:46758318	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000140795.13	ENSG00000140795.13	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22683),NRXN3(87412)	./.	./.	chr14:78082946	chr14:78082961	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(16),low_entropy(6)	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620579	chr5:110620592	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AL450426.1(19778),OR13C8(12196)	ZC2HC1C	./.	+/.	chr9:104556972	chr14:75068465	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000119703.15	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNTL6	AC131274.3(4075753),AC069061.1(199238)	+/.	./.	chr4:172017786	chr17:26782456	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174473.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32297964	chr7:32298062	intron	intron	duplication/ITD	0	0	0	25	72	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF496	NLGN4X	-/.	-/.	chr1:247323510	chrX:6227403	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000162714.12	ENSG00000146938.16	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02301	LINC02301	+/.	+/.	chr14:82715489	chr14:82715504	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000258743.6	ENSG00000258743.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
STARD4-AS1	STARD4-AS1	+/.	+/.	chr5:111531930	chr5:111531999	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000246859.3	ENSG00000246859.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
FLT1	KDM4B	-/.	+/.	chr13:28494947	chr19:5090394	5'UTR	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000102755.12	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
NPS(28932),AL391005.1(152090)	NPS(28967),AL391005.1(152055)	./.	./.	chr10:127582472	chr10:127582507	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	chr7:76580348	chr7:76580415	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000205485.13	ENSG00000205485.13	.	.	upstream	downstream	low_entropy(8)	.	.	.
TRAF3IP3	TRAF3IP3	+/.	+/.	chr1:209765179	chr1:209765194	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000009790.15	ENSG00000009790.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL357833.1(94714),AL450322.2(97938)	AL357833.1(94729),AL450322.2(97923)	./.	./.	chr10:3651028	chr10:3651043	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC026765.3	.	+/.	./.	chr12:114698741	KI270733.1:176284	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257817.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	AC103876.1	+/.	+/.	chr2:32916556	chr15:83296232	intron	intron	translocation/5'-5'	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000259986.1	.	.	downstream	downstream	mismatches	.	.	.
LINC02608(44056),PPP2R5A(2377)	MMP2	./.	+/.	chr1:212283033	chr16:55433378	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000087245.13	.	.	downstream	downstream	mismatches(1)	.	.	.
HNRNPDP1(52444),AL355852.1(47370)	HNRNPDP1(52459),AL355852.1(47355)	./.	./.	chrX:64097502	chrX:64097517	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
MGAT5B	POP4(20364),PLEKHF1(27858)	+/.	./.	chr17:76868639	chr19:29637601	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167889.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SH3TC1	.	+/+	./+	chr4:8227971	GL000220.1:158121	CDS	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000125089.17	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
MICAL3	.	-/.	./.	chr22:17796203	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000243156.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	chr7:76580348	chr7:76580413	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000205485.13	ENSG00000205485.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
U3(104497),GPC1(41723)	AC025366.1(57830),AP005357.1(76639)	./.	./.	chr2:240393940	chr8:110690224	intergenic	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	SLC39A14	./.	+/.	chr7:39505425	chr8:22396561	intergenic	intron	translocation	0	0	0	23	295	low	.	.	.	.	.	.	ENSG00000104635.15	.	.	upstream	upstream	mismatches(1)	.	.	.
SOGA1	SOGA1	-/.	-/.	chr20:36810708	chr20:36810753	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000149639.15	ENSG00000149639.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479799	chr11:88092437	intron	intron	translocation	0	0	0	840	838	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
LY6E(14635),C8orf31(742)	AP005436.1	./.	-/.	chr8:143038467	chr11:88092445	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	low_entropy	.	.	.
SH3BGRL	SH3BGRL	+/.	+/.	chrX:81238793	chrX:81238808	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000131171.13	ENSG00000131171.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661582	chrX:133661591	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(3)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491189	chr11:105491198	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8403226	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
KCNMB2-AS1	AL050402.1(52847),AL133456.1(50932)	-/.	./.	chr3:178655096	chr22:27512907	intron	intergenic	translocation	0	0	0	13	1	low	.	.	.	.	.	ENSG00000237978.6	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298018	chr7:32298027	intron	intron	duplication/ITD	0	0	0	72	72	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(15),low_entropy(3)	.	.	.
FXNP1(22764),NRXN3(87331)	AC011474.1	./.	-/.	chr14:78083042	chr19:29447568	intergenic	intron	translocation	0	0	0	640	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	BX890604.1	+/.	-/.	chr2:32916556	chrX:3881327	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000285756.2	.	.	downstream	downstream	mismatches	.	.	.
RPL23AP28(136321),PAX3(18572)	RPL23AP28(136392),PAX3(18501)	./.	./.	chr2:222181315	chr2:222181386	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
B3GALNT1	AC093627.22	-/.	-/.	chr3:161095877	chr7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169255.15	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
YWHAQP9(79871),AL356010.2(50505)	YWHAQP9(79942),AL356010.2(50434)	./.	./.	chr1:238188438	chr1:238188509	intergenic	intergenic	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262483	chr6:42262491	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
CSTP1	.	-/.	./.	chr20:23922329	GL000220.1:158121	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000228476.2	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
ENPP6	AC025580.2	-/.	+/.	chr4:184122405	chr15:45462431	intron	intron	translocation/5'-5'	0	0	0	16	4	low	.	.	.	.	.	ENSG00000164303.11	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
GABPB2	MED13	+/.	-/.	chr1:151087303	chr17:61947469	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143458.12	ENSG00000108510.10	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565344	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664203	chr19:30664279	intron	intron	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046185	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(10)	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664203	chr19:30664277	intron	intron	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
C16orf95	RUFY4(18120),CXCR2(16588)	-/-	./-	chr16:87317152	chr2:218108701	CDS	intergenic	translocation	0	0	0	0	125	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EXD3	ACTN4	-/.	+/.	chr9:137351797	chr19:38666177	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187609.16	ENSG00000130402.13	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
C2orf83	C2orf83	-/.	-/.	chr2:227643250	chr2:227643288	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000042304.13	ENSG00000042304.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC011933.4	ADGRG2	+/.	-/.	chr17:75347755	chrX:19087138	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265987.1	ENSG00000173698.18	.	.	downstream	downstream	mismatches(1)	.	.	.
MARCHF3	.	-/.	./.	chr5:126930649	GL000220.1:114266	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000173926.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785679	chr2:101785797	intron	intron	duplication	0	0	0	703	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138638	intron	intron	duplication/ITD	0	0	0	95	0	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
ADAMTS9-AS2	AL365204.3(90887),AL513317.1(22400)	+/.	./.	chr3:64736203	chr9:24047331	intron	intergenic	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661563	chrX:133661578	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC096751.2(65950),GLRA3(29923)	GLRA3	./.	-/.	chr4:174606997	chr4:174639430	intergenic	3'UTR	duplication	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000145451.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092346	chr11:88092439	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
SLC25A21	SLC25A43	-/.	+/.	chr14:36875068	chrX:119425716	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183032.12	ENSG00000077713.19	.	.	upstream	downstream	mismatches(1)	.	.	.
AC005632.2	HECTD4	-/-	-/-	chr16:21536749	chr12:112169625	exon	CDS	translocation	0	0	0	4	0	low	.	.	|HECT-domain_(ubiquitin-transferase)(100%)	.	.	ENSG00000257639.1	ENSG00000173064.13	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262488	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	UBE2FP2(4909),AC138305.1(128284)	+/.	./.	chr15:81683524	chr16:63185980	intron	intergenic	translocation	0	0	0	149	35	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	downstream	downstream	low_entropy	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446351	chr12:50446360	intron	intron	duplication/ITD	0	0	0	86	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(15),low_entropy(3)	.	.	.
LY6E(14619),C8orf31(758)	LY6E(14720),C8orf31(657)	./.	./.	chr8:143038451	chr8:143038552	intergenic	intergenic	duplication	0	0	0	171	168	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AC002072.1	AC002072.1	+/.	+/.	chrX:113133817	chrX:113133832	intron	intron	duplication/ITD	0	0	0	6	1	low	.	.	.	.	.	ENSG00000286072.1	ENSG00000286072.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC117525.1(118801),RNA5SP188(35408)	RPSAP2(46118),NOP56P1(4611)	./.	./.	chr5:102095599	chr6:28779022	intergenic	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683525	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
BMPER	BMPER	+/.	+/.	chr7:34065214	chr7:34065223	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000164619.10	ENSG00000164619.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RUFY4(18119),CXCR2(16589)	ADNP	./.	-/.	chr2:218108700	chr20:50931008	intergenic	5'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000101126.18	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392888	chr11:88092439	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	low_entropy	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262574	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
SORCS2	CYP2A7	+/.	-/.	chr4:7676899	chr19:40880795	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000184985.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479905	chr14:82214962	intron	intergenic	translocation	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419120	chr14:106419209	exon	exon	duplication/ITD	0	0	0	71	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392888	chr11:88092445	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	low_entropy	.	.	.
RNU7-51P(667040),RNU6ATAC28P(34704)	RNU7-51P(667055),RNU6ATAC28P(34689)	./.	./.	chr14:83715680	chr14:83715695	intergenic	intergenic	duplication/ITD	0	0	0	31	29	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(22),low_entropy(8)	.	.	.
LINC00486	.	+/.	./.	chr2:32916568	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661561	chrX:133661630	intron	intron	duplication/ITD	0	0	0	195	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MCUB	MCUB	+/.	+/.	chr4:109618952	chr4:109618967	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000005059.16	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
TMPRSS6(15796),IL2RB(334)	TMPRSS6(15855),IL2RB(275)	./.	./.	chr22:37125509	chr22:37125568	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LY6E(14635),C8orf31(742)	AP005436.1	./.	-/.	chr8:143038467	chr11:88092437	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	low_entropy	.	.	.
VDR(3041),AC004801.7(14408)	SPRED3	./.	+/.	chr12:47946089	chr19:38390420	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188766.12	.	.	upstream	upstream	mismatches(1)	.	.	.
AL596087.2	AL050402.1(52850),AL133456.1(50929)	+/.	./.	chr1:166288031	chr22:27512910	intron	intergenic	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000229588.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104041.1	GPC3	-/.	-/.	chr15:81683520	chrX:133661569	intron	intron	translocation	0	0	0	149	195	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000147257.15	.	.	downstream	upstream	low_entropy	.	.	.
LY6E(14635),C8orf31(742)	AP005436.1	./.	-/.	chr8:143038467	chr11:88092439	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	low_entropy	.	.	.
ZC2HC1C	SRPX	+/.	-/.	chr14:75068465	chrX:38180137	intron	intron	translocation/5'-5'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000119703.15	ENSG00000101955.15	.	.	downstream	upstream	mismatches(1)	.	.	.
ERBB3	PIGS	+/.	-/.	chr12:56097170	chr17:28571017	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065361.16	ENSG00000087111.21	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262481	chr6:42262490	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(5)	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702352	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(11),mismatches(1)	.	.	.
BUB3P1(59585),AC002386.1(267706)	ANGPT1	./.	-/.	chr7:109054614	chr8:107291889	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000154188.10	.	.	downstream	upstream	mismatches	.	.	.
LINC01144	RTEL1	+/+	+/-	chr1:45304502	chr20:63683596	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281912.1	ENSG00000258366.9	.	.	downstream	downstream	mismatches(1)	.	.	.
ERBB3	VWA8	+/.	-/.	chr12:56097170	chr13:41961030	CDS	5'UTR	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000065361.16	ENSG00000102763.18	.	.	upstream	downstream	mismatches(1)	.	.	.
SERPINB1	CYCSP44(6651),AL713923.1(49384)	-/.	./.	chr6:2841670	chrX:145183545	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000021355.13	.	.	.	downstream	upstream	mismatches(1)	.	.	.
VWA8	RTEL1	-/.	+/.	chr13:41961030	chr20:63683596	5'UTR	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000102763.18	ENSG00000258366.9	.	.	downstream	downstream	mismatches(1)	.	.	.
KDM4B	.	+/.	./.	chr19:5086526	GL000220.1:160764	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000127663.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RPSAP2(46118),NOP56P1(4611)	FP325330.2(14095),BX284656.2(67091)	./.	./.	chr6:28779022	chr22:48072370	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	LINC02613	./.	-/.	chr1:188690471	chr2:38515936	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000231367.6	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PREPL	IQCH-AS1	-/.	-/.	chr2:44361340	chr15:67307531	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138078.16	ENSG00000259673.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104136.1	CR381653.2(152031),NCOR1P4(1258)	-/.	./.	chr4:136004548	chr21:9528676	exon	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000251492.1	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
SYT2	DMD	-/.	-/.	chr1:202691744	chrX:31138625	intron	intron	translocation	0	0	0	31	95	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000198947.17	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397821	intron	intron	translocation	0	0	0	1606	450	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
KIF6	MIR3668(50092),AL035446.2(320370)	-/.	./.	chr6:39614491	chr6:140255418	intron	intergenic	deletion	0	0	0	0	26	low	.	.	.	.	.	ENSG00000164627.18	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131109	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670920	chr2:23670931	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF808	ZNF701	+/.	+/.	chr19:52561159	chr19:52561213	intron	intron	duplication	0	0	0	13	13	low	.	.	.	.	.	ENSG00000198482.14	ENSG00000167562.13	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
AC025470.2	RALGDS	+/.	-/.	chr5:57533341	chr9:133148046	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250961.2	ENSG00000160271.16	.	.	upstream	upstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275761	chr13:49275796	intron	intron	duplication/ITD	0	0	0	191	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
COQ8A	SAPCD2P1(11260),ZNF735(12937)	+/.	./.	chr1:226944691	chr7:64194153	intron	intergenic	translocation	0	0	0	8	78	low	.	.	.	.	.	ENSG00000163050.18	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC02864	FP236383.3	-/.	+/.	chr18:73168245	chr21:8397434	intron	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	ENSG00000263711.6	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638070	chr7:116638079	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131104	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
PTGR1	CFAP58	-/.	+/.	chr9:111561018	chr10:104396379	intron	intron	translocation/3'-3'	0	0	0	0	217	low	.	.	.	.	.	ENSG00000106853.20	ENSG00000120051.15	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2083),FP236383.3(121627)	+/.	./.	chr2:32916556	chr21:8259016	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
FAM83B	FP671120.4	+/.	+/.	chr6:54859661	chr21:8214798	intron	intron	translocation	0	0	0	3	2358	low	.	.	.	.	.	ENSG00000168143.9	ENSG00000278996.1	.	.	downstream	upstream	duplicates(5),mismatches(2)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143158	intron	intron	duplication/ITD	0	0	0	654	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674862	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC026765.3	.	+/.	./.	chr12:114698741	GL000220.1:158321	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000257817.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GPRIN1(8931),SNCB(995)	.	./.	./.	chr5:176619087	KI270733.1:131120	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),uninteresting_contigs(1)	.	.	.
AL009177.1(42498),AL109914.1(52315)	GPC3	./.	-/.	chr6:14545199	chrX:133661562	intergenic	intron	translocation	0	0	0	0	195	low	.	.	.	.	.	.	ENSG00000147257.15	.	.	upstream	upstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	chr5:80650927	chr21:8397443	intron	intron	translocation/3'-3'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702314	chr11:3702355	intron	intron	duplication/ITD	0	0	0	437	437	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(5)	.	.	.
LINC00498	LINC00498	-/.	-/.	chr4:138299706	chr4:138299772	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000248397.1	ENSG00000248397.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419214	chr14:106419121	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
AL157778.1	AL157778.1	+/.	+/.	chrX:98484522	chrX:98484573	intron	intron	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	ENSG00000281566.3	ENSG00000281566.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
MARCHF3	.	-/.	./.	chr5:126930649	GL000220.1:158238	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000173926.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC096751.2(65950),GLRA3(29923)	AL031073.2	./.	+/.	chr4:174606997	chrX:142715620	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000288098.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092338	chr11:88092441	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
LRRK1	MMP2-AS1	+/.	-/.	chr15:101003905	chr16:55433378	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154237.13	ENSG00000260135.7	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02062	LINC02062	+/.	+/.	chr5:98988697	chr5:98988706	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000248489.2	ENSG00000248489.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNU7-29P(10972),AL627313.1(26973)	5_8S_rRNA(1979),FP236383.3(121731)	./.	./.	chr1:26613404	chr21:8258912	intergenic	intergenic	translocation	0	0	0	7	101	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
ZFPM2	ZFPM2	+/.	+/.	chr8:105155556	chr8:105155596	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000169946.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
CTNND2	TTLL1	-/.	-/.	chr5:11816716	chr22:43079835	intron	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262592	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	ZNHIT1(7262),CLDN15(640)	+/.	./.	chr2:32916556	chr7:101231452	intron	intergenic	translocation	0	0	0	1606	5	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785669	chr2:101785749	intron	intron	duplication/ITD	0	0	0	703	765	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPS2P4	LINC00486	-/-	+/-	chr14:104836846	chr2:32916556	exon	intron	translocation/5'-5'	0	0	0	2	1606	low	.	.	.	.	.	ENSG00000196183.5	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565353	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR3668(50092),AL035446.2(320370)	AL162373.1(120296),MOB1AP1(11171)	./.	./.	chr6:140255418	chr13:85957828	intergenic	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGSF9B	.	-/.	./.	chr11:133918828	GL000220.1:160429	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000080854.16	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00877	AC105180.2(10848),ZFAT(76453)	-/.	./.	chr3:72092967	chr8:134401335	intron	intergenic	translocation	1	0	0	0	120	low	.	.	.	.	.	ENSG00000241163.8	.	.	.	upstream	downstream	duplicates(5),min_support	.	.	.
DNAH14	RNU7-53P(79106),ARL2BPP4(63633)	+/.	./.	chr1:225078844	chr5:130465786	intron	intergenic	translocation	0	0	0	23	2	low	.	.	.	.	.	ENSG00000185842.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GRIK4	FRMD5	+/.	-/.	chr11:120606304	chr15:44009763	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000149403.13	ENSG00000171877.21	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC106870.3	ALK	-/.	-/.	chr2:29889686	chr2:29889745	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000288553.1	ENSG00000171094.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565298	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
SFN(3798),GPN2(7878)	SFN(3807),GPN2(7869)	./.	./.	chr1:26868254	chr1:26868263	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PGAM4P2(38320),KRT18P21(117568)	NUP98	./.	-/.	chr4:115803139	chr11:3702365	intergenic	intron	translocation	0	0	0	18	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPSAP2(46058),NOP56P1(4671)	RPSAP2(46112),NOP56P1(4617)	./.	./.	chr6:28778962	chr6:28779016	intergenic	intergenic	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
AC026765.3	5_8S_rRNA(2179),FP236383.3(121531)	+/.	./.	chr12:114698741	chr21:8259112	intron	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	ENSG00000257817.2	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565304	chr15:81565313	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
BBS9	CELF4	+/.	-/.	chr7:33410882	chr18:37408494	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000122507.21	ENSG00000101489.20	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL136115.3(9930),KHDRBS1(16904)	RADIL	./.	-/.	chr1:31996964	chr7:4819762	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000157927.17	.	.	upstream	downstream	mismatches(1)	.	.	.
INPP5D	AC137894.3(8356),AC137894.1(2417)	+/.	./.	chr2:233117636	chr11:526490	intron	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCA	IL17REL	+/+	-/+	chr17:66302744	chr22:49996701	5'UTR	3'UTR	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	ENSG00000188263.10	.	.	downstream	upstream	mismatches(1)	.	.	.
PRRX1	PRRX1	+/.	+/.	chr1:170689811	chr1:170689875	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000116132.12	ENSG00000116132.12	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3505),ELMOD1(683)	./.	./.	chr11:107590331	chr11:107590408	intergenic	intergenic	duplication/ITD	0	0	0	683	685	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(5)	.	.	.
AC004825.1(21665),AC004825.2(25563)	AC004825.1(21736),AC004825.2(25492)	./.	./.	chr14:70881094	chr14:70881165	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785670	chr2:101785769	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
ATP2B2	MTATP6P24(592),NUBP1(17898)	-/-	./+	chr3:10449762	chr16:10725888	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157087.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FGFRL1	+/.	+/.	chr2:32916556	chr4:1011711	intron	5'UTR	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000127418.15	.	.	downstream	upstream	mismatches	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469899	chr7:26469914	intron	intron	duplication/ITD	0	0	0	42	9	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392813	chr1:90392822	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02346	LINC02346	+/.	+/.	chr15:26000037	chr15:26000116	intron	intron	duplication/ITD	0	0	0	1	4	low	.	.	.	.	.	ENSG00000206187.4	ENSG00000206187.4	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298000	chr7:32298013	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092425	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
TMPRSS6(15793),IL2RB(337)	TMPRSS6(15818),IL2RB(312)	./.	./.	chr22:37125506	chr22:37125531	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FHIT	MT-RNR1	-/.	+/.	chr3:60578626	chrM:1503	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000189283.10	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
FAM83B	DIP2A(27618),S100B(971)	+/.	./.	chr6:54859664	chr21:46597633	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000168143.9	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661569	chrX:133661640	intron	intron	duplication/ITD	0	0	0	195	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	small_insert_size	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565293	chr15:81565348	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
STARD4-AS1	STARD4-AS1	+/.	+/.	chr5:111531946	chr5:111531955	intron	intron	duplication/ITD	0	0	0	3	1	low	.	.	.	.	.	ENSG00000246859.3	ENSG00000246859.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683466	chr15:81683475	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(6),low_entropy(6)	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691765	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479827	chr10:104479836	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916559	chr21:8442081	intron	intron	translocation/5'-5'	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
MIR5100(1036),RET(78347)	FP671120.4	./.	+/.	chr10:42998717	chr21:8214786	intergenic	intron	translocation	0	0	0	8	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691757	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(3)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158221	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661640	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380594	chr20:36380609	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(8),low_entropy(4)	.	.	.
TSHZ3	TSHZ3	-/.	-/.	chr19:31183173	chr19:31183242	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000121297.8	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
TSHZ3	LINC01791	-/.	+/.	chr19:31183173	chr19:31183242	intron	intron	duplication/5'-5'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000267777.2	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:160675	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916554	GL000220.1:116703	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
MYOM2(48439),AC245519.1(279885)	ARRB1	./.	-/.	chr8:2213991	chr11:75309066	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000137486.17	.	.	downstream	upstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626662	chrX:18626675	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(36),low_entropy(9)	.	.	.
LINC01791	LINC01791	+/.	+/.	chr19:31183173	chr19:31183242	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000267777.2	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
AC012355.1(57428),ANKRD11P1(266719)	AC012355.1(57478),ANKRD11P1(266669)	./.	./.	chr2:80927618	chr2:80927668	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GABPB2	AC018765.1(20222),HPRT1P2(245014)	+/.	./.	chr1:151087305	chr5:30003336	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143458.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TSHZ3	LINC01791	-/.	+/.	chr19:31183179	chr19:31183247	intron	intron	duplication/5'-5'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000267777.2	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01791	TSHZ3	+/.	-/.	chr19:31183179	chr19:31183247	intron	intron	duplication/3'-3'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000121297.8	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MAGEH1(11194),USP51(19856)	MAGEH1(11237),USP51(19813)	./.	./.	chrX:55464760	chrX:55464803	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01791	LINC01791	+/.	+/.	chr19:31183179	chr19:31183247	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000267777.2	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419214	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
MARCHF1	ZFPM2	-/.	+/.	chr4:164286881	chr8:104827532	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145416.13	ENSG00000169946.14	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	AC016026.1	+/.	-/.	chr21:8397826	chr22:17796203	intron	intron	translocation	0	0	0	450	0	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000093100.13	.	.	upstream	upstream	mismatches(1)	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691726	chr1:202691767	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626662	chrX:18626677	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL008633.1	AL008633.1	-/.	-/.	chrX:128354520	chrX:128354572	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000225689.2	ENSG00000225689.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565298	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176182	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479902	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	duplicates	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092342	chr11:88092435	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(2),same_gene	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491170	chr11:105491185	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565364	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CYB5R4(11300),AL034347.1(5005)	CYB5R4(11336),AL034347.1(4969)	./.	./.	chr6:83978723	chr6:83978759	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491172	chr11:105491185	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8446508	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
RPSAP2(46118),NOP56P1(4611)	UFL1-AS1	./.	-/.	chr6:28779022	chr6:96259713	intergenic	intron	inversion	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000233797.2	.	.	downstream	downstream	mismatches(1)	.	.	.
AC107954.1(41460),AC013565.1(6272)	.	./.	./.	chr15:89031705	KI270733.1:145500	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FXNP1(22687),NRXN3(87408)	FXNP1(22774),NRXN3(87321)	./.	./.	chr14:78082965	chr14:78083052	intergenic	intergenic	duplication/ITD	0	0	0	673	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683459	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAF	LINC00486	-/-	+/-	chr16:79599203	chr2:32916565	CDS	intron	translocation/5'-5'	0	0	0	3	1588	low	.	.	Maf_N-terminal_region(100%)|	.	.	ENSG00000178573.7	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
LINC02885(2309),ISX(60965)	LINC02885(2324),ISX(60950)	./.	./.	chr22:35005171	chr22:35005186	intergenic	intergenic	duplication/ITD	0	0	0	43	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02885(2311),ISX(60963)	LINC02885(2324),ISX(60950)	./.	./.	chr22:35005173	chr22:35005186	intergenic	intergenic	duplication/ITD	0	0	0	43	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NRP1	AP002371.1(8127),AP003072.4(53697)	-/.	./.	chr10:33334709	chr11:93080158	5'UTR	intergenic	translocation	0	0	0	15	3	low	.	.	.	.	.	ENSG00000099250.18	.	.	.	downstream	upstream	mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	chr5:175967559	chr15:45462786	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000051596.10	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CAPNS1	LINC00486	+/+	+/-	chr19:36141147	chr2:32916565	CDS	intron	translocation/5'-5'	0	0	0	3	1588	low	.	.	.	.	.	ENSG00000126247.11	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
AC093904.1(47763),ASAP2(12896)	AC093904.1(47835),ASAP2(12824)	./.	./.	chr2:9193869	chr2:9193941	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446361	chr12:50446370	intron	intron	duplication/ITD	0	0	0	85	70	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916565	chr21:8259013	intron	intergenic	translocation	0	0	0	1588	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
SLC35E4	.	+/+	./+	chr22:30636545	KI270733.1:131114	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000100036.13	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00665	LINC00665	-/.	-/.	chr19:36282288	chr19:36282335	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000232677.9	ENSG00000232677.9	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275783	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046183	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(4)	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83134541	chr16:83134591	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
STRBP	AC102941.2(4644),AC022613.1(864)	-/.	./.	chr9:123120505	chr15:29674126	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000165209.19	.	.	.	downstream	upstream	mismatches	.	.	.
AC005597.1	AC005597.1	-/.	-/.	chr19:30223438	chr19:30223451	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000267223.1	ENSG00000267223.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00923	LINC00923	-/.	-/.	chr15:97803487	chr15:97803500	intron	intron	duplication/ITD	0	0	0	31	0	low	.	.	.	.	.	ENSG00000251209.9	ENSG00000251209.9	.	.	upstream	downstream	duplicates(21),low_entropy(10)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	chr3:96618115	chr21:8441663	5'UTR	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000269028.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
HIVEP3	HIVEP3	-/.	-/.	chr1:41897929	chr1:41897981	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000127124.16	ENSG00000127124.16	.	.	upstream	downstream	low_entropy(2)	.	.	.
TMEM87B(12691),FBLN7(6376)	TMEM87B(12706),FBLN7(6361)	./.	./.	chr2:112132009	chr2:112132024	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
FOXK1	FOXK1	+/.	+/.	chr7:4705506	chr7:4705559	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000164916.11	ENSG00000164916.11	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
SYT6	TRIM39	-/.	+/.	chr1:114153810	chr6:30326898	5'UTR	5'UTR	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000134207.17	ENSG00000204599.14	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP2CA	FP671120.4	-/.	+/.	chr5:134225650	chr21:8214792	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000113575.10	ENSG00000278996.1	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PTPN2	PTPN2	-/.	-/.	chr18:12870464	chr18:12870477	intron	intron	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	ENSG00000175354.20	ENSG00000175354.20	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916604	chr10:127190668	intron	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	KI270708.1:35228	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RABGAP1L-DT	MAP4K4	-/.	+/.	chr1:174121817	chr2:101785793	intron	intron	translocation	0	0	0	0	710	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000071054.16	.	.	downstream	downstream	mismatches(1)	.	.	.
SPDYE10P(12640),GTF2IP4(31158)	SPDYE10P(12649),GTF2IP4(31149)	./.	./.	chr7:73123780	chr7:73123789	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GALNT2	FP671120.4	+/.	+/.	chr1:230175600	chr21:8209536	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000143641.10	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
TMCO3(3189),TFDP1(26942)	TMCO3(3198),TFDP1(26933)	./.	./.	chr13:113557779	chr13:113557788	intergenic	intergenic	duplication/ITD	0	0	0	13	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
NRXN1	LINC00486	-/-	+/-	chr2:50346877	chr2:32916565	CDS	intron	deletion/5'-5'	0	0	0	3	1588	low	.	.	EGF-like_domain(100%),Laminin_G_domain(82%)|	.	.	ENSG00000179915.24	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
KIAA2012	MAP1LC3BP1(11862),SLC24A2(31066)	+/.	./.	chr2:202083779	chr9:19476386	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329.14	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012-AS1	MAP1LC3BP1(11862),SLC24A2(31066)	-/.	./.	chr2:202083779	chr9:19476386	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035.4	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATP8B4	ATP8B4	-/.	-/.	chr15:50072922	chr15:50072937	intron	intron	duplication/ITD	0	0	0	53	0	low	.	.	.	.	.	ENSG00000104043.15	ENSG00000104043.15	.	.	upstream	downstream	low_entropy(3)	.	.	.
U3(104497),GPC1(41723)	FARS2	./.	+/.	chr2:240393940	chr6:5782068	intergenic	intron	translocation	0	0	0	16	4	low	.	.	.	.	.	.	ENSG00000145982.13	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FARS2	DACT2(25892),AL138918.1(29028)	+/.	./.	chr6:5782068	chr6:168345669	intron	intergenic	deletion	0	0	0	4	0	low	.	.	.	.	.	ENSG00000145982.13	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
H4-16	.	-/.	./.	chr12:14769961	KI270733.1:171938	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197837.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CCND1	AC016304.1(54229),TMCO5A(376607)	+/.	./.	chr11:69648771	chr15:37545332	intron	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000110092.4	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565344	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MARK1	.	+/.	./.	chr1:220591888	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000116141.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TSHZ3	TSHZ3	-/.	-/.	chr19:31183173	chr19:31183239	intron	intron	duplication/ITD	0	0	0	64	64	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000121297.8	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC019131.1	.	+/.	./.	chr4:98936686	GL000220.1:158478	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263923.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GYPC	GYPC	+/.	+/.	chr2:126663951	chr2:126663966	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000136732.16	ENSG00000136732.16	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125711	chr3:120125755	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ESR2	KDM6A	-/.	+/.	chr14:64217933	chrX:45003866	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140009.19	ENSG00000147050.16	.	.	downstream	upstream	mismatches(1)	.	.	.
EBF2(344),RNA5SP258(91123)	FP236383.3	./.	+/.	chr8:26045757	chr21:8397819	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262598	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
GLYATL1	.	+/.	./.	chr11:58919736	KI270733.1:131106	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166840.13	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AP001652.1	.	-/.	./.	chr11:58919736	KI270733.1:131106	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000255523.1	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
KIF6	KIF6	-/.	-/.	chr6:39346046	chr6:39346065	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000164627.18	ENSG00000164627.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442303	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	11	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
EBF2(344),RNA5SP258(91123)	.	./.	./.	chr8:26045757	KI270733.1:176186	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
LINC00499	TRERF1	+/.	-/.	chr4:138402531	chr6:42262576	intron	intron	translocation/3'-3'	0	0	0	0	3473	low	.	.	.	.	.	ENSG00000251372.6	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
GLYATL1	.	+/.	./.	chr11:58919736	KI270733.1:176185	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166840.13	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262482	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
EBF2(344),RNA5SP258(91123)	.	./.	./.	chr8:26045757	GL000220.1:114251	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880798	chr19:40880815	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
EML1	EML1	+/.	+/.	chr14:99796187	chr14:99796198	intron	intron	duplication/ITD	0	0	0	1790	0	low	.	.	.	.	.	ENSG00000066629.18	ENSG00000066629.18	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FAM214A	AC009754.2	-/.	+/.	chr15:52679756	chr15:52679770	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000047346.12	ENSG00000287500.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AP001652.1	.	-/.	./.	chr11:58919736	GL000220.1:158222	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000255523.1	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
GLYATL1	.	+/.	./.	chr11:58919736	GL000220.1:114250	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166840.13	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AP001652.1	.	-/.	./.	chr11:58919736	GL000220.1:114250	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000255523.1	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
GLYATL1	.	+/.	./.	chr11:58919736	GL000220.1:158222	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166840.13	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
SLC35E4	FP236383.3	+/+	+/+	chr22:30636545	chr21:8442056	CDS	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000100036.13	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
GLYATL1	FP236383.3	+/.	+/.	chr11:58919736	chr21:8397818	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000166840.13	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP001652.1	FP236383.3	-/.	+/.	chr11:58919736	chr21:8397818	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000255523.1	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	chr5:103482858	chr15:45462788	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000226926.7	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01779(44712),U3(67653)	OPHN1	./.	-/.	chr1:116210953	chrX:67962334	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000079482.14	.	.	downstream	downstream	mismatches(1)	.	.	.
PLCE1	PLCE1	+/.	+/.	chr10:94255915	chr10:94255928	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000138193.16	ENSG00000138193.16	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
ZP4	UTRN(24892),AL023283.1(418619)	-/.	./.	chr1:237883665	chr6:144877926	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000116996.9	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
USH2A	SAPCD2P1(11260),ZNF735(12937)	-/.	./.	chr1:216245469	chr7:64194153	intron	intergenic	translocation	0	0	0	3	78	low	.	.	.	.	.	ENSG00000042781.14	.	.	.	upstream	upstream	low_entropy	.	.	.
GLYATL1	FP671120.4	+/.	+/.	chr11:58919736	chr21:8214784	intron	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000166840.13	ENSG00000278996.1	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC108734.3	TMEM154	-/.	-/.	chr3:180816272	chr4:152661294	intron	intron	translocation	0	0	0	23	99	low	.	.	.	.	.	ENSG00000285336.1	ENSG00000170006.12	.	.	downstream	upstream	low_entropy	.	.	.
ITGB1	RFX1	-/.	-/.	chr10:32888382	chr19:14006381	3'UTR	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000150093.20	ENSG00000132005.9	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02301	.	+/.	./.	chr14:82715515	KI270733.1:148270	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000258743.6	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AP001652.1	FP236383.3	-/.	+/.	chr11:58919736	chr21:8442048	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000255523.1	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(3368),FP236383.3(120342)	+/.	./.	chr2:32916556	chr21:8260301	intron	intergenic	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	5_8S_rRNA(2301),FP236383.3(121409)	+/.	./.	chr2:32916556	chr21:8259234	intron	intergenic	translocation	0	0	0	1606	6	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
EBF2(344),RNA5SP258(91123)	5_8S_rRNA(2081),FP236383.3(121629)	./.	./.	chr8:26045757	chr21:8259014	intergenic	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GATAD2B	LGR6	-/.	+/.	chr1:153792922	chr1:202208424	intron	intron	duplication/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000143614.10	ENSG00000133067.18	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1(44710),AC108865.1(119537)	ANGPT1	./.	-/.	chr4:186771432	chr8:107291889	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
GLYATL1	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr11:58919736	chr21:8259013	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000166840.13	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLPP4	PLPP4	+/.	+/.	chr10:120574174	chr10:120574184	intron	intron	duplication/ITD	0	0	0	65	65	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000203805.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EBF2(344),RNA5SP258(91123)	.	./.	./.	chr8:26045757	KI270733.1:131107	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3844),GPN2(7832)	./.	./.	chr1:26868243	chr1:26868300	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214886	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
GSG1L	TIAM1	-/.	-/.	chr16:27911257	chr21:31394712	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000169181.13	ENSG00000156299.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392805	chr1:90392814	intron	intron	duplication/ITD	0	0	0	334	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902257	chr4:94902266	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(15)	.	.	.
MXD4	FP236383.3(1401),FP236383.11(6127)	-/.	./.	chr4:2261627	chr21:8456193	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000123933.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	ADAMTSL2	+/.	+/.	chr2:32916556	chr9:133564006	intron	intron	translocation/5'-5'	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000197859.11	.	.	downstream	downstream	mismatches	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046187	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(15)	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626672	chrX:18626681	intron	intron	duplication/ITD	0	0	0	84	83	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(16),low_entropy(2)	.	.	.
TARS1	TARS1	+/.	+/.	chr5:33443312	chr5:33443323	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000113407.14	ENSG00000113407.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312078	chr11:22312093	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
LINC02620	MID1IP1(102282),RNU6-591P(172361)	-/.	./.	chr10:104479908	chrX:38908819	intron	intergenic	translocation	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046187	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(15)	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	KI270733.1:130719	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL139042.1(115516),RNGTT(51453)	DRAM1	./.	+/.	chr6:88558444	chr12:101929926	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000136048.14	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046187	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(15)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117366	chr10:113117379	intron	intron	duplication/ITD	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(2),low_entropy(3),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117373	chr10:113117382	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(16),low_entropy(10)	.	.	.
PNPT1	JCAD(47403),RNU6-598P(136672)	-/.	./.	chr2:55693519	chr10:30162897	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000138035.15	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RADIL	ABCC8	-/.	-/.	chr7:4819762	chr11:17476060	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157927.17	ENSG00000006071.15	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS2P18(22135),AC092573.1(17572)	RPS2P18(22199),AC092573.1(17508)	./.	./.	chr2:173320647	chr2:173320711	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AC109479.3	.	+/.	./.	chr5:179377620	GL000224.1:56057	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000253979.1	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396539	chr8:22396580	intron	intron	duplication/ITD	0	0	0	308	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC109479.3	MX2	+/.	+/.	chr5:179377621	chr21:41376615	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253979.1	ENSG00000183486.14	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093510.1(21825),MBLAC2(25715)	SPANXN4(33453),RN7SKP81(22192)	./.	./.	chr5:90432494	chrX:143068155	intergenic	intergenic	translocation	0	0	0	0	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL929472.1(10871),MANEAL(91)	ROBO1	./.	-/.	chr1:37793756	chr3:79598016	intergenic	intron	translocation	0	0	0	3	6	low	.	.	.	.	.	.	ENSG00000169855.20	.	.	upstream	upstream	mismatches(1)	.	.	.
APCDD1L-DT	APCDD1L-DT	+/.	+/.	chr20:58590219	chr20:58590228	intron	intron	duplication/ITD	0	0	0	21	10	low	.	.	.	.	.	ENSG00000231290.6	ENSG00000231290.6	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469905	chr7:26469946	intron	intron	duplication/ITD	0	0	0	48	48	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RADIL	DYM	-/.	-/.	chr7:4819761	chr18:49184267	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000157927.17	ENSG00000141627.14	.	.	downstream	downstream	mismatches(1)	.	.	.
CARMIL1	CR381653.2(152031),NCOR1P4(1258)	+/.	./.	chr6:25343856	chr21:9528676	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000079691.18	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC005524.1(58646),MAN1A2P1(4389)	SLC6A14	./.	+/.	chr19:28786423	chrX:116445508	intergenic	intron	translocation	0	0	0	1	687	low	.	.	.	.	.	.	ENSG00000268104.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8399947	intron	intron	translocation	0	0	0	1606	729	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:133239	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
MARS1	FP671120.4	+/.	+/.	chr12:57488235	chr21:8211703	exon	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000166986.15	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:160356	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
POM121L13P(41199),MTUS2(203)	AC016304.1(54229),TMCO5A(376607)	./.	./.	chr13:28820136	chr15:37545332	intergenic	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZDHHC11	KLRB1	-/.	-/.	chr5:844537	chr12:9594772	intron	3'UTR	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000188818.12	ENSG00000111796.4	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117371	chr10:113117380	intron	intron	duplication/ITD	0	0	0	266	0	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
RNU6-889P(6705),AL441943.2(45506)	RANBP10	./.	-/.	chr10:2104974	chr16:67737095	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000141084.11	.	.	downstream	downstream	mismatches(1)	.	.	.
NR5A1	FP236383.3	-/-	+/-	chr9:124507410	chr21:8441930	5'UTR	intron	translocation/5'-5'	0	0	0	0	46	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC021594.1	./.	+/.	chr2:240393940	chr18:79788654	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000266924.1	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618112	KI270733.1:178270	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479801	chr11:88092439	intron	intron	translocation	0	0	0	984	838	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates	.	.	.
DYM	.	-/.	./.	chr18:49060769	GL000220.1:116388	intron	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	ENSG00000141627.14	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176407	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158444	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8215006	intron	intron	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396380	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2302),FP236383.3(121408)	+/.	./.	chr2:32916556	chr21:8259235	intron	intergenic	translocation	0	0	0	1606	6	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8398040	intron	intron	translocation	0	0	0	1606	8	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683462	chr15:81683471	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
LINC00486	.	+/.	./.	chr2:32916559	GL000220.1:158255	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC02590(3049),RNU6-242P(44557)	LINC02590(3058),RNU6-242P(44548)	./.	./.	chr2:43046831	chr2:43046840	intergenic	intergenic	duplication/ITD	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(4)	.	.	.
USH2A	HAUS7	-/.	-/.	chr1:216352104	chrX:153492742	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000042781.14	ENSG00000213397.11	.	.	downstream	upstream	mismatches(1)	.	.	.
AL022154.1(56202),AL645638.1(22343)	AL022154.1(56241),AL645638.1(22304)	./.	./.	chrX:88886060	chrX:88886099	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CHRNB4	NKILA(41152),AL162291.1(141462)	-/.	./.	chr15:78672957	chr20:57753932	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000117971.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479908	intron	intron	duplication	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	same_gene	.	.	.
THOC3	AC025580.2	-/.	+/.	chr5:175967559	chr15:45462229	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000051596.10	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	chr5:177876243	chr15:45462229	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000170089.15	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC008269.1	LINC02663(164937),LINC02670(15725)	+/.	./.	chr2:206862123	chr10:10042997	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321.2	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL355674.1(96147),RORB-AS1(4826)	AL355674.1(96212),RORB-AS1(4761)	./.	./.	chr9:74480725	chr9:74480790	intergenic	intergenic	duplication/ITD	0	0	0	89	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
LINC02889	BX284632.1(7533),BMS1P13(3115)	-/.	./.	chr7:17457184	chr9:65825005	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236039.3	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC106795.1	AC106795.1	+/.	+/.	chr5:177876215	chr5:177876243	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000170089.15	ENSG00000170089.15	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262494	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
AC113430.1(4651)	AC025039.1(485228),MIR3924(223220)	./.	./.	chr5:53547	chr10:57081259	intergenic	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL606753.2(143090),LINC01735(192807)	AL606753.2(143119),LINC01735(192778)	./.	./.	chr1:208413757	chr1:208413786	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51922),RBMY2WP(38070)	./.	./.	chrY:22724736	chrY:22724781	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4)	.	.	.
AC092266.1(330442),LSINCT5(120126)	.	./.	./.	chr5:2592465	GL000220.1:158230	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	EFNB1(318124),PJA1(567)	+/.	./.	chr21:8399951	chrX:69160284	intron	intergenic	translocation	0	0	0	729	0	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3434),ELMOD1(754)	AP001823.1(3533),ELMOD1(655)	./.	./.	chr11:107590337	chr11:107590436	intergenic	intergenic	duplication/ITD	0	0	0	683	646	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(14)	.	.	.
LRRFIP1	LRRFIP1	+/.	+/.	chr2:237784949	chr2:237784963	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000124831.19	ENSG00000124831.19	.	.	upstream	downstream	duplicates(11),low_entropy(1)	.	.	.
CCDC42	PIEZO2(135516),AP005139.1(41185)	-/.	./.	chr17:8739382	chr18:11285085	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000161973.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	NFIX	./.	+/.	chr1:47437186	chr19:13080069	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000008441.18	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262483	chr6:42262492	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(4)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	chr5:103482858	chr15:45462159	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000226926.7	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NXPH3	FP671120.4(1407),FP671120.10(6301)	+/.	./.	chr17:49576096	chr21:8229053	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182575.8	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PTPRN2	.	-/.	./.	chr7:158570584	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000155093.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FSTL4	INTS9	-/.	-/.	chr5:133448694	chr8:28870755	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053108.17	ENSG00000104299.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	chr5:177876243	chr15:45462157	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000170089.15	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC093627.22	AC025366.1(57830),AP005357.1(76639)	-/.	./.	chr7:117610	chr8:110690224	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683461	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
STMN4(23462),TRIM35(3004)	SVIL(151863),AL353093.1(2210)	./.	./.	chr8:27281882	chr10:29888822	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22763),NRXN3(87332)	./.	./.	chr14:78082946	chr14:78083041	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),low_entropy(12)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	chr5:103482858	chr15:45462588	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000226926.7	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FREM1	FREM1	-/.	-/.	chr9:14774512	chr9:14774527	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000164946.20	ENSG00000164946.20	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC021151.1(42348),SH3RF1(40972)	FKBP1A	./.	-/.	chr4:169053287	chr20:1392765	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000088832.18	.	.	upstream	upstream	mismatches(1)	.	.	.
WDR62(1882),OVOL3(4161)	.	./.	./.	chr19:36106990	KI270733.1:176441	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	chr2:237784949	chr15:45462158	intron	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	ENSG00000124831.19	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	chr5:175967559	chr15:45462429	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000051596.10	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23080),AC108865.1(141167)	CRTAC1	./.	-/.	chr4:186749802	chr10:98026059	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000095713.14	.	.	upstream	upstream	mismatches(1)	.	.	.
BBS9	TDP1(16955),KCNK13(275)	+/.	./.	chr7:33410882	chr14:90061719	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000122507.21	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
PDCD4	TAPBPL	+/.	+/.	chr10:110896212	chr12:6451853	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150593.18	ENSG00000139192.12	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	chr5:177876243	chr15:45462429	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000170089.15	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KRT18P55	LINC00486	-/-	+/-	chr17:28307132	chr2:32916551	exon	intron	translocation/5'-5'	0	0	0	0	1606	low	.	.	.	.	.	ENSG00000265480.5	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	chr3:95431525	chr21:8258619	intergenic	intergenic	translocation	0	0	0	5	77	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117458	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(22),low_entropy(15)	.	.	.
TOGARAM2	AC093627.22	+/.	-/.	chr2:29042538	chr7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000189350.13	ENSG00000287883.1	.	.	upstream	upstream	mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	chr5:175967559	chr15:45463199	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000051596.10	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	chr5:177876243	chr15:45463199	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000170089.15	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC025580.2	MACROD2	+/.	+/.	chr15:45463199	chr20:15209116	intron	intron	translocation/5'-5'	0	0	0	0	12	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000172264.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DGKK	DGKK	-/.	-/.	chrX:50405524	chrX:50405558	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000274588.2	ENSG00000274588.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	chr2:237784949	chr15:45463200	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000124831.19	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CCDC187(138),DKFZP434A062(15264)	PDCD4	./.	+/.	chr9:136307039	chr10:110896212	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150593.18	.	.	downstream	upstream	mismatches(1)	.	.	.
KIF13B	LRRC25(7376),SSBP4(13866)	-/.	./.	chr8:29241510	chr19:18404998	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000197892.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL358053.1(206649),AL591644.1(221032)	PPM1H	./.	-/.	chr9:1756752	chr12:62717452	intergenic	intron	translocation	0	0	0	40	0	low	.	.	.	.	.	.	ENSG00000111110.12	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091607.2	TSHZ2	+/.	+/.	chr3:156535474	chr20:53094116	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287916.1	ENSG00000182463.16	.	.	downstream	upstream	mismatches(1)	.	.	.
NEURL1	ABCC8	+/.	-/.	chr10:103571846	chr11:17476060	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107954.10	ENSG00000006071.15	.	.	downstream	downstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	chr1:208413786	chr15:45462788	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	chr1:208413786	chr15:45462588	intergenic	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC025580.2	MACROD2	+/.	+/.	chr15:45462586	chr20:15209116	intron	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000172264.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RFX8	NCOR2	-/.	-/.	chr2:101474322	chr12:124481703	5'UTR	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000196460.14	ENSG00000196498.13	.	.	downstream	downstream	mismatches(1)	.	.	.
ILKAP	FP236383.11(1894),FP236383.6(562)	-/.	./.	chr2:238203140	chr21:8464692	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SAPCD2P1(11260),ZNF735(12937)	LINC00536	./.	-/.	chr7:64194153	chr8:116313432	intergenic	intron	translocation	0	0	0	78	3	low	.	.	.	.	.	.	ENSG00000249917.3	.	.	upstream	downstream	low_entropy	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	chr2:237784949	chr15:45462587	intron	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	ENSG00000124831.19	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NCOA5LP(16498),CNEP1R1(39182)	NCOA5LP(16513),CNEP1R1(39167)	./.	./.	chr16:49985228	chr16:49985243	intergenic	intergenic	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(18),low_entropy(2)	.	.	.
AL357513.1(53848),TBC1D32(180171)	KDM6A	./.	+/.	chr6:120899323	chrX:45003866	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000147050.16	.	.	downstream	upstream	mismatches(1)	.	.	.
AP007216.1(6233),AP007216.2(4411)	.	./.	./.	chr11:69917227	GL000220.1:160360	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143076	chr11:82143175	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TMCC3(113685),KRT19P2(69905)	TMCC3(113771),KRT19P2(69819)	./.	./.	chr12:94764242	chr12:94764328	intergenic	intergenic	duplication/ITD	0	0	0	0	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(17),low_entropy(2)	.	.	.
LSAMP	LSAMP	-/.	-/.	chr3:116642647	chr3:116642660	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000185565.12	ENSG00000185565.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DDX6P2(70759),AL445207.1(54961)	FXNP1(22765),NRXN3(87330)	./.	./.	chr13:86348021	chr14:78083043	intergenic	intergenic	translocation	0	0	0	3	640	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	Z83818.2	+/.	-/.	chr8:22396553	chrX:87716930	intron	intron	translocation	0	0	0	308	14	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000282914.1	.	.	upstream	upstream	mismatches(1)	.	.	.
TAOK1	KIAA1549L	+/+	+/-	chr17:29390580	chr11:33557935	5'UTR	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000160551.12	ENSG00000110427.17	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM217B(5313),CDH26(4430)	FAM217B(5322),CDH26(4421)	./.	./.	chr20:59953993	chr20:59954002	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC01877	TRERF1	+/.	-/.	chr2:199744425	chr6:42262603	intron	intron	translocation	0	0	0	0	1257	low	.	.	.	.	.	ENSG00000238217.6	ENSG00000124496.12	.	.	downstream	downstream	mismatches(1)	.	.	.
ITM2B	FP671120.4	+/+	+/+	chr13:48234069	chr21:8214783	exon/splice-site	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000136156.15	ENSG00000278996.1	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
ITM2B	FP236383.3	+/+	+/+	chr13:48234069	chr21:8442047	exon/splice-site	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000136156.15	ENSG00000280441.3	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419186	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ITM2B	5_8S_rRNA(2079),FP236383.3(121631)	+/+	./+	chr13:48234069	chr21:8259012	exon/splice-site	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000136156.15	.	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
ITM2B	.	+/+	./+	chr13:48234069	KI270733.1:131105	exon/splice-site	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136156.15	.	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(1)	.	.	.
ZFPM2	ANKS1B	+/.	-/.	chr8:104827531	chr12:99384121	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000185046.18	.	.	downstream	downstream	mismatches(1)	.	.	.
ROBO1	BNC2(4455),AL162725.2(42213)	-/.	./.	chr3:79598015	chr9:16875298	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855.20	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	AC226101.1	+/.	+/.	chr2:32916565	chr2:110611070	intron	exon	deletion	0	0	0	1588	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000231536.1	.	.	downstream	upstream	mismatches	.	.	.
ITM2B	.	+/+	./+	chr13:48234069	GL000220.1:114249	exon/splice-site	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136156.15	.	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(1)	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479906	intron	intron	translocation/3'-3'	0	0	0	1	855	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
ITM2B	.	+/+	./+	chr13:48234069	GL000220.1:158221	exon/splice-site	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136156.15	.	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(1)	.	.	.
TSHZ3	TSHZ3	-/.	-/.	chr19:31183173	chr19:31183246	intron	intron	duplication/ITD	0	0	0	64	10	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000121297.8	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02885(2313),ISX(60961)	LINC02885(2324),ISX(60950)	./.	./.	chr22:35005175	chr22:35005186	intergenic	intergenic	duplication/ITD	0	0	0	43	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(9)	.	.	.
RBBP6	CR392039.1(648),CR392039.3(8418)	+/.	./.	chr16:24540401	chr21:8988078	5'UTR	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000122257.20	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138628	chrX:31138639	intron	intron	duplication/ITD	0	0	0	95	0	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
SFN(3785),GPN2(7891)	SFN(3842),GPN2(7834)	./.	./.	chr1:26868241	chr1:26868298	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
HRAS	AC016304.1(54225),TMCO5A(376611)	-/.	./.	chr11:535338	chr15:37545328	5'UTR	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000174775.17	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51917),RBMY2WP(38075)	./.	./.	chrY:22724736	chrY:22724776	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6)	.	.	.
USP13	AC016304.1(54229),TMCO5A(376607)	+/.	./.	chr3:179653420	chr15:37545332	intron	intergenic	translocation	0	0	0	1	25	low	.	.	.	.	.	ENSG00000058056.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SOX1-OT	AC016304.1(54229),TMCO5A(376607)	+/.	./.	chr13:112066935	chr15:37545332	intron	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000224243.2	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ITM2B	FP236383.3	+/+	+/+	chr13:48234069	chr21:8397817	exon/splice-site	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000136156.15	ENSG00000280441.3	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC016304.1(54228),TMCO5A(376608)	USP14	./.	+/.	chr15:37545331	chr18:158829	intergenic	intron	translocation	0	0	0	25	0	low	.	.	.	.	.	.	ENSG00000101557.15	.	.	downstream	upstream	mismatches(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16362),AC016134.1(9506)	./.	./.	chr15:41599884	chr15:41599951	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FAM171A1	AC016304.1(54229),TMCO5A(376607)	-/-	./-	chr10:15371059	chr15:37545332	5'UTR	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000148468.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	C12orf45	+/.	+/.	chr10:113117387	chr12:105046194	intron	intron	translocation	0	0	0	266	1664	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000151131.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	WASF4P(2482),ZNF81(29631)	./.	./.	chr4:133867492	chrX:47807271	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131108	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
LEMD1-DT	ANGPT1	+/.	-/.	chr1:205457582	chr8:107291889	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224717.1	ENSG00000154188.10	.	.	downstream	upstream	mismatches	.	.	.
AC016304.1(54228),TMCO5A(376608)	SIX5	./.	-/.	chr15:37545331	chr19:45768819	intergenic	CDS	translocation	0	0	0	25	0	low	.	.	.	.	.	.	ENSG00000177045.10	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565292	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
GPRIN1(8931),SNCB(995)	.	./.	./.	chr5:176619087	GL000220.1:114264	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),uninteresting_contigs(1)	.	.	.
AC074212.1	AC016304.1(54228),TMCO5A(376608)	+/+	./-	chr19:45768819	chr15:37545331	exon	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000259605.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PDP1	KDM4B	+/.	+/.	chr8:93917357	chr19:5090391	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000164951.16	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02086	LINC02086	+/.	+/.	chr17:48677968	chr17:48677980	intron	intron	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	ENSG00000244649.5	ENSG00000244649.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565296	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
DHFR	RPS2P6(21879),AC091305.1(36626)	-/.	./.	chr5:80651216	chr18:70453004	intron	intergenic	translocation	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51929),RBMY2WP(38063)	./.	./.	chrY:22724736	chrY:22724788	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
C11orf95	KDM4B	-/-	+/+	chr11:63768668	chr19:5090391	5'UTR	intron	translocation	0	0	0	0	19	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000188070.9	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117366	chr10:113117433	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RGS11	KDM4B	-/-	+/+	chr16:275892	chr19:5090393	CDS	intron	translocation	0	0	0	0	19	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000076344.16	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
MTFR1	MTFR1	+/.	+/.	chr8:65662005	chr8:65662018	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000066855.16	ENSG00000066855.16	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
SLC9A5	KDM4B	+/.	+/.	chr16:67248963	chr19:5090391	5'UTR	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000135740.17	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
LBH	LBH	+/.	+/.	chr2:30304937	chr2:30304952	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000213626.13	ENSG00000213626.13	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
L29074.2	.	+/+	./+	chrX:147911827	GL000220.1:160360	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000274086.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SYDE2(865),C1orf52(48072)	AC027369.4	./.	+/.	chr1:85201881	chr11:48893564	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000254920.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AC016304.1(54226),TMCO5A(376610)	AL592156.1(90988),BX842568.3(236)	./.	./.	chr15:37545329	chrX:36957677	intergenic	intergenic	translocation	0	0	0	25	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916559	chr21:8217231	intron	intron	translocation/5'-5'	0	0	0	1606	34	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
AL139383.1	5_8S_rRNA(1687),FP236383.3(122023)	-/.	./.	chr13:33517098	chr21:8258620	intron	intergenic	translocation	0	0	0	9	77	low	.	.	.	.	.	ENSG00000230490.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046189	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(13),merge_adjacent	.	.	.
AL138773.1(196501),HSP90AB7P(215690)	AL138773.1(196534),HSP90AB7P(215657)	./.	./.	chr10:9506273	chr10:9506306	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SOX1-OT	KDM4B	+/.	+/.	chr13:112066935	chr19:5090391	intron	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000224243.2	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AL033504.1	AL033504.1	+/.	+/.	chr6:147790733	chr6:147790748	intron	intron	duplication/ITD	0	0	0	14	1	low	.	.	.	.	.	ENSG00000227681.5	ENSG00000227681.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01791	LINC01791	+/.	+/.	chr19:31183173	chr19:31183227	intron	intron	duplication/ITD	0	0	0	64	64	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000267777.2	.	.	upstream	downstream	duplicates(47),low_entropy(7)	.	.	.
USP14	KDM4B	+/.	+/.	chr18:158829	chr19:5090392	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000101557.15	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3438),ELMOD1(750)	AP001823.1(3447),ELMOD1(741)	./.	./.	chr11:107590341	chr11:107590350	intergenic	intergenic	duplication/ITD	0	0	0	685	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	CHST11	-/.	+/.	chr10:104479815	chr12:104706484	intron	intron	translocation/5'-5'	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000171310.11	.	.	upstream	downstream	mismatches(1)	.	.	.
UBN2	KDM4B	+/+	+/+	chr7:139231648	chr19:5090391	CDS	intron	translocation	0	0	0	0	19	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000157741.15	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
CCND1	KDM4B	+/.	+/.	chr11:69648771	chr19:5090391	intron	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000110092.4	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	ABLIM2	+/.	-/.	chr2:32916556	chr4:8143171	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000163995.21	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262503	chr6:42262512	intron	intron	duplication/ITD	0	0	0	3754	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU6-440P(65122),AC069148.1(40105)	.	./.	./.	chr2:201992665	GL000220.1:160360	intergenic	intergenic	translocation	0	0	0	2	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
KDM4B	SIX5	+/.	-/.	chr19:5090392	chr19:45768819	intron	CDS	duplication/3'-3'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000127663.15	ENSG00000177045.10	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683464	chr15:81683473	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
BOLA3	KDM4B	-/.	+/.	chr2:74147765	chr19:5090391	exon	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000163170.12	ENSG00000127663.15	.	.	downstream	upstream	mismatches(1)	.	.	.
STPG2	GRID1	-/.	-/.	chr4:97739796	chr10:85762744	intron	intron	translocation	0	1	0	0	0	low	.	.	.	.	.	ENSG00000163116.10	ENSG00000182771.19	.	.	downstream	upstream	min_support	.	.	.
AC104530.1(13436),AC005258.2(5945)	CNGA2(85750),MAGEA4-AS1(73377)	./.	./.	chr19:2309217	chrX:151831054	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXA3(2577),IRF2BP1(7234)	AL592156.1(90988),BX842568.3(236)	./.	./.	chr19:45876374	chrX:36957677	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021203	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864054	chr9:106864063	intron	intron	duplication/ITD	0	0	0	87	86	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(9),low_entropy(6)	.	.	.
KCNMB2	AL050402.1(52847),AL133456.1(50932)	+/.	./.	chr3:178655096	chr22:27512907	intron	intergenic	translocation	0	0	0	13	1	low	.	.	.	.	.	ENSG00000197584.12	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392891	chr11:88092439	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916462	chr21:8214784	intron	intron	translocation	0	0	0	914	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
AC009754.2	FAM214A	+/.	-/.	chr15:52679756	chr15:52679770	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000287500.1	ENSG00000047346.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
C11orf95	FOXA3(2578),IRF2BP1(7233)	-/-	./+	chr11:63768664	chr19:45876375	5'UTR	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000188070.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104136.1	OPHN1	-/.	-/.	chr4:136004548	chrX:68084366	exon	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000251492.1	ENSG00000079482.14	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC01322(194327),MTND4P17(119175)	FXNP1(22772),NRXN3(87323)	./.	./.	chr3:166040846	chr14:78083050	intergenic	intergenic	translocation	0	0	0	0	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SIX5	FOXA3(2577),IRF2BP1(7234)	-/-	./-	chr19:45768821	chr19:45876374	CDS	intergenic	deletion/read-through	0	0	0	0	5	low	.	.	Homeodomain(100%),Transcriptional_regulator__SIX1__N-terminal_SD_domain(100%)|	.	.	ENSG00000177045.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP20DC	MTATP6P24(592),NUBP1(17898)	-/.	./.	chr3:59049800	chr16:10725888	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC074212.1	FOXA3(2577),IRF2BP1(7234)	+/+	./+	chr19:45768821	chr19:45876374	exon	intergenic	deletion/read-through	0	0	0	0	5	low	.	.	.	.	.	ENSG00000259605.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL353611.2(21963),OLFM1(57605)	CNIH1	./.	-/.	chr9:135017817	chr14:54440920	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100528.12	.	.	downstream	upstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262581	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	RPL12P4(19716),LINC01440(314042)	-/.	./.	chr7:117610	chr20:55094856	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883.1	.	.	.	upstream	downstream	mismatches(2)	.	.	.
TNRC18	AC016304.1(54229),TMCO5A(376607)	-/-	./-	chr7:5374335	chr15:37545332	CDS	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000182095.14	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158224	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
CBLB	AL353595.1	-/.	+/.	chr3:105786074	chr9:11645401	intron	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000114423.23	ENSG00000285784.1	.	.	downstream	upstream	mismatches(1)	.	.	.
TPCN1	FP236383.3	+/.	+/.	chr12:113295640	chr21:8442056	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000186815.13	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
RGS11	AC016304.1(54227),TMCO5A(376609)	-/-	./-	chr16:275892	chr15:37545330	CDS	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000076344.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046189	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(13)	.	.	.
ARHGAP26	ARHGAP26	+/.	+/.	chr5:142949166	chr5:142949181	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000145819.18	ENSG00000145819.18	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
GRM7	GRM7	+/.	+/.	chr3:7291490	chr3:7291505	intron	intron	duplication/ITD	0	0	0	27	27	low	.	.	.	.	.	ENSG00000196277.16	ENSG00000196277.16	.	.	upstream	downstream	low_entropy(5)	.	.	.
LINC00498	LINC00498	-/.	-/.	chr4:138299704	chr4:138299773	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000248397.1	ENSG00000248397.1	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734410	chr6:46734486	intron	intron	duplication/ITD	0	0	0	49	49	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IGF2	.	-/.	./.	chr11:2138068	KI270733.1:130988	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000167244.21	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
THEMIS	THEMIS	-/.	-/.	chr6:127729141	chr6:127729156	intron	intron	duplication/ITD	0	0	0	7	1	low	.	.	.	.	.	ENSG00000172673.11	ENSG00000172673.11	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
INTS5(552),C11orf98(8963),LBHD1(8963)	EML1	./.	+/.	chr11:62653854	chr14:99796199	intergenic	intron	translocation	0	0	0	105	1790	low	.	.	.	.	.	.	ENSG00000066629.18	.	.	downstream	upstream	mismatches(1)	.	.	.
PCLO	PCLO	-/.	-/.	chr7:83000269	chr7:83000284	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000186472.20	ENSG00000186472.20	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
HTR1E(42954),AL138827.1(10523)	MMP2	./.	+/.	chr6:87059633	chr16:55433378	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000087245.13	.	.	downstream	downstream	mismatches(1)	.	.	.
RASGEF1C	PPP2CB	-/.	-/.	chr5:180120728	chr8:30799641	intron	CDS	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000146090.16	ENSG00000104695.13	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02554	AL050402.1(52846),AL133456.1(50933)	+/.	./.	chr22:27316602	chr22:27512906	intron	intergenic	duplication	0	0	0	13	1	low	.	.	.	.	.	ENSG00000226741.2	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380610	chr20:36380619	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
H3-4	CDK5RAP2	-/-	-/-	chr1:228424931	chr9:120555448	CDS	intron	translocation	0	0	0	0	0	low	.	.	Core_histone_H2A/H2B/H3/H4(99%)|Centrosomin_N-terminal_motif_1(91%)	.	.	ENSG00000168148.4	ENSG00000136861.18	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF496	GTPBP3	-/.	+/.	chr1:247323510	chr19:17341750	intron	3'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162714.12	ENSG00000130299.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091825.3(67145),SPRY4(74895)	AL133346.1	./.	+/.	chr5:142235532	chr6:132037651	intergenic	intron	translocation	0	0	0	3	4	low	.	.	.	.	.	.	ENSG00000227220.1	.	.	upstream	downstream	mismatches(1)	.	.	.
EXOC4	NCOA5LP(16498),CNEP1R1(39182)	+/.	./.	chr7:133971366	chr16:49985228	intron	intergenic	translocation	0	0	0	5	20	low	.	.	.	.	.	ENSG00000131558.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091825.3(67144),SPRY4(74896)	COLEC10	./.	+/.	chr5:142235531	chr8:119070571	intergenic	intron	translocation	0	0	0	3	3	low	.	.	.	.	.	.	ENSG00000184374.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AP000821.1	AC016304.1(54226),TMCO5A(376610)	-/.	./.	chr11:126101057	chr15:37545329	exon	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000261257.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC091825.3(67144),SPRY4(74896)	PHF21B(87251),NUP50-DT(35764)	./.	./.	chr5:142235531	chr22:45097256	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KIF7	.	-/.	./.	chr15:89645428	KI270733.1:145500	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166813.16	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	AP001823.1(3455),ELMOD1(733)	./.	./.	chr10:100568395	chr11:107590358	intergenic	intergenic	translocation	0	0	0	0	685	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143170	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
PRKCA	AL354897.1	+/+	+/+	chr17:66302744	chr9:85169822	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000154229.12	ENSG00000285556.1	.	.	downstream	upstream	mismatches(1)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143172	intergenic	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3455),ELMOD1(733)	AP001823.1(3464),ELMOD1(724)	./.	./.	chr11:107590358	chr11:107590367	intergenic	intergenic	duplication/ITD	0	0	0	685	683	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	AP003390.1(4481),AP001994.1(77200)	./.	./.	chr10:100568395	chr11:119744104	intergenic	intergenic	translocation	0	0	0	0	1441	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02590(3063),RNU6-242P(44543)	LINC02590(3072),RNU6-242P(44534)	./.	./.	chr2:43046845	chr2:43046854	intergenic	intergenic	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC00486	NUTF2	+/.	+/.	chr2:32916556	chr16:67863466	intron	intron	translocation/5'-5'	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000102898.12	.	.	downstream	downstream	mismatches	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143154	intergenic	intron	translocation	0	0	0	0	748	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797749	chr17:57797758	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
NOS1AP	LMNTD1(20091),RN7SKP262(110617)	+/.	./.	chr1:162261519	chr12:25668670	intron	intergenic	translocation	0	0	0	59	10	low	.	.	.	.	.	ENSG00000198929.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143154	intron	intron	duplication/ITD	0	0	0	654	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(10)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AC008014.1(15862),AC079906.1(77858)	./.	./.	chr1:188690471	chr12:46892646	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143156	intergenic	intron	translocation	0	0	0	0	748	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143156	intron	intron	duplication/ITD	0	0	0	654	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
TMEM154	CDH13	-/.	+/.	chr4:152661286	chr16:83134535	intron	intron	translocation	0	0	0	99	57	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000140945.17	.	.	upstream	upstream	low_entropy	.	.	.
HIF1AN(8397),Metazoa_SRP(98300)	MIR4300HG	./.	-/.	chr10:100568395	chr11:82143160	intergenic	intron	translocation	0	0	0	0	748	low	.	.	.	.	.	.	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143160	intron	intron	duplication/ITD	0	0	0	654	748	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(2)	.	.	.
ARMH3	ARMH3	-/.	-/.	chr10:101944268	chr10:101944328	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000120029.13	ENSG00000120029.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143164	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
AP001823.1(3433),ELMOD1(755)	AP001823.1(3532),ELMOD1(656)	./.	./.	chr11:107590336	chr11:107590435	intergenic	intergenic	duplication/ITD	0	0	0	683	646	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
STPG2(33766),AC019077.1(74446)	AP000821.1	./.	-/.	chr4:98177242	chr11:126101058	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261257.1	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU1-154P(715),AC239860.2(27390)	RNU1-154P(726),AC239860.2(27379)	./.	./.	chr1:145432408	chr1:145432419	intergenic	intergenic	duplication/ITD	0	0	0	188	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PLPP4	PLPP4	+/.	+/.	chr10:120537988	chr10:120538050	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000203805.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC012085.1(14957),CRADD(20832)	AC012085.1(15004),CRADD(20785)	./.	./.	chr12:93656543	chr12:93656590	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
AC105180.2(10848),ZFAT(76453)	AC007846.1	./.	+/.	chr8:134401335	chr17:5902814	intergenic	intron	translocation	1	0	0	120	0	low	.	.	.	.	.	.	ENSG00000284837.1	.	.	downstream	downstream	duplicates(2),min_support	.	.	.
UBE2W	FP236383.3	-/.	+/.	chr8:73820101	chr21:8400368	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380601	chr20:36380609	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL034405.1	AL034405.1	-/.	-/.	chrX:129952791	chrX:129952854	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000235189.2	ENSG00000235189.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01606	LINC01606	+/.	+/.	chr8:57223622	chr8:57223673	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000253301.6	ENSG00000253301.6	.	.	upstream	downstream	duplicates(16),low_entropy(3)	.	.	.
AL020994.1	AL050402.1(52844),AL133456.1(50935)	-/.	./.	chr22:27316602	chr22:27512904	intron	intergenic	duplication	0	0	0	13	1	low	.	.	.	.	.	ENSG00000223726.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SPRED3	SPRYD7P1(46859),FGF16(19211)	+/.	./.	chr19:38390420	chrX:77428178	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000188766.12	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MARCHF3	FP671120.4	-/.	+/.	chr5:126930649	chr21:8214800	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000173926.6	ENSG00000278996.1	.	.	upstream	upstream	homopolymer(1)	.	.	.
SPANXD(94026),MAGEC3(45551)	SPANXD(94036),MAGEC3(45541)	./.	./.	chrX:141792765	chrX:141792775	intergenic	intergenic	duplication/ITD	0	0	0	62	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC044798.3	AC044798.3	-/.	-/.	chr16:49155816	chr16:49155861	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000287469.1	ENSG00000287469.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565363	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(6),low_entropy(12)	.	.	.
H4-16	.	-/.	./.	chr12:14769961	GL000220.1:110004	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197837.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SPANXD(94024),MAGEC3(45553)	SPANXD(94034),MAGEC3(45543)	./.	./.	chrX:141792763	chrX:141792773	intergenic	intergenic	duplication/ITD	0	0	0	62	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
SPANXD(94029),MAGEC3(45548)	SPANXD(94038),MAGEC3(45539)	./.	./.	chrX:141792768	chrX:141792777	intergenic	intergenic	duplication/ITD	0	0	0	62	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TSHZ3	LINC01791	-/.	+/.	chr19:31183173	chr19:31183233	intron	intron	duplication/5'-5'	0	0	0	64	64	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000267777.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01791	LINC01791	+/.	+/.	chr19:31183173	chr19:31183233	intron	intron	duplication/ITD	0	0	0	64	64	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000267777.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	POU6F2(12345),AC011290.1(40206)	./.	./.	chr7:39505425	chr7:39505440	intergenic	intergenic	duplication/ITD	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(18),low_entropy(5)	.	.	.
SLC39A14	Z83818.2	+/.	-/.	chr8:22396555	chrX:87716930	intron	intron	translocation	0	0	0	308	14	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000282914.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565301	chr15:81565310	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
Z83818.2	Z83818.2	-/.	-/.	chrX:87716930	chrX:87716945	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000282914.1	ENSG00000282914.1	.	.	upstream	downstream	duplicates(11),low_entropy(3)	.	.	.
SLC39A14	Z83818.2	+/.	-/.	chr8:22396551	chrX:87716930	intron	intron	translocation	0	0	0	308	14	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000282914.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01438(23195),MIR297(40043)	AP001599.1	./.	+/.	chr4:110820539	chr21:26914103	intergenic	intron	translocation	0	0	0	1	15	low	.	.	.	.	.	.	ENSG00000223563.1	.	.	upstream	downstream	mismatches(1)	.	.	.
PLD5(20075),AC099785.1(126368)	PLD5(20088),AC099785.1(126355)	./.	./.	chr1:242544772	chr1:242544785	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
SELENOK(87724),AC115282.2(54302)	SELENOK(87759),AC115282.2(54267)	./.	./.	chr3:53979686	chr3:53979721	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
OTX2P1(77471),PCSK5(88598)	Z83818.2	./.	-/.	chr9:75802046	chrX:87716930	intergenic	intron	translocation	0	0	0	24	14	low	.	.	.	.	.	.	ENSG00000282914.1	.	.	downstream	upstream	mismatches(1)	.	.	.
FGFR2(17),AC009988.1(16950)	LINC01495	./.	-/.	chr10:121598475	chr11:22480925	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255323.6	.	.	upstream	upstream	mismatches(1)	.	.	.
CANT1	.	-/-	./+	chr17:78995148	KI270733.1:176182	CDS	intergenic	translocation	0	0	0	8	.	low	.	.	Apyrase(42%)|	.	.	ENSG00000171302.17	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
OTX2P1(77473),PCSK5(88596)	Z83818.2	./.	-/.	chr9:75802048	chrX:87716930	intergenic	intron	translocation	0	0	0	24	14	low	.	.	.	.	.	.	ENSG00000282914.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565302	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
OTX2P1(77475),PCSK5(88594)	Z83818.2	./.	-/.	chr9:75802050	chrX:87716930	intergenic	intron	translocation	0	0	0	24	14	low	.	.	.	.	.	.	ENSG00000282914.1	.	.	downstream	upstream	mismatches(1)	.	.	.
OR4F5(12222),AL627309.1(5488)	ZBTB44	./.	-/.	chr1:83807	chr11:130314625	intergenic	5'UTR	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000196323.14	.	.	upstream	downstream	mismatches(1)	.	.	.
C2orf83	C2orf83	-/.	-/.	chr2:227643250	chr2:227643287	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000042304.13	ENSG00000042304.13	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC124947.1	AC005921.1(11334),WFIKKN2(25665)	-/.	./.	chr12:93375492	chr17:50808985	intron	intergenic	translocation	0	0	0	30	0	low	.	.	.	.	.	ENSG00000257252.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261477	chr1:162261486	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TPTE2P1	RELB	-/+	+/+	chr13:24931821	chr19:45037406	intron	CDS/splice-site	translocation/3'-3'	0	0	0	5	0	low	.	.	|RelB_transactivation_domain(71%)	.	.	ENSG00000253771.6	ENSG00000104856.14	.	.	downstream	upstream	mismatches(1)	.	.	.
VCAM1(126124),EXTL2(7203)	VCAM1(126163),EXTL2(7164)	./.	./.	chr1:100865169	chr1:100865208	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
HIVEP3	TYRO3(16338),AC016134.1(9530)	-/.	./.	chr1:41897981	chr15:41599927	intron	intergenic	translocation	0	0	0	2	187	low	.	.	.	.	.	ENSG00000127124.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2-AS1	HDAC7	-/.	-/.	chr3:178655140	chr12:47810805	intron	intron	translocation	0	0	0	13	8	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000061273.18	.	.	downstream	upstream	duplicates(1)	.	.	.
PLCB4	FP236383.3	+/.	+/.	chr20:9262355	chr21:8444255	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000101333.18	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565298	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
OTX2P1(77479),PCSK5(88590)	Z83818.2	./.	-/.	chr9:75802054	chrX:87716930	intergenic	intron	translocation	0	0	0	24	14	low	.	.	.	.	.	.	ENSG00000282914.1	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	FP671120.4	-/.	+/.	chr5:80650924	chr21:8216865	intron	intron	translocation/3'-3'	0	0	0	12	5	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046191	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(19),low_entropy(1)	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479907	intron	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
DZIP1	DZIP1	-/.	-/.	chr13:95637599	chr13:95637646	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000134874.18	ENSG00000134874.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC245297.1	SLC39A14	-/.	+/.	chr1:149319443	chr8:22396555	intron	intron	translocation/3'-3'	0	0	0	14	308	low	.	.	.	.	.	ENSG00000215861.6	ENSG00000104635.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC245297.1	AC245297.1	-/.	-/.	chr1:149319385	chr1:149319443	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000215861.6	ENSG00000215861.6	.	.	upstream	downstream	duplicates(11),low_entropy(3)	.	.	.
MT-RNR2	.	+/.	./.	chrM:1791	KI270733.1:175800	exon	intergenic	translocation	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC245297.1	SLC39A14	-/.	+/.	chr1:149319443	chr8:22396553	intron	intron	translocation/3'-3'	0	0	0	14	308	low	.	.	.	.	.	ENSG00000215861.6	ENSG00000104635.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025839.1(41850),MIR1302-7(82183)	EEF1A2	./.	-/.	chr8:141704059	chr20:63495978	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101210.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AC245297.1	SLC39A14	-/.	+/.	chr1:149319443	chr8:22396551	intron	intron	translocation/3'-3'	0	0	0	14	308	low	.	.	.	.	.	ENSG00000215861.6	ENSG00000104635.15	.	.	downstream	upstream	mismatches(1)	.	.	.
AC245297.1	OTX2P1(77471),PCSK5(88598)	-/.	./.	chr1:149319443	chr9:75802046	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000215861.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PRDM1	.	+/+	./+	chr6:106098661	GL000220.1:158230	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC245297.1	OTX2P1(77475),PCSK5(88594)	-/.	./.	chr1:149319443	chr9:75802050	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000215861.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31187740	chrX:31187749	intron	intron	duplication/ITD	0	0	0	73	73	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC245297.1	OTX2P1(77477),PCSK5(88592)	-/.	./.	chr1:149319443	chr9:75802052	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000215861.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	SLC39A14	./.	+/.	chr7:39505425	chr8:22396559	intergenic	intron	translocation	0	0	0	23	308	low	.	.	.	.	.	.	ENSG00000104635.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AC087854.1	FP236383.11(2064),FP236383.6(392)	-/.	./.	chr8:22486063	chr21:8464862	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251034.2	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02615	LINC02615	+/.	+/.	chr4:128302730	chr4:128302794	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000251432.7	ENSG00000251432.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
PDE4DIP	SLC39A14	+/.	+/.	chr1:148810794	chr8:22396555	intron	intron	translocation/3'-3'	0	0	0	14	308	low	.	.	.	.	.	ENSG00000178104.19	ENSG00000104635.15	.	.	upstream	upstream	mismatches(1)	.	.	.
PDE4DIP	SLC39A14	+/.	+/.	chr1:148810794	chr8:22396553	intron	intron	translocation/3'-3'	0	0	0	14	308	low	.	.	.	.	.	ENSG00000178104.19	ENSG00000104635.15	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFB9P2(22403),CAPZA1P4(115961)	NDUFB9P2(22416),CAPZA1P4(115948)	./.	./.	chr7:131776655	chr7:131776668	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00923	LINC00923	-/.	-/.	chr15:97803488	chr15:97803499	intron	intron	duplication/ITD	0	0	0	31	0	low	.	.	.	.	.	ENSG00000251209.9	ENSG00000251209.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PDE4DIP	OTX2P1(77471),PCSK5(88598)	+/.	./.	chr1:148810794	chr9:75802046	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000178104.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	chr1:201702673	chr1:201702686	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000231871.5	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
PDE4DIP	OTX2P1(77481),PCSK5(88588)	+/.	./.	chr1:148810794	chr9:75802056	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000178104.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481634	chr17:39481717	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77463),PCSK5(88606)	./.	./.	chr7:39505425	chr9:75802038	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096630	chr2:141096690	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
PDE4DIP	OTX2P1(77483),PCSK5(88586)	+/.	./.	chr1:148810794	chr9:75802058	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000178104.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016304.1(54228),TMCO5A(376608)	SLC26A11(7006),RNF213(360)	./.	./.	chr15:37545331	chr17:80260506	intergenic	intergenic	translocation	0	0	0	25	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15025),LRCH1(22185)	./.	./.	chr13:46530929	chr13:46530983	intergenic	intergenic	duplication/ITD	0	0	0	83	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298015	chr7:32298024	intron	intron	duplication/ITD	0	0	0	72	72	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
EBF2(344),RNA5SP258(91123)	FP671120.4	./.	+/.	chr8:26045757	chr21:8214785	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ALK	ALK	-/.	-/.	chr2:29889686	chr2:29889745	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000171094.18	ENSG00000171094.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77465),PCSK5(88604)	./.	./.	chr7:39505425	chr9:75802040	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77471),PCSK5(88598)	./.	./.	chr7:39505425	chr9:75802046	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
MED6P1(8573),AL353149.1(200733)	MED6P1(8588),AL353149.1(200718)	./.	./.	chr10:88058396	chr10:88058411	intergenic	intergenic	duplication/ITD	0	0	0	111	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77473),PCSK5(88596)	./.	./.	chr7:39505425	chr9:75802048	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
METTL15	UTY	+/.	-/.	chr11:28310969	chrY:13330392	intron	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000169519.21	ENSG00000183878.15	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824734	chr12:65824725	5'UTR	5'UTR	duplication/ITD	0	0	0	143	144	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114356	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092346	chr11:88092435	intron	intron	duplication/ITD	0	0	0	850	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
RGS12	IDUA	+/+	+/-	chr4:3386020	chr4:993642	exon	intron	inversion/3'-3'	0	0	0	0	14	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	ENSG00000127415.13	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683466	chr15:81683475	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
BICC1	DIP2A(27618),S100B(971)	+/.	./.	chr10:58688003	chr21:46597633	intron	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000122870.12	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
C16orf95	BICC1	-/-	+/-	chr16:87317154	chr10:58688003	CDS	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000260456.7	ENSG00000122870.12	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
FAT1(23082),AC108865.1(141165)	AC025470.2	./.	+/.	chr4:186749804	chr5:57533337	intergenic	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000250961.2	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
RGS12	FAT1(23082),AC108865.1(141165)	+/+	./+	chr4:3386020	chr4:186749804	exon	intergenic	deletion	0	0	0	0	0	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
MRC2	AC025470.2	+/+	+/+	chr17:62689981	chr5:57533337	CDS	exon	translocation	0	0	0	9	6	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028.14	ENSG00000250961.2	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
FXNP1(22669),NRXN3(87426)	FXNP1(22768),NRXN3(87327)	./.	./.	chr14:78082947	chr14:78083046	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398691	chr7:54398700	intron	intron	duplication/ITD	0	0	0	19	0	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01793	AC007179.2	+/.	-/.	chr2:59267325	chr2:59267334	intron	intron	duplication/3'-3'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000222030.1	ENSG00000233891.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC078909.2(1312),Metazoa_SRP(105321)	AC078909.2(1365),Metazoa_SRP(105268)	./.	./.	chr15:37111296	chr15:37111349	intergenic	intergenic	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143078	chr11:82143087	intron	intron	duplication/ITD	0	0	0	654	257	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(5)	.	.	.
MGC32805(95898),LINC02201(53967)	TRERF1	./.	-/.	chr5:122574985	chr6:42262467	intergenic	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	upstream	upstream	mismatches(2)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22765),NRXN3(87330)	./.	./.	chr14:78082946	chr14:78083043	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2),merge_adjacent	.	.	.
CACNG4	CACNG4	+/.	+/.	chr17:67002609	chr17:67002646	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000075461.6	ENSG00000075461.6	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AC021355.1(212418),GFRA2(168494)	AC021355.1(212431),GFRA2(168481)	./.	./.	chr8:21521904	chr8:21521917	intergenic	intergenic	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AC021355.1(212416),GFRA2(168496)	AC021355.1(212431),GFRA2(168481)	./.	./.	chr8:21521902	chr8:21521917	intergenic	intergenic	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02543(21026),AL365265.1(20558)	SGK3	./.	+/.	chr6:16020823	chr8:66718918	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104205.16	.	.	upstream	downstream	mismatches(1)	.	.	.
GDNF-AS1	SGK3	+/.	+/.	chr5:37840125	chr8:66718919	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248587.8	ENSG00000104205.16	.	.	downstream	downstream	mismatches(1)	.	.	.
CHD3	HNRNPM	+/.	+/.	chr17:7885000	chr19:8485224	CDS	intron	translocation	0	0	0	2	3	low	.	.	.	.	.	ENSG00000170004.17	ENSG00000099783.12	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	MAP1LC3BP1(11863),SLC24A2(31065)	./.	./.	chr4:186749803	chr9:19476387	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	GL000220.1:131578	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PDZD8(43120),AC005871.2(6634)	MED13L(33649),AC079384.2(46236)	./.	./.	chr10:117418560	chr12:116311342	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SGK3	AL109976.1	+/.	+/.	chr8:66718919	chr20:3240143	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104205.16	ENSG00000277287.1	.	.	downstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046188	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(5)	.	.	.
SGK3	RAI1	+/.	+/.	chr8:66718919	chr17:17799274	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104205.16	ENSG00000108557.19	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01572	LINC01572	-/.	-/.	chr16:72284995	chr16:72285004	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000261008.7	ENSG00000261008.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	chr1:201702673	chr1:201702686	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000231871.5	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
LINC02864	.	-/.	./.	chr18:73168245	GL000220.1:157828	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263711.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312083	chr11:22312092	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SGK3	CERK	+/.	-/.	chr8:66718919	chr22:46732005	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104205.16	ENSG00000100422.14	.	.	downstream	downstream	mismatches(1)	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520832	chr7:30520927	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	duplicates(2),low_entropy(7)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392796	chr1:90392807	intron	intron	duplication/ITD	0	0	0	326	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
OTX2P1(77424),PCSK5(88645)	OTX2P1(77481),PCSK5(88588)	./.	./.	chr9:75801999	chr9:75802056	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(5)	.	.	.
KLHL29	BTN1A1	+/.	+/.	chr2:23579054	chr6:26504369	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000124557.13	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	TECTA	+/.	+/.	chr2:32916556	chr11:121153181	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000109927.11	.	.	downstream	upstream	mismatches	.	.	.
AL133372.2	SEPTIN9	-/.	+/.	chr14:30207314	chr17:77452809	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248975.2	ENSG00000184640.20	.	.	upstream	upstream	mismatches(1)	.	.	.
NPBWR2	AL353072.2(99385),AL353709.1(716329)	-/-	./-	chr20:64106458	chr1:195030695	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(24%)|	.	.	ENSG00000125522.3	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02474	VPS41(14371),POU6F2(31144)	+/.	./.	chr1:221982989	chr7:38946765	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228437.5	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBB4BP8(313597),PAICSP7(3041)	TUBB4BP8(313635),PAICSP7(3003)	./.	./.	chrX:94633622	chrX:94633660	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC109479.1	MX2	-/-	+/+	chr5:179377621	chr21:41376615	exon	intron	translocation	0	0	0	0	0	low	.	.	|Dynamin_GTPase_effector_domain(100%),Dynamin_central_region(100%),Dynamin_family(100%)	.	.	ENSG00000253163.1	ENSG00000183486.14	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU1-154P(731),AC239860.2(27374)	RNU1-154P(740),AC239860.2(27365)	./.	./.	chr1:145432424	chr1:145432433	intergenic	intergenic	duplication/ITD	0	0	0	186	180	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
INPP5B	NPBWR2	-/-	-/+	chr1:37930205	chr20:64106458	3'UTR	CDS	translocation/5'-5'	0	0	0	0	0	low	.	.	Type_II_inositol_1_4_5-trisphosphate_5-phosphatase_PH_domain(100%)|	.	.	ENSG00000204084.13	ENSG00000125522.3	.	.	upstream	upstream	mismatches(1)	.	.	.
PAXBP1(79),C21orf62-AS1(229)	PAXBP1(88),C21orf62-AS1(220)	./.	./.	chr21:32771871	chr21:32771880	intergenic	intergenic	duplication/ITD	0	0	0	760	276	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916525	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1632	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
HIPK2	HIPK2	-/.	-/.	chr7:139729319	chr7:139729384	intron	intron	duplication/ITD	0	0	0	31	30	low	.	.	.	.	.	ENSG00000064393.16	ENSG00000064393.16	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916570	chr21:8214784	intron	intron	translocation	0	0	0	1588	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
ADAMTS9-AS2	ALOX15P1	+/.	+/.	chr3:64736203	chr17:6659830	intron	intron	translocation	0	0	0	974	14	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000274114.2	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001599.1	.	+/.	./.	chr21:26914103	GL000220.1:111486	intron	intergenic	translocation	0	0	0	15	.	low	.	.	.	.	.	ENSG00000223563.1	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
ZNF423	LSM12	-/.	-/.	chr16:49668473	chr17:44053047	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000102935.12	ENSG00000161654.10	.	.	upstream	upstream	mismatches(1)	.	.	.
TUBB4BP8(313597),PAICSP7(3041)	TUBB4BP8(313632),PAICSP7(3006)	./.	./.	chrX:94633622	chrX:94633657	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TUBB4BP8(313597),PAICSP7(3041)	TUBB4BP8(313630),PAICSP7(3008)	./.	./.	chrX:94633622	chrX:94633655	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
TUBB4BP8(313597),PAICSP7(3041)	TUBB4BP8(313634),PAICSP7(3004)	./.	./.	chrX:94633622	chrX:94633659	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02086	CSAG3	+/.	+/.	chr17:48677975	chrX:152758876	intron	intron	translocation	0	0	0	4	16	low	.	.	.	.	.	ENSG00000244649.5	ENSG00000268916.6	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131328	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
DLG2	DLG2	-/.	-/.	chr11:84711327	chr11:84711378	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000150672.18	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392798	chr1:90392891	intron	intron	duplication/ITD	0	0	0	326	334	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	same_gene	.	.	.
PAXBP1(93),C21orf62-AS1(215)	PAXBP1(102),C21orf62-AS1(206)	./.	./.	chr21:32771885	chr21:32771894	intergenic	intergenic	duplication/ITD	0	0	0	774	721	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ADAMTS9-AS2	AL365204.3(90889),AL513317.1(22398)	+/.	./.	chr3:64736203	chr9:24047333	intron	intergenic	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ABCC4	NCOA5LP(16498),CNEP1R1(39182)	-/.	./.	chr13:95029218	chr16:49985228	intron	intergenic	translocation	0	0	0	1	20	low	.	.	.	.	.	ENSG00000125257.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683500	chr15:81683513	intron	intron	duplication/3'-3'	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236830	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092353	chr11:88092446	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(14),low_entropy(7),merge_adjacent	.	.	.
AC106901.1(79729),AC016903.1(10555)	ADAMTS9-AS2	./.	+/.	chr2:204459521	chr3:64736203	intergenic	intron	translocation	0	0	0	60	974	low	.	.	.	.	.	.	ENSG00000241684.6	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	AL357513.1(66946),TBC1D32(167073)	+/.	./.	chr3:64736203	chr6:120912421	intron	intergenic	translocation	0	0	0	974	30	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3430),ELMOD1(758)	AP001823.1(3529),ELMOD1(659)	./.	./.	chr11:107590333	chr11:107590432	intergenic	intergenic	duplication/ITD	0	0	0	683	646	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL390791.1(69354),PCNPP2(97817)	AL390791.1(69411),PCNPP2(97760)	./.	./.	chr9:88873070	chr9:88873127	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484570	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC108734.3	TMEM154	-/.	-/.	chr3:180816272	chr4:152661288	intron	intron	translocation	0	0	0	23	99	low	.	.	.	.	.	ENSG00000285336.1	ENSG00000170006.12	.	.	downstream	upstream	low_entropy	.	.	.
AC008785.1(60464),AC126755.3(50874)	AL022162.1(20909),XPNPEP2(39692)	./.	./.	chr16:18262420	chrX:129699257	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	SMAGP	-/.	-/.	chr11:3702367	chr12:51248435	intron	intron	translocation	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000170545.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC106901.1(79731),AC016903.1(10553)	ADAMTS9-AS2	./.	+/.	chr2:204459523	chr3:64736203	intergenic	intron	translocation	0	0	0	60	974	low	.	.	.	.	.	.	ENSG00000241684.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LGR6	LINC00486	+/.	+/.	chr1:202208425	chr2:32916556	intron	intron	translocation/5'-5'	0	0	0	5	1606	low	.	.	.	.	.	ENSG00000133067.18	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
IGF2	.	-/.	./.	chr11:2138068	GL000220.1:158104	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000167244.21	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
ADAMTS9-AS2	AL357513.1(66948),TBC1D32(167071)	+/.	./.	chr3:64736203	chr6:120912423	intron	intergenic	translocation	0	0	0	974	30	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PROM1(9731),AC108063.2(20124)	PROM1(9744),AC108063.2(20111)	./.	./.	chr4:16094109	chr4:16094122	intergenic	intergenic	duplication/ITD	0	0	0	54	54	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ADAMTS9-AS2	C17orf100	+/.	+/.	chr3:64736203	chr17:6659828	intron	intron	translocation	0	0	0	974	14	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000256806.6	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565315	chr15:81565324	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236824	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236822	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
UTRN	AC078778.1	+/.	+/.	chr6:144648111	chr12:54304542	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818.18	ENSG00000258344.1	.	.	upstream	upstream	mismatches(1)	.	.	.
FLI1	FLI1	+/+	+/+	chr11:128693993	chr11:128693940	5'UTR	5'UTR	duplication/ITD	0	0	0	1	1	low	.	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	.	.	ENSG00000151702.17	ENSG00000151702.17	.	.	downstream	upstream	low_entropy(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	chr7:139729319	chr7:139729383	intron	intron	duplication/ITD	0	0	0	31	30	low	.	.	.	.	.	ENSG00000064393.16	ENSG00000064393.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661625	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMCO5B	PITPNM3	-/-	-/+	chr15:33236820	chr17:6481986	exon	intron	translocation/5'-5'	0	0	0	88	0	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000091622.16	.	.	upstream	upstream	mismatches(1)	.	.	.
IPO9-AS1	NAV1	-/.	+/.	chr1:201702673	chr1:201702688	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000134369.15	.	.	upstream	downstream	duplicates(6),low_entropy(4)	.	.	.
MARCHF3	.	-/.	./.	chr5:126930649	KI270733.1:176201	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000173926.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565302	chr15:81565311	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
ARNTL	AC012060.1(92676),LINC02248(36443)	+/.	./.	chr11:13354188	chr15:26358594	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000133794.20	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	AL365204.3(90891),AL513317.1(22396)	+/.	./.	chr3:64736203	chr9:24047335	intron	intergenic	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	upstream	mismatches(1)	.	.	.
OTX2P1(77481),PCSK5(88588)	Z83818.2	./.	-/.	chr9:75802056	chrX:87716930	intergenic	intron	translocation	0	0	0	24	14	low	.	.	.	.	.	.	ENSG00000282914.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565300	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
KCNMB2-AS1	HDAC7	-/.	-/.	chr3:178655138	chr12:47810805	intron	intron	translocation	0	0	0	13	8	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000061273.18	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	AC006058.2(38),AC006058.3(600)	+/.	./.	chr2:32916556	chr3:43997481	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
MAP4K4	HOXD13(2465),HOXD12(1386)	+/.	./.	chr2:101785796	chr2:176098409	intron	intergenic	deletion	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	.	.	.	downstream	upstream	mismatches(1)	.	.	.
THBS4	UTRN(24892),AL023283.1(418619)	+/.	./.	chr5:80035293	chr6:144877926	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113296.14	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GPRIN1(8931),SNCB(995)	.	./.	./.	chr5:176619087	KI270733.1:176199	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),uninteresting_contigs(1)	.	.	.
TMCO5B	ADAMTS9-AS2	-/-	+/+	chr15:33236832	chr3:64736203	exon	intron	translocation	0	0	0	88	974	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000241684.6	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262496	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	C17orf100	+/.	+/.	chr3:64736203	chr17:6659830	intron	intron	translocation	0	0	0	974	14	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000256806.6	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP98	DAZAP2	-/.	+/.	chr11:3702357	chr12:51248435	intron	intron	translocation/3'-3'	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000183283.16	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADAMTS9-AS2	AL357513.1(66944),TBC1D32(167075)	+/.	./.	chr3:64736203	chr6:120912419	intron	intergenic	translocation	0	0	0	974	30	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275725	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419128	chr14:106419141	exon	exon	duplication/ITD	0	0	0	92	71	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
RPSAP2(46057),NOP56P1(4672)	TPK1	./.	-/.	chr6:28778961	chr7:144654438	intergenic	intron	translocation	0	0	0	22	1	low	.	.	.	.	.	.	ENSG00000196511.14	.	.	upstream	upstream	mismatches(1)	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479898	intron	intron	translocation/3'-3'	0	0	0	334	988	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	duplicates	.	.	.
ILKAP	FP236383.3(931),FP236383.11(6597)	-/.	./.	chr2:238203140	chr21:8455723	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DNMT3A	AC124947.1	-/.	-/.	chr2:25252493	chr12:93375531	intron	intron	translocation	0	0	0	1	30	low	.	.	.	.	.	ENSG00000119772.17	ENSG00000257252.6	.	.	upstream	downstream	mismatches(1)	.	.	.
FREM1	FREM1	-/.	-/.	chr9:14774515	chr9:14774526	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000164946.20	ENSG00000164946.20	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670924	chr2:23670933	intron	intron	duplication/3'-3'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNMT3A	RPSAP2(46057),NOP56P1(4672)	-/.	./.	chr2:25252493	chr6:28778961	intron	intergenic	translocation	0	0	0	1	22	low	.	.	.	.	.	ENSG00000119772.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661629	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIR3681HG	ANGPT1	+/.	-/.	chr2:11888198	chr8:107291889	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224184.6	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
AC254629.1	AC124947.1	-/-	-/-	chr7:100966577	chr12:93375531	exon	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000274993.1	ENSG00000257252.6	.	.	upstream	downstream	mismatches(1)	.	.	.
AL132996.1	AL132996.1	+/.	+/.	chr6:90342640	chr6:90342655	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000260271.3	ENSG00000260271.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPR157(17214),MIR34AHG(1695)	FP236383.3	./.	+/.	chr1:9146316	chr21:8392571	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269689	chr14:77269787	intron	intron	duplication/ITD	0	0	0	20	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FRMD3	FRMD3	-/.	-/.	chr9:83416735	chr9:83490790	intron	intron	duplication	0	0	0	3	2	low	.	.	.	.	.	ENSG00000172159.16	ENSG00000172159.16	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNK1	AC138305.1(25155),AC018846.1(60282)	+/.	./.	chr1:233614668	chr16:63643201	intron	intergenic	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000135750.15	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479905	intron	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA0232	MED13	+/.	-/.	chr4:6856544	chr17:61947469	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000170871.12	ENSG00000108510.10	.	.	downstream	upstream	mismatches(1)	.	.	.
AC254629.1	RPSAP2(46057),NOP56P1(4672)	-/-	./+	chr7:100966577	chr6:28778961	exon	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000274993.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU1-154P(718),AC239860.2(27387)	RNU1-154P(727),AC239860.2(27378)	./.	./.	chr1:145432411	chr1:145432420	intergenic	intergenic	duplication/ITD	0	0	0	188	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PKNOX2	GPC3	+/+	-/+	chr11:125411520	chrX:133661569	exon	intron	translocation/5'-5'	0	0	0	11	195	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|	.	.	ENSG00000165495.16	ENSG00000147257.15	.	.	downstream	upstream	mismatches	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864108	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF385D	ZNF385D	-/.	-/.	chr3:21471248	chr3:21471296	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000151789.12	ENSG00000151789.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
OTX2P1(77428),PCSK5(88641)	OTX2P1(77439),PCSK5(88630)	./.	./.	chr9:75802003	chr9:75802014	intergenic	intergenic	duplication/ITD	0	0	0	24	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PPP3CC	.	+/.	./.	chr8:22486063	KI270733.1:154141	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000120910.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RN7SKP120(269663),AL353730.1(220843)	RN7SKP120(269708),AL353730.1(220798)	./.	./.	chr9:25358814	chr9:25358859	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(2)	.	.	.
CYP2A13	CYP2A13	+/.	+/.	chr19:41089814	chr19:41089823	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000197838.5	ENSG00000197838.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
USP9YP34	USP9YP34	+/.	+/.	chrY:17992369	chrY:17992422	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000233378.1	ENSG00000233378.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023787.2	RPSAP2(46116),NOP56P1(4613)	+/.	./.	chr2:239517621	chr6:28779020	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000286525.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
USP51(19197),AL590410.1(11983)	USP51(19212),AL590410.1(11968)	./.	./.	chrX:55508399	chrX:55508414	intergenic	intergenic	duplication/ITD	0	0	0	4	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TPCN1	.	+/.	./.	chr12:113295640	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000186815.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
USP51(19199),AL590410.1(11981)	USP51(19212),AL590410.1(11968)	./.	./.	chrX:55508401	chrX:55508414	intergenic	intergenic	duplication/ITD	0	0	0	4	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00333(73409),AL445588.1(230869)	LINC00333(73450),AL445588.1(230828)	./.	./.	chr13:84636645	chr13:84636686	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ACMSD	CCNT2-AS1	+/.	-/.	chr2:134845510	chr2:134845525	intron	intron	duplication/3'-3'	0	0	0	21	21	low	.	.	.	.	.	ENSG00000153086.14	ENSG00000224043.8	.	.	upstream	downstream	duplicates(14),low_entropy(6)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683458	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661567	chrX:133661576	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396372	chr10:104479907	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
AC018467.1(122842),AC012506.1(8766)	MMP2	./.	+/.	chr2:23321898	chr16:55433378	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000087245.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007179.2	AC007100.1	-/.	-/.	chr2:59267325	chr2:59267334	intron	intron	duplication	0	0	0	2	1	low	.	.	.	.	.	ENSG00000233891.8	ENSG00000271955.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
FXNP1(22676),NRXN3(87419)	FXNP1(22775),NRXN3(87320)	./.	./.	chr14:78082954	chr14:78083053	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),low_entropy(1),merge_adjacent	.	.	.
LINC02279(75100),AL390254.1(9277)	LINC02279(75139),AL390254.1(9238)	./.	./.	chr14:95038076	chr14:95038115	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565315	chr15:81565324	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
FXNP1(22671),NRXN3(87424)	FXNP1(22770),NRXN3(87325)	./.	./.	chr14:78082949	chr14:78083048	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257369	chr16:24257428	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(7),low_entropy(1),merge_adjacent	.	.	.
NOS1AP	CDK12	+/.	+/.	chr1:162261492	chr17:39481711	intron	intron	translocation/5'-5'	0	0	0	51	109	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000167258.15	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS1AP	CDK12	+/.	+/.	chr1:162261494	chr17:39481711	intron	intron	translocation/5'-5'	0	0	0	51	109	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000167258.15	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS1AP	CDK12	+/.	+/.	chr1:162261496	chr17:39481711	intron	intron	translocation/5'-5'	0	0	0	51	109	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000167258.15	.	.	downstream	downstream	mismatches(1)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	chr8:88881408	chr8:88881421	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000253553.7	ENSG00000253553.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
EXO1	GRIK4	+/.	+/.	chr1:241860039	chr11:120606304	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174371.17	ENSG00000149403.13	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
EXO1	SRMP1(7266),RNA5SP486(5253)	+/.	./.	chr1:241860039	chr20:47867938	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174371.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OXGR1(137592),LINC00456(36429)	XKR3	./.	-/.	chr13:97132322	chr22:16791741	intergenic	intron	translocation	0	0	0	12	2	low	.	.	.	.	.	.	ENSG00000172967.7	.	.	upstream	upstream	mismatches	.	.	.
AL121977.2	GDA	-/.	+/.	chr6:82363593	chr9:72149990	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000286875.1	ENSG00000119125.17	.	.	downstream	downstream	mismatches(1)	.	.	.
KLRG2	FRMD5	-/-	-/+	chr7:139483665	chr15:44009763	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188883.5	ENSG00000171877.21	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC073409.1(238166),ELOAP1(12691)	AC073409.1(238225),ELOAP1(12632)	./.	./.	chr2:123682611	chr2:123682670	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KLRG2	EXO1	-/-	+/-	chr7:139483665	chr1:241860039	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188883.5	ENSG00000174371.17	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SKI	FRMD5	+/.	-/.	chr1:2256702	chr15:44009763	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157933.10	ENSG00000171877.21	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OTX2P1(77427),PCSK5(88642)	OTX2P1(77440),PCSK5(88629)	./.	./.	chr9:75802002	chr9:75802015	intergenic	intergenic	duplication/ITD	0	0	0	24	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(4)	.	.	.
RNU6-551P(110281),PAPSS1(44775)	FP236383.3	./.	+/.	chr4:107545501	chr21:8400368	intergenic	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
C6orf223	AL358972.1(77715),AL450345.2(364929)	+/+	./-	chr6:44004039	chr6:164426359	exon	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000181577.16	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8444501	intron	intron	translocation/5'-5'	0	0	0	1606	42	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AC010476.2(76547),AC010591.1(121492)	AC010476.2(76589),AC010591.1(121450)	./.	./.	chr5:155275799	chr5:155275841	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
RN7SL824P(52808),GFI1(17550)	FP236383.3(3848),FP236383.11(3680)	./.	./.	chr1:92455493	chr21:8458640	intergenic	intergenic	translocation	0	0	0	16	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117366	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
AL358972.1(77715),AL450345.2(364929)	KCTD15(71704),AC008556.1(18885)	./.	./.	chr6:164426359	chr19:33887467	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC084759.3	NKILA(41152),AL162291.1(141462)	+/+	./-	chr15:53910829	chr20:57753932	exon	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	ENSG00000280362.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	PTPRJ	+/.	+/.	chr2:32916556	chr11:48095473	intron	intron	translocation/5'-5'	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000149177.13	.	.	downstream	downstream	mismatches	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143071	chr11:82143170	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(5),merge_adjacent	.	.	.
C6orf223	AC023468.1(292090),AC013265.1(56825)	+/+	./-	chr6:44004039	chr2:139267096	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000181577.16	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL354855.1(21524),SNORD62A(91627)	PRIMA1	./.	-/.	chr9:131394038	chr14:93781516	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175785.13	.	.	downstream	upstream	mismatches(1)	.	.	.
AL020994.1	LINC02554	-/.	+/.	chr22:27316603	chr22:27316616	intron	intron	duplication/5'-5'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000226741.2	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785669	chr2:101785763	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
DHFR	AL358033.1(24237),FTLP19(41256)	-/.	./.	chr5:80651216	chr10:16030160	intron	intergenic	translocation	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC105180.2(10848),ZFAT(76453)	STXBP6(54676),LINC02286(19494)	./.	./.	chr8:134401335	chr14:25104973	intergenic	intergenic	translocation	0	0	0	120	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC233701.1(7293),MIR4739(95962)	GPC3	./.	-/.	chr17:79611214	chrX:133661562	intergenic	intron	translocation	0	0	0	0	195	low	.	.	.	.	.	.	ENSG00000147257.15	.	.	downstream	upstream	mismatches(1)	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581680	chr5:93581689	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
C6orf223	AC019330.1	+/+	-/+	chr6:44004039	chr2:198760214	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000181577.16	ENSG00000225421.2	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC25A48	.	+/.	./.	chr5:135832435	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000145832.14	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
PABPC1P10(37342),AC108729.3(28534)	PABPC1P10(37389),AC108729.3(28487)	./.	./.	chr3:155347149	chr3:155347196	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AL590623.1(3090648),KSR1P1(275554)	AL590623.1(3090667),KSR1P1(275535)	./.	./.	chr10:41873756	chr10:41873775	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674828	chr5:20674837	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(43),low_entropy(5)	.	.	.
C6orf223	SOBP	+/+	+/+	chr6:44004040	chr6:107629055	exon	intron	deletion	0	0	0	0	2	low	.	.	|Sine_oculis-binding_protein(100%)	.	.	ENSG00000181577.16	ENSG00000112320.12	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117374	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
RTL1	KIAA2012	-/-	+/-	chr14:100881153	chr2:202105679	CDS	intron	translocation/5'-5'	0	0	0	0	13	low	.	.	Domain_of_unknown_function_(DUF4939)(100%),RNase_H-like_domain_found_in_reverse_transcriptase(100%)|	.	.	ENSG00000254656.3	ENSG00000182329.14	.	.	upstream	downstream	duplicates(11)	.	.	.
C6orf223	RPS12P24(68994),LINC01048(191227)	+/+	./+	chr6:44004039	chr13:37290240	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000181577.16	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
C6orf223	SPTBN4	+/+	+/-	chr6:44004040	chr19:40556346	exon	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000181577.16	ENSG00000160460.16	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
OOSP4B	RABEP2	+/.	-/.	chr11:59999311	chr16:28906289	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000255393.2	ENSG00000177548.13	.	.	downstream	downstream	homopolymer(1)	.	.	.
EXO1	KCTD15(71707),AC008556.1(18882)	+/.	./.	chr1:241860039	chr19:33887470	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174371.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	.	+/.	./.	chr21:8216632	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000278996.1	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479889	chr14:82214962	intron	intergenic	translocation	0	0	0	988	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
INPP5D	AL158801.2	+/.	-/.	chr2:233117636	chr14:55271273	intron	exon	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000258413.2	.	.	downstream	downstream	mismatches(1)	.	.	.
AC106793.1(161903),RNU4-58P(178828)	KCTD15(71707),AC008556.1(18882)	./.	./.	chr16:59361298	chr19:33887470	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	AC016026.1	+/.	-/.	chr21:8214792	chr22:17796203	intron	intron	translocation	0	0	0	2358	0	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000093100.13	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023468.1(292090),AC013265.1(56825)	KCTD15(71704),AC008556.1(18885)	./.	./.	chr2:139267096	chr19:33887467	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC005332.4	LINC01495	+/+	-/+	chr17:68205975	chr11:22480925	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000274712.2	ENSG00000255323.6	.	.	downstream	upstream	mismatches(1)	.	.	.
SPC25	DHFR	-/.	-/.	chr2:168903786	chr5:80651216	intron	intron	translocation	0	0	0	0	81	low	.	.	.	.	.	ENSG00000152253.9	ENSG00000228716.7	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117386	chr10:113117395	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
TMX4	TMX4	-/.	-/.	chr20:8018434	chr20:8018528	intron	intron	duplication/ITD	0	0	0	0	10	low	.	.	.	.	.	ENSG00000125827.9	ENSG00000125827.9	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
XRCC5	XRCC5	+/.	+/.	chr2:216187820	chr2:216187835	intron	intron	duplication/ITD	0	0	0	55	1	low	.	.	.	.	.	ENSG00000079246.16	ENSG00000079246.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308652	chr3:19308665	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(7),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916565	chr21:8397818	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
TAOK1	AC073529.1	+/+	-/+	chr17:29390578	chrX:11065672	5'UTR	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000160551.12	ENSG00000234129.8	.	.	downstream	upstream	mismatches(1)	.	.	.
CSMD1	INSYN1-AS1(36542),AC018943.1(63794)	-/.	./.	chr8:4169680	chr15:73807155	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000183117.19	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916565	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916565	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	FOXO1	+/.	-/.	chr2:32916551	chr13:40664889	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150907.10	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396383	chr10:104396392	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
AC022748.2	LSM14B	+/.	+/.	chr15:78672957	chr20:62131771	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261303.6	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31187732	chrX:31187741	intron	intron	duplication/ITD	0	0	0	73	73	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	.	+/.	./.	chr21:8399951	GL000220.1:160363	intron	intergenic	translocation	0	0	0	729	.	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DYM	DYM	-/.	-/.	chr18:49097875	chr18:49097890	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000141627.14	ENSG00000141627.14	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36380608	chr20:36380617	intron	intron	duplication/ITD	0	0	0	126	120	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10907),AP000345.1(8360)	./.	./.	chr22:23558642	chr22:23558704	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC104997.1(28857),SCARA5(644)	METTL15	./.	+/.	chr8:27869239	chr11:28310969	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000169519.21	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092332	chr11:88092441	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092348	chr11:88092442	intron	intron	duplication/ITD	0	0	0	850	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	small_insert_size	.	.	.
AL160004.2(1520),ACTA1(4075)	RPS3AP40(7055),AC004923.1(1077)	./.	./.	chr1:229427170	chr11:67933486	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396373	chr10:104396384	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
RPS3AP40(7060),AC004923.1(1072)	AL359232.1	./.	-/.	chr11:67933491	chr14:66365974	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000258561.2	.	.	upstream	downstream	mismatches(1)	.	.	.
PAXBP1(72),C21orf62-AS1(236)	PAXBP1(171),C21orf62-AS1(137)	./.	./.	chr21:32771864	chr21:32771963	intergenic	intergenic	duplication/ITD	0	0	0	760	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL359232.1	SUPT5H	-/.	+/.	chr14:66365974	chr19:39458236	intron	exon	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000258561.2	ENSG00000196235.14	.	.	downstream	upstream	mismatches(1)	.	.	.
AC087854.1	.	-/.	./.	chr8:22486063	GL000220.1:136153	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000251034.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458071	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(6),low_entropy(4),merge_adjacent	.	.	.
RPS3AP40(7060),AC004923.1(1072)	AL031073.2(65794),SPANXN4(219543)	./.	./.	chr11:67933491	chrX:142806375	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FREM2	FREM2	+/.	+/.	chr13:38813465	chr13:38813478	intron	intron	duplication/ITD	0	0	0	5	3	low	.	.	.	.	.	ENSG00000150893.11	ENSG00000150893.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
SUPT5H	AL031073.2(65794),SPANXN4(219543)	+/.	./.	chr19:39458236	chrX:142806375	exon	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000196235.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FOXD2-AS1(2545),FOXD2(858)	GRPEL2P1(60345),AL162573.1(102670)	./.	./.	chr1:47437186	chr13:89039130	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419212	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(2)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22679),NRXN3(87416)	./.	./.	chr14:78082946	chr14:78082957	intergenic	intergenic	duplication/ITD	0	0	0	455	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336183	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16353),AC016134.1(9515)	./.	./.	chr15:41599884	chr15:41599942	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581684	chr5:93581693	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308660	chr3:19308669	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(39),low_entropy(8)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193831	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
KDM6B	FP671120.4	+/.	+/.	chr17:7852758	chr21:8214798	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000132510.11	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02357(5150),AC097714.1(2457)	LINC02357(5203),AC097714.1(2404)	./.	./.	chr4:26109408	chr4:26109461	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
C2orf83	C2orf83	-/.	-/.	chr2:227643250	chr2:227643289	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000042304.13	ENSG00000042304.13	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
RAMP1	RAMP1	+/.	+/.	chr2:237908411	chr2:237908436	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000132329.11	ENSG00000132329.11	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
SAP130	SAP130	-/.	-/.	chr2:127958636	chr2:127958685	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000136715.19	ENSG00000136715.19	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
FRMD3	FRMD3	-/.	-/.	chr9:83407838	chr9:83407853	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000172159.16	ENSG00000172159.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	.	+/.	./.	chr15:81565292	KI270733.1:148202	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
IGSF21	FBXL18	+/.	-/.	chr1:18307795	chr7:5500367	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117154.12	ENSG00000155034.19	.	.	upstream	downstream	mismatches(1)	.	.	.
GRTP1(225),ADPRHL1(35237)	PDCD6IPP2(913),AC174469.1(21747)	./.	./.	chr13:113364373	chr15:28859920	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC104465.1(74377),AC092810.3(31650)	AC104465.1(74420),AC092810.3(31607)	./.	./.	chr1:209075853	chr1:209075896	intergenic	intergenic	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32297998	chr7:32298009	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(23),low_entropy(7)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236821	chr15:33236830	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CCNT2-AS1	ACMSD	-/.	+/.	chr2:134845509	chr2:134845524	intron	intron	duplication/5'-5'	0	0	0	21	21	low	.	.	.	.	.	ENSG00000224043.8	ENSG00000153086.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683523	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
DTNBP1(65883),ARPC3P5(205841)	AP001823.1(3425),ELMOD1(763)	./.	./.	chr6:15728941	chr11:107590328	intergenic	intergenic	translocation	0	0	0	0	683	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902255	chr4:94902264	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(13),merge_adjacent	.	.	.
CCDC37-DT	AC008798.1(9216),AC008507.3(4777)	-/.	./.	chr3:126394805	chr19:29911085	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249833.7	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916412	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
ACMSD	ACMSD	+/.	+/.	chr2:134845509	chr2:134845524	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000153086.14	ENSG00000153086.14	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CCNT2-AS1	ACMSD	-/.	+/.	chr2:134845510	chr2:134845525	intron	intron	duplication/5'-5'	0	0	0	21	21	low	.	.	.	.	.	ENSG00000224043.8	ENSG00000153086.14	.	.	upstream	downstream	duplicates(14),low_entropy(6)	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	GL000220.1:132229	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SKI	EXO1	+/.	+/.	chr1:2256702	chr1:241860039	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157933.10	ENSG00000174371.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SND1	IFITM3P8(2518),AC022182.1(1083)	+/.	./.	chr7:128022712	chr8:60908970	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000197157.11	.	.	.	downstream	upstream	mismatches	.	.	.
FAM111B(1527),FAM111A-DT(1194)	LINC01432(143326),AL035258.1(2574)	./.	./.	chr11:59128939	chr20:22217980	intergenic	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GPRIN1(8931),SNCB(995)	FP236383.3	./.	+/.	chr5:176619087	chr21:8397832	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
ACMSD	ACMSD	+/.	+/.	chr2:134845510	chr2:134845525	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000153086.14	ENSG00000153086.14	.	.	upstream	downstream	duplicates(14),low_entropy(7)	.	.	.
CFAP77	IQCH-AS1	+/.	-/.	chr9:132457328	chr15:67307531	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188523.9	ENSG00000259673.6	.	.	downstream	upstream	mismatches(1)	.	.	.
ASTN1	MMP2-AS1	-/.	-/.	chr1:177164771	chr16:55433378	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152092.16	ENSG00000260135.7	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308654	chr3:19308665	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NOTCH3	NOTCH3	-/.	-/.	chr19:15169187	chr19:15169198	intron	intron	duplication/ITD	0	0	0	18	0	low	.	.	.	.	.	ENSG00000074181.9	ENSG00000074181.9	.	.	upstream	downstream	duplicates(12),low_entropy(6)	.	.	.
ADK	ADK	+/.	+/.	chr10:74665731	chr10:74665782	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000156110.15	ENSG00000156110.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
FTH1P9(38087),VCAN(6501)	FTH1P9(38134),VCAN(6454)	./.	./.	chr5:83465117	chr5:83465164	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
SHISA5(10328),PFKFB4(2530)	RPL19P20(2217),RPSAP61(89151)	./.	./.	chr3:48515154	chrX:44651936	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565360	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ADAMTS9-AS2	BMPR1B	+/.	+/.	chr3:64736203	chr4:94902262	intron	intron	translocation/3'-3'	0	0	0	974	1847	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000138696.11	.	.	upstream	upstream	duplicates(10)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565360	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565360	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
GALNT13	KIF6	+/.	-/.	chr2:153899212	chr6:39614492	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	ENSG00000164627.18	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565360	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396541	chr8:22396552	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565296	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
MAOB	MAOB	-/.	-/.	chrX:43857117	chrX:43857130	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000069535.14	ENSG00000069535.14	.	.	upstream	downstream	duplicates(5),low_entropy(5)	.	.	.
LINC02882	ABHD17AP4	-/.	-/.	chr12:73881443	chr22:20670403	intron	intron	translocation/3'-3'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000251138.7	ENSG00000229107.2	.	.	downstream	downstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880822	intron	intron	translocation	0	0	0	12	21	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880804	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880802	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
RANBP10	OPHN1	-/.	-/.	chr16:67737095	chrX:67962334	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000141084.11	ENSG00000079482.14	.	.	downstream	downstream	mismatches(1)	.	.	.
AC010202.1(135083),LINC00485(160542)	PAXBP1(166),C21orf62-AS1(142)	./.	./.	chr12:102648738	chr21:32771958	intergenic	intergenic	translocation	0	0	0	4	759	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
U6(246395),HSP90AB2P(35608)	TCF7L2	./.	+/.	chr4:13297806	chr10:113117379	intergenic	intron	translocation	0	0	0	672	266	low	.	.	.	.	.	.	ENSG00000148737.17	.	.	downstream	upstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880820	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880818	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396376	chr10:104396385	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880816	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGAP44	ARHGAP44	+/.	+/.	chr17:12903084	chr17:12903127	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000006740.17	ENSG00000006740.17	.	.	upstream	downstream	duplicates(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138638	chrX:31138647	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC092100.1	MED15	-/.	+/.	chr7:69336333	chr22:20548541	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000225718.2	ENSG00000099917.17	.	.	upstream	upstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880812	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880810	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34-DT	FP671120.4	-/.	+/.	chr4:108568686	chr21:8214781	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000234492.4	ENSG00000278996.1	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880808	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
MCUB	CYP2A7	+/.	-/.	chr4:109618952	chr19:40880806	intron	intron	translocation	0	0	0	12	22	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC01500	-/.	+/.	chr10:104479810	chr14:58973616	intron	intron	translocation/5'-5'	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000258583.7	.	.	upstream	downstream	mismatches(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11816881	GL000220.1:160360	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77467),PCSK5(88602)	./.	./.	chr7:39505425	chr9:75802042	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093206.1(33198),DTWD2(17417)	KRTAP5-5(13712),AP006285.1(18165)	./.	./.	chr5:118818657	chr11:1644419	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	chr10:80511712	chr10:80511727	intron	intron	duplication/ITD	0	0	0	39	39	low	.	.	.	.	.	ENSG00000108219.15	ENSG00000108219.15	.	.	upstream	downstream	duplicates(13),low_entropy(11)	.	.	.
CCDC26	CRLF2	-/.	-/.	chr8:128953550	chrX:1260776	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229140.11	ENSG00000205755.12	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214996	intron	intron	translocation	0	0	0	1606	8	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
ZCCHC14	AC138776.1(186077),FRG1GP(506031)	-/.	./.	chr16:87420184	chr22:12096435	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131318	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	CTDSP1(69),VIL1(13111)	+/.	./.	chr2:32916556	chr2:218406010	intron	intergenic	deletion	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442260	intron	intron	translocation	0	0	0	1606	8	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262467	chr6:42262480	intron	intron	duplication/ITD	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565311	chr15:81565320	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC007998.4(6516),AC007998.3(30825)	AC007998.4(6531),AC007998.3(30810)	./.	./.	chr18:35413044	chr18:35413059	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TAOK1	STPG2(33766),AC019077.1(74446)	+/+	./+	chr17:29390580	chr4:98177242	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160551.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2292),FP236383.3(121418)	+/.	./.	chr2:32916556	chr21:8259225	intron	intergenic	translocation	0	0	0	1606	6	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AL139381.1	AL139381.1	-/.	-/.	chr13:94977307	chr13:94977322	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000287635.1	ENSG00000287635.1	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AP003390.1(4395),AP001994.1(77286)	AP003390.1(4493),AP001994.1(77188)	./.	./.	chr11:119744018	chr11:119744116	intergenic	intergenic	duplication/ITD	0	0	0	1303	1441	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092266.1(330442),LSINCT5(120126)	.	./.	./.	chr5:2592465	KI270733.1:131114	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SNORD65B(4665),AC016868.1(3906)	TPTE2P1	./.	-/.	chr8:41431392	chr13:24931821	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000253771.6	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8398030	intron	intron	translocation	0	0	0	1606	8	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
BICC1	DIP2A(27616),S100B(973)	+/.	./.	chr10:58688000	chr21:46597631	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000122870.12	.	.	.	downstream	upstream	duplicates(1)	.	.	.
MARS1	FP671120.4(3818),FP671120.10(3890)	+/.	./.	chr12:57488235	chr21:8231464	exon	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL159169.1(42925),AL159169.3(11799)	MGA	./.	+/.	chr9:14574967	chr15:41656378	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000174197.16	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419200	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31943875	chrX:31943894	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520841	chr7:30520922	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL159169.1(42927),AL159169.3(11797)	FRMD3	./.	-/.	chr9:14574969	chr9:83490799	intergenic	intron	duplication	0	0	0	3	2	low	.	.	.	.	.	.	ENSG00000172159.16	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565364	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392810	chr1:90392819	intron	intron	duplication/ITD	0	0	0	334	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565346	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(9),low_entropy(6)	.	.	.
AL159169.1(42927),AL159169.3(11797)	AL159169.1(42938),AL159169.3(11786)	./.	./.	chr9:14574969	chr9:14574980	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ARFGEF3	DCLK2	+/+	+/+	chr6:138229858	chr4:150167247	intron	intron	translocation	0	0	0	0	0	low	.	.	Dimerisation_and_cyclophilin-binding_domain_of_Mon2(82%)|Doublecortin(17%),Protein_kinase_domain(100%)	.	.	ENSG00000112379.9	ENSG00000170390.16	.	.	downstream	upstream	mismatches(1)	.	.	.
EGFR	TEAD4	+/.	+/.	chr7:55019534	chr12:2981316	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146648.19	ENSG00000197905.10	.	.	downstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138620	chrX:31138685	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
AC233701.1(7210),MIR4739(96045)	AC233701.1(7223),MIR4739(96032)	./.	./.	chr17:79611131	chr17:79611144	intergenic	intergenic	duplication/ITD	0	0	0	91	91	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AL159169.1(42925),AL159169.3(11799)	AL159169.1(42938),AL159169.3(11786)	./.	./.	chr9:14574967	chr9:14574980	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
INPP5D	AC011498.5(888),TNFAIP8L1(16321)	+/.	./.	chr2:233117636	chr19:4623195	intron	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE2W	CEMIP2(21730),ABHD17B(24032)	-/.	./.	chr8:73820101	chr9:71838420	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TYRO3(16366),AC016134.1(9502)	MRPS18CP7(82706),RNA5SP505(39)	./.	./.	chr15:41599955	chrX:53909015	intergenic	intergenic	translocation	0	0	0	186	3	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FRMD3	FRMD3	-/.	-/.	chr9:83416735	chr9:83416754	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000172159.16	ENSG00000172159.16	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
FRMD3	MGA	-/.	+/.	chr9:83416735	chr15:41656371	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000172159.16	ENSG00000174197.16	.	.	upstream	downstream	mismatches(1)	.	.	.
PRIMA1	FP671120.4	-/.	+/.	chr14:93720763	chr21:8214799	3'UTR	intron	translocation/3'-3'	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000175785.13	ENSG00000278996.1	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC068138.1(42028),AC062015.1(144819)	AC068138.1(42092),AC062015.1(144755)	./.	./.	chr2:226035225	chr2:226035289	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00499	TRERF1	+/.	-/.	chr4:138402531	chr6:42262580	intron	intron	translocation/3'-3'	0	0	0	0	3473	low	.	.	.	.	.	ENSG00000251372.6	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
EXOC4	EXOC4	+/.	+/.	chr7:133971362	chr7:133971375	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000131558.15	ENSG00000131558.15	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
LINC00486	PPIAP65(48570),LINC02572(279768)	+/.	./.	chr2:32916556	chr2:129545358	intron	intergenic	deletion	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683470	chr15:81683479	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(2)	.	.	.
LHFPL4(5570),DUSP5P2(41356)	MTUS2	./.	+/.	chr3:9559392	chr13:28894314	intergenic	intron	translocation	0	0	0	1	9	low	.	.	.	.	.	.	ENSG00000132938.22	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	AC079313.2	+/.	+/.	chr2:32916556	chr12:54419406	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000258137.5	.	.	downstream	downstream	mismatches	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638069	chr7:116638078	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8399106	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661628	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
DLG2	DLG2	-/.	-/.	chr11:84711331	chr11:84711368	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000150672.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916404	chr3:65729136	intron	intron	translocation	0	0	0	275	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
STYK1	STYK1	-/.	-/.	chr12:10630027	chr12:10630092	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000060140.9	ENSG00000060140.9	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046193	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(32),low_entropy(1),merge_adjacent	.	.	.
CENPP	AC010546.1(242411),AC040174.1(5669)	+/.	./.	chr9:92501706	chr16:63051117	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188312.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	GRAMD1B	-/.	+/.	chr11:84711376	chr11:123625937	intron	3'UTR	deletion/3'-3'	0	0	0	11	7	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000023171.18	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA1549L	MED15	+/.	+/.	chr11:33557935	chr22:20548542	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000110427.17	ENSG00000099917.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	chr1:208413786	chr15:45462159	intergenic	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
IGH-@-ext	C1QTNF12	+/+	-/-	chr14:105867114	chr1:1245901	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000184163.3	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS2P18(22131),AC092573.1(17576)	RPS2P18(22199),AC092573.1(17508)	./.	./.	chr2:173320643	chr2:173320711	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AC025580.2	MACROD2	+/.	+/.	chr15:45462229	chr20:15209116	intron	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000172264.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP42	AJ011931.1	+/.	+/.	chr11:100757409	chr21:45872158	intron	exon	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000165895.19	ENSG00000276633.1	.	.	upstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117366	chr10:113117446	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117437	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117442	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
PLCD4	PLCD4	+/.	+/.	chr2:218616973	chr2:218616986	intron	intron	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	ENSG00000115556.14	ENSG00000115556.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143093	chr11:82143102	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
GYPC	GYPC	+/.	+/.	chr2:126663952	chr2:126663965	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000136732.16	ENSG00000136732.16	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SMURF2	SMURF2	-/.	-/.	chr17:64631274	chr17:64631349	intron	intron	duplication/ITD	0	0	0	31	21	low	.	.	.	.	.	ENSG00000108854.16	ENSG00000108854.16	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565296	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
USP13	FOXA3(2580),IRF2BP1(7231)	+/.	./.	chr3:179653414	chr19:45876377	intron	intergenic	translocation	0	0	0	1	5	low	.	.	.	.	.	ENSG00000058056.10	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491182	chr11:105491191	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
HEMGN(38184),ANP32B(301)	LINC02882	./.	-/.	chr9:97983040	chr12:73881443	intergenic	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	.	ENSG00000251138.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008014.1(15861),AC079906.1(77859)	NKILA(41152),AL162291.1(141462)	./.	./.	chr12:46892645	chr20:57753932	intergenic	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007920.2(14632),RTP4(55820)	RPSAP2(46112),NOP56P1(4617)	./.	./.	chr3:187312565	chr6:28779016	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51925),RBMY2WP(38067)	./.	./.	chrY:22724736	chrY:22724784	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(25),low_entropy(2),merge_adjacent	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491184	chr11:105491193	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674823	chr5:20674832	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL627095.1(5384),ZNF669(8511)	AL627095.1(5448),ZNF669(8447)	./.	./.	chr1:247091451	chr1:247091515	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
RPSAP22(5574),PARTICL(40108)	RPSAP22(5583),PARTICL(40099)	./.	./.	chr2:85497354	chr2:85497363	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL353586.1	AC132217.2	+/.	-/.	chr10:12889013	chr11:2138071	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000285520.1	ENSG00000284779.2	.	.	upstream	upstream	mismatches(1)	.	.	.
DAAM1(45847),GPR135(11770)	DAAM1(45915),GPR135(11702)	./.	./.	chr14:59417252	chr14:59417320	intergenic	intergenic	duplication/ITD	0	0	0	1	20	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC005998.1(61686),DPP6(76425)	AC005998.1(61722),DPP6(76389)	./.	./.	chr7:153810672	chr7:153810708	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446334	chr12:50446345	intron	intron	duplication/ITD	0	0	0	70	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3425),ELMOD1(763)	AC078909.2(1322),Metazoa_SRP(105311)	./.	./.	chr11:107590328	chr15:37111306	intergenic	intergenic	translocation	0	0	0	683	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	SMURF2	+/.	-/.	chr15:81565296	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
WASF1	WASF1	-/.	-/.	chr6:110124186	chr6:110124272	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000112290.13	ENSG00000112290.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP26	ARHGAP26	+/.	+/.	chr5:142949167	chr5:142949180	intron	intron	duplication/ITD	0	0	0	9	0	low	.	.	.	.	.	ENSG00000145819.18	ENSG00000145819.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HS3ST3A1	LINC01495	-/-	-/+	chr17:13600937	chr11:22480925	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153976.3	ENSG00000255323.6	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01198(14967),LRCH1(22243)	AC023034.1	./.	+/.	chr13:46530925	chr15:81565298	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259594.6	.	.	upstream	upstream	low_entropy	.	.	.
STX6	STX6	-/-	-/-	chr1:181023105	chr1:181023141	5'UTR	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	|SNARE_domain(100%),Syntaxin_6__N-terminal(100%)	.	.	ENSG00000135823.14	ENSG00000135823.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
H3P11(26452),THRAP3P1(156974)	PGAM1P1(192569),PLK2(99661)	./.	./.	chr3:31295858	chr5:58354321	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ASB3	ASB3	-/.	-/.	chr2:53594552	chr2:53594588	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000115239.24	ENSG00000115239.24	.	.	upstream	downstream	low_entropy(1)	.	.	.
CSMD2	CSMD2	-/.	-/.	chr1:33950387	chr1:33950398	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000121904.17	ENSG00000121904.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
SUCLG2-AS1	SUCLG2-AS1	+/.	+/.	chr3:67792416	chr3:67792425	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000241316.8	ENSG00000241316.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092322	chr11:88092420	intron	intron	duplication/ITD	0	0	0	783	847	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MIAT	MIAT	+/+	+/+	chr22:26647426	chr22:26647369	intron	exon	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000225783.8	ENSG00000225783.8	.	.	downstream	upstream	duplicates(2),low_entropy(5)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117433	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
HTR1E(43219),AL138827.1(10258)	MMP2	./.	+/.	chr6:87059898	chr16:55433378	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000087245.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092335	chr11:88092434	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC060809.1	SMURF2	+/.	-/.	chr15:81565302	chr17:64631272	intron	intron	translocation	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000108854.16	.	.	upstream	upstream	low_entropy	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419207	chr14:106419120	exon	exon	duplication/ITD	0	0	0	86	71	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824758	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419198	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(12),low_entropy(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419198	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(4)	.	.	.
AC019257.1	AL672310.1	-/-	+/-	chr8:1973463	chr6:170676569	exon	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000253764.3	ENSG00000230423.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442057	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419120	chr14:106419213	exon	exon	duplication/ITD	0	0	0	71	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00520(90884),AL163952.1(8828)	LINC00520(90929),AL163952.1(8783)	./.	./.	chr14:55887615	chr14:55887660	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5441),ZNF669(8454)	./.	./.	chr1:247091449	chr1:247091508	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC023034.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565292	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	downstream	low_entropy	.	.	.
AL358053.1(206653),AL591644.1(221028)	AL358053.1(206662),AL591644.1(221019)	./.	./.	chr9:1756756	chr9:1756765	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419120	chr14:106419213	exon	exon	duplication/3'-3'	0	0	0	71	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
AL451061.1(55887),PLEKHG1(33696)	RANBP10	./.	-/.	chr6:150566187	chr16:67737095	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000141084.11	.	.	upstream	downstream	mismatches(1)	.	.	.
GHR(6367),AC113368.1(893)	GHR(6382),AC113368.1(878)	./.	./.	chr5:42728245	chr5:42728260	intergenic	intergenic	duplication/ITD	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419213	chr14:106419120	exon	exon	duplication/ITD	0	0	0	86	71	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419212	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419214	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MED15P4(5303),AC093838.1(12716)	AC104136.1	./.	-/.	chr2:131542291	chr4:136004548	intergenic	exon	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000251492.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	AC136285.1	./.	+/.	chr11:119744125	chr16:87214275	intergenic	intron	translocation	0	0	0	1348	0	low	.	.	.	.	.	.	ENSG00000261095.1	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419210	exon	exon	duplication/5'-5'	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419210	chr14:106419121	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
AC025183.1(1849),LINC02116(2624)	CGRRF1	./.	+/.	chr5:1853346	chr14:54510146	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100532.13	.	.	upstream	upstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	chr1:208413786	chr15:45462431	intergenic	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL020994.1	LINC02554	-/.	+/.	chr22:27316602	chr22:27316617	intron	intron	duplication/5'-5'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000226741.2	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22709),NRXN3(87386)	./.	./.	chr14:78082946	chr14:78082987	intergenic	intergenic	duplication/ITD	0	0	0	455	455	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
MCUB	MCUB	+/.	+/.	chr4:109618953	chr4:109618968	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000005059.16	ENSG00000005059.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864048	chr9:106864057	intron	intron	duplication/ITD	0	0	0	87	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661630	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
Z93929.1(11434),MDM4P1(21582)	Z93929.1(11445),MDM4P1(21571)	./.	./.	chrX:17911767	chrX:17911778	intergenic	intergenic	duplication/ITD	0	0	0	25	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864050	chr9:106864059	intron	intron	duplication/ITD	0	0	0	87	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AL662789.1(3309),HLA-DQB3(8279)	PPP2R2D(2151),BNIP3(4470)	./.	./.	chr6:32722479	chr10:131961985	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GPRIN1(8931),SNCB(995)	FP671120.4	./.	+/.	chr5:176619087	chr21:8214798	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280000	chr1:148280099	intron	intron	duplication/ITD	0	0	0	40	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
CAMTA1	LINC00486	+/.	+/.	chr1:7493655	chr2:32916556	intron	intron	translocation/5'-5'	0	0	0	2	1606	low	.	.	.	.	.	ENSG00000171735.19	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280000	chr1:148280097	intron	intron	duplication/ITD	0	0	0	40	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GLT6D1(3054),LCN9(20728)	GLT6D1(3093),LCN9(20689)	./.	./.	chr9:135642594	chr9:135642633	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01588	LINC01588	-/.	-/.	chr14:50053614	chr14:50053629	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000214900.11	ENSG00000214900.11	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
AC060765.2(672),AC105031.1(16813)	.	./.	./.	chr8:82962598	GL000220.1:116388	intergenic	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
KANK1	PTPRT	+/.	-/.	chr9:677771	chr20:42131998	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000107104.20	ENSG00000196090.12	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117436	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	AC110053.1(55608),AC046195.1(55369)	./.	./.	chr2:106577227	chr8:137754075	intergenic	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC105180.2(10848),ZFAT(76453)	ZFHX3	./.	-/.	chr8:134401335	chr16:73569790	intergenic	intron	translocation	0	0	0	120	0	low	.	.	.	.	.	.	ENSG00000140836.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
EPHA8	.	+/.	./.	chr1:22588283	GL000220.1:158121	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000070886.12	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
STARD4-AS1	STARD4-AS1	+/.	+/.	chr5:111531939	chr5:111531950	intron	intron	duplication/ITD	0	0	0	3	1	low	.	.	.	.	.	ENSG00000246859.3	ENSG00000246859.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC025183.1(1849),LINC02116(2624)	OLFM1	./.	+/.	chr5:1853346	chr9:135087395	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000130558.20	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565344	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736260	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(10),low_entropy(5)	.	.	.
LINC02552	FP236383.3	-/.	+/.	chr11:104549832	chr21:8397861	intron	intron	translocation	0	0	0	16	6	low	.	.	.	.	.	ENSG00000256422.6	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117367	chr10:113117458	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275785	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
DNAJC1	DNAJC1	-/.	-/.	chr10:21813148	chr10:21813163	intron	intron	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	ENSG00000136770.11	ENSG00000136770.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GDF7	LINC00486	+/+	+/-	chr2:20667387	chr2:32916525	CDS	intron	inversion/3'-3'	0	0	0	3	1632	low	.	.	.	.	.	ENSG00000143869.7	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
SERPINA9	AL132708.1	-/.	+/.	chr14:94464271	chr14:94464318	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000170054.16	ENSG00000256357.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886349	chr10:44886358	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(29),low_entropy(6)	.	.	.
PDCD4	TAFA2	+/.	-/.	chr10:110896212	chr12:62071326	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150593.18	ENSG00000198673.10	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TAFA2	ZC2HC1C	-/.	+/.	chr12:62071326	chr14:75068465	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000198673.10	ENSG00000119703.15	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TAFA2	IQCH	-/.	+/.	chr12:62071326	chr15:67307531	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198673.10	ENSG00000103599.20	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02245	LINC02245	-/.	-/.	chr2:64959107	chr2:64959122	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000237638.2	ENSG00000237638.2	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
AC109492.1	AC109492.1	+/.	+/.	chr5:87019434	chr5:87019443	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000249061.1	ENSG00000249061.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
KDM4B	FP236383.3	+/.	+/.	chr19:5086526	chr21:8400355	intron	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000127663.15	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AL358053.1(206646),AL591644.1(221035)	AL358053.1(206722),AL591644.1(220959)	./.	./.	chr9:1756749	chr9:1756825	intergenic	intergenic	duplication/ITD	0	0	0	40	40	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
ZKSCAN2-DT(53087),LINC02191(105659)	LIPG(20228),SMUG1P1(30937)	./.	./.	chr16:25314153	chr18:49619413	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620585	chr5:110620594	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TAPBPL	ZC2HC1C	+/.	+/.	chr12:6451853	chr14:75068465	intron	intron	translocation/5'-5'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000139192.12	ENSG00000119703.15	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
COMETT	AC060809.1	-/.	+/.	chr7:116638132	chr15:81565292	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259543.1	.	.	downstream	upstream	low_entropy	.	.	.
TAPBPL	IQCH	+/.	+/.	chr12:6451853	chr15:67307531	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139192.12	ENSG00000103599.20	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	BICRAL	+/.	+/.	chr2:32916556	chr6:42782009	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000112624.12	.	.	downstream	upstream	mismatches	.	.	.
AC023034.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565300	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	downstream	low_entropy	.	.	.
STX6	.	-/.	./.	chr1:181023142	KI270733.1:148270	intergenic	intergenic	translocation	0	0	0	1	.	low	.	.	.	.	.	ENSG00000135823.14	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
AC108517.2(305838),Y_RNA(47534)	MAPK8IP1P1(9493),AC005829.2(5014)	./.	./.	chr4:59486252	chr17:46254537	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565311	chr15:81565320	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
USP9YP6	.	-/.	./.	chrY:17913590	KI270733.1:148270	intron	intergenic	translocation	0	0	0	32	.	low	.	.	.	.	.	ENSG00000226116.1	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275772	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(9)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442047	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
AP001823.1(3425),ELMOD1(763)	AP001823.1(3442),ELMOD1(746)	./.	./.	chr11:107590328	chr11:107590345	intergenic	intergenic	duplication/ITD	0	0	0	683	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(16),low_entropy(4)	.	.	.
HGS	.	+/.	./.	chr17:81688571	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000185359.14	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916533	chr21:8397821	intron	intron	translocation	0	0	0	1632	450	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916573	chr21:8397821	intron	intron	translocation	0	0	0	1588	450	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
AL627316.1	FP236383.3	-/.	+/.	chr1:90392796	chr21:8403226	intron	intron	translocation/5'-5'	0	0	0	326	13	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000280441.3	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916573	chr21:8214787	intron	intron	translocation	0	0	0	1588	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442298	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	21	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
LNP1(22670),TMEM45A(13630)	LNP1(22693),TMEM45A(13607)	./.	./.	chr3:100478989	chr3:100479012	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RAP1GAP2	MPRIP	+/.	+/.	chr17:2921057	chr17:17163617	intron	intron	duplication	0	0	0	4	0	low	.	.	.	.	.	ENSG00000132359.15	ENSG00000133030.22	.	.	upstream	downstream	mismatches(1)	.	.	.
PPP3CC	.	+/.	./.	chr8:22486063	KI270733.1:154304	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000120910.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442302	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	11	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442306	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	11	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
GPC6	GPC6	+/.	+/.	chr13:94387725	chr13:94387765	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000183098.11	ENSG00000183098.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
RBFOX3	AL031073.2	-/.	+/.	chr17:79442308	chrX:142380358	intron	intron	translocation/3'-3'	0	0	0	11	8	low	.	.	.	.	.	ENSG00000167281.19	ENSG00000288098.1	.	.	downstream	upstream	mismatches	.	.	.
SMURF2	SMURF2	-/.	-/.	chr17:64631276	chr17:64631326	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000108854.16	ENSG00000108854.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
ABRA(12832),AP003789.1(197891)	ABRA(12841),AP003789.1(197882)	./.	./.	chr8:106783076	chr8:106783085	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661279	chr4:152661294	intron	intron	duplication/ITD	0	0	0	93	10	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16354),AC016134.1(9514)	./.	./.	chr15:41599884	chr15:41599943	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	SUFU	./.	+/.	chr3:31295858	chr10:102547189	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107882.12	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683466	chr15:81683475	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(6),low_entropy(6)	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336181	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16355),AC016134.1(9513)	./.	./.	chr15:41599884	chr15:41599944	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396431	chr8:22396529	intron	intron	duplication/ITD	0	0	0	68	66	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	FAM21EP	+/.	-/.	chr2:32916556	chr10:50021537	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000235618.8	.	.	downstream	downstream	mismatches	.	.	.
AC060809.1	USP9YP6	+/.	-/.	chr15:81565300	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236819	chr15:33236830	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864040	chr9:106864095	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF462	MRE11	+/.	-/.	chr9:106864104	chr11:94419495	intron	3'UTR	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000020922.13	.	.	downstream	downstream	mismatches(1)	.	.	.
CASC8	FP236383.3	-/.	+/.	chr8:127481284	chr21:8399951	intron	intron	translocation/3'-3'	0	0	0	0	729	low	.	.	.	.	.	ENSG00000246228.6	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
PRIMA1	.	-/.	./.	chr14:93720763	KI270733.1:176200	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000175785.13	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257428	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(40),low_entropy(9)	.	.	.
CFAP20DC	DYM	-/.	-/.	chr3:59049799	chr18:49184267	5'UTR	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000163689.20	ENSG00000141627.14	.	.	downstream	downstream	mismatches(1)	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479894	intergenic	intron	translocation	0	0	0	171	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
NXF2(27555),NXF2B(6119)	NXF2(27652),NXF2B(6022)	./.	./.	chrX:102354277	chrX:102354374	intergenic	intergenic	duplication/ITD	0	0	0	0	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096622	chr2:141096691	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	duplicates(4),low_entropy(6)	.	.	.
ST13P7(72603),EXOC4(9956)	ST13P7(72616),EXOC4(9943)	./.	./.	chr7:133243117	chr7:133243130	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(7)	.	.	.
LINC01342(13934),MIR200B(9114)	RNU6-889P(6705),AL441943.2(45506)	./.	./.	chr1:1157990	chr10:2104974	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	FP236383.3(933),FP236383.11(6595)	./.	./.	chr20:20367921	chr21:8455725	intergenic	intergenic	translocation	0	0	0	28	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	chr1:201702673	chr1:201702688	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000134369.15	ENSG00000231871.5	.	.	upstream	downstream	duplicates(6),low_entropy(4)	.	.	.
DDB2	FP236383.3	+/.	+/.	chr11:47233103	chr21:8395070	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	ENSG00000280441.3	.	.	downstream	upstream	duplicates(2)	.	.	.
PDE4DIP	OTX2P1(77479),PCSK5(88590)	+/.	./.	chr1:148810794	chr9:75802054	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000178104.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	chr1:201702673	chr1:201702688	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000231871.5	.	.	upstream	downstream	duplicates(11),low_entropy(8)	.	.	.
AC116359.1(16745),AC094105.1(25727)	FP236383.3	./.	+/.	chr5:2805294	chr21:8420283	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
TBC1D9	MTUS2	-/.	+/.	chr4:140689654	chr13:28894314	intron	intron	translocation	0	0	0	1	9	low	.	.	.	.	.	ENSG00000109436.8	ENSG00000132938.22	.	.	downstream	downstream	mismatches	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396545	chr8:22396554	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470843	chr10:3470941	intron	intron	duplication/ITD	0	0	0	23	19	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC099542.2(24578),AC099542.1(13087)	AC099542.2(24643),AC099542.1(13022)	./.	./.	chr3:81233492	chr3:81233557	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565298	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
AP001823.1(3433),ELMOD1(755)	AP001823.1(3444),ELMOD1(744)	./.	./.	chr11:107590336	chr11:107590347	intergenic	intergenic	duplication/ITD	0	0	0	683	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
Y_RNA(33864),AL450338.1(57334)	LINC02620	./.	-/.	chr6:85811619	chr10:104479810	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009276.1(23632),TUBB3P2(23276)	AC009276.1(23671),TUBB3P2(23237)	./.	./.	chr7:134711622	chr7:134711661	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AL132708.1	AL132708.1	+/.	+/.	chr14:94464271	chr14:94464319	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000256357.1	ENSG00000256357.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SFN(3787),GPN2(7889)	SFN(3856),GPN2(7820)	./.	./.	chr1:26868243	chr1:26868312	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
ADK	ADK	+/.	+/.	chr10:74665731	chr10:74665790	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000156110.15	ENSG00000156110.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
MMP2-AS1	WNK4	-/.	+/.	chr16:55433378	chr17:42788481	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260135.7	ENSG00000126562.17	.	.	downstream	downstream	mismatches(1)	.	.	.
ASTN1	MMP2	-/.	+/.	chr1:177164771	chr16:55433378	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152092.16	ENSG00000087245.13	.	.	downstream	downstream	mismatches(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100458007	chr6:100458070	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00940	.	-/.	./.	chr12:1933581	KI270733.1:173089	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396374	chr10:104396385	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
RPL29(29556),AC115284.3(21312)	AC011503.1(44853),RNA5-8SP4(1470)	./.	./.	chr3:52025451	chr19:24002888	intergenic	intergenic	translocation	1	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	min_support	.	.	.
CACNA1A	CACNA1A	-/.	-/.	chr19:13336565	chr19:13336602	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000141837.22	ENSG00000141837.22	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308658	chr3:19308667	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
CSAG3	CSAG3	+/.	+/.	chrX:152758797	chrX:152758868	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000268916.6	ENSG00000268916.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GALNTL6	LINC01111	+/.	+/.	chr4:172997046	chr8:76448607	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000174473.16	ENSG00000254300.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670920	chr2:23670933	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KLHL29	AC009242.1	+/.	-/.	chr2:23670920	chr2:23670933	intron	intron	duplication/3'-3'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262501	chr6:42262600	intron	intron	duplication/ITD	0	0	0	3754	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670920	chr2:23670933	intron	intron	duplication/5'-5'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPL9P15(86767),AC073359.2(63130)	RPL9P15(86776),AC073359.2(63121)	./.	./.	chr3:154763886	chr3:154763895	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670920	chr2:23670933	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU7-51P(667040),RNU6ATAC28P(34704)	PAXBP1(172),C21orf62-AS1(136)	./.	./.	chr14:83715680	chr21:32771964	intergenic	intergenic	translocation	0	0	0	31	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262484	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398687	chr7:54398698	intron	intron	duplication/ITD	0	0	0	19	0	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SFN(3787),GPN2(7889)	SFN(3852),GPN2(7824)	./.	./.	chr1:26868243	chr1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(18),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262472	chr6:42262481	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880796	chr19:40880859	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565300	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470845	chr10:3470941	intron	intron	duplication/ITD	0	0	0	23	19	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ERC2	LINC02620	-/.	-/.	chr3:56343193	chr10:104479908	intron	intron	translocation/3'-3'	0	0	0	1	855	low	.	.	.	.	.	ENSG00000187672.14	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106231128	chr14:106231191	exon	exon	duplication/5'-5'	0	0	0	8	8	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380247	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683461	chr15:81683470	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565303	chr15:81565312	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
HSD3BP5	LINC02620	+/.	-/.	chr1:119602012	chr10:104479906	intron	intron	translocation/3'-3'	0	0	0	0	855	low	.	.	.	.	.	ENSG00000198857.3	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565303	chr15:81565312	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FP671120.6	H4-16	-/-	-/-	chr21:8210557	chr12:14769961	exon	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280800.1	ENSG00000197837.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01426	LINC01426	+/.	+/.	chr21:34753399	chr21:34753414	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000234380.2	ENSG00000234380.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NRIP3	AC008014.1(15858),AC079906.1(77862)	-/-	./-	chr11:9003961	chr12:46892642	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000175352.11	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143080	chr11:82143089	intron	intron	duplication/ITD	0	0	0	654	257	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
VXN(3267),MYBL1(40384)	VXN(3327),MYBL1(40324)	./.	./.	chr8:66521791	chr8:66521851	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620593	chr5:110620602	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
PCAT14(10852),AP000345.1(8415)	PCAT14(10912),AP000345.1(8355)	./.	./.	chr22:23558649	chr22:23558709	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC023034.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565302	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259594.6	.	.	.	upstream	downstream	low_entropy	.	.	.
AL355674.1(96159),RORB-AS1(4814)	AL355674.1(96168),RORB-AS1(4805)	./.	./.	chr9:74480737	chr9:74480746	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CDKL5	CDKL5	+/.	+/.	chrX:18626664	chrX:18626677	intron	intron	duplication/ITD	0	0	0	84	1	low	.	.	.	.	.	ENSG00000008086.13	ENSG00000008086.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IL16	IL16	+/.	+/.	chr15:81231326	chr15:81231337	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000172349.17	ENSG00000172349.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
KIAA0232	CYP3A7	+/.	-/.	chr4:6856546	chr7:99706823	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000170871.12	ENSG00000160870.15	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	LMNTD1(20091),RN7SKP262(110617)	-/.	./.	chr6:42262566	chr12:25668670	intron	intergenic	translocation	0	0	0	3473	10	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2-AS1	AL359710.1	-/.	-/.	chr3:178655148	chr9:99614515	intron	intron	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000237461.2	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916404	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280000	chr1:148280091	intron	intron	duplication/ITD	0	0	0	40	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(5),low_entropy(7)	.	.	.
LMNTD1(20030),RN7SKP262(110678)	LMNTD1(20091),RN7SKP262(110617)	./.	./.	chr12:25668609	chr12:25668670	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
CSAG3	CSAG3	+/.	+/.	chrX:152758797	chrX:152758872	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000268916.6	ENSG00000268916.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NRIP3	CHRNB4	-/-	-/-	chr11:9003961	chr15:78672954	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)	.	.	ENSG00000175352.11	ENSG00000117971.12	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262481	chr6:42262580	intron	intron	duplication/ITD	0	0	0	3756	3473	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
Metazoa_SRP(1362),AF186192.1(13788)	RNU6-555P(686622),AL121823.1(23819)	./.	./.	chr8:144684826	chrX:91283962	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479801	chr11:88092443	intron	intron	translocation	0	0	0	984	712	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates	.	.	.
LINC00499	TRERF1	+/.	-/.	chr4:138402531	chr6:42262582	intron	intron	translocation/3'-3'	0	0	0	0	2501	low	.	.	.	.	.	ENSG00000251372.6	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262485	chr6:42262584	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00499	TRERF1	+/.	-/.	chr4:138402531	chr6:42262586	intron	intron	translocation/3'-3'	0	0	0	0	2501	low	.	.	.	.	.	ENSG00000251372.6	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
RPSAP2(46118),NOP56P1(4611)	NTRK3-AS1(70873),MRPL46(117538)	./.	./.	chr6:28779022	chr15:88341939	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1	NOS1	-/.	-/.	chr12:117335723	chr12:117335774	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000089250.19	ENSG00000089250.19	.	.	upstream	downstream	duplicates(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683461	chr15:81683470	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262487	chr6:42262586	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CHCHD6(7148),AC011199.1(5497)	UBE2W	./.	-/.	chr3:126967568	chr8:73820101	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104343.21	.	.	upstream	upstream	mismatches(1)	.	.	.
NOS1AP	LMNTD1(20091),RN7SKP262(110617)	+/.	./.	chr1:162261515	chr12:25668670	intron	intergenic	translocation	0	0	0	59	10	low	.	.	.	.	.	ENSG00000198929.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00499	TRERF1	+/.	-/.	chr4:138402531	chr6:42262574	intron	intron	translocation/3'-3'	0	0	0	0	3473	low	.	.	.	.	.	ENSG00000251372.6	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
TAOK1	SYCP1	+/+	+/+	chr17:29390578	chr1:114909431	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	|Synaptonemal_complex_protein_1_(SCP-1)(46%)	.	.	ENSG00000160551.12	ENSG00000198765.12	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1AP	LINC00499	+/.	+/.	chr1:162261533	chr4:138402531	intron	intron	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000251372.6	.	.	downstream	upstream	mismatches(1)	.	.	.
DENND3(7632),SLC45A4(3726)	CYP2A7	./.	-/.	chr8:141203440	chr19:40880795	intergenic	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	.	ENSG00000198077.11	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261462	chr1:162261533	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
U3(104497),GPC1(41723)	AC084759.3(20),AC084759.2(31977)	./.	./.	chr2:240393940	chr15:53914732	intergenic	intergenic	translocation	0	0	0	16	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP20DC	LINC00540	-/.	+/.	chr3:59049800	chr13:22123376	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689.20	ENSG00000276476.3	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262500	chr6:42262599	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(5),low_entropy(10)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565298	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
TRERF1	LMNTD1(20091),RN7SKP262(110617)	-/.	./.	chr6:42262562	chr12:25668670	intron	intergenic	translocation	0	0	0	3473	10	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF717(1494),ROBO2(119618)	ZCCHC14	./.	-/.	chr3:75787077	chr16:87420184	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000140948.13	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262477	chr6:42262576	intron	intron	duplication/ITD	0	0	0	3576	3473	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
Metazoa_SRP(1362),AF186192.1(13788)	CFD(326),MED16(3663)	./.	./.	chr8:144684826	chr19:863967	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262479	chr6:42262578	intron	intron	duplication/ITD	0	0	0	3576	3473	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262504	chr6:42262603	intron	intron	duplication/ITD	0	0	0	3754	1257	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GSE1	RPS18P6(259149),MTHFD2P1(222897)	+/+	./-	chr16:85556157	chr3:95431526	5'UTR	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000131149.19	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP98	AC078909.2(1338),Metazoa_SRP(105295)	-/.	./.	chr11:3702314	chr15:37111322	intron	intergenic	translocation	0	0	0	437	28	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22753),NRXN3(87342)	./.	./.	chr14:78082946	chr14:78083031	intergenic	intergenic	duplication/ITD	0	0	0	455	671	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
NR5A1	FP671120.4	-/-	+/-	chr9:124507410	chr21:8214672	5'UTR	intron	translocation/5'-5'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
DCC	DCC	+/.	+/.	chr18:52474207	chr18:52474222	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000187323.12	ENSG00000187323.12	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
GTPBP3	TGM3(7996),TGM6(31826)	+/.	./.	chr19:17341750	chr20:2349075	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130299.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC068722.1	LINC02864	+/.	-/.	chr15:45709325	chr18:73168244	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259200.2	ENSG00000263711.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683459	chr15:81683470	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
ENAH	.	-/.	./.	chr1:225578637	GL000008.2:99913	intron	intergenic	translocation	0	0	0	2	.	low	.	.	.	.	.	ENSG00000154380.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481627	chr17:39481702	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
TRERF1	MID1IP1(102282),RNU6-591P(172361)	-/.	./.	chr6:42262594	chrX:38908819	intron	intergenic	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	5_8S_rRNA(1695),FP236383.3(122015)	-/.	./.	chr5:80650927	chr21:8258628	intron	intergenic	translocation	0	0	0	12	10	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GSE1	AL353595.1	+/+	+/+	chr16:85556157	chr9:11645402	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131149.19	ENSG00000285784.1	.	.	downstream	upstream	mismatches(1)	.	.	.
OSBPL10(8193),GPD1L(19916)	INSYN1-AS1(36545),AC018943.1(63791)	./.	./.	chr3:32085773	chr15:73807158	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL929472.1(10871),MANEAL(91)	AL353595.1	./.	+/.	chr1:37793756	chr9:11645402	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000285784.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AL353595.1	CCDC200	+/.	-/.	chr9:11645402	chr17:43295967	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000285784.1	ENSG00000236383.8	.	.	upstream	downstream	mismatches(1)	.	.	.
AL353595.1	CDH13	+/.	+/.	chr9:11645401	chr16:83589275	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285784.1	ENSG00000140945.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AL365204.3(90885),AL513317.1(22402)	AL365204.3(90898),AL513317.1(22389)	./.	./.	chr9:24047329	chr9:24047342	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL353595.1	ATRNL1	+/.	+/.	chr9:11645401	chr10:115765972	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285784.1	ENSG00000107518.18	.	.	upstream	upstream	mismatches(1)	.	.	.
FOSL2	ANGPT1	+/.	-/.	chr2:28394136	chr8:107291889	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000075426.12	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
GSE1	ROBO1	+/+	-/+	chr16:85556157	chr3:79598016	5'UTR	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000131149.19	ENSG00000169855.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79730),AC016903.1(10554)	./.	./.	chr2:204459485	chr2:204459522	intergenic	intergenic	duplication/ITD	0	0	0	60	60	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
RNF220	PRMT9	+/.	-/.	chr1:44417643	chr4:147649187	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000187147.18	ENSG00000164169.13	.	.	downstream	downstream	mismatches(1)	.	.	.
ROBO1	CCDC200	-/.	-/.	chr3:79598016	chr17:43295967	intron	intron	translocation	0	0	0	6	1	low	.	.	.	.	.	ENSG00000169855.20	ENSG00000236383.8	.	.	upstream	downstream	mismatches(1)	.	.	.
CLN8	PSMD13(3226),NLRP6(22197)	+/.	./.	chr8:1799265	chr11:256210	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000182372.10	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LNP1(22670),TMEM45A(13630)	LNP1(22687),TMEM45A(13613)	./.	./.	chr3:100478989	chr3:100479006	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
ROBO1	ATRNL1	-/.	+/.	chr3:79598015	chr10:115765972	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855.20	ENSG00000107518.18	.	.	upstream	upstream	mismatches(1)	.	.	.
GSE1	PPEF1	+/+	+/-	chr16:85556157	chrX:18799787	5'UTR	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000131149.19	ENSG00000086717.18	.	.	downstream	downstream	mismatches(1)	.	.	.
DPY19L2P3(48017),WIPF3(15875)	SLC38A4	./.	-/.	chr7:29790611	chr12:46830705	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000139209.16	.	.	upstream	downstream	mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3846),GPN2(7830)	./.	./.	chr1:26868241	chr1:26868302	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(1)	.	.	.
CCDC200	PPEF1	-/.	+/.	chr17:43295967	chrX:18799787	intron	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000236383.8	ENSG00000086717.18	.	.	downstream	downstream	mismatches(1)	.	.	.
CCDC200	PPEF1	-/.	+/.	chr17:43251352	chrX:18799787	intron	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000236383.8	ENSG00000086717.18	.	.	downstream	downstream	mismatches(1)	.	.	.
C1orf194	LINC02458	-/.	-/.	chr1:109113438	chr12:89130233	intron	intron	translocation/3'-3'	0	0	0	8	5	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000246363.3	.	.	downstream	downstream	mismatches(1)	.	.	.
IGSF9B	.	-/.	./.	chr11:133918828	KI270733.1:178391	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000080854.16	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
BNC2(4455),AL162725.2(42213)	PPEF1	./.	+/.	chr9:16875298	chrX:18799788	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000086717.18	.	.	downstream	downstream	mismatches(1)	.	.	.
MGAT5B	ARHGEF18	+/.	+/.	chr17:76868639	chr19:7385854	5'UTR	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000167889.13	ENSG00000104880.19	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419204	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
TRERF1	AP003390.1(4493),AP001994.1(77188)	-/.	./.	chr6:42274711	chr11:119744116	intron	intergenic	translocation	0	0	0	0	1441	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	ZNF74	+/.	+/.	chr2:32916556	chr22:20403059	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000185252.19	.	.	downstream	downstream	mismatches	.	.	.
CDH13	PPEF1	+/.	+/.	chr16:83589275	chrX:18799788	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000086717.18	.	.	upstream	downstream	mismatches(1)	.	.	.
AC013442.1(66844),MIR548AD(119564)	AC013442.1(66919),MIR548AD(119489)	./.	./.	chr2:35351841	chr2:35351916	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ATRNL1	PPEF1	+/.	+/.	chr10:115765972	chrX:18799788	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000107518.18	ENSG00000086717.18	.	.	upstream	downstream	mismatches(1)	.	.	.
AC009161.1(206459),AC009110.1(32167)	SLC25A53	./.	-/.	chr16:62564205	chrX:104116128	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000269743.3	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	CCDC200	./.	-/.	chr3:95431526	chr17:43251352	intergenic	intron	translocation	0	0	0	5	1	low	.	.	.	.	.	.	ENSG00000236383.8	.	.	downstream	downstream	mismatches(1)	.	.	.
FREM2	FREM2	+/.	+/.	chr13:38813459	chr13:38813518	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000150893.11	ENSG00000150893.11	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC009161.1(206459),AC009110.1(32167)	.	./.	./.	chr16:62564205	GL000008.2:99913	intergenic	intergenic	translocation	0	0	0	2	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RBBP6	FP236383.3	+/.	+/.	chr16:24540401	chr21:8392571	5'UTR	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000122257.20	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	AC068722.1	./.	+/.	chr3:95431526	chr15:45709325	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000259200.2	.	.	downstream	downstream	mismatches(1)	.	.	.
OCA2	AC005771.1(88489),AC007423.1(60850)	-/.	./.	chr15:27774285	chr17:70717754	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000104044.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	AC011474.1	+/+	-/-	chr14:106419215	chr19:29447568	exon	intron	translocation	0	0	0	86	53	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
USP21P1(9701),AC008072.1(113692)	LMCD1-AS1	./.	-/.	chr2:224181238	chr3:8306241	intergenic	intron	translocation	0	1	0	0	1	low	.	.	.	.	.	.	ENSG00000227110.7	.	.	downstream	downstream	min_support	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661562	chrX:133661578	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CCDC200	LINC02864	-/.	-/.	chr17:43295967	chr18:73168244	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000236383.8	ENSG00000263711.6	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC26A11(7006),RNF213(360)	KDM4B	./.	+/.	chr17:80260506	chr19:5090392	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661562	chrX:133661576	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132188994	chr7:132189005	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MARS1	.	+/.	./.	chr12:57488235	KI270733.1:128008	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166986.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674816	chr5:20674825	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132188997	chr7:132189008	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3425),ELMOD1(763)	TMEM132B	./.	+/.	chr11:107590328	chr12:125260110	intergenic	intron	translocation	0	0	0	683	0	low	.	.	.	.	.	.	ENSG00000139364.10	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262484	chr6:42262493	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298010	chr7:32298019	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(2)	.	.	.
CCND3	CCND3	-/.	-/.	chr6:41987476	chr6:41987518	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000112576.13	ENSG00000112576.13	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
CFAP58	FXNP1(22720),NRXN3(87375)	+/.	./.	chr10:104396370	chr14:78082998	intron	intergenic	translocation	0	0	0	217	455	low	.	.	.	.	.	ENSG00000120051.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC119673.2	FAT1(23081),AC108865.1(141166)	+/.	./.	chr1:205814213	chr4:186749803	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286619.1	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	chr11:47233105	chr21:8439285	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674811	chr5:20674870	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
EBF2(344),RNA5SP258(91123)	FP236383.3	./.	+/.	chr8:26045757	chr21:8442049	intergenic	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CARD16	CARD16	-/.	-/.	chr11:105077822	chr11:105077835	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000204397.9	ENSG00000204397.9	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458009	intron	intron	duplication/ITD	0	0	0	69	38	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
SYN3	TIMP3	-/.	+/.	chr22:32814142	chr22:32814155	intron	intron	duplication/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000185666.15	ENSG00000100234.12	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106231186	chr14:106231128	exon	exon	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117387	chr10:113117396	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(23),low_entropy(7)	.	.	.
MED6P1(8578),AL353149.1(200728)	MED6P1(8589),AL353149.1(200717)	./.	./.	chr10:88058401	chr10:88058412	intergenic	intergenic	duplication/ITD	0	0	0	114	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	chr5:93581676	chr5:93581685	intron	intron	duplication/ITD	0	0	0	44	39	low	.	.	.	.	.	ENSG00000237187.9	ENSG00000237187.9	.	.	upstream	downstream	duplicates(6),low_entropy(6)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396435	chr8:22396533	intron	intron	duplication/ITD	0	0	0	68	66	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(24),low_entropy(8)	.	.	.
IP6K1(3570),CDHR4(620)	IP6K1(3581),CDHR4(609)	./.	./.	chr3:49790112	chr3:49790123	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARPP21	MT-RNR1	+/.	+/.	chr3:35676494	chrM:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000172995.16	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
NTM	NTM	+/.	+/.	chr11:131741163	chr11:131741209	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000182667.14	ENSG00000182667.14	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
FXNP1(22681),NRXN3(87414)	FXNP1(22689),NRXN3(87406)	./.	./.	chr14:78082959	chr14:78082967	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270727.1:351701	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565296	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
CEP152	MT-RNR1	-/.	+/.	chr15:48806205	chrM:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000103995.14	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(221),AC106894.1(74376)	./.	./.	chr4:16898832	chr4:16898899	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC060765.2(672),AC105031.1(16813)	.	./.	./.	chr8:82962598	GL000220.1:160360	intergenic	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SPC25	MT-RNR1	-/.	+/.	chr2:168903786	chrM:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152253.9	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
FP671120.7(728),5_8S_rRNA(539)	AP001599.1	./.	+/.	chr21:8256242	chr21:26914103	intergenic	intron	duplication	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000223563.1	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MFF-DT	.	-/-	./+	chr2:227268528	KI270733.1:176182	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000236432.8	.	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(1)	.	.	.
G6PC2	MT-RNR1	+/.	+/.	chr2:168903786	chrM:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152254.11	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11816881	chr21:8399951	intron	intron	translocation/3'-3'	0	0	0	5	729	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565298	chr15:81683520	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates	.	.	.
DLG2	GRAMD1B	-/.	+/.	chr11:84711378	chr11:123625937	intron	3'UTR	deletion/3'-3'	0	0	0	11	7	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000023171.18	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	Z96074.1(205442),RN7SKP31(210129)	-/.	./.	chr5:80651216	chrX:138187222	intron	intergenic	translocation	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
DHFR	AL133338.2(218450),GRIK2(72469)	-/.	./.	chr5:80651214	chr6:101108788	intron	intergenic	translocation	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785709	chr2:101785797	intron	intron	duplication/ITD	0	0	0	765	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	small_insert_size	.	.	.
DMD	DMD	-/.	-/.	chrX:31138631	chrX:31138640	intron	intron	duplication/ITD	0	0	0	95	0	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC097459.1	EMCN	+/.	-/.	chr4:100459176	chr4:100459185	intron	intron	duplication/3'-3'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000286150.1	ENSG00000164035.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
DHFR	SKA3	-/.	-/.	chr5:80651215	chr13:21155652	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000165480.16	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
LINC02789	DHFR	+/.	-/.	chr1:199202043	chr5:80651216	intron	intron	translocation/3'-3'	0	0	0	0	81	low	.	.	.	.	.	ENSG00000231718.1	ENSG00000228716.7	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396370	chr10:104479901	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	low_entropy	.	.	.
H4-16	.	-/.	./.	chr12:14769961	GL000220.1:153976	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197837.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SLC9C1	DHFR	-/.	-/.	chr3:112153433	chr5:80651215	intron	intron	translocation/3'-3'	0	0	0	0	81	low	.	.	.	.	.	ENSG00000172139.15	ENSG00000228716.7	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
CDK14	NKILA(41152),AL162291.1(141462)	+/.	./.	chr7:90766754	chr20:57753932	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000058091.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	AC078923.1	-/.	-/.	chr5:80651216	chr12:75861953	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000258077.2	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
U6(246387),HSP90AB2P(35616)	AP001823.1(3425),ELMOD1(763)	./.	./.	chr4:13297798	chr11:107590328	intergenic	intergenic	translocation	0	0	0	672	683	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491180	chr11:105491189	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
DAZAP2	DAZAP2	+/.	+/.	chr12:51248435	chr12:51248448	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000183283.16	ENSG00000183283.16	.	.	upstream	downstream	duplicates(13),low_entropy(1)	.	.	.
DLG2	DLG2	-/.	-/.	chr11:84711331	chr11:84711346	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000150672.18	ENSG00000150672.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC39A14	.	+/.	./.	chr8:22396494	KI270733.1:148270	intron	intergenic	translocation	0	0	0	66	.	low	.	.	.	.	.	ENSG00000104635.15	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
SLC4A4	SLC4A4	+/.	+/.	chr4:71311896	chr4:71311905	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000080493.18	ENSG00000080493.18	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
DHFR	DLEU1	-/.	+/.	chr5:80651215	chr13:50533058	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000176124.15	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
DHFR	RTN4IP1	-/.	-/.	chr5:80651216	chr6:106581377	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000130347.13	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092433	chr21:8403958	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
ARPP21	DHFR	+/.	-/.	chr3:35676494	chr5:80651216	intron	intron	translocation	0	0	0	0	81	low	.	.	.	.	.	ENSG00000172995.16	ENSG00000228716.7	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
AC092506.1(190933),AL591888.1(580795)	RPSAP2(46118),NOP56P1(4611)	./.	./.	chr1:104417611	chr6:28779022	intergenic	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3841),GPN2(7835)	./.	./.	chr1:26868243	chr1:26868297	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DHFR	CEP152	-/.	-/.	chr5:80651216	chr15:48806205	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000103995.14	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
DHFR	NALCN	-/.	-/.	chr5:80651216	chr13:101105864	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716.7	ENSG00000102452.18	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565352	chr15:81565363	intron	intron	duplication/ITD	0	0	0	0	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785671	chr2:101785764	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PIGS	AC016026.1	-/.	-/.	chr17:28571019	chr22:17796198	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087111.21	ENSG00000093100.13	.	.	downstream	upstream	mismatches(1)	.	.	.
KMT2C	AC025887.2	-/.	+/.	chr7:152435462	chr18:32555379	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000055609.20	ENSG00000285095.2	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397817	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565352	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DLEU7	MT-RNR1	-/.	+/.	chr13:50533058	chrM:1503	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000186047.11	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106231134	chr14:106231149	exon	exon	duplication/3'-3'	0	0	0	8	7	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419194	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CDH12	ALPK3	-/.	+/.	chr5:22529193	chr15:84847249	intron	intron	translocation/5'-5'	0	0	0	3	60	low	.	.	.	.	.	ENSG00000154162.15	ENSG00000136383.7	.	.	upstream	downstream	mismatches(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261462	chr1:162261531	intron	intron	duplication/ITD	0	0	0	59	59	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CA5A	AL391336.1(29663),AL157378.1(244847)	-/-	./+	chr16:87891850	chr6:93919073	CDS	intergenic	translocation	0	0	0	4	0	low	.	.	Eukaryotic-type_carbonic_anhydrase(78%)|	.	.	ENSG00000174990.8	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU7-51P(667041),RNU6ATAC28P(34703)	RNU7-51P(667054),RNU6ATAC28P(34690)	./.	./.	chr14:83715681	chr14:83715694	intergenic	intergenic	duplication/ITD	0	0	0	31	29	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10904),AP000345.1(8363)	./.	./.	chr22:23558642	chr22:23558701	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916525	chr21:8214784	intron	intron	translocation	0	0	0	1632	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916525	chr21:8442048	intron	intron	translocation	0	0	0	1632	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
CYREN	LINC02620	-/.	-/.	chr7:135111985	chr10:104479906	intron	intron	translocation/3'-3'	0	0	0	0	855	low	.	.	.	.	.	ENSG00000122783.17	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AL365255.1	AL365255.1	-/.	-/.	chr1:5604443	chr1:5604458	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000236948.2	ENSG00000236948.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	chr2:32916525	chr21:8259013	intron	intergenic	translocation	0	0	0	1632	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	.	+/.	./.	chr2:32916525	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1632	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
HDC	HDC	-/.	-/.	chr15:50254734	chr15:50254777	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000140287.11	ENSG00000140287.11	.	.	upstream	downstream	small_insert_size	.	.	.
LINC00486	.	+/.	./.	chr2:32916525	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1632	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
RN7SL824P(52804),GFI1(17554)	FOXK1	./.	+/.	chr1:92455489	chr7:4705515	intergenic	intron	translocation	0	0	0	16	5	low	.	.	.	.	.	.	ENSG00000164916.11	.	.	upstream	upstream	mismatches(1)	.	.	.
AC106901.1(79725),AC016903.1(10559)	ADAMTS9-AS2	./.	+/.	chr2:204459517	chr3:64736203	intergenic	intron	translocation	0	0	0	60	974	low	.	.	.	.	.	.	ENSG00000241684.6	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE2W	FP671120.4	-/.	+/.	chr8:73820102	chr21:8214782	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000278996.1	.	.	upstream	upstream	duplicates(4),homopolymer(3)	.	.	.
SOAT1	ZBTB44	+/.	-/.	chr1:179342329	chr11:130314625	intron	5'UTR	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000057252.13	ENSG00000196323.14	.	.	downstream	downstream	mismatches(1)	.	.	.
PDE4DIP	PDE4DIP	+/.	+/.	chr1:148810794	chr1:148810809	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000178104.19	ENSG00000178104.19	.	.	upstream	downstream	duplicates(11),low_entropy(3)	.	.	.
UBE2W	5_8S_rRNA(2078),FP236383.3(121632)	-/.	./.	chr8:73820102	chr21:8259011	intron	intergenic	translocation	0	0	0	0	2548	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(4),homopolymer(3)	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	KI270733.1:176183	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(3)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262469	chr6:42262482	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	GL000220.1:114248	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(3)	.	.	.
LINC02864	.	-/.	./.	chr18:73168245	GL000220.1:113856	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263711.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16366),AC016134.1(9502)	./.	./.	chr15:41599884	chr15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(17),low_entropy(5),merge_adjacent	.	.	.
SEC14L5	AC091806.1	+/.	+/.	chr16:5011149	chrX:40289160	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000103184.12	ENSG00000236393.2	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
CSTP1	FP236383.3	-/.	+/.	chr20:23922329	chr21:8441947	intron	intron	translocation/3'-3'	0	0	0	7	47	low	.	.	.	.	.	ENSG00000228476.2	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
SNAP91	SNAP91	-/.	-/.	chr6:83556322	chr6:83556396	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000065609.14	ENSG00000065609.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
INPP5D	GFRA2	+/.	-/.	chr2:233117636	chr8:21691818	intron	3'UTR	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000168546.11	.	.	downstream	downstream	mismatches(1)	.	.	.
GSTA9P(5223),AL121969.1(7906)	ANGPT1	./.	-/.	chr6:52962744	chr8:107291889	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000154188.10	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396395	chr10:104396404	intron	intron	duplication/ITD	0	0	0	217	217	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565298	chr15:81565307	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
INPP5D	AP003304.1(51538),LINC02552(141679)	+/.	./.	chr2:233117636	chr11:104304189	intron	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280000	chr1:148280093	intron	intron	duplication/ITD	0	0	0	40	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	chr2:237784949	chr15:45462230	intron	intron	translocation	0	0	0	12	4	low	.	.	.	.	.	ENSG00000124831.19	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ZNF19	ZNF19	-/.	-/.	chr16:71521009	chr16:71521071	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000157429.16	ENSG00000157429.16	.	.	upstream	downstream	duplicates(1),low_entropy(8)	.	.	.
PIK3R6	PIK3R6	-/.	-/.	chr17:8827737	chr17:8827808	intron	intron	duplication/ITD	0	0	0	1	2	low	.	.	.	.	.	ENSG00000276231.5	ENSG00000276231.5	.	.	upstream	downstream	low_entropy(1)	.	.	.
INPP5D	RAI1	+/.	+/.	chr2:233117636	chr17:17809902	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000108557.19	.	.	downstream	upstream	mismatches(1)	.	.	.
TIMP3	SYN3	+/.	-/.	chr22:32814143	chr22:32814156	intron	intron	duplication/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000100234.12	ENSG00000185666.15	.	.	upstream	downstream	duplicates(1)	.	.	.
CRIM1	INPP5D	+/.	+/.	chr2:36381340	chr2:233117636	intron	intron	duplication	0	0	0	0	21	low	.	.	.	.	.	ENSG00000150938.10	ENSG00000168918.14	.	.	upstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	chr1:201702673	chr1:201702684	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231871.5	ENSG00000231871.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PDE4DIP	OTX2P1(77475),PCSK5(88594)	+/.	./.	chr1:148810794	chr9:75802050	intron	intergenic	translocation	0	0	0	14	24	low	.	.	.	.	.	ENSG00000178104.19	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PGAP4	CACNA1I(6529),ENTHD1(46780)	-/.	./.	chr9:101512105	chr22:39696264	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000165152.9	.	.	.	downstream	downstream	mismatches(1)	.	.	.
INPP5D	AC004585.1(23362),CCR7(3405)	+/.	./.	chr2:233117636	chr17:40550364	intron	intergenic	translocation	0	0	0	21	1	low	.	.	.	.	.	ENSG00000168918.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PGAM4P2(38273),KRT18P21(117615)	PGAM4P2(38320),KRT18P21(117568)	./.	./.	chr4:115803092	chr4:115803139	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(13),low_entropy(2)	.	.	.
RPL34-DT	FP236383.3	-/.	+/.	chr4:108568686	chr21:8397815	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000234492.4	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
TARBP1	ANGPT1	-/.	-/.	chr1:234429779	chr8:107291889	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000059588.10	ENSG00000154188.10	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916568	chr21:8397818	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
CREB3L2	CREB3L2	-/.	-/.	chr7:137972737	chr7:137972750	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000182158.15	ENSG00000182158.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
PTGR1	CFAP58	-/.	+/.	chr9:111561018	chr10:104396383	intron	intron	translocation/3'-3'	0	0	0	0	217	low	.	.	.	.	.	ENSG00000106853.20	ENSG00000120051.15	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	chr2:32916556	chr21:8259012	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785690	chr2:101785789	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
LINC00486	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	chr2:32916555	chr21:8259012	intron	intergenic	translocation	0	0	0	1606	2548	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	low_entropy	.	.	.
DDB2	.	+/.	./.	chr11:47233103	KI270733.1:128340	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	duplicates(2)	.	.	.
SPATA21	MED15	-/.	+/.	chr1:16427788	chr22:20548540	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187144.11	ENSG00000099917.17	.	.	upstream	upstream	mismatches(1)	.	.	.
SYDE2(865),C1orf52(48072)	AC027369.3	./.	-/.	chr1:85201881	chr11:48886864	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000254728.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916571	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021215	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(306),low_entropy(11)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	KI270733.1:131105	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565300	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638075	chr7:116638084	intron	intron	duplication/ITD	0	0	0	119	117	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176184	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
NOTCH2NLB(44938),RNU6-1171P(14662)	DIP2A(27616),S100B(973)	./.	./.	chr1:148724717	chr21:46597631	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114249	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
TMCO1	TMCO1	-/-	-/-	chr1:165724975	chr1:165725025	3'UTR	3'UTR	duplication/ITD	0	0	0	10	10	low	.	.	Integral_membrane_protein_EMC3/TMCO1-like(100%)|	.	.	ENSG00000143183.18	ENSG00000143183.18	.	.	upstream	downstream	duplicates(8),low_entropy(2)	.	.	.
LINC00486	.	+/.	./.	chr2:32916571	GL000220.1:114250	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479821	chr10:104479830	intron	intron	duplication/ITD	0	0	0	992	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:114249	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916571	GL000220.1:158222	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:158221	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824769	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(77),low_entropy(26)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8214783	intron	intron	translocation	0	0	0	1606	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	duplicates	.	.	.
U6(246354),HSP90AB2P(35649)	U6(246394),HSP90AB2P(35609)	./.	./.	chr4:13297765	chr4:13297805	intergenic	intergenic	duplication/ITD	0	0	0	672	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392809	chr1:90392818	intron	intron	duplication/ITD	0	0	0	334	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902261	chr4:94902270	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(3)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280000	chr1:148280089	intron	intron	duplication/ITD	0	0	0	40	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
DTNBP1(65878),ARPC3P5(205846)	DTNBP1(65889),ARPC3P5(205835)	./.	./.	chr6:15728936	chr6:15728947	intergenic	intergenic	duplication/ITD	0	0	0	654	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
DTNBP1(65876),ARPC3P5(205848)	DTNBP1(65889),ARPC3P5(205835)	./.	./.	chr6:15728934	chr6:15728947	intergenic	intergenic	duplication/ITD	0	0	0	654	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),merge_adjacent	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046145	chr12:105046185	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(10)	.	.	.
LY6E(14625),C8orf31(752)	LINC02620	./.	-/.	chr8:143038457	chr10:104479900	intergenic	intron	translocation	0	0	0	171	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046185	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(10)	.	.	.
AC092596.1(15059),AC097655.1(102540)	ASAP1	./.	-/.	chr4:59935729	chr8:130071011	intergenic	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	.	ENSG00000153317.15	.	.	upstream	downstream	mismatches(1)	.	.	.
SHISA9	SHISA9	+/.	+/.	chr16:12943333	chr16:12943344	intron	intron	duplication/ITD	0	0	0	54	51	low	.	.	.	.	.	ENSG00000237515.9	ENSG00000237515.9	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
TAB2(11973),ZC3H12D(23209)	TAB2(11988),ZC3H12D(23194)	./.	./.	chr6:149423586	chr6:149423601	intergenic	intergenic	duplication/ITD	0	0	0	295	295	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125735	chr11:3702314	intron	intron	translocation	0	0	0	305	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104136.1	FASN	-/.	-/.	chr4:136004548	chr17:82097715	exon	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000251492.1	ENSG00000169710.9	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP236383.3	ARHGAP6	+/.	-/.	chr21:8399958	chrX:11159509	intron	intron	translocation/3'-3'	0	0	0	729	7	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000047648.23	.	.	upstream	downstream	mismatches(1)	.	.	.
AL358053.1(206650),AL591644.1(221031)	AL358053.1(206661),AL591644.1(221020)	./.	./.	chr9:1756753	chr9:1756764	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NXF2(27602),NXF2B(6072)	NXF2(27615),NXF2B(6059)	./.	./.	chrX:102354324	chrX:102354337	intergenic	intergenic	duplication/ITD	0	0	0	55	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(8)	.	.	.
POGZ	LAMA4	-/-	-/+	chr1:151459437	chr6:112210017	5'UTR	intron	translocation/5'-5'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000143442.22	ENSG00000112769.20	.	.	upstream	upstream	mismatches(1)	.	.	.
TTC12	PPP1R1AP2(177279),ANKRD26P1(10379546)	+/.	./.	chr11:113337817	chr16:36089795	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000149292.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	NDUFB11	+/.	-/.	chr2:32916556	chrX:47144445	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000147123.11	.	.	downstream	upstream	mismatches	.	.	.
CACNA1E	RANBP3	+/.	-/.	chr1:181644873	chr19:5977300	intron	intron	translocation	0	0	0	3	6	low	.	.	.	.	.	ENSG00000198216.12	ENSG00000031823.14	.	.	upstream	upstream	mismatches(1)	.	.	.
LAMA4	LAMA4	-/.	-/.	chr6:112210017	chr6:112210025	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000112769.20	ENSG00000112769.20	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
POGZ	AC009623.3	-/-	-/-	chr1:151459437	chr8:25824837	5'UTR	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000143442.22	ENSG00000285890.1	.	.	upstream	downstream	mismatches(1)	.	.	.
POGZ	AC012101.2	-/-	+/-	chr1:151459437	chr18:75459146	5'UTR	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000143442.22	ENSG00000287281.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01438(23193),MIR297(40045)	WWC1	./.	+/.	chr4:110820537	chr5:168337916	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000113645.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012101.2	AC012101.2	+/.	+/.	chr18:75459122	chr18:75459146	intron	intron	duplication/ITD	0	0	0	0	11	low	.	.	.	.	.	ENSG00000287281.1	ENSG00000287281.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262492	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
POGZ	COX5AP1(6412),AL158801.2(14730)	-/-	./-	chr1:151459437	chr14:55247492	5'UTR	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000143442.22	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	GRM7	+/.	+/.	chr2:32916412	chr3:7291556	intron	intron	translocation/5'-5'	0	0	0	275	27	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000196277.16	.	.	downstream	downstream	mismatches	.	.	.
PPP3CC	FP236383.11(2064),FP236383.6(392)	+/.	./.	chr8:22486063	chr21:8464862	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120910.15	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MAGI1	+/.	-/.	chr2:32916605	chr3:65729136	intron	intron	translocation	0	0	0	18	18	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151276.23	.	.	downstream	downstream	mismatches	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481635	chr17:39481702	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(4)	.	.	.
AL513321.1(21925),AL592466.1(602)	LSM14B	./.	+/.	chr10:65270717	chr20:62131771	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000149657.20	.	.	upstream	upstream	mismatches(1)	.	.	.
TAPBPL	FUT8	+/.	+/.	chr12:6451853	chr14:65662720	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000139192.12	ENSG00000033170.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PPP3CC	FP236383.11(1897),FP236383.6(559)	+/.	./.	chr8:22486063	chr21:8464695	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000120910.15	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397924	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	duplicates	.	.	.
PPP3CC	FP236383.3	+/.	+/.	chr8:22486063	chr21:8420131	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120910.15	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565353	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
AC087854.1	FP236383.3	-/.	+/.	chr8:22486063	chr21:8420131	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251034.2	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683461	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC2A9	ECM2	-/.	-/.	chr4:9997088	chr9:92501706	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109667.12	ENSG00000106823.12	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP3CC	.	+/.	./.	chr8:22486063	GL000220.1:136320	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000120910.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16360),AC016134.1(9508)	./.	./.	chr15:41599884	chr15:41599949	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
LINC00486	KCNIP4	+/.	-/.	chr2:32916556	chr4:21304141	intron	intron	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000185774.16	.	.	downstream	downstream	mismatches	.	.	.
TAFA2	IQCH-AS1	-/.	-/.	chr12:62071326	chr15:67307531	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198673.10	ENSG00000259673.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC087854.1	.	-/.	./.	chr8:22486063	GL000220.1:136320	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000251034.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683466	chr15:81683475	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683462	chr15:81683471	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(2)	.	.	.
MIR4300HG	AC107892.1(158759),AC087399.1(180903)	-/.	./.	chr11:82143174	chr18:78299646	intron	intergenic	translocation	0	0	0	719	0	low	.	.	.	.	.	ENSG00000245832.7	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093898.1	FP236383.3	+/.	+/.	chr4:18644544	chr21:8400020	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000286046.1	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP3CC	.	+/.	./.	chr8:22486063	KI270733.1:145500	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000120910.15	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC087854.1	.	-/.	./.	chr8:22486063	KI270733.1:145500	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000251034.2	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL139042.1(115516),RNGTT(51453)	APCDD1	./.	+/.	chr6:88558444	chr18:10473472	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000154856.13	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK12	CDK12	+/+	+/+	chr17:39532104	chr17:39532089	3'UTR	3'UTR	duplication/ITD	0	0	0	1	1	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	downstream	upstream	low_entropy(1)	.	.	.
AP001823.1(3458),ELMOD1(730)	AP001823.1(3467),ELMOD1(721)	./.	./.	chr11:107590361	chr11:107590370	intergenic	intergenic	duplication/ITD	0	0	0	685	683	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
ADAMTS9-AS2(61655),LINC02040(59822)	AL139042.1(115519),RNGTT(51450)	./.	./.	chr3:65115094	chr6:88558447	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC2A9	CENPP	-/.	+/.	chr4:9997088	chr9:92501706	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109667.12	ENSG00000188312.14	.	.	downstream	upstream	mismatches(1)	.	.	.
VCAM1(126144),EXTL2(7183)	SIM1	./.	-/.	chr1:100865189	chr6:100458071	intergenic	intron	translocation	0	0	0	6	69	low	.	.	.	.	.	.	ENSG00000112246.10	.	.	downstream	downstream	mismatches(1)	.	.	.
GML	GML	+/.	+/.	chr8:142887393	chr8:142887450	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000104499.7	ENSG00000104499.7	.	.	upstream	downstream	duplicates(6),low_entropy(5)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661561	chrX:133661576	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(12),low_entropy(8)	.	.	.
GRM5(111193),TYR(737)	FXNP1(22774),NRXN3(87321)	./.	./.	chr11:89177138	chr14:78083052	intergenic	intergenic	translocation	0	0	0	6	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262478	chr6:42262577	intron	intron	duplication/ITD	0	0	0	3576	3473	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PLPP3	SMARCA2	-/.	+/.	chr1:56553048	chr9:2110981	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162407.9	ENSG00000080503.24	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280002	chr1:148280098	intron	intron	duplication/ITD	0	0	0	133	142	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CTBP2	POP4(20364),PLEKHF1(27858)	-/.	./.	chr10:125160762	chr19:29637601	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175029.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PXYLP1	RPSAP2(46091),NOP56P1(4638)	+/.	./.	chr3:141268207	chr6:28778995	intron	intergenic	translocation	0	0	0	9	28	low	.	.	.	.	.	ENSG00000155893.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	LINC01060	./.	+/.	chr3:103984260	chr4:188533877	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000249378.6	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM132C	TMEM132C	+/.	+/.	chr12:128525313	chr12:128525362	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000181234.9	ENSG00000181234.9	.	.	upstream	downstream	low_entropy(1)	.	.	.
PTPRM	PTPRM	+/.	+/.	chr18:8240766	chr18:8240779	intron	intron	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	ENSG00000173482.17	ENSG00000173482.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPSAP2(46063),NOP56P1(4666)	RPSAP2(46118),NOP56P1(4611)	./.	./.	chr6:28778967	chr6:28779022	intergenic	intergenic	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(17),low_entropy(2)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092441	chr21:8220959	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
RPSAP2(46117),NOP56P1(4612)	AC008050.1	./.	-/.	chr6:28779021	chr14:76606867	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000259124.1	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484558	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
RPSAP2(46060),NOP56P1(4669)	RPSAP2(46117),NOP56P1(4612)	./.	./.	chr6:28778964	chr6:28779021	intergenic	intergenic	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ALCAM	PAXBP1(174),C21orf62-AS1(134)	+/.	./.	chr3:105368224	chr21:32771966	intron	intergenic	translocation	0	0	0	0	126	low	.	.	.	.	.	ENSG00000170017.12	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	chr7:76580348	chr7:76580399	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000205485.13	ENSG00000205485.13	.	.	upstream	downstream	duplicates(3)	.	.	.
RPSAP2(46060),NOP56P1(4669)	RPSAP2(46116),NOP56P1(4613)	./.	./.	chr6:28778964	chr6:28779020	intergenic	intergenic	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
PXYLP1	AC117383.1	+/.	-/.	chr3:141268163	chr3:141268207	intron	intron	duplication/3'-3'	0	0	0	9	9	low	.	.	.	.	.	ENSG00000155893.13	ENSG00000249417.1	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
LINC01144	HNRNPM	+/+	+/-	chr1:45304504	chr19:8485224	exon	intron	translocation/5'-5'	0	0	0	2	3	low	.	.	.	.	.	ENSG00000281912.1	ENSG00000099783.12	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022215.2	AC022215.2	-/.	-/.	chr3:141268163	chr3:141268207	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000287155.1	ENSG00000287155.1	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AC117383.1	PXYLP1	-/.	+/.	chr3:141268163	chr3:141268207	intron	intron	duplication/5'-5'	0	0	0	9	9	low	.	.	.	.	.	ENSG00000249417.1	ENSG00000155893.13	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683462	chr15:81683471	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2)	.	.	.
AC117383.1	AC022215.2	-/.	-/.	chr3:141268163	chr3:141268207	intron	intron	duplication	0	0	0	9	9	low	.	.	.	.	.	ENSG00000249417.1	ENSG00000287155.1	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261483	chr1:162261492	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
AC117383.1	AC117383.1	-/.	-/.	chr3:141268163	chr3:141268207	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000249417.1	ENSG00000249417.1	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AC092941.1(10567),AC022498.1(92515)	RPSAP2(46112),NOP56P1(4617)	./.	./.	chr3:188014557	chr6:28779016	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PLD5(20080),AC099785.1(126363)	PLD5(20089),AC099785.1(126354)	./.	./.	chr1:242544777	chr1:242544786	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RPSAP2(46113),NOP56P1(4616)	EGLN3	./.	-/.	chr6:28779017	chr14:34047027	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000129521.15	.	.	downstream	downstream	mismatches(1)	.	.	.
RPSAP2(46118),NOP56P1(4611)	AC131254.1(5694),AC131254.3(4407)	./.	./.	chr6:28779022	chr8:29860237	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RGL3	RGL3	-/.	-/.	chr19:11384662	chr19:11384703	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000205517.13	ENSG00000205517.13	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143111	chr11:82143180	intron	intron	duplication/ITD	0	0	0	748	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1)	.	.	.
BMPR1B	RPSAP2(46115),NOP56P1(4614)	+/.	./.	chr4:95032267	chr6:28779019	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000138696.11	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092437	chr21:8220959	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
DLGAP4	DLGAP4	+/.	+/.	chr20:36467020	chr20:36467033	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000080845.18	ENSG00000080845.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RPSAP2(46114),NOP56P1(4615)	AL807761.4	./.	-/.	chr6:28779018	chr9:107077675	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000230782.1	.	.	downstream	upstream	mismatches(1)	.	.	.
PGAM4P2(38320),KRT18P21(117568)	NUP98	./.	-/.	chr4:115803139	chr11:3702359	intergenic	intron	translocation	0	0	0	18	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPSAP2(46058),NOP56P1(4671)	RPSAP2(46114),NOP56P1(4615)	./.	./.	chr6:28778962	chr6:28779018	intergenic	intergenic	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565296	chr15:81565305	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PCAT14(10850),AP000345.1(8417)	PCAT14(10913),AP000345.1(8354)	./.	./.	chr22:23558647	chr22:23558710	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469918	chr7:26469927	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CNOT6L	MIR3668(50092),AL035446.2(320370)	-/.	./.	chr4:77738253	chr6:140255418	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000138767.13	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469928	chr7:26469937	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02864	FP236383.3	-/.	+/.	chr18:73168245	chr21:8441654	intron	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	ENSG00000263711.6	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
PXYLP1	AC124947.1	+/.	-/.	chr3:141268207	chr12:93375497	intron	intron	translocation/5'-5'	0	0	0	9	30	low	.	.	.	.	.	ENSG00000155893.13	ENSG00000257252.6	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005242.4(3763),AP005242.2(6977)	AP005242.4(3810),AP005242.2(6930)	./.	./.	chr18:14996998	chr18:14997045	intergenic	intergenic	duplication/ITD	0	0	0	43	43	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZFPM2	AC021546.1	+/.	-/.	chr8:105155556	chr8:105155596	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000254041.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPSAP2(46079),NOP56P1(4650)	AC245123.1	./.	-/.	chr6:28778983	chr8:2565435	intergenic	intron	translocation	0	0	0	28	20	low	.	.	.	.	.	.	ENSG00000277526.5	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092266.1(330442),LSINCT5(120126)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	chr5:2592465	chr21:8259021	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EVA1A	EVA1A	-/.	-/.	chr2:75555302	chr2:75555317	intron	intron	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	ENSG00000115363.14	ENSG00000115363.14	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC124947.1	AC124947.1	-/.	-/.	chr12:93375492	chr12:93375501	intron	intron	duplication/ITD	0	0	0	30	1	low	.	.	.	.	.	ENSG00000257252.6	ENSG00000257252.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
EVA1A	RPSAP2(46094),NOP56P1(4635)	-/.	./.	chr2:75555302	chr6:28778998	intron	intergenic	translocation	0	0	0	3	28	low	.	.	.	.	.	ENSG00000115363.14	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820101	KI270733.1:178744	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ARHGEF3	ARHGEF3	-/.	-/.	chr3:56995621	chr3:56995672	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000163947.12	ENSG00000163947.12	.	.	upstream	downstream	low_entropy(2)	.	.	.
U3(136504),NXNP1(203197)	RPSAP2(46082),NOP56P1(4647)	./.	./.	chr1:218678403	chr6:28778986	intergenic	intergenic	translocation	0	0	0	13	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNA5SP127(15810),H3P11(24350)	VPS41(14371),POU6F2(31144)	./.	./.	chr3:31244657	chr7:38946765	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	chr5:177876243	chr15:45462786	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000170089.15	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC007920.2(14665),RTP4(55787)	RPSAP2(46114),NOP56P1(4615)	./.	./.	chr3:187312598	chr6:28779018	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193833	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(26),low_entropy(4)	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479889	intron	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007613.1	RPSAP2(46114),NOP56P1(4615)	+/+	./-	chr16:11743551	chr6:28779018	exon	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000262420.3	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CSNK1G1	CSNK1G1	-/.	-/.	chr15:64229507	chr15:64229552	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000169118.18	ENSG00000169118.18	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269728	chr14:77269743	intron	intron	duplication/ITD	0	0	0	79	78	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(12),low_entropy(11)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479811	chr10:104479824	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
CA5AP1	HECTD4	-/-	-/-	chr16:29622769	chr12:112169625	exon	CDS	translocation	0	0	0	4	0	low	.	.	|HECT-domain_(ubiquitin-transferase)(100%)	.	.	ENSG00000260133.1	ENSG00000173064.13	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC012506.4	LINC00486	-/.	+/.	chr2:23379469	chr2:32916556	intron	intron	inversion	0	0	0	2	1606	low	.	.	.	.	.	ENSG00000235497.5	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
ETV4	MAP3K2	-/-	-/-	chr17:43545326	chr2:127387455	CDS	5'UTR	translocation	0	0	0	0	0	low	.	.	PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(7%)|PB1_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000175832.13	ENSG00000169967.16	.	.	upstream	downstream	mismatches(1)	.	.	.
CA5AP1	AL391336.1(29663),AL157378.1(244847)	-/-	./+	chr16:29622769	chr6:93919073	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000260133.1	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC005632.2	AL391336.1(29663),AL157378.1(244847)	-/-	./+	chr16:21536749	chr6:93919073	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000257639.1	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RN7SKP48(34876),AC097488.1(110458)	.	./.	./.	chr4:85135699	GL000220.1:116457	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	ADH5	+/.	-/.	chr2:32916556	chr4:99087407	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000197894.11	.	.	downstream	downstream	mismatches	.	.	.
AC023796.1	AC023796.1	+/.	+/.	chr12:24754387	chr12:24754433	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000255745.2	ENSG00000255745.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	AP001363.1	./.	+/.	chr3:31295858	chr11:62538456	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000250659.2	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106231192	chr14:106231128	exon	exon	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
ZBED5-AS1(91526),LINC02752(20385)	ZBED5-AS1(91576),LINC02752(20335)	./.	./.	chr11:11000498	chr11:11000548	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262566	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
MIR548A1HG(124042),AL589647.1(345652)	MIR548A1HG(124057),AL589647.1(345637)	./.	./.	chr6:18798043	chr6:18798058	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864043	chr9:106864054	intron	intron	duplication/ITD	0	0	0	87	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SYT7	LINC00364(169407),AL512452.1(28223)	-/.	./.	chr11:61549903	chr13:67549401	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000011347.10	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620590	chr5:110620599	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280006	chr1:148280104	intron	intron	duplication/ITD	0	0	0	133	132	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU7-188P(255),SEM1(103451)	RNU7-188P(264),SEM1(103442)	./.	./.	chr7:96378175	chr7:96378184	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLCO1B3	LINC02594	+/.	+/.	chr12:20872513	chr17:43679882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111700.13	ENSG00000267440.2	.	.	downstream	upstream	mismatches(1)	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479900	intergenic	intron	translocation	0	0	0	171	988	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
RSRC1	RSRC1	+/.	+/.	chr3:158106573	chr3:158106586	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000174891.13	ENSG00000174891.13	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
SOD1P2(26624),SALL1(1330)	FXYD5(43924),FAM187B(10995)	./.	./.	chr16:51134645	chr19:35213805	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GRM5(111193),TYR(737)	FXNP1(22770),NRXN3(87325)	./.	./.	chr11:89177138	chr14:78083048	intergenic	intergenic	translocation	0	0	0	6	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
COMETT	AC060809.1	-/.	+/.	chr7:116638129	chr15:81565298	intron	intron	translocation/3'-3'	0	0	0	119	216	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000259543.1	.	.	downstream	upstream	low_entropy	.	.	.
GRM5(111193),TYR(737)	FXNP1(22776),NRXN3(87319)	./.	./.	chr11:89177138	chr14:78083054	intergenic	intergenic	translocation	0	0	0	6	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481630	chr17:39481702	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC093875.1(209859),LINC02511(32321)	.	./.	./.	chr4:136763598	GL000220.1:157832	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ANXA5(3139),SMIM43(58747)	ANXA5(3180),SMIM43(58706)	./.	./.	chr4:121700134	chr4:121700175	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNU1-154P(713),AC239860.2(27392)	RNU1-154P(726),AC239860.2(27379)	./.	./.	chr1:145432406	chr1:145432419	intergenic	intergenic	duplication/ITD	0	0	0	188	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RABGAP1L	RBFOX3	+/.	-/.	chr1:174866097	chr17:79442281	intron	intron	translocation/3'-3'	0	0	0	9	21	low	.	.	.	.	.	ENSG00000152061.23	ENSG00000167281.19	.	.	upstream	downstream	low_entropy	.	.	.
LINC01733	LINC01733	+/.	+/.	chr20:25962664	chr20:25962679	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000226203.2	ENSG00000226203.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275778	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(35),low_entropy(3)	.	.	.
TSHZ3	LINC01791	-/.	+/.	chr19:31183173	chr19:31183239	intron	intron	duplication/5'-5'	0	0	0	64	64	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000267777.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
LY6K	TACC2	+/.	+/.	chr8:142701214	chr10:122215486	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160886.13	ENSG00000138162.19	.	.	upstream	upstream	homopolymer(1)	.	.	.
CACNA2D2(35129),C3orf18(18652)	TACC2	./.	+/.	chr3:50539373	chr10:122215486	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000138162.19	.	.	upstream	upstream	homopolymer(1)	.	.	.
TACC2	PLK5	+/.	+/.	chr10:122215486	chr19:1527170	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138162.19	ENSG00000185988.15	.	.	upstream	upstream	homopolymer(1)	.	.	.
FO393413.1(58404),RNU7-65P(12602)	FO393413.1(58413),RNU7-65P(12593)	./.	./.	chr6:49332198	chr6:49332207	intergenic	intergenic	duplication/ITD	0	0	0	13	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
U3(104497),GPC1(41723)	LINC01592	./.	-/.	chr2:240393940	chr8:68940496	intergenic	intron	translocation	0	0	0	16	1	low	.	.	.	.	.	.	ENSG00000253658.6	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262486	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
TACC2	MYRF	+/.	+/.	chr10:122215486	chr11:61764745	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000138162.19	ENSG00000124920.14	.	.	upstream	downstream	homopolymer(1)	.	.	.
DNAH11	AC010970.1	+/+	-/+	chr7:21543685	chrY:10198168	exon	exon	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000105877.18	ENSG00000225840.2	.	.	downstream	upstream	mismatches(1)	.	.	.
H4-16	CT867976.1(150828),AC138776.1(197052)	-/.	./.	chr12:14769961	chr22:11630471	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197837.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674816	chr5:20674829	intron	intron	duplication/ITD	0	0	0	169	93	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
AC098588.3	H4-16	-/.	-/.	chr4:144469372	chr12:14769961	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285783.1	ENSG00000197837.3	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481628	chr17:39481701	intron	intron	duplication/ITD	0	0	0	115	109	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL391832.4	H4-16	-/.	-/.	chr1:234906877	chr12:14769961	intron	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000286263.1	ENSG00000197837.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC010970.1	GACAT2	-/-	-/+	chrY:10198168	chr18:8705476	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225840.2	ENSG00000265962.1	.	.	upstream	upstream	mismatches(1)	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880790	chr19:40880853	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
GALNT13	SUB1(17598),LINC02061(24887)	+/.	./.	chr2:153899212	chr5:32621677	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.7	H4-16	-/-	-/-	chr21:8254765	chr12:14769961	exon	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281383.1	ENSG00000197837.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LY6E(14625),C8orf31(752)	LINC02620	./.	-/.	chr8:143038457	chr10:104479908	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	AL133346.1	+/.	+/.	chr2:32916556	chr6:132037645	intron	intron	translocation/5'-5'	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000227220.1	.	.	downstream	downstream	mismatches	.	.	.
FP236383.5	H4-16	-/-	-/-	chr21:8437802	chr12:14769961	exon	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281181.1	ENSG00000197837.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392796	chr1:90392891	intron	intron	duplication/ITD	0	0	0	326	334	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	same_gene	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916555	chr21:8217231	intron	intron	translocation/5'-5'	0	0	0	1606	34	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
AL929288.2(18712),RPS3AP9(3849)	NDUFB9P3(84562),LINC01608(5540)	./.	./.	chr1:188690471	chr8:110894456	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.4	H4-16	-/-	-/-	chr21:8393592	chr12:14769961	exon	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280614.1	ENSG00000197837.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565345	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
DIS3L2	DIS3L2	+/.	+/.	chr2:232270861	chr2:232270915	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000144535.20	ENSG00000144535.20	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
KCNMB2	WDFY3	+/.	-/.	chr3:178655137	chr4:84695553	intron	intron	translocation	0	0	0	13	10	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000163625.16	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2-AS1	WDFY3	-/.	-/.	chr3:178655137	chr4:84695553	intron	intron	translocation/3'-3'	0	0	0	13	10	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000163625.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683460	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC006196.1(62147),LINC01790(4274)	AC006196.1(62160),LINC01790(4261)	./.	./.	chr2:194726321	chr2:194726334	intergenic	intergenic	duplication/ITD	0	0	0	3	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479894	intron	intron	translocation/3'-3'	0	0	0	334	988	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	duplicates	.	.	.
WDFY3	WDFY3	-/.	-/.	chr4:84695488	chr4:84695553	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000163625.16	ENSG00000163625.16	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824746	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FOXK1	AL358053.1(206666),AL591644.1(221015)	+/.	./.	chr7:4705559	chr9:1756769	intron	intergenic	translocation	0	0	0	5	40	low	.	.	.	.	.	ENSG00000164916.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNMB2	STX17-AS1	+/.	-/.	chr3:178655148	chr9:99614515	intron	intron	translocation/5'-5'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000255145.3	.	.	downstream	upstream	mismatches(1)	.	.	.
SH3TC1	FP236383.3	+/+	+/+	chr4:8227971	chr21:8441947	CDS	intron	translocation	0	0	0	7	47	low	.	.	.	.	.	ENSG00000125089.17	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092338	chr11:88092433	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
CR1L	MTHFD2P4(49059),TOMM22P4(148716)	+/.	./.	chr1:207645399	chr4:162372966	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000197721.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481630	chr17:39481690	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
NOS1AP	NOS1AP	+/.	+/.	chr1:162261484	chr1:162261493	intron	intron	duplication/ITD	0	0	0	59	51	low	.	.	.	.	.	ENSG00000198929.13	ENSG00000198929.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KCNMB2-AS1	STX17-AS1	-/.	-/.	chr3:178655148	chr9:99614515	intron	intron	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000255145.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FUT8	SRPX	+/.	-/.	chr14:65662720	chrX:38180137	intron	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000033170.17	ENSG00000101955.15	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNMB2	KCNMB2-AS1	+/.	-/.	chr3:178655087	chr3:178655148	intron	intron	duplication/3'-3'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000237978.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	ZNHIT1(7267),CLDN15(635)	+/.	./.	chr2:32916556	chr7:101231457	intron	intergenic	translocation	0	0	0	1606	5	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
VSTM4	GACAT2	-/.	-/.	chr10:49021807	chr18:8705476	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165633.13	ENSG00000265962.1	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNMB2-AS1	KCNMB2	-/.	+/.	chr3:178655087	chr3:178655148	intron	intron	duplication/5'-5'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000197584.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
KCNMB2-AS1	KCNMB2-AS1	-/.	-/.	chr3:178655087	chr3:178655148	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000237978.6	ENSG00000237978.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916413	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
KCNMB2-AS1	SKP2P1(52319),DIAPH2(10441)	-/.	./.	chr3:178655148	chrX:96674222	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000237978.6	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01163	LINC01163	+/.	+/.	chr10:128239620	chr10:128239635	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000280953.2	ENSG00000280953.2	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
PXDN	PXDN	-/.	-/.	chr2:1658028	chr2:1658086	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000130508.11	ENSG00000130508.11	.	.	upstream	downstream	low_entropy(2)	.	.	.
SHISA5(10328),PFKFB4(2530)	AC021979.1	./.	+/.	chr3:48515154	chr15:27626755	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258594.1	.	.	upstream	upstream	mismatches(1)	.	.	.
APCDD1L-DT	APCDD1L-DT	+/.	+/.	chr20:58590217	chr20:58590228	intron	intron	duplication/ITD	0	0	0	21	10	low	.	.	.	.	.	ENSG00000231290.6	ENSG00000231290.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01163	AL050402.1(52852),AL133456.1(50927)	+/.	./.	chr10:128239620	chr22:27512912	intron	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000280953.2	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565363	intron	intron	duplication	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
WDFY3	AL050402.1(52849),AL133456.1(50930)	-/.	./.	chr4:84695553	chr22:27512909	intron	intergenic	translocation	0	0	0	10	1	low	.	.	.	.	.	ENSG00000163625.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC124861.2(17618),AC124861.1(15534)	MICAL3	./.	-/.	chr2:240212026	chr22:17796198	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000243156.9	.	.	downstream	upstream	mismatches(1)	.	.	.
WDFY3	AL050402.1(52851),AL133456.1(50928)	-/.	./.	chr4:84695553	chr22:27512911	intron	intergenic	translocation	0	0	0	10	1	low	.	.	.	.	.	ENSG00000163625.16	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661557	chrX:133661634	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01320	.	+/.	./.	chr2:33767498	KI270733.1:175800	intron	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000228262.10	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396370	chr10:104396381	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(11),low_entropy(3),merge_adjacent	.	.	.
AC209005.1(83224),HMX1(15125)	AP001347.1	./.	+/.	chr4:8830951	chr21:14100747	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000224905.7	.	.	downstream	downstream	mismatches(1)	.	.	.
AL020994.1	AL020994.1	-/.	-/.	chr22:27316602	chr22:27316617	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000223726.1	.	.	upstream	downstream	duplicates(5),low_entropy(6)	.	.	.
C1orf194	C1orf194	-/.	-/.	chr1:109113388	chr1:109113468	intron	intron	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	ENSG00000179902.13	ENSG00000179902.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FAT1(23081),AC108865.1(141166)	SEMA3D	./.	-/.	chr4:186749803	chr7:85185949	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000153993.13	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02554	AL020994.1	+/.	-/.	chr22:27316602	chr22:27316617	intron	intron	duplication/3'-3'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000223726.1	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
AL020994.1	AL050402.1(52846),AL133456.1(50933)	-/.	./.	chr22:27316602	chr22:27512906	intron	intergenic	duplication	0	0	0	13	1	low	.	.	.	.	.	ENSG00000223726.1	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683456	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC132217.2	FP236383.3	-/.	+/.	chr11:2138067	chr21:8392571	intron	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000284779.2	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8448165	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
HDAC5	5_8S_rRNA(2088),FP236383.3(121622)	-/-	./+	chr17:44078034	chr21:8259021	3'UTR	intergenic	translocation	0	0	0	0	35	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840.15	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CCNY(14678),AL121749.1(17138)	CCNY(14744),AL121749.1(17072)	./.	./.	chr10:35587347	chr10:35587413	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
STX17-AS1	AL050402.1(52857),AL133456.1(50922)	-/.	./.	chr9:99614512	chr22:27512917	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000255145.3	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL596087.2	AL596087.2	+/.	+/.	chr1:166288031	chr1:166288044	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000229588.2	ENSG00000229588.2	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC143336.1(94800),AC025774.1(236681)	.	./.	./.	chr5:71851101	KI270733.1:145499	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GPR89B	AL050402.1(52852),AL133456.1(50927)	+/.	./.	chr1:147970492	chr22:27512912	intron	intergenic	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000188092.15	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MIR4277(2504),AC112176.1(13777)	NTN5	./.	-/.	chr5:1711372	chr19:48668651	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000142233.14	.	.	upstream	upstream	mismatches(1)	.	.	.
AC134879.2(4785),RCC2P1(302030)	AC134879.2(4800),RCC2P1(302015)	./.	./.	chrY:11479022	chrY:11479037	intergenic	intergenic	duplication/ITD	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL357513.1(53850),TBC1D32(180169)	AC009806.1(63108),AC107881.1(15251)	./.	./.	chr6:120899325	chr11:12604075	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HDAC7	AL050402.1(52850),AL133456.1(50929)	-/.	./.	chr12:47810805	chr22:27512910	intron	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000061273.18	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNMB2	AL050402.1(52845),AL133456.1(50934)	+/.	./.	chr3:178655096	chr22:27512905	intron	intergenic	translocation	0	0	0	13	1	low	.	.	.	.	.	ENSG00000197584.12	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MYO3B	MMP2	+/.	+/.	chr2:170218213	chr16:55433378	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000071909.19	ENSG00000087245.13	.	.	upstream	downstream	mismatches(1)	.	.	.
BMPR1B	AP001823.1(3425),ELMOD1(763)	+/.	./.	chr4:94902266	chr11:107590328	intron	intergenic	translocation	0	0	0	1847	683	low	.	.	.	.	.	ENSG00000138696.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNMB2	LINC01163	+/.	+/.	chr3:178655138	chr10:128239620	intron	intron	translocation	0	0	0	13	8	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000280953.2	.	.	downstream	upstream	mismatches(1)	.	.	.
ADGRL4	ADGRL4	-/.	-/.	chr1:79204469	chr1:79204482	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000162618.15	ENSG00000162618.15	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC246680.1	VPS54(36311),AC012368.2(30614)	+/.	./.	chr1:143918397	chr2:64055739	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000230186.3	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TNRC18	KDM4B	-/-	+/+	chr7:5374335	chr19:5090391	CDS	intron	translocation	0	0	0	0	19	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000182095.14	ENSG00000127663.15	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239868.1(5507),H2BC21(16448)	VPS54(36311),AC012368.2(30614)	./.	./.	chr1:149868011	chr2:64055739	intergenic	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAD1L1	.	-/.	./.	chr7:1966818	GL000220.1:127651	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000002822.16	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916533	chr21:8214787	intron	intron	translocation	0	0	0	1632	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
SAPCD2P1(11260),ZNF735(12937)	LINC00430(212773),UBBP5(69123)	./.	./.	chr7:64194153	chr13:87149881	intergenic	intergenic	translocation	0	0	0	78	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC00486	ZNRF4(27989),TINCR(73322)	+/.	./.	chr2:32916556	chr19:5484845	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
VPS54(36311),AC012368.2(30614)	FTO	./.	+/.	chr2:64055739	chr16:53763189	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000140718.21	.	.	upstream	upstream	mismatches(1)	.	.	.
HGS	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	chr17:81688571	chr21:8259021	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000185359.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702330	chr11:3702339	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC01736(28329),GALNT2(22466)	VPS54(36311),AC012368.2(30614)	./.	./.	chr1:230035524	chr2:64055739	intergenic	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL35AP21(49946),CEMIP2(43487)	RPL35AP21(49959),CEMIP2(43474)	./.	./.	chr9:71639879	chr9:71639892	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC008415.1	MMP16	+/.	-/.	chr5:165599803	chr8:88319788	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253693.1	ENSG00000156103.16	.	.	upstream	upstream	mismatches(1)	.	.	.
VPS54(36311),AC012368.2(30614)	PID1	./.	-/.	chr2:64055739	chr2:228981941	intergenic	intron	duplication	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000153823.19	.	.	upstream	downstream	mismatches(1)	.	.	.
VPS54(36311),AC012368.2(30614)	FLRT2(93715),LINC02328(163295)	./.	./.	chr2:64055739	chr14:85748143	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NPFFR1	GNG7	-/-	-/+	chr10:70255712	chr19:2637105	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(44%)|	.	.	ENSG00000148734.8	ENSG00000176533.13	.	.	upstream	upstream	mismatches(1)	.	.	.
NPFFR1	AC015983.1(65595),FEZF1(805)	-/-	./-	chr10:70255712	chr7:122300498	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(44%)|	.	.	ENSG00000148734.8	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262573	3'UTR	intron	translocation	0	0	0	0	3473	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AC022748.2	./.	+/.	chr1:188690471	chr15:78672958	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261303.6	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PIEZO1	DHX35(32869),LINC01734(141185)	-/.	./.	chr16:88773230	chr20:39072592	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000103335.22	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:135005	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AL590550.1	AL590550.1	+/.	+/.	chr6:114957421	chr6:114957436	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000287097.1	ENSG00000287097.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
FXNP1(22770),NRXN3(87325)	AC011474.1	./.	-/.	chr14:78083048	chr19:29447568	intergenic	intron	translocation	0	0	0	640	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143083	chr11:82143092	intron	intron	duplication/ITD	0	0	0	748	257	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9789),AC108063.2(20066)	./.	./.	chr4:16094104	chr4:16094167	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
PKNOX2	PKNOX2	+/+	+/+	chr11:125411474	chr11:125411463	exon	exon	duplication/ITD	0	0	0	5	11	low	.	.	N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|Homeobox_KN_domain(100%)	.	.	ENSG00000165495.16	ENSG00000165495.16	.	.	downstream	upstream	duplicates(1),low_entropy(5)	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670926	chr2:23670935	intron	intron	duplication/5'-5'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262499	chr6:42262598	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193829	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262471	chr6:42262482	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
LINC02590(3057),RNU6-242P(44549)	LINC02590(3066),RNU6-242P(44540)	./.	./.	chr2:43046839	chr2:43046848	intergenic	intergenic	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
AC092506.1(281381),AL591888.1(490347)	ATP2B1	./.	-/.	chr1:104508059	chr12:89658599	intergenic	intron	translocation	0	0	0	57	2	low	.	.	.	.	.	.	ENSG00000070961.16	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670919	chr2:23670934	intron	intron	duplication/5'-5'	0	0	0	25	19	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	duplicates(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396427	chr8:22396525	intron	intron	duplication/ITD	0	0	0	68	66	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(3)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32297998	chr7:32298011	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396416	chr8:22396511	intron	intron	duplication/ITD	0	0	0	0	71	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNA5SP243(1515),FAM71F1(9802)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr7:128699259	chr15:29674126	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54398685	chr7:54398741	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	duplicates(2)	.	.	.
SPANXN4(33438),RN7SKP81(22207)	SPANXN4(33453),RN7SKP81(22192)	./.	./.	chrX:143068140	chrX:143068155	intergenic	intergenic	duplication/ITD	0	0	0	66	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FAT1(44710),AC108865.1(119537)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr4:186771432	chr15:29674126	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683472	chr15:81683481	intron	intron	duplication	0	0	0	149	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106231149	chr14:106231134	exon	exon	duplication/ITD	0	0	0	7	8	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),low_entropy(1)	.	.	.
ITM2B	.	+/+	./+	chr13:48234069	KI270733.1:176184	exon/splice-site	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136156.15	.	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565314	chr15:81565323	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP003390.1(4405),AP001994.1(77276)	AP003390.1(4504),AP001994.1(77177)	./.	./.	chr11:119744028	chr11:119744127	intergenic	intergenic	duplication/ITD	0	0	0	1470	1348	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC008269.1	WAC	+/.	+/.	chr2:206862110	chr10:28533541	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321.2	ENSG00000095787.24	.	.	upstream	upstream	mismatches(1)	.	.	.
AC136443.2(42032),ABCC6P2(8685)	AC136443.2(42077),ABCC6P2(8640)	./.	./.	chr16:14812107	chr16:14812152	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ANGPT1	ARL11(18759),EBPL(8043)	-/.	./.	chr8:107291889	chr13:49652631	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000154188.10	.	.	.	upstream	downstream	mismatches	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16352),AC016134.1(9516)	./.	./.	chr15:41599880	chr15:41599941	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC092506.1(281332),AL591888.1(490396)	AC092506.1(281341),AL591888.1(490387)	./.	./.	chr1:104508010	chr1:104508019	intergenic	intergenic	duplication/ITD	0	0	0	57	56	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956913	chr17:75956926	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
GRM5(111193),TYR(737)	FXNP1(22772),NRXN3(87323)	./.	./.	chr11:89177138	chr14:78083050	intergenic	intergenic	translocation	0	0	0	6	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
ARL11(18759),EBPL(8043)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr13:49652631	chr15:29674126	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
RN7SKP146(5116),CLUL1(5022)	RN7SKP146(5181),CLUL1(4957)	./.	./.	chr18:591966	chr18:592031	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683470	chr15:81683479	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
ANGPT1	STRBP	-/.	-/.	chr8:107291889	chr9:123120505	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000154188.10	ENSG00000165209.19	.	.	upstream	downstream	mismatches	.	.	.
AC019257.1	AC144568.2(51829),AC131281.2(18980)	-/-	./+	chr8:1973463	chr8:131604	exon	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253764.3	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SL776P(55501),PHBP14(192167)	RN7SL776P(55570),PHBP14(192098)	./.	./.	chr4:167456263	chr4:167456332	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TMEM232	TMEM232	-/.	-/.	chr5:110620591	chr5:110620600	intron	intron	duplication/ITD	0	0	0	20	13	low	.	.	.	.	.	ENSG00000186952.15	ENSG00000186952.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TYRO3(16366),AC016134.1(9502)	AC113208.3(5183),AC068338.1(9215)	./.	./.	chr15:41599955	chr15:75240017	intergenic	intergenic	deletion	0	0	0	186	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC102941.2(4644),AC022613.1(864)	BCL3	./.	+/.	chr15:29674126	chr19:44749298	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000069399.15	.	.	upstream	downstream	mismatches	.	.	.
MARCHF1	ANGPT1	-/.	-/.	chr4:163858116	chr8:107291889	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000145416.13	ENSG00000154188.10	.	.	downstream	upstream	mismatches	.	.	.
MARCHF1	AC102941.2(4644),AC022613.1(864)	-/.	./.	chr4:163858116	chr15:29674126	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000145416.13	.	.	.	downstream	upstream	mismatches	.	.	.
FXNP1(22768),NRXN3(87327)	AC090506.2(91661),AC016382.1(82735)	./.	./.	chr14:78083046	chr18:30872085	intergenic	intergenic	translocation	0	0	0	640	10	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ANGPT1	EFNB2(4673),ARGLU1(1338)	-/.	./.	chr8:107291889	chr13:106540335	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000154188.10	.	.	.	upstream	downstream	mismatches	.	.	.
C16orf95	NOTCH2NLB(44938),RNU6-1171P(14662)	-/-	./-	chr16:87317152	chr1:148724717	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	SDK1(134396),CYP3A54P(108563)	+/.	./.	chr2:32916556	chr7:4403396	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
AC233263.6(1111212),AC233266.1(99567)	ANGPT1	./.	-/.	chr2:91478911	chr8:107291889	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
AC233263.6(1111212),AC233266.1(99567)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr2:91478911	chr15:29674126	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
MARS1	FP236383.3	+/.	+/.	chr12:57488235	chr21:8438951	exon	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000166986.15	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262470	chr6:42262483	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF483	CFAP58	+/.	+/.	chr9:111561018	chr10:104396379	intron	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	ENSG00000173258.13	ENSG00000120051.15	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
COQ8A	ANGPT1	+/.	-/.	chr1:226957280	chr8:107291889	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000163050.18	ENSG00000154188.10	.	.	upstream	upstream	mismatches	.	.	.
COQ8A	AC102941.2(4644),AC022613.1(864)	+/.	./.	chr1:226957280	chr15:29674126	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000163050.18	.	.	.	upstream	upstream	mismatches	.	.	.
MAP3K7(430071),AL080284.1(373170)	MAP3K7(430082),AL080284.1(373159)	./.	./.	chr6:91017143	chr6:91017154	intergenic	intergenic	duplication/ITD	0	0	0	10	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
TARBP1	AC102941.2(4644),AC022613.1(864)	-/.	./.	chr1:234429779	chr15:29674126	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000059588.10	.	.	.	downstream	upstream	mismatches	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683460	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LEMD1-DT	AC102941.2(4644),AC022613.1(864)	+/.	./.	chr1:205457582	chr15:29674126	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224717.1	.	.	.	downstream	upstream	mismatches	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419206	exon	exon	duplication/3'-3'	0	0	0	92	86	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691687	chr1:202691754	intron	intron	duplication/ITD	0	0	0	13	31	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ANGPT1	AC109136.1(19174),AC109462.1(191477)	-/.	./.	chr8:107291889	chr16:55068492	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154188.10	.	.	.	upstream	upstream	mismatches	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396476	chr8:22396485	intron	intron	duplication/ITD	0	0	0	71	71	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC102941.2(4644),AC022613.1(864)	AC109136.1(19174),AC109462.1(191477)	./.	./.	chr15:29674126	chr16:55068492	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419212	chr14:106419129	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
MIR3681HG	AC102941.2(4644),AC022613.1(864)	+/.	./.	chr2:11888198	chr15:29674126	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224184.6	.	.	.	upstream	upstream	mismatches	.	.	.
CUX2	CUX2	+/.	+/.	chr12:111328939	chr12:111328956	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000111249.14	ENSG00000111249.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZBED5-AS1(111471),LINC02752(440)	AL445255.1	./.	-/.	chr11:11020443	chr13:82816769	intergenic	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	.	ENSG00000286385.1	.	.	downstream	upstream	mismatches	.	.	.
PRKCE	GALNT13	+/.	+/.	chr2:45706403	chr2:153899212	intron	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171132.14	ENSG00000144278.15	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BRK1(14559),VHL(29)	AL445255.1	./.	-/.	chr3:10141749	chr13:82816769	intergenic	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	.	ENSG00000286385.1	.	.	downstream	upstream	mismatches	.	.	.
AL445255.1	RIPOR1	-/.	+/.	chr13:82816769	chr16:67538098	intron	5'UTR	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000286385.1	ENSG00000039523.20	.	.	upstream	upstream	mismatches	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81683454	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
MIR4527HG	FP236383.3	+/.	+/.	chr18:47458659	chr21:8399951	intron	intron	translocation	0	0	0	0	729	low	.	.	.	.	.	ENSG00000267761.3	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SKP48(34876),AC097488.1(110458)	FP671120.4	./.	+/.	chr4:85135699	chr21:8216986	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683454	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(4)	.	.	.
INO80C(70120),GALNT1(13018)	INO80C(70168),GALNT1(12970)	./.	./.	chr18:35568099	chr18:35568147	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96198),RORB-AS1(4775)	./.	./.	chr2:234102940	chr9:74480776	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902254	chr4:94902263	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(13),merge_adjacent	.	.	.
KCNQ4	EEF1A2	+/.	-/.	chr1:40816134	chr20:63495978	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117013.17	ENSG00000101210.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	FP236383.3	./.	+/.	chr4:136763598	chr21:8397438	intergenic	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336199	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(17),low_entropy(7)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81683454	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates(4)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683454	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(4)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262490	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683454	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(4)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683454	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(4)	.	.	.
AP007216.1(6325),AP007216.2(4319)	FP236383.3	./.	+/.	chr11:69917319	chr21:8444186	intergenic	intron	translocation	0	0	0	0	765	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683454	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(4)	.	.	.
DENND3(7464),SLC45A4(3894)	ZNF462	./.	+/.	chr8:141203272	chr9:106864116	intergenic	intron	translocation	0	0	0	3	87	low	.	.	.	.	.	.	ENSG00000148143.13	.	.	downstream	downstream	mismatches(1)	.	.	.
CDHR1	LNPK(71090),EVX2(3543)	+/+	./-	chr10:84213240	chr2:176073929	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Cadherin_domain(92%)|	.	.	ENSG00000148600.15	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PRIMA1	.	-/.	./.	chr14:93720763	KI270733.1:131121	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000175785.13	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	FP236383.3	./.	+/.	chr4:136763598	chr21:8441658	intergenic	intron	translocation	0	0	0	0	76	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	Z93929.1(11490),MDM4P1(21526)	+/.	./.	chr15:81565302	chrX:17911823	intron	intergenic	translocation	0	0	0	216	25	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	downstream	low_entropy	.	.	.
GDF7	LINC00486	+/+	+/-	chr2:20667387	chr2:32916565	CDS	intron	inversion/3'-3'	0	0	0	3	1588	low	.	.	.	.	.	ENSG00000143869.7	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683454	chr15:81683469	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
AC093898.1	.	+/.	./.	chr4:18644544	KI270733.1:178391	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000286046.1	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	SEPTIN9	+/.	+/.	chr2:32916408	chr17:77311218	intron	intron	translocation	0	0	0	275	14	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184640.20	.	.	downstream	upstream	mismatches	.	.	.
CDK12	CDK12	+/.	+/.	chr17:39481626	chr17:39481695	intron	intron	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	ENSG00000167258.15	ENSG00000167258.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC016597.1	LINC00470	-/.	-/.	chr16:27692803	chr18:1313986	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000261329.6	ENSG00000132204.14	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	chr5:20674832	chr5:20674841	intron	intron	duplication/ITD	0	0	0	169	169	low	.	.	.	.	.	ENSG00000251629.7	ENSG00000251629.7	.	.	upstream	downstream	duplicates(8),low_entropy(2),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396503	chr8:22396600	intron	intron	duplication/ITD	0	0	0	306	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
THOC3	AC025580.2	-/.	+/.	chr5:175967559	chr15:45462586	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000051596.10	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TAB2(11974),ZC3H12D(23208)	TAB2(11987),ZC3H12D(23195)	./.	./.	chr6:149423587	chr6:149423600	intergenic	intergenic	duplication/ITD	0	0	0	295	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LIG4	MMP2	-/.	+/.	chr13:108215159	chr16:55433378	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174405.14	ENSG00000087245.13	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106231155	chr14:106231146	exon	exon	duplication/ITD	0	0	0	7	8	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	low_entropy(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396372	chr10:104479901	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
GALNT2	MRPS36P5(24795),LINC02461(76134)	+/.	./.	chr1:230187481	chr12:43079181	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641.10	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TYRO3(16366),AC016134.1(9502)	LINC01483	./.	+/.	chr15:41599955	chr17:69831050	intergenic	intron	translocation	0	0	0	186	8	low	.	.	.	.	.	.	ENSG00000227517.7	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGEF6	ARHGEF6	-/.	-/.	chrX:136729005	chrX:136729016	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000129675.16	ENSG00000129675.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565317	chr15:81565326	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565317	chr15:81565326	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565317	chr15:81565326	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565315	chr15:81565324	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FSTL4	AC025881.1(129815),CARS1P2(342927)	-/.	./.	chr5:133448694	chr8:114448726	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053108.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565315	chr15:81565324	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
TARBP1(44805),LINC01354(3903)	TARBP1(44818),LINC01354(3890)	./.	./.	chr1:234523984	chr1:234523997	intergenic	intergenic	duplication/ITD	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565314	chr15:81565323	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8413981	chr21:8414078	intron	intron	duplication/ITD	0	0	0	23	24	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	downstream	duplicates(7),low_entropy(13)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565314	chr15:81565323	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520835	chr7:30520921	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TPTE2P1(13480),RPL34P27(6610)	FP236383.3	./.	+/.	chr13:24981967	chr21:8397826	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565314	chr15:81565323	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GRB7	.	+/.	./.	chr17:39745629	KI270733.1:176185	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000141738.14	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565296	chr15:81565305	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
TGFBI	ZNF804B	+/.	+/.	chr5:136032777	chr7:89010290	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000120708.17	ENSG00000182348.7	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380233	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916410	chr7:77259176	intron	exon	translocation	0	0	0	275	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	mismatches	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380235	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106231134	chr14:106231149	exon	exon	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380236	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132188994	chr7:132189003	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
ZNF483	CFAP58	+/.	+/.	chr9:111561018	chr10:104396383	intron	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	ENSG00000173258.13	ENSG00000120051.15	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC091939.1	AC091939.1	+/.	+/.	chr5:158555621	chr5:158555670	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000254135.3	ENSG00000254135.3	.	.	upstream	downstream	low_entropy(2)	.	.	.
SELENOK(87724),AC115282.2(54302)	SELENOK(87761),AC115282.2(54265)	./.	./.	chr3:53979686	chr3:53979723	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	PDE1C	+/.	-/.	chr2:32916556	chr7:32119088	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000154678.18	.	.	downstream	upstream	mismatches	.	.	.
AC084759.3(20),AC084759.2(31977)	NKILA(41152),AL162291.1(141462)	./.	./.	chr15:53914732	chr20:57753932	intergenic	intergenic	translocation	0	0	0	1	15	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC142384.1	AC142384.1	+/.	+/.	chr16:33589390	chr16:33589405	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000259882.2	ENSG00000259882.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ARHGEF6	ARHGEF6	-/.	-/.	chrX:136729002	chrX:136729015	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000129675.16	ENSG00000129675.16	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC02552	.	-/.	./.	chr11:104549832	KI270733.1:176228	intron	intergenic	translocation	0	0	0	16	.	low	.	.	.	.	.	ENSG00000256422.6	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	chr7:76580348	chr7:76580407	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000205485.13	ENSG00000205485.13	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
CAPN8(10021),RNU6-1248P(14307)	CAPN8(10034),RNU6-1248P(14294)	./.	./.	chr1:223675744	chr1:223675757	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC099535.1(10333),RNU1-96P(16921)	MIR3668(50092),AL035446.2(320370)	./.	./.	chr3:27496950	chr6:140255418	intergenic	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262477	chr6:42262485	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702358	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(17),mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275786	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(29),low_entropy(5)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117434	intron	intron	duplication/ITD	0	0	0	266	266	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
RNU1-154P(711),AC239860.2(27394)	RNU1-154P(768),AC239860.2(27337)	./.	./.	chr1:145432404	chr1:145432461	intergenic	intergenic	duplication/ITD	0	0	0	188	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446333	chr12:50446346	intron	intron	duplication/ITD	0	0	0	70	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
MIR17HG(30245),GPC5(13797)	MIR17HG(30310),GPC5(13732)	./.	./.	chr13:91384824	chr13:91384889	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15852),IL2RB(278)	./.	./.	chr22:37125511	chr22:37125565	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PBX1	LINC02740(10970),AC109810.1(675084)	+/.	./.	chr1:164673790	chr11:42264691	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185630.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ASS1P4	TRAPPC9	+/+	-/+	chrX:3367600	chr8:140110814	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000213487.3	ENSG00000167632.18	.	.	downstream	upstream	homopolymer(1)	.	.	.
ADARB2	LINC02740(10970),AC109810.1(675084)	-/.	./.	chr10:1605331	chr11:42264691	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185736.16	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL355474.1(158055),MRPL50P4(29274)	AL355474.1(158107),MRPL50P4(29222)	./.	./.	chr10:59522130	chr10:59522182	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MTRNR2L12	.	-/.	./.	chr3:96618112	GL000220.1:116336	5'UTR	intergenic	translocation	0	0	0	11	.	low	.	.	.	.	.	ENSG00000269028.3	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	LYRM1(87),DNAH3(8018)	+/.	./.	chr2:32916556	chr16:20925093	intron	intergenic	translocation	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
AC078923.1	MT-RNR1	-/.	+/.	chr12:75861953	chrM:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000258077.2	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
LINC02740(10970),AC109810.1(675084)	AC022748.2	./.	+/.	chr11:42264691	chr15:78731110	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261303.6	.	.	upstream	downstream	mismatches(1)	.	.	.
ERBB4	TAFA1	-/.	+/.	chr2:212283344	chr3:68432664	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000178568.15	ENSG00000183662.11	.	.	downstream	upstream	mismatches(1)	.	.	.
LRP1B	LRP1B	-/.	-/.	chr2:141096623	chr2:141096688	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000168702.18	ENSG00000168702.18	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824764	chr12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	144	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(3),low_entropy(3),merge_adjacent	.	.	.
TAB2(11979),ZC3H12D(23203)	TAB2(11988),ZC3H12D(23194)	./.	./.	chr6:149423592	chr6:149423601	intergenic	intergenic	duplication/ITD	0	0	0	295	295	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
BCL11B(22952),AL132819.1(29650)	BCL11B(23009),AL132819.1(29593)	./.	./.	chr14:99295149	chr14:99295206	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(11)	.	.	.
AC104042.1(688040),AC061997.1(316218)	AC104042.1(688095),AC061997.1(316163)	./.	./.	chr11:37385907	chr11:37385962	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(7)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262498	chr6:42262597	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15856),IL2RB(274)	./.	./.	chr22:37125511	chr22:37125569	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(10)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491175	chr11:105491186	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
NFU1P2(125227),LINC01776(8052)	NFU1P2(125236),LINC01776(8043)	./.	./.	chr1:98202695	chr1:98202704	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC084759.3	U3(104497),GPC1(41723)	+/+	./+	chr15:53910829	chr2:240393940	exon	intergenic	translocation	0	0	0	1	16	low	.	.	.	.	.	ENSG00000280362.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP69	CFAP69	+/.	+/.	chr7:90250188	chr7:90250203	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000105792.19	ENSG00000105792.19	.	.	upstream	downstream	low_entropy(1)	.	.	.
SYT2	SYT2	-/.	-/.	chr1:202691687	chr1:202691784	intron	intron	duplication/ITD	0	0	0	13	22	low	.	.	.	.	.	ENSG00000143858.12	ENSG00000143858.12	.	.	upstream	downstream	duplicates(7),low_entropy(6)	.	.	.
BEND7	.	-/.	./.	chr10:13528386	KI270733.1:145499	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000165626.17	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	KI270733.1:176184	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
USP9YP6	USP9YP6	-/.	-/.	chrY:17913553	chrY:17913568	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000226116.1	ENSG00000226116.1	.	.	upstream	downstream	duplicates(9),low_entropy(12)	.	.	.
USP9YP34	USP9YP34	+/.	+/.	chrY:17992371	chrY:17992421	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000233378.1	ENSG00000233378.1	.	.	upstream	downstream	duplicates(6),low_entropy(5)	.	.	.
LONRF3	LONRF3	+/.	+/.	chrX:119000775	chrX:119000790	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000175556.17	ENSG00000175556.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
NXF2(27603),NXF2B(6071)	NXF2(27616),NXF2B(6058)	./.	./.	chrX:102354325	chrX:102354338	intergenic	intergenic	duplication/ITD	0	0	0	55	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679814	chr21:39679823	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	PCK1(22943),AL035541.1(8631)	+/.	./.	chr2:32916556	chr20:57591064	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479897	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
AGAP14P(7012),FAM25BP(3387)	LINC02620	./.	-/.	chr10:46365726	chr10:104479811	intergenic	intron	deletion	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193843	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046183	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(4)	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479899	intron	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046194	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(280),low_entropy(20)	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479899	chr14:82214962	intron	intergenic	translocation	0	0	0	988	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193845	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(57),low_entropy(10)	.	.	.
AC104451.2(16814),AC104297.1(109250)	RPSAP2(46116),NOP56P1(4613)	./.	./.	chr3:17762479	chr6:28779020	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479901	intron	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479901	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(13),low_entropy(28)	.	.	.
SYN3	SYN3	-/.	-/.	chr22:32814147	chr22:32814156	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000185666.15	ENSG00000185666.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479901	chr14:82214962	intron	intergenic	translocation	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	.	+/.	./.	chr21:8216920	GL000220.1:160360	intron	intergenic	translocation	0	0	0	603	.	low	.	.	.	.	.	ENSG00000278996.1	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479903	intron	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479903	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(4),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	LINC02464	./.	-/.	chr3:31295858	chr12:77280452	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000257677.2	.	.	downstream	downstream	mismatches(1)	.	.	.
SWAP70	SWAP70	+/.	+/.	chr11:9675312	chr11:9675409	intron	intron	duplication/ITD	0	0	0	1	41	low	.	.	.	.	.	ENSG00000133789.15	ENSG00000133789.15	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479807	chr10:104479905	intron	intron	duplication/ITD	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(4),merge_adjacent	.	.	.
U95743.1(127345),ERCC4(13049)	.	./.	./.	chr16:13907105	KI270733.1:177037	intergenic	intergenic	translocation	0	0	0	10	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262576	chr8:143038457	intron	intergenic	translocation	0	0	0	3473	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479907	chr14:82214962	intron	intergenic	translocation	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193835	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
AC004540.1	AC011474.1	+/.	-/.	chr7:26469977	chr19:29447568	intron	intron	translocation	0	0	0	48	53	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479891	intron	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	AL157778.1	+/.	+/.	chr3:64736203	chrX:98484564	intron	intron	translocation	0	0	0	974	24	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000281566.3	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU6-521P(183183),AC007274.3(50627)	RNU6-521P(183192),AC007274.3(50618)	./.	./.	chrY:7606341	chrY:7606350	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479896	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates	.	.	.
AC004980.1	AC004980.1	+/.	+/.	chr7:76580348	chr7:76580406	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000205485.13	ENSG00000205485.13	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479891	chr14:82214962	intron	intergenic	translocation	0	0	0	988	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC002463.1	FP671120.4	+/.	+/.	chr7:112751479	chr21:8214403	intron	intron	translocation/3'-3'	0	0	0	22	3	low	.	.	.	.	.	ENSG00000223646.2	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479893	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	C6orf99	./.	+/.	chr2:106577227	chr6:158901898	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000203711.14	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CARMIL1	SPATA31C1(16753),AL353572.2(4018)	+/.	./.	chr6:25343856	chr9:87940258	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000079691.18	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
GALNT13	AL162373.1(120295),MOB1AP1(11172)	+/.	./.	chr2:153899212	chr13:85957827	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZC3H10	RN7SL299P(31898),SIPA1L2(142922)	+/+	./-	chr12:56120983	chr1:232255043	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	RNA-binding__Nab2-type_zinc_finger(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(58%)|	.	.	ENSG00000135482.7	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193839	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(34),low_entropy(8)	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479895	intron	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
ARPP21(35590),AC104308.1(41780)	ARPP21(35603),AC104308.1(41767)	./.	./.	chr3:35830086	chr3:35830099	intergenic	intergenic	duplication/ITD	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(4)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479805	chr10:104479895	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(12),low_entropy(22)	.	.	.
ZCCHC14	LINC00683	-/.	+/.	chr16:87420184	chr18:76614088	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140948.13	ENSG00000266256.3	.	.	upstream	upstream	low_entropy(1)	.	.	.
RNU6-461P(341610),RNU1-43P(63180)	RNU6-461P(341625),RNU1-43P(63165)	./.	./.	chr3:103096780	chr3:103096795	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
DIP2A(27618),S100B(971)	DDX17(4993),DMC1(6295)	./.	./.	chr21:46597633	chr22:38512653	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NOTCH2(12178),RNU6-465P(14017)	FAT1(23086),AC108865.1(141161)	./.	./.	chr1:120112957	chr4:186749808	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CHRNB4	LSM14B	-/.	+/.	chr15:78672957	chr20:62131771	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117971.12	ENSG00000149657.20	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239799.1(36127),RNU6-1071P(14662)	FAT1(23086),AC108865.1(141161)	./.	./.	chr1:146273934	chr4:186749808	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL9P15(86816),AC073359.2(63081)	GABRA2	./.	-/.	chr3:154763935	chr4:46389862	intergenic	5'UTR	translocation	0	0	0	3	13	low	.	.	.	.	.	.	ENSG00000151834.16	.	.	downstream	downstream	low_entropy(1)	.	.	.
ADAMTS9-AS2	DTNBP1(65877),ARPC3P5(205847)	+/.	./.	chr3:64736203	chr6:15728935	intron	intergenic	translocation	0	0	0	974	654	low	.	.	.	.	.	ENSG00000241684.6	.	.	.	upstream	upstream	duplicates(21),mismatches(2)	.	.	.
NOTCH2(12178),RNU6-465P(14017)	DIP2A(27616),S100B(973)	./.	./.	chr1:120112957	chr21:46597631	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239799.1(36127),RNU6-1071P(14662)	DIP2A(27616),S100B(973)	./.	./.	chr1:146273934	chr21:46597631	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661576	chrX:133661585	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
C16orf95	DDX17(4993),DMC1(6295)	-/-	./-	chr16:87317154	chr22:38512653	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419202	chr14:106419121	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(3),merge_adjacent	.	.	.
C16orf95	AC239799.1(36127),RNU6-1071P(14662)	-/-	./-	chr16:87317152	chr1:146273934	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000260456.7	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1(23088),AC108865.1(141159)	DDX17(4993),DMC1(6295)	./.	./.	chr4:186749810	chr22:38512653	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL161910.1	FGFR2	-/.	-/.	chr9:89565042	chr10:121572779	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000285907.1	ENSG00000066468.23	.	.	downstream	downstream	mismatches(1)	.	.	.
AL353615.1(19403),SOCS5P2(73759)	MED15	./.	+/.	chr9:135373687	chr22:20548541	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000099917.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AC066580.1(39437),HRH1(6108)	TCF7L2	./.	+/.	chr3:11130985	chr10:113117431	intergenic	intron	translocation	0	0	0	0	266	low	.	.	.	.	.	.	ENSG00000148737.17	.	.	upstream	downstream	mismatches(1)	.	.	.
MARCHF3	FP236383.3	-/.	+/.	chr5:126930649	chr21:8397834	intron	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	ENSG00000173926.6	ENSG00000280441.3	.	.	upstream	upstream	homopolymer(1)	.	.	.
MAP2K5	GSE1	+/.	+/.	chr15:67732973	chr16:85627990	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000137764.20	ENSG00000131149.19	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC39A14	DENND3(7474),SLC45A4(3884)	+/.	./.	chr8:22396540	chr8:141203282	intron	intergenic	duplication	0	0	0	308	3	low	.	.	.	.	.	ENSG00000104635.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KDM6B	.	+/.	./.	chr17:7852758	GL000220.1:114264	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132510.11	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
KDM6B	FP236383.3	+/.	+/.	chr17:7852758	chr21:8397832	intron	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	ENSG00000132510.11	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	chr8:88881403	chr8:88881464	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000253553.7	ENSG00000253553.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CRX(6299),TPRX2P(10484)	CRX(6314),TPRX2P(10469)	./.	./.	chr19:47849629	chr19:47849644	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
KDM6B	FP236383.3	+/.	+/.	chr17:7852758	chr21:8442062	intron	intron	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000132510.11	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP20DC	LINC01950	-/.	-/.	chr3:59049800	chr5:106932149	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689.20	ENSG00000251027.2	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02864	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	chr18:73168245	chr21:8258619	intron	intergenic	translocation	0	0	0	0	77	low	.	.	.	.	.	ENSG00000263711.6	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MARCHF3	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	chr5:126930649	chr21:8259029	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000173926.6	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
PTPRN2	5_8S_rRNA(2088),FP236383.3(121622)	-/.	./.	chr7:158570584	chr21:8259021	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000155093.19	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046192	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479814	chr10:104479825	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC02590(3047),RNU6-242P(44559)	LINC02590(3056),RNU6-242P(44550)	./.	./.	chr2:43046829	chr2:43046838	intergenic	intergenic	duplication/ITD	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SUSD5(52300),FBXL2(5915)	NRP1	./.	-/.	chr3:33271110	chr10:33334709	intergenic	5'UTR	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000099250.18	.	.	upstream	downstream	mismatches(1)	.	.	.
KANSL1	KANSL1	-/.	-/.	chr17:46058740	chr17:46058757	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000120071.15	ENSG00000120071.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
LDB2(160),AC106894.1(74437)	LDB2(220),AC106894.1(74377)	./.	./.	chr4:16898838	chr4:16898898	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797735	chr17:57797746	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EMC10(1169),JOSD2(13958)	EMC10(1182),JOSD2(13945)	./.	./.	chr19:50492040	chr19:50492053	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
NRIP3	LINC01020	-/-	+/-	chr11:9003966	chr5:4990798	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352.11	ENSG00000215231.8	.	.	upstream	downstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275727	chr13:49275792	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC026782.1(30371),AC026782.2(10095)	AP001823.1(3452),ELMOD1(736)	./.	./.	chr5:82576681	chr11:107590355	intergenic	intergenic	translocation	0	0	0	0	685	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KANK1	LINC01168(15974),ADGRA1(78601)	+/.	./.	chr9:677771	chr10:132992328	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107104.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF15(3584),SRXN1(32633)	5_8S_rRNA(2094),FP236383.3(121616)	./.	./.	chr20:613982	chr21:8259027	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01194(30565),LINC02220(79140)	LINC01194(30576),LINC02220(79129)	./.	./.	chr5:12834928	chr5:12834939	intergenic	intergenic	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PPP2CA	.	-/.	./.	chr5:134225650	KI270733.1:131114	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000113575.10	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
BAIAP2L1(188),PPIAP82(52841)	.	./.	./.	chr7:98401278	GL000220.1:114258	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785707	chr2:101785797	intron	intron	duplication/ITD	0	0	0	765	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	same_gene	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	KI270733.1:135581	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419184	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
GLT8D2	GLT8D2	-/.	-/.	chr12:104007234	chr12:104007249	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000120820.13	ENSG00000120820.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
NR5A1	.	-/-	./-	chr9:124507410	KI270733.1:130988	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
LY6E(14631),C8orf31(746)	AP005436.1	./.	-/.	chr8:143038463	chr11:88092437	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117378	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
PPP2CA	.	-/.	./.	chr5:134225650	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000113575.10	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
TFPI(79911),LINC01090(67145)	AC140658.1	./.	-/.	chr2:187645671	chr16:33966943	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000205452.5	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419212	chr14:106419121	exon	exon	duplication/ITD	0	0	0	86	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(2),merge_adjacent	.	.	.
BAIAP2L1(188),PPIAP82(52841)	.	./.	./.	chr7:98401278	GL000220.1:158230	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785667	chr2:101785764	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BCL11B(22954),AL132819.1(29648)	BCL11B(23006),AL132819.1(29596)	./.	./.	chr14:99295151	chr14:99295203	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
PPP2CA	.	-/.	./.	chr5:134225650	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000113575.10	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC026782.1(30371),AC026782.2(10095)	LINC02620	./.	-/.	chr5:82576681	chr10:104479902	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL23AP38(51767),RPL23AP39(82058)	RPL23AP38(51780),RPL23AP39(82045)	./.	./.	chr3:1648012	chr3:1648025	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
AC026412.4	VCX3A(33696),PUDP(99051)	-/.	./.	chr5:1642425	chrX:6568814	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000288549.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	CEMIP2(21729),ABHD17B(24033)	./.	./.	chr3:103984260	chr9:71838419	intergenic	intergenic	translocation	0	0	0	6	2	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	AC005597.1	+/.	-/.	chr1:225078844	chr19:30223452	intron	intron	translocation	0	0	0	23	2	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000267223.1	.	.	upstream	upstream	mismatches(1)	.	.	.
INPP5D	MOB3B	+/.	-/.	chr2:233117636	chr9:27361005	intron	intron	translocation/5'-5'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000168918.14	ENSG00000120162.10	.	.	downstream	upstream	mismatches(1)	.	.	.
BAIAP2L1(188),PPIAP82(52841)	FP671120.4	./.	+/.	chr7:98401278	chr21:8214792	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
TCF7L2	IGH@-ext	+/.	-/.	chr10:113117383	chr14:106419215	intron	exon	translocation	0	0	0	197	86	low	.	.	.	.	.	ENSG00000148737.17	IGH.g@-ext	.	.	downstream	downstream	mismatches(1)	.	.	.
PPP2CA	5_8S_rRNA(2088),FP236383.3(121622)	-/.	./.	chr5:134225650	chr21:8259021	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000113575.10	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
BAIAP2L1(188),PPIAP82(52841)	.	./.	./.	chr7:98401278	KI270733.1:131114	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	chr12:105046150	chr12:105046194	intron	intron	duplication/5'-5'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000151131.11	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
TEC	AP003390.1(4504),AP001994.1(77177)	-/.	./.	chr4:48161435	chr11:119744127	intron	intergenic	translocation	0	0	0	0	1348	low	.	.	.	.	.	ENSG00000135605.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4501),AP001994.1(77180)	ASS1P4(31040),SNORA48B(132695)	./.	./.	chr11:119744124	chrX:3399422	intergenic	intergenic	translocation	0	0	0	1348	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MORC4(16161),EEF1A1P40(15875)	MORC4(16224),EEF1A1P40(15812)	./.	./.	chrX:107016373	chrX:107016436	intergenic	intergenic	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262469	chr6:42262480	intron	intron	duplication/ITD	0	0	0	3576	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TEC	AP003390.1(4506),AP001994.1(77175)	-/.	./.	chr4:48161435	chr11:119744129	intron	intergenic	translocation	0	0	0	0	1348	low	.	.	.	.	.	ENSG00000135605.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81565302	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
AP003390.1(4407),AP001994.1(77274)	AP003390.1(4506),AP001994.1(77175)	./.	./.	chr11:119744030	chr11:119744129	intergenic	intergenic	duplication/ITD	0	0	0	1470	1348	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TEC	AP003390.1(4516),AP001994.1(77165)	-/.	./.	chr4:48161435	chr11:119744139	intron	intergenic	translocation	0	0	0	0	1348	low	.	.	.	.	.	ENSG00000135605.13	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	TCF7L2	+/+	+/-	chr14:106419215	chr10:113117381	exon	intron	translocation/5'-5'	0	0	0	86	197	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000148737.17	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:118142	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
PIGS	MICAL3	-/.	-/.	chr17:28571019	chr22:17796198	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087111.21	ENSG00000243156.9	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	TMEM245(222),FRRS1L(10124)	+/.	./.	chr2:32916556	chr9:109120169	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021211	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(6),low_entropy(2),merge_adjacent	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419120	chr14:106419209	exon	exon	duplication/5'-5'	0	0	0	71	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021205	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(17),low_entropy(2)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	chr10:44886345	chr10:44886358	intron	intron	duplication/ITD	0	0	0	99	12	low	.	.	.	.	.	ENSG00000224812.3	ENSG00000224812.3	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC01088	LINC02620	+/.	-/.	chr4:79127531	chr10:104479893	intron	intron	translocation	0	0	0	0	988	low	.	.	.	.	.	ENSG00000249307.7	ENSG00000225768.1	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193776	chr12:16193837	intron	intron	duplication/ITD	0	0	0	125	125	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
VN1R7P(20538),AF254983.2(18486)	VN1R7P(20551),AF254983.2(18473)	./.	./.	chr21:10379158	chr21:10379171	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661288	chr4:152661297	intron	intron	duplication/ITD	0	0	0	99	10	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02458	LINC02458	-/.	-/.	chr12:89142879	chr12:89142923	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000246363.3	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
TRIQK	TRIQK	-/.	-/.	chr8:93017111	chr8:93017168	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000205133.12	ENSG00000205133.12	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC01107	LINC01107	-/.	-/.	chr2:238516802	chr2:238516851	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000225493.1	ENSG00000225493.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
COMETT	COMETT	-/.	-/.	chr7:116638071	chr7:116638080	intron	intron	duplication/ITD	0	0	0	119	0	low	.	.	.	.	.	ENSG00000231210.3	ENSG00000231210.3	.	.	upstream	downstream	duplicates(12),low_entropy(4)	.	.	.
PDE4C	GPC3	-/.	-/.	chr19:18222689	chrX:133661563	intron	intron	translocation	0	0	0	0	195	low	.	.	.	.	.	ENSG00000105650.22	ENSG00000147257.15	.	.	downstream	upstream	mismatches(1)	.	.	.
DOCK10(352123),NYAP2(5119)	RPSAP2(46083),NOP56P1(4646)	./.	./.	chr2:225394591	chr6:28778987	intergenic	intergenic	translocation	0	0	0	14	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FLJ42969(21430),AP003469.2(24308)	GPC3	./.	-/.	chr8:101097837	chrX:133661562	intergenic	intron	translocation	0	0	0	0	195	low	.	.	.	.	.	.	ENSG00000147257.15	.	.	upstream	upstream	mismatches(1)	.	.	.
PROM1(9723),AC108063.2(20132)	PROM1(9792),AC108063.2(20063)	./.	./.	chr4:16094101	chr4:16094170	intergenic	intergenic	duplication/ITD	0	0	0	54	53	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(22),low_entropy(9)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661568	chrX:133661585	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1)	.	.	.
AC087863.2	AC087863.2	-/.	-/.	chr12:118855030	chr12:118855039	intron	intron	duplication/ITD	0	0	0	39	0	low	.	.	.	.	.	ENSG00000256149.1	ENSG00000256149.1	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396381	chr10:104396390	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
PAPPA	MED15	+/.	+/.	chr9:116337689	chr22:20548543	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182752.10	ENSG00000099917.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AL359715.3(62),RPL17P25(17094)	MED15	./.	+/.	chr6:80356921	chr22:20548543	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000099917.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:160675	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LINC00486	.	+/.	./.	chr2:32916555	GL000220.1:116703	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
FAM180A(13163),AC015987.1(12545)	MED15	./.	+/.	chr7:135761976	chr22:20548541	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000099917.17	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193782	chr12:16193845	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
VXN(3267),MYBL1(40384)	VXN(3312),MYBL1(40339)	./.	./.	chr8:66521791	chr8:66521836	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
TSPY17P(152511),SRIP3(45522)	TSPY17P(152520),SRIP3(45513)	./.	./.	chrY:6673440	chrY:6673449	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22715),NRXN3(87380)	./.	./.	chr14:78082946	chr14:78082993	intergenic	intergenic	duplication/ITD	0	0	0	455	455	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPR132	.	-/-	./+	chr14:105051366	KI270733.1:133651	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(79%)|	.	.	ENSG00000183484.12	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419184	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LOXL4(18917),PYROXD2(96454)	LOXL4(18926),PYROXD2(96445)	./.	./.	chr10:98287111	chr10:98287120	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396540	chr8:22396555	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
MIR4300HG	AC126564.1(1331),RPS6P20(53214)	-/.	./.	chr11:82143176	chr12:131238854	intron	intergenic	translocation	0	0	0	719	0	low	.	.	.	.	.	ENSG00000245832.7	.	.	.	downstream	downstream	mismatches(2)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864098	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565363	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
ZFPM2	GRK1(1885),LINC00552(8890)	+/.	./.	chr8:104827532	chr13:113739621	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169946.14	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LUC7L3	.	+/.	./.	chr17:50719769	GL000220.1:155125	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RNF8	ZFPM2	+/.	+/.	chr6:37371615	chr8:104827532	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112130.17	ENSG00000169946.14	.	.	upstream	downstream	mismatches(1)	.	.	.
MYOM2(109422),AC245519.1(218902)	ZFPM2	./.	+/.	chr8:2274974	chr8:104827532	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000169946.14	.	.	upstream	downstream	mismatches(1)	.	.	.
ZFPM2	TVP23BP1	+/.	+/.	chr8:104827531	chr15:26965549	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000259122.2	.	.	downstream	upstream	mismatches(1)	.	.	.
HSBP1(1062),MLYCD(78316)	PAXBP1(176),C21orf62-AS1(132)	./.	./.	chr16:83820799	chr21:32771968	intergenic	intergenic	translocation	0	0	0	1	126	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GABRA2	GABRA2	-/-	-/-	chr4:46389796	chr4:46389857	5'UTR	5'UTR	duplication/ITD	0	0	0	13	13	low	.	.	|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)	.	.	ENSG00000151834.16	ENSG00000151834.16	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
ZFPM2	B3GALT5	+/.	+/.	chr8:104827532	chr21:39563881	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000183778.17	.	.	downstream	downstream	mismatches(1)	.	.	.
ALK	AC106870.3	-/.	-/.	chr2:29852824	chr2:29852871	intron	intron	duplication	0	0	0	1	1	low	.	.	.	.	.	ENSG00000171094.18	ENSG00000288553.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479809	chr10:104479824	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(7),low_entropy(4),merge_adjacent	.	.	.
TMEM182	FP236383.3(1402),FP236383.11(6126)	+/.	./.	chr2:102840113	chr21:8456194	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170417.16	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8403226	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
MAPRE3(5362),TMEM214(329)	ADAMTS10(1612),NFILZ(18288)	./.	./.	chr2:27032581	chr19:8612347	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZFPM2	AC021491.2	+/.	-/.	chr8:104827532	chr17:50533042	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169946.14	ENSG00000250286.2	.	.	downstream	upstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	chr21:39679856	chr21:39679875	intron	intron	duplication/ITD	0	0	0	81	81	low	.	.	.	.	.	ENSG00000225330.1	ENSG00000225330.1	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
NELL1	NELL1	+/.	+/.	chr11:21342703	chr11:21342714	intron	intron	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	ENSG00000165973.19	ENSG00000165973.19	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
RN7SKP227(23973),DCLK3(3080)	ZFPM2	./.	+/.	chr3:36709342	chr8:104827532	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000169946.14	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565343	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
SLC45A1	CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	+/.	./.	chr1:8329977	chr2:106577227	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000162426.16	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HOXC13	AC025039.1(485228),MIR3924(223220)	+/+	./+	chr12:53938996	chr10:57081259	CDS	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000123364.5	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LY6E(14635),C8orf31(742)	AP005436.1	./.	-/.	chr8:143038467	chr11:88092443	intergenic	intron	translocation	0	0	0	171	712	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	low_entropy	.	.	.
AC022613.1	CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	+/+	./-	chr15:29675292	chr2:106577227	exon	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000256802.2	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	SSU72P4(31299),SSU72P3(10483)	./.	./.	chr2:106577227	chr11:4319382	intergenic	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	PAH	./.	-/.	chr2:106577227	chr12:102957358	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000171759.10	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BCAR3	CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	-/.	./.	chr1:93582022	chr2:106577227	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000137936.18	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DHFR	.	-/.	./.	chr5:80650927	KI270733.1:175800	intron	intergenic	translocation	0	0	0	12	.	low	.	.	.	.	.	ENSG00000228716.7	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	chr8:73820102	chr21:8397816	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000280441.3	.	.	upstream	upstream	duplicates(4),homopolymer(3)	.	.	.
TMCO5B	HIVEP3	-/-	-/-	chr15:33236824	chr1:41897981	exon	intron	translocation	0	0	0	88	2	low	.	.	|Zinc_finger__C2H2_type(100%)	.	.	ENSG00000215296.10	ENSG00000127124.16	.	.	upstream	downstream	mismatches(1)	.	.	.
CD8B2(32930),AC108868.2(32930),EEF1A1P12(120104)	EPHB3(21883),MAGEF1(106073)	./.	./.	chr2:106577227	chr3:184604291	intergenic	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NOS1	JARID2	-/-	+/-	chr12:117265422	chr6:15368984	CDS	intron	translocation/5'-5'	1	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250.19	ENSG00000008083.14	.	.	upstream	downstream	duplicates(1),min_support	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308651	chr3:19308662	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(7),low_entropy(2),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565300	chr15:81565309	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	GSE1	./.	+/.	chr1:148724716	chr16:85260115	intergenic	intron	translocation	0	0	0	1	2	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	downstream	upstream	mismatches(1)	.	.	.
PRDM1	.	+/+	./+	chr6:106098661	KI270733.1:131114	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ILKAP	.	-/.	./.	chr2:238203140	KI270733.1:137209	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132323.9	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	AC092275.1	./.	+/.	chr1:148724716	chr16:85260115	intergenic	intron	translocation	0	0	0	1	2	low	.	.	.	.	.	.	ENSG00000287787.1	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGA2	ADAMTS9-AS2	+/+	+/+	chr12:65824760	chr3:64736203	5'UTR	intron	translocation	0	0	0	145	974	low	.	.	.	.	.	ENSG00000149948.14	ENSG00000241684.6	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	GSE1	./.	+/.	chr1:146273933	chr16:85260115	intergenic	intron	translocation	0	0	0	1	2	low	.	.	.	.	.	.	ENSG00000131149.19	.	.	downstream	upstream	mismatches(1)	.	.	.
NUS1P4(12376),CYCSP35(6434)	LINC02594	./.	+/.	chr13:98623252	chr17:43679882	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000267440.2	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	AC092275.1	./.	+/.	chr1:146273933	chr16:85260115	intergenic	intron	translocation	0	0	0	1	2	low	.	.	.	.	.	.	ENSG00000287787.1	.	.	downstream	upstream	mismatches(1)	.	.	.
WWC1	AC100849.1	+/.	-/.	chr5:168337916	chr8:19172722	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000113645.15	ENSG00000253557.6	.	.	upstream	downstream	mismatches(1)	.	.	.
SIM1	EXOC4	-/.	+/.	chr6:100458071	chr7:133777295	intron	intron	translocation	0	0	0	69	0	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000131558.15	.	.	downstream	downstream	mismatches(1)	.	.	.
TRDMT1(10817),VIM-AS1(1368)	TRDMT1(10826),VIM-AS1(1359)	./.	./.	chr10:17212871	chr10:17212880	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AL358053.1(206649),AL591644.1(221032)	AL358053.1(206660),AL591644.1(221021)	./.	./.	chr9:1756752	chr9:1756763	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC106793.1	AC106793.1	+/.	+/.	chr16:58830258	chr16:58830321	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000245768.7	ENSG00000245768.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SKA3	MT-RNR1	-/.	+/.	chr13:21155652	chrM:1503	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000165480.16	ENSG00000211459.2	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419184	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(4),low_entropy(2)	.	.	.
GCNT1	UNC79	+/.	+/.	chr9:76574294	chr14:93451852	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000187210.14	ENSG00000133958.13	.	.	downstream	upstream	mismatches(1)	.	.	.
NXF2(27607),NXF2B(6067)	NXF2(27616),NXF2B(6058)	./.	./.	chrX:102354329	chrX:102354338	intergenic	intergenic	duplication/ITD	0	0	0	55	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419121	chr14:106419192	exon	exon	duplication/5'-5'	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(3)	.	.	.
LINC00486	DRG1	+/.	+/.	chr2:32916556	chr22:31490013	intron	intron	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000185721.13	.	.	downstream	upstream	mismatches	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106231128	chr14:106231186	exon	exon	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419192	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(3)	.	.	.
LINC01877	TRERF1	+/.	-/.	chr2:199744426	chr6:42262600	intron	intron	translocation	0	0	0	0	2501	low	.	.	.	.	.	ENSG00000238217.6	ENSG00000124496.12	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM20C	AC124947.1	+/+	-/-	chr7:193661	chr12:93375531	CDS	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000177706.9	ENSG00000257252.6	.	.	downstream	downstream	mismatches(1)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419182	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	PISD	./.	-/.	chr3:31295858	chr22:31622859	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000241878.11	.	.	downstream	downstream	mismatches(1)	.	.	.
AC006458.1(129546),AGMO(2120)	AC006458.1(129596),AGMO(2070)	./.	./.	chr7:15198197	chr7:15198247	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
LINC00498	LINC00498	-/.	-/.	chr4:138299706	chr4:138299768	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000248397.1	ENSG00000248397.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419182	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916546	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC00486	EIF4ENIF1	+/.	-/.	chr2:32916556	chr22:31490013	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184708.18	.	.	downstream	upstream	mismatches	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106231128	chr14:106231186	exon	exon	duplication/5'-5'	0	0	0	8	8	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC126544.2(3620),AC126544.1(622)	TOP1	./.	+/.	chr17:45591999	chr20:41034526	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000198900.7	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158324	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LRRC36	LRRC36	+/.	+/.	chr16:67331070	chr16:67331079	intron	intron	duplication/ITD	0	0	0	25	0	low	.	.	.	.	.	ENSG00000159708.18	ENSG00000159708.18	.	.	upstream	downstream	duplicates(12),low_entropy(7)	.	.	.
HECW1	HECW1	+/.	+/.	chr7:43336117	chr7:43336175	intron	intron	duplication/ITD	0	0	0	36	38	low	.	.	.	.	.	ENSG00000002746.15	ENSG00000002746.15	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
QRFPR	QRFPR	-/.	-/.	chr4:121380187	chr4:121380248	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000186867.11	ENSG00000186867.11	.	.	upstream	downstream	duplicates(7),low_entropy(8)	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106231128	chr14:106231192	exon	exon	duplication/5'-5'	0	0	0	8	8	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
AADACL3(16818),C1orf158(622)	MYH11	./.	-/.	chr1:12745578	chr16:15855645	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000133392.18	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092433	chr21:8447433	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
SLC15A5	SLC15A5	-/.	-/.	chr12:16193779	chr12:16193842	intron	intron	duplication/ITD	0	0	0	125	114	low	.	.	.	.	.	ENSG00000188991.3	ENSG00000188991.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092435	chr21:8447433	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8447433	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479896	intron	intron	translocation/3'-3'	0	0	0	334	988	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	duplicates	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8447433	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8447433	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8447433	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479801	chr11:88092445	intron	intron	translocation	0	0	0	984	712	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	low_entropy	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092435	chr21:8403958	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392891	chr11:88092437	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
CD109(58254),AL590552.1(84776)	CD109(58311),AL590552.1(84719)	./.	./.	chr6:73886570	chr6:73886627	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092437	chr21:8403958	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
SGK3	RANGAP1	+/.	-/.	chr8:66718919	chr22:41248709	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104205.16	ENSG00000100401.20	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	AL160254.1	-/.	+/.	chr6:42262599	chr13:67141436	intron	intron	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000285588.1	.	.	downstream	downstream	mismatches(1)	.	.	.
RUFY4(18119),CXCR2(16589)	FAT1(23086),AC108865.1(141161)	./.	./.	chr2:218108700	chr4:186749808	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8403958	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	FP236383.3	+/.	+/.	chr21:8444186	chr21:8444189	intron	intron	inversion/3'-3'	0	0	0	765	765	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000280441.3	.	.	upstream	upstream	hairpin(1)	.	.	.
FXNP1(22670),NRXN3(87425)	FXNP1(22769),NRXN3(87326)	./.	./.	chr14:78082948	chr14:78083047	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8403958	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL355674.1(96212),RORB-AS1(4761)	PAXBP1(157),C21orf62-AS1(151)	./.	./.	chr9:74480790	chr21:32771949	intergenic	intergenic	translocation	0	0	0	89	759	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR3663HG(22835),RPL12P26(4225)	MIR3663HG(22844),RPL12P26(4216)	./.	./.	chr10:117191943	chr10:117191952	intergenic	intergenic	duplication/ITD	0	0	0	14	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CEBPE	LINC00486	-/-	+/-	chr14:23117710	chr2:32916554	CDS	intron	translocation/5'-5'	0	0	0	43	1606	low	.	.	Basic_region_leucine_zipper(8%)|	.	.	ENSG00000092067.6	ENSG00000230876.8	.	.	upstream	downstream	duplicates	.	.	.
AL627316.1	FP236383.3	-/.	+/.	chr1:90392796	chr21:8448165	intron	intron	translocation/5'-5'	0	0	0	326	13	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000280441.3	.	.	upstream	downstream	mismatches	.	.	.
CTSO(48329),FTH1P21(4237)	AC102941.2(4644),AC022613.1(864)	./.	./.	chr4:156002241	chr15:29674126	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092435	chr21:8448165	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
CYP2A7	AL133464.1(41586),LINC00261(34528)	-/.	./.	chr19:40880795	chr20:22513143	intron	intergenic	translocation	0	0	0	22	0	low	.	.	.	.	.	ENSG00000198077.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092435	chr21:8403226	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661623	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661289	chr4:152661298	intron	intron	duplication/ITD	0	0	0	99	10	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092443	chr21:8448165	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158255	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
RNU7-66P(128430),AL591004.1(353074)	.	./.	./.	chr6:66857334	GL000220.1:114258	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092433	chr21:8220959	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
LINC02590(3042),RNU6-242P(44564)	LINC02590(3057),RNU6-242P(44549)	./.	./.	chr2:43046824	chr2:43046839	intergenic	intergenic	duplication/ITD	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(4)	.	.	.
DOCK10(352123),NYAP2(5119)	DOCK10(352138),NYAP2(5104)	./.	./.	chr2:225394591	chr2:225394606	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(4)	.	.	.
AP005436.1	FP671120.4	-/.	+/.	chr11:88092445	chr21:8220959	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000278996.1	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	LINC02620	-/.	-/.	chr1:90392887	chr10:104479904	intron	intron	translocation/3'-3'	0	0	0	334	855	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000225768.1	.	.	downstream	downstream	duplicates	.	.	.
PLA2G7	PLA2G7	-/.	-/.	chr6:46734431	chr6:46734440	intron	intron	duplication/ITD	0	0	0	49	46	low	.	.	.	.	.	ENSG00000146070.17	ENSG00000146070.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392796	chr11:88092338	intron	intron	translocation/5'-5'	0	0	0	326	783	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	upstream	upstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092338	chr11:88092435	intron	intron	duplication/ITD	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092338	chr11:88092439	intron	intron	duplication	0	0	0	783	838	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661571	chrX:133661580	intron	intron	duplication/ITD	0	0	0	195	4	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419147	chr14:106419156	exon	exon	duplication/3'-3'	0	0	0	92	71	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092338	chr11:88092443	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092439	chr21:8403226	intron	intron	translocation	0	0	0	838	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
SFRP1(2484),SNORD65B(114698)	C10orf143	./.	-/.	chr8:41311957	chr10:130103976	intergenic	intron	translocation	0	0	0	7	3	low	.	.	.	.	.	.	ENSG00000237489.5	.	.	upstream	upstream	mismatches(1)	.	.	.
AL627316.1	FP236383.3	-/.	+/.	chr1:90392796	chr21:8447433	intron	intron	translocation/5'-5'	0	0	0	326	13	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000280441.3	.	.	upstream	downstream	mismatches	.	.	.
PIGL	PIGL	+/.	+/.	chr17:16258070	chr17:16258081	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000108474.17	ENSG00000108474.17	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC060765.2(672),AC105031.1(16813)	FP236383.3	./.	+/.	chr8:82962598	chr21:8399951	intergenic	intron	translocation	0	0	0	6	729	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021198	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565305	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(12),low_entropy(10)	.	.	.
AC022215.2	PXYLP1	-/.	+/.	chr3:141268163	chr3:141268207	intron	intron	duplication/5'-5'	0	0	0	9	9	low	.	.	.	.	.	ENSG00000287155.1	ENSG00000155893.13	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
MIR4643(31893),CASC6(3662)	RPL35P9(32758),EFNB2(30865)	./.	./.	chr6:91553630	chr13:106458880	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BTF3L4P3(8114),AL356234.2(105512)	.	./.	./.	chr6:137552486	GL000220.1:116388	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RPL35P9(32758),EFNB2(30865)	TNRC6A	./.	+/.	chr13:106458880	chr16:24795277	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000090905.19	.	.	upstream	upstream	mismatches(1)	.	.	.
CNIH2	GRPEL2P1(60345),AL162573.1(102670)	+/+	./+	chr11:66278295	chr13:89039130	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174871.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	EFNB1(4569),PJA1(314122)	+/.	./.	chr21:8442304	chrX:68846729	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000280441.3	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC002383.1(55093),RNU6-274P(202609)	AC002383.1(55106),RNU6-274P(202596)	./.	./.	chr7:89552011	chr7:89552024	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LIPG(20228),SMUG1P1(30937)	APCDD1L-DT	./.	+/.	chr18:49619413	chr20:58548893	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000231290.6	.	.	downstream	downstream	mismatches(1)	.	.	.
AC099542.2(24578),AC099542.1(13087)	AC099542.2(24641),AC099542.1(13024)	./.	./.	chr3:81233492	chr3:81233555	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
FGFR1(15353),C8orf86(26647)	LINC01153(144612),RN7SKP167(80338)	./.	./.	chr8:38484187	chr10:121330578	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	chr10:3470843	chr10:3470935	intron	intron	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	ENSG00000233321.2	ENSG00000233321.2	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
LIPG(20228),SMUG1P1(30937)	TEX101P1(59553),XRCC6P5(2430)	./.	./.	chr18:49619413	chrX:99716934	intergenic	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ANKRD50(154547),FAT4(447639)	YLPM1	./.	+/.	chr4:124867279	chr14:74840569	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000119596.18	.	.	upstream	upstream	mismatches(1)	.	.	.
AC108467.1(7074),THAP12P9(264527)	AC108467.1(7107),THAP12P9(264494)	./.	./.	chr4:45058726	chr4:45058759	intergenic	intergenic	duplication/ITD	0	0	0	223	223	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
DDB2	IL3RA	+/.	+/.	chr11:47233105	chrX:1354864	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	ENSG00000185291.12	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864102	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GALNT13	AC099535.1(10332),RNU1-96P(16922)	+/.	./.	chr2:153899212	chr3:27496949	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPSAP2(46115),NOP56P1(4614)	AC005921.1(11315),WFIKKN2(25684)	./.	./.	chr6:28779019	chr17:50808966	intergenic	intergenic	translocation	0	0	0	22	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF462	MRE11	+/.	-/.	chr9:106864106	chr11:94419495	intron	3'UTR	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000020922.13	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143111	chr11:82143120	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL627316.1	FP236383.3	-/.	+/.	chr1:90392796	chr21:8403958	intron	intron	translocation/5'-5'	0	0	0	326	13	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000280441.3	.	.	upstream	downstream	mismatches	.	.	.
TRERF1	MID1IP1(102282),RNU6-591P(172361)	-/.	./.	chr6:42262598	chrX:38908819	intron	intergenic	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF462	MRE11	+/.	-/.	chr9:106864108	chr11:94419495	intron	3'UTR	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000020922.13	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864033	chr9:106864110	intron	intron	duplication/ITD	0	0	0	86	87	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC034102.6	LINC00355(330731),LGMNP1(551322)	-/.	./.	chr12:56120985	chr13:64406775	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000258317.1	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	TECTA	+/.	+/.	chr2:32916568	chr11:121153181	intron	intron	translocation	0	0	0	1588	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000109927.11	.	.	downstream	upstream	low_entropy	.	.	.
GPM6A	LINC00273(625),RNA5-8SP2(2298)	-/.	./.	chr4:175671721	chr16:34160661	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000150625.16	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PGAM4P2(38320),KRT18P21(117568)	NUP98	./.	-/.	chr4:115803139	chr11:3702357	intergenic	intron	translocation	0	0	0	18	437	low	.	.	.	.	.	.	ENSG00000110713.17	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02554	LINC02554	+/.	+/.	chr22:27316603	chr22:27316616	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000226741.2	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
GALNT10	CACNA1I(6529),ENTHD1(46780)	+/.	./.	chr5:154268430	chr22:39696264	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164574.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC22A23(42241),AL033523.1(85810)	RANBP10	./.	-/.	chr6:3499291	chr16:67737095	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000141084.11	.	.	downstream	downstream	mismatches(1)	.	.	.
GALNT10	RANBP10	+/.	-/.	chr5:154268430	chr16:67737095	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164574.16	ENSG00000141084.11	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01779(44712),U3(67653)	RNU6-889P(6705),AL441943.2(45506)	./.	./.	chr1:116210953	chr10:2104974	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	NDUFB9P3(84563),LINC01608(5539)	./.	./.	chr2:240393940	chr8:110894457	intergenic	intergenic	translocation	0	0	0	16	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093898.1	FP671120.4	+/.	+/.	chr4:18644544	chr21:8216986	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286046.1	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM214B	RNU6-889P(6705),AL441943.2(45506)	-/.	./.	chr9:35110205	chr10:2104974	5'UTR	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000005238.20	.	.	.	downstream	downstream	mismatches(1)	.	.	.
C1QTNF12	CBWD4P(62437),FP326651.1(197)	-/.	./.	chr1:1245901	chr9:65385452	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000184163.3	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC22A23(42241),AL033523.1(85810)	FAM214B	./.	-/.	chr6:3499291	chr9:35110205	intergenic	5'UTR	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000005238.20	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM214B	PGAP4	-/.	-/.	chr9:35110205	chr9:101512105	5'UTR	intron	inversion/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000005238.20	ENSG00000165152.9	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	chr8:73820102	chr21:8397815	intron	intron	translocation	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000104343.21	ENSG00000280441.3	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
MGAT5B	AC008798.1(9216),AC008507.3(4777)	+/.	./.	chr17:76868639	chr19:29911085	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167889.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01342(13934),MIR200B(9114)	OPHN1	./.	-/.	chr1:1157990	chrX:67962334	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000079482.14	.	.	upstream	downstream	mismatches(1)	.	.	.
RABGAP1L-DT	MAP4K4	-/.	+/.	chr1:174121817	chr2:101785791	intron	intron	translocation	0	0	0	0	710	low	.	.	.	.	.	ENSG00000227373.6	ENSG00000071054.16	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01342(13934),MIR200B(9114)	SLC22A23(42241),AL033523.1(85810)	./.	./.	chr1:1157990	chr6:3499291	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR5100(1036),RET(78347)	.	./.	./.	chr10:42998717	GL000220.1:114252	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
LINC01342(13934),MIR200B(9114)	GALNT10	./.	+/.	chr1:1157990	chr5:154268430	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164574.16	.	.	upstream	upstream	mismatches(1)	.	.	.
EPHA8	.	+/.	./.	chr1:22588283	KI270733.1:131005	intron	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000070886.12	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC01342(13934),MIR200B(9114)	AL451061.1(55887),PLEKHG1(33696)	./.	./.	chr1:1157990	chr6:150566187	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916409	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
KRT8P37(31729),CHCHD3P1(73098)	KRT8P37(31788),CHCHD3P1(73039)	./.	./.	chr10:8546835	chr10:8546894	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PRIMA1	5_8S_rRNA(2095),FP236383.3(121615)	-/.	./.	chr14:93720763	chr21:8259028	3'UTR	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000175785.13	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC244453.1	VPS54(36311),AC012368.2(30614)	+/.	./.	chr1:121130765	chr2:64055739	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000227193.2	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01779(44712),U3(67653)	SLC22A23(42241),AL033523.1(85810)	./.	./.	chr1:116210953	chr6:3499291	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01342(13934),MIR200B(9114)	PGAP4	./.	-/.	chr1:1157990	chr9:101512105	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000165152.9	.	.	upstream	downstream	mismatches(1)	.	.	.
CD47	CEP162(5479),LINC01611(187906)	-/.	./.	chr3:108049094	chr6:84233122	intron	intergenic	translocation	0	0	0	22	2	low	.	.	.	.	.	ENSG00000196776.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092910.3	DAAM1(45879),GPR135(11738)	+/.	./.	chr3:120125715	chr14:59417284	intron	intergenic	translocation	0	0	0	306	20	low	.	.	.	.	.	ENSG00000242622.2	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CCDC200	LINC02864	-/.	-/.	chr17:43251352	chr18:73168244	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000236383.8	ENSG00000263711.6	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01779(44712),U3(67653)	AL451061.1(55887),PLEKHG1(33696)	./.	./.	chr1:116210953	chr6:150566187	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR157(17214),MIR34AHG(1695)	CR392039.1(648),CR392039.3(8418)	./.	./.	chr1:9146316	chr21:8988078	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01779(44712),U3(67653)	PGAP4	./.	-/.	chr1:116210953	chr9:101512105	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000165152.9	.	.	downstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138625	chrX:31138636	intron	intron	duplication/ITD	0	0	0	95	0	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CACNA1I(6529),ENTHD1(46780)	OPHN1	./.	-/.	chr22:39696264	chrX:67962334	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000079482.14	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6-889P(6705),AL441943.2(45506)	CACNA1I(6529),ENTHD1(46780)	./.	./.	chr10:2104974	chr22:39696264	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KDM4B	ARHGEF18	+/.	+/.	chr19:5090367	chr19:7394968	intron	intron	duplication	0	1	0	19	1	low	.	.	.	.	.	ENSG00000127663.15	ENSG00000104880.19	.	.	upstream	downstream	min_support	.	.	.
PTPRN2	FP236383.3	-/.	+/.	chr7:158570584	chr21:8397826	intron	intron	translocation/3'-3'	0	0	0	0	450	low	.	.	.	.	.	ENSG00000155093.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
PTPRN2	FP236383.3	-/.	+/.	chr7:158570584	chr21:8442056	intron	intron	translocation/3'-3'	0	0	0	0	2539	low	.	.	.	.	.	ENSG00000155093.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269682	chr14:77269780	intron	intron	duplication/ITD	0	0	0	20	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
PTPRN2	.	-/.	./.	chr7:158570584	KI270733.1:176193	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000155093.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
PTPRN2	.	-/.	./.	chr7:158570584	GL000220.1:158230	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000155093.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC097459.1	EMCN	+/.	-/.	chr4:100459169	chr4:100459184	intron	intron	duplication/3'-3'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000286150.1	ENSG00000164035.10	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
LINC01392(192678),POLR2DP2(79334)	LINC01392(192693),POLR2DP2(79319)	./.	./.	chr7:115424033	chr7:115424048	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CACNB2	CACNB2	+/.	+/.	chr10:18358494	chr10:18358571	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000165995.22	ENSG00000165995.22	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565300	chr15:81683524	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262501	chr6:42262510	intron	intron	duplication/ITD	0	0	0	3754	3576	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
SFN(3785),GPN2(7891)	SFN(3854),GPN2(7822)	./.	./.	chr1:26868241	chr1:26868310	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CYP2A7	CYP2A7	-/.	-/.	chr19:40880790	chr19:40880861	intron	intron	duplication/ITD	0	0	0	22	21	low	.	.	.	.	.	ENSG00000198077.11	ENSG00000198077.11	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262466	chr6:42262483	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143079	chr11:82143176	intron	intron	duplication/ITD	0	0	0	654	719	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(6),low_entropy(2),merge_adjacent	.	.	.
AC092422.1	AC092422.1	+/.	+/.	chr3:24966602	chr3:24966621	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000237838.1	ENSG00000237838.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC021146.5	.	-/.	./.	chr4:68986258	GL000220.1:113856	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000249735.1	.	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
AL133338.2(218450),GRIK2(72469)	MT-RNR1	./.	+/.	chr6:101108788	chrM:1504	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565352	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
EBF2(344),RNA5SP258(91123)	.	./.	./.	chr8:26045757	GL000220.1:158223	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565352	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
BAG4(910),AC084024.4(9746)	BAG4(961),AC084024.4(9695)	./.	./.	chr8:38214211	chr8:38214262	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565288	chr15:81565352	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8397913	intron	intron	translocation	0	0	0	1606	64	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396379	chr10:104396388	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AC025470.2	.	+/.	./.	chr5:57533339	KI270733.1:131114	exon	intergenic	translocation	0	0	0	6	.	low	.	.	.	.	.	ENSG00000250961.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02552	FP236383.3	-/.	+/.	chr11:104549832	chr21:8442091	intron	intron	translocation	0	0	0	16	23	low	.	.	.	.	.	ENSG00000256422.6	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CARMIL1	FASN	+/.	-/.	chr6:25343856	chr17:82097715	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000079691.18	ENSG00000169710.9	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC023034.1	GPC3	+/.	-/.	chr15:81683520	chrX:133661569	intron	intron	translocation/5'-5'	0	0	0	149	195	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000147257.15	.	.	downstream	upstream	low_entropy	.	.	.
AC104136.1	SPATA31C1(16753),AL353572.2(4018)	-/.	./.	chr4:136004548	chr9:87940258	exon	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000251492.1	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
EDEM3(23136),NIBAN1(12681)	SOD2	./.	-/.	chr1:184778043	chr6:159693344	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000112096.19	.	.	downstream	downstream	mismatches(1)	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	KI270733.1:175798	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
IGF2	FP236383.3	-/.	+/.	chr11:2138068	chr21:8397709	intron	intron	translocation/5'-5'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000167244.21	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275727	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(31),low_entropy(5)	.	.	.
LINGO2	LINGO2	-/.	-/.	chr9:28431030	chr9:28431045	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000174482.10	ENSG00000174482.10	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
CMAHP	AL353572.4(35734),SPATA31C2(16596)	-/.	./.	chr6:25343856	chr9:88112709	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
CARMIL1	OPHN1	+/.	-/.	chr6:25343856	chrX:68084366	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000079691.18	ENSG00000079482.14	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565357	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
MED15P4(5303),AC093838.1(12716)	CARMIL1	./.	+/.	chr2:131542291	chr6:25343856	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000079691.18	.	.	upstream	downstream	homopolymer(1)	.	.	.
CMAHP	SPATA31C1(16753),AL353572.2(4018)	-/.	./.	chr6:25343856	chr9:87940258	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168405.17	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00940	.	-/.	./.	chr12:1933581	KI270733.1:128008	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000235049.1	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275719	chr13:49275776	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(8),low_entropy(2),merge_adjacent	.	.	.
TUBBP11(353348),RAP1BP2(78779)	RNA5SP349(5010),SNORD39(137498)	./.	./.	chr3:103984260	chr11:109125996	intergenic	intergenic	translocation	0	0	0	6	9	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143108	chr11:82143117	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(20),low_entropy(5)	.	.	.
RPL36AP54(1394),MIR450B(15801)	RPL36AP54(1408),MIR450B(15787)	./.	./.	chrX:134524384	chrX:134524398	intergenic	intergenic	duplication/ITD	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143082	chr11:82143091	intron	intron	duplication/ITD	0	0	0	748	257	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TSHZ3	LINC01791	-/.	+/.	chr19:31183173	chr19:31183227	intron	intron	duplication/5'-5'	0	0	0	64	64	low	.	.	.	.	.	ENSG00000121297.8	ENSG00000267777.2	.	.	upstream	downstream	duplicates(47),low_entropy(7)	.	.	.
USP9YP6	USP9YP6	-/.	-/.	chrY:17913555	chrY:17913568	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000226116.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396372	chr10:104479905	intron	intron	duplication/3'-3'	0	0	0	217	855	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	ARMC10P1(265465),AC140059.1(162675)	+/.	./.	chr2:32916556	chr3:94773085	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
KIAA1217	TMEM132B	+/.	+/.	chr10:24208937	chr12:125495237	5'UTR	intron	translocation/3'-3'	0	0	0	1	7	low	.	.	.	.	.	ENSG00000120549.18	ENSG00000139364.10	.	.	upstream	upstream	mismatches(1)	.	.	.
PAXBP1(75),C21orf62-AS1(233)	PAXBP1(174),C21orf62-AS1(134)	./.	./.	chr21:32771867	chr21:32771966	intergenic	intergenic	duplication/ITD	0	0	0	760	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),low_entropy(2)	.	.	.
PRMT8	PAXBP1(170),C21orf62-AS1(138)	+/.	./.	chr12:3490676	chr21:32771962	intron	intergenic	translocation	0	0	0	0	126	low	.	.	.	.	.	ENSG00000111218.12	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	chr5:103482858	chr15:45462231	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000226926.7	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PAXBP1(71),C21orf62-AS1(237)	PAXBP1(170),C21orf62-AS1(138)	./.	./.	chr21:32771863	chr21:32771962	intergenic	intergenic	duplication/ITD	0	0	0	760	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NUP98	SMAGP	-/.	-/.	chr11:3702365	chr12:51248435	intron	intron	translocation	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000170545.17	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAXBP1(165),C21orf62-AS1(143)	DMD	./.	-/.	chr21:32771957	chrX:31943879	intergenic	intron	translocation	0	0	0	759	6	low	.	.	.	.	.	.	ENSG00000198947.17	.	.	downstream	upstream	mismatches(1)	.	.	.
NUDT16(6453),AC107027.3(59843)	PAXBP1(176),C21orf62-AS1(132)	./.	./.	chr3:131395283	chr21:32771968	intergenic	intergenic	translocation	0	0	0	0	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP007216.1(6233),AP007216.2(4411)	FP236383.3	./.	+/.	chr11:69917227	chr21:8399951	intergenic	intron	translocation	0	0	0	0	729	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
AC094105.2(149670),LINC01377(60210)	AC094105.2(149741),LINC01377(60139)	./.	./.	chr5:3117625	chr5:3117696	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01524	PAXBP1(167),C21orf62-AS1(141)	+/.	./.	chr20:52204616	chr21:32771959	intron	intergenic	translocation	0	0	0	6	759	low	.	.	.	.	.	ENSG00000234948.2	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01524	LINC01524	+/.	+/.	chr20:52204567	chr20:52204616	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000234948.2	ENSG00000234948.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
OTX2P1(77427),PCSK5(88642)	OTX2P1(77486),PCSK5(88583)	./.	./.	chr9:75802002	chr9:75802061	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC010202.1(135083),LINC00485(160542)	AC010202.1(135094),LINC00485(160531)	./.	./.	chr12:102648738	chr12:102648749	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565352	chr15:81565363	intron	intron	duplication	0	0	0	0	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC010202.1(135079),LINC00485(160546)	AC010202.1(135094),LINC00485(160531)	./.	./.	chr12:102648734	chr12:102648749	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
UGT3A2	UGT3A2	-/.	-/.	chr5:36067823	chr5:36067838	intron	intron	duplication/ITD	0	0	0	3	1	low	.	.	.	.	.	ENSG00000168671.10	ENSG00000168671.10	.	.	upstream	downstream	low_entropy(2)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661624	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
EGFR	TPTE2P1	+/.	-/.	chr7:55019534	chr13:24931821	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000146648.19	ENSG00000253771.6	.	.	downstream	downstream	mismatches(1)	.	.	.
ITGB1	NODAL(30777),PALD1(39)	-/.	./.	chr10:32888382	chr10:70478728	3'UTR	intergenic	deletion	0	0	0	1	0	low	.	.	.	.	.	ENSG00000150093.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565307	chr15:81565316	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
POU6F2(12330),AC011290.1(40221)	TYRO3(16342),AC016134.1(9526)	./.	./.	chr7:39505425	chr15:41599931	intergenic	intergenic	translocation	0	0	0	23	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	HLCS	+/.	-/.	chr21:8209536	chr21:36792523	intron	intron	inversion	0	0	0	11	0	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000159267.16	.	.	downstream	downstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	chr12:65824728	chr12:65824719	5'UTR	5'UTR	duplication/ITD	0	0	0	143	145	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948.14	ENSG00000149948.14	.	.	downstream	upstream	duplicates(1)	.	.	.
AL606468.1(18421),LINC02608(16598)	AC025580.2	./.	+/.	chr1:212208680	chr15:45462779	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000259354.5	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	chr1:148280037	chr1:148280046	intron	intron	duplication/ITD	0	0	0	142	133	low	.	.	.	.	.	ENSG00000234283.1	ENSG00000234283.1	.	.	upstream	downstream	low_entropy(2)	.	.	.
PAXBP1(79),C21orf62-AS1(229)	PAXBP1(178),C21orf62-AS1(130)	./.	./.	chr21:32771871	chr21:32771970	intergenic	intergenic	duplication/ITD	0	0	0	760	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
AC016735.1(19234),LINC01819(2529)	AL355674.1(96212),RORB-AS1(4761)	./.	./.	chr2:43025294	chr9:74480790	intergenic	intergenic	translocation	0	0	0	1	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092810.3(12416),AC092810.2(20385)	AL355674.1(96212),RORB-AS1(4761)	./.	./.	chr1:209126835	chr9:74480790	intergenic	intergenic	translocation	0	0	0	0	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092810.3(12415),AC092810.2(20386)	DMD	./.	-/.	chr1:209126834	chrX:31943872	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000198947.17	.	.	upstream	upstream	mismatches(1)	.	.	.
AL020994.1	AL050402.1(52848),AL133456.1(50931)	-/.	./.	chr22:27316602	chr22:27512908	intron	intergenic	duplication	0	0	0	13	1	low	.	.	.	.	.	ENSG00000223726.1	.	.	.	upstream	downstream	duplicates(1)	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491183	chr11:105491192	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
USP9YP6	USP9YP6	-/.	-/.	chrY:17913557	chrY:17913568	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000226116.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
PAXBP1(81),C21orf62-AS1(227)	PAXBP1(180),C21orf62-AS1(128)	./.	./.	chr21:32771873	chr21:32771972	intergenic	intergenic	duplication/ITD	0	0	0	760	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
NR5A1	.	-/-	./+	chr9:124507406	GL000220.1:107336	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PAXBP1(73),C21orf62-AS1(235)	PAXBP1(172),C21orf62-AS1(136)	./.	./.	chr21:32771865	chr21:32771964	intergenic	intergenic	duplication/ITD	0	0	0	760	126	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TCF7L2	DDX6P2(70759),AL445207.1(54961)	+/.	./.	chr10:113117371	chr13:86348021	intron	intergenic	translocation	0	0	0	266	3	low	.	.	.	.	.	ENSG00000148737.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
VPS54(36311),AC012368.2(30614)	COG6(8906),CDKN2AIPNLP3(17170)	./.	./.	chr2:64055739	chr13:39800571	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM207BP(9548),GXYLT1P1(17360)	PAXBP1(180),C21orf62-AS1(128)	./.	./.	chr13:18707055	chr21:32771972	intergenic	intergenic	translocation	0	0	0	11	126	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916410	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
LINC01020	AC093627.22	+/.	-/.	chr5:4990798	chr7:117612	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000215231.8	ENSG00000287883.1	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308666	chr3:19308675	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
PAXBP1(178),C21orf62-AS1(130)	RUNX1	./.	-/.	chr21:32771970	chr21:35093042	intergenic	intron	inversion	0	0	0	126	4	low	.	.	.	.	.	.	ENSG00000159216.19	.	.	downstream	downstream	mismatches(1)	.	.	.
CASC2	RABEP2	+/.	-/.	chr10:118114952	chr16:28906290	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000177640.16	ENSG00000177548.13	.	.	downstream	downstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	chr12:105046145	chr12:105046190	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000151131.11	.	.	upstream	downstream	duplicates(10),merge_adjacent	.	.	.
AC104465.1(74427),AC092810.3(31600)	PAXBP1(172),C21orf62-AS1(136)	./.	./.	chr1:209075903	chr21:32771964	intergenic	intergenic	translocation	0	0	0	26	126	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	BX890604.1	+/.	-/.	chr2:32916556	chrX:3842903	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000285756.2	.	.	downstream	downstream	mismatches	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956917	chr17:75956926	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MYL10(431),CUX1(186177)	AC105180.2(10848),ZFAT(76453)	./.	./.	chr7:101629727	chr8:134401335	intergenic	intergenic	translocation	1	0	0	0	120	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(30),min_support,mismatches(1)	.	.	.
CD81	RBM19	+/+	-/+	chr11:2377523	chr12:113832543	5'UTR	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000110651.12	ENSG00000122965.11	.	.	downstream	upstream	mismatches(1)	.	.	.
PTPN2	PAXBP1(178),C21orf62-AS1(130)	-/.	./.	chr18:12870463	chr21:32771970	intron	intergenic	translocation	0	0	0	6	126	low	.	.	.	.	.	ENSG00000175354.20	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419192	chr14:106419121	exon	exon	duplication/ITD	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(7),low_entropy(1)	.	.	.
SPRY4-AS1	MIR3668(50092),AL035446.2(320370)	+/.	./.	chr5:142509136	chr6:140255418	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000231185.7	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	chr21:8216920	chr21:8444186	intron	intron	inversion/3'-3'	0	0	0	603	765	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000280441.3	.	.	upstream	upstream	mismatches(1)	.	.	.
GBP1P1	GBP1P1	+/.	+/.	chr1:89408654	chr1:89408667	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000225492.6	ENSG00000225492.6	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236813	chr15:33236828	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785688	chr2:101785787	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
CACNA1A	CACNA1A	-/.	-/.	chr19:13320233	chr19:13320273	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000141837.22	ENSG00000141837.22	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683456	chr15:81683469	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RIPK4	RIPK4	-/.	-/.	chr21:41758042	chr21:41758055	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000183421.12	ENSG00000183421.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01198(14967),LRCH1(22243)	UBE2FP2(4909),AC138305.1(128284)	./.	./.	chr13:46530925	chr16:63185980	intergenic	intergenic	translocation	0	0	0	83	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy	.	.	.
NEB(16233),ARL5A(38264)	NEB(16248),ARL5A(38249)	./.	./.	chr2:151750720	chr2:151750735	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
RBMS3	RBMS3	+/.	+/.	chr3:29884418	chr3:29884437	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000144642.22	ENSG00000144642.22	.	.	upstream	downstream	low_entropy(2)	.	.	.
RN7SL824P(52804),GFI1(17554)	CDK12	./.	+/.	chr1:92455489	chr17:39532100	intergenic	3'UTR	translocation	0	0	0	16	1	low	.	.	.	.	.	.	ENSG00000167258.15	.	.	upstream	upstream	mismatches(1)	.	.	.
GSG1L	GSG1L	-/.	-/.	chr16:27911257	chr16:27911274	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000169181.13	ENSG00000169181.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308653	chr3:19308666	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51921),RBMY2WP(38071)	./.	./.	chrY:22724736	chrY:22724780	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	FP236383.3	./.	+/.	chr3:95431525	chr21:8441654	intergenic	intron	translocation	0	0	0	5	76	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
TYRO3(16298),AC016134.1(9570)	TYRO3(16361),AC016134.1(9507)	./.	./.	chr15:41599887	chr15:41599950	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MTR	AXIN2	+/+	-/+	chr1:236893463	chr17:65557693	exon	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	B12_binding_domain(100%),Homocysteine_S-methyltransferase(100%),Pterin_binding_enzyme(100%),Vitamin_B12_dependent_methionine_synthase__activation_domain(36%)|	.	.	ENSG00000116984.15	ENSG00000168646.13	.	.	downstream	upstream	mismatches(1)	.	.	.
FECHP1(162381),KRT8P18(179470)	FECHP1(162416),KRT8P18(179435)	./.	./.	chr3:35036235	chr3:35036270	intergenic	intergenic	duplication/ITD	0	0	0	237	237	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC105252.1(292284),AC079380.1(3754)	FBP1	./.	-/.	chr4:133867492	chr9:94623529	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165140.11	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006196.1(62151),LINC01790(4270)	AC006196.1(62160),LINC01790(4261)	./.	./.	chr2:194726325	chr2:194726334	intergenic	intergenic	duplication/ITD	0	0	0	3	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FXNP1(22758),NRXN3(87337)	AC011474.1	./.	-/.	chr14:78083036	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
BANK1	BANK1	+/.	+/.	chr4:101439637	chr4:101439682	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000153064.12	ENSG00000153064.12	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AL441989.1(25383),MIR147A(245274)	NTM	./.	+/.	chr9:119999705	chr11:131741209	intergenic	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	.	ENSG00000182667.14	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092681.1	AC092681.1	-/.	-/.	chr7:149907473	chr7:149907510	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000224016.2	ENSG00000224016.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC009720.1(17440),PICART1(16065)	AC009720.1(17451),PICART1(16054)	./.	./.	chr17:50034284	chr17:50034295	intergenic	intergenic	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CEP162(5483),LINC01611(187902)	NTM	./.	+/.	chr6:84233126	chr11:131741209	intergenic	intron	translocation	0	0	0	2	6	low	.	.	.	.	.	.	ENSG00000182667.14	.	.	downstream	downstream	mismatches(1)	.	.	.
CTNNA2	CTNNA2	+/.	+/.	chr2:79384373	chr2:79384432	intron	intron	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	ENSG00000066032.19	ENSG00000066032.19	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CD47	DIO2-AS1	-/.	+/.	chr3:108049094	chr14:80410534	intron	intron	translocation/5'-5'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000196776.17	ENSG00000258766.1	.	.	upstream	downstream	mismatches(1)	.	.	.
CD47	AL441989.1(25379),MIR147A(245278)	-/.	./.	chr3:108049094	chr9:119999701	intron	intergenic	translocation	0	0	0	22	1	low	.	.	.	.	.	ENSG00000196776.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZCCHC14	.	-/.	./.	chr16:87420184	GL000214.1:28883	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140948.13	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	KI270733.1:137209	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL160004.2(1524),ACTA1(4071)	METTL15	./.	+/.	chr1:229427174	chr11:28310965	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000169519.21	.	.	downstream	downstream	mismatches(1)	.	.	.
AL034405.1	AL034405.1	-/.	-/.	chrX:129952791	chrX:129952849	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000235189.2	ENSG00000235189.2	.	.	upstream	downstream	low_entropy(2)	.	.	.
CD47	RPL9P15(86805),AC073359.2(63092)	-/.	./.	chr3:108049094	chr3:154763924	intron	intergenic	duplication	0	0	0	22	3	low	.	.	.	.	.	ENSG00000196776.17	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ACTR2(30873),SPRED2(8725)	CD47	./.	-/.	chr2:65302126	chr3:108049094	intergenic	intron	translocation	0	0	0	1	22	low	.	.	.	.	.	.	ENSG00000196776.17	.	.	upstream	upstream	mismatches(1)	.	.	.
SGMS1	FP671120.4	-/.	+/.	chr10:50624032	chr21:8214786	intron	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000198964.14	ENSG00000278996.1	.	.	upstream	upstream	mismatches	.	.	.
MAOB	MAOB	-/.	-/.	chrX:43857118	chrX:43857131	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000069535.14	ENSG00000069535.14	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ERBB3	CHD3	+/.	+/.	chr12:56097170	chr17:7885002	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065361.16	ENSG00000170004.17	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916570	chr21:8397818	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
RNU6-521P(183178),AC007274.3(50632)	RNU6-521P(183191),AC007274.3(50619)	./.	./.	chrY:7606336	chrY:7606349	intergenic	intergenic	duplication/ITD	0	0	0	1172	1166	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916571	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
WBP1LP12(23798)	RILPL1	./.	-/.	chr6:71326	chr12:123532314	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188026.13	.	.	downstream	upstream	mismatches(1)	.	.	.
GTPBP3(6422),PLVAP(2297)	GTPBP3(6496),PLVAP(2223)	./.	./.	chr19:17349153	chr19:17349227	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TTC21B	NPY4R(80912),GPRIN2(2174)	-/-	./-	chr2:165923783	chr10:46546870	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000123607.16	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TTC21B	AC024901.1	-/-	+/-	chr2:165923783	chr12:19932685	exon	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000123607.16	ENSG00000255910.2	.	.	upstream	downstream	mismatches(1)	.	.	.
BBS9	SVIL(151863),AL353093.1(2210)	+/.	./.	chr7:33585948	chr10:29888822	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000122507.21	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC4A7	PRMT9	-/.	-/.	chr3:27484029	chr4:147649187	intron	intron	translocation/3'-3'	0	0	0	6	1	low	.	.	.	.	.	ENSG00000033867.16	ENSG00000164169.13	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143102	chr11:82143111	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	DOCK1	+/.	+/.	chr2:32916408	chr10:127190668	intron	intron	translocation	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000150760.13	.	.	downstream	upstream	mismatches	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143106	chr11:82143115	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
GALNT17	CFAP58	+/.	+/.	chr7:71231771	chr10:104396370	intron	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	ENSG00000185274.12	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
KDM6B	5_8S_rRNA(2094),FP236383.3(121616)	+/.	./.	chr17:7852758	chr21:8259027	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000132510.11	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC018467.1(122842),AC012506.1(8766)	MMP2-AS1	./.	-/.	chr2:23321898	chr16:55433378	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000260135.7	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143105	chr11:82143114	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AL157778.1	AL157778.1	+/.	+/.	chrX:98484517	chrX:98484573	intron	intron	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	ENSG00000281566.3	ENSG00000281566.3	.	.	upstream	downstream	duplicates(4),low_entropy(4),merge_adjacent	.	.	.
AC142384.1	AC142384.1	+/.	+/.	chr16:33589394	chr16:33589405	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000259882.2	ENSG00000259882.2	.	.	upstream	downstream	duplicates(10),low_entropy(6)	.	.	.
PCYT1B	AL033530.1(17845),AL691520.1(12713)	-/-	./-	chrX:24647264	chr1:68961297	5'UTR	intergenic	translocation	0	0	0	8	3	low	.	.	.	.	.	ENSG00000102230.14	.	.	.	upstream	downstream	mismatches	.	.	.
RNU7-66P(128430),AL591004.1(353074)	FP671120.4	./.	+/.	chr6:66857334	chr21:8214792	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01524	LINC01524	+/.	+/.	chr20:52204566	chr20:52204583	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000234948.2	ENSG00000234948.2	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
FP236383.3	LINC01278	+/.	-/.	chr21:8441947	chrX:63433600	intron	intron	translocation	0	0	0	47	7	low	.	.	.	.	.	ENSG00000280441.3	ENSG00000235437.8	.	.	upstream	upstream	mismatches	.	.	.
PCYT1B	DYSF	-/-	+/+	chrX:24647264	chr2:71613588	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	|C2_domain(22%),Ferlin_C-terminus(100%)	.	.	ENSG00000102230.14	ENSG00000135636.14	.	.	upstream	upstream	mismatches	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396371	chr10:104396384	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RBBP6	FP671120.4	+/.	+/.	chr16:24540401	chr21:8209536	5'UTR	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000122257.20	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
AL033530.1(17845),AL691520.1(12713)	IFITM3P8(2518),AC022182.1(1083)	./.	./.	chr1:68961297	chr8:60908970	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
HNF4G	HNF4G	+/.	+/.	chr8:75430475	chr8:75430490	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000164749.13	ENSG00000164749.13	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
DYSF	IFITM3P8(2518),AC022182.1(1083)	+/.	./.	chr2:71613588	chr8:60908970	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135636.14	.	.	.	upstream	upstream	mismatches	.	.	.
C11orf58	C11orf58	+/.	+/.	chr11:16721498	chr11:16721513	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000110696.10	ENSG00000110696.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
DYSF	BOP1	+/.	-/.	chr2:71613588	chr8:144266400	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135636.14	ENSG00000261236.8	.	.	upstream	downstream	mismatches	.	.	.
SWAP70	SWAP70	+/.	+/.	chr11:9675314	chr11:9675413	intron	intron	duplication/ITD	0	0	0	1	41	low	.	.	.	.	.	ENSG00000133789.15	ENSG00000133789.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FGFR1(15353),C8orf86(26647)	LMO2(57901),AC090469.1(99990)	./.	./.	chr8:38484187	chr11:33949977	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZMYM1	FGFR1(15353),C8orf86(26647)	+/.	./.	chr1:35103260	chr8:38484187	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000197056.11	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	chr11:3702326	chr11:3702335	intron	intron	duplication/ITD	0	0	0	437	411	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000110713.17	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FGFR1(15353),C8orf86(26647)	AL133465.1(108877),LINC00237(4137)	./.	./.	chr8:38484187	chr20:21081439	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL929288.2(18712),RPS3AP9(3849)	AP002371.1(8126),AP003072.4(53698)	./.	./.	chr1:188690471	chr11:93080157	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CREB3L2	PAXBP1(180),C21orf62-AS1(128)	-/.	./.	chr7:137972737	chr21:32771972	intron	intergenic	translocation	0	0	0	1	126	low	.	.	.	.	.	ENSG00000182158.15	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FGFR1(15353),C8orf86(26647)	MIR99AHG	./.	+/.	chr8:38484187	chr21:16333755	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000215386.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565292	chr15:81565307	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
POM121	POM121	+/.	+/.	chr7:72894600	chr7:72894682	intron	intron	duplication/ITD	0	0	0	0	19	low	.	.	.	.	.	ENSG00000196313.11	ENSG00000196313.11	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:131115	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864068	chr9:106864077	intron	intron	duplication/ITD	0	0	0	87	86	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	duplicates(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31138635	chrX:31138644	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC002463.1	.	+/.	./.	chr7:112751479	GL000220.1:160777	intron	intergenic	translocation	0	0	0	22	.	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PDE1C	.	-/.	./.	chr7:32298025	KI270733.1:148270	intron	intergenic	translocation	0	0	0	72	.	low	.	.	.	.	.	ENSG00000154678.18	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158231	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
MCTP1(74946),FAM81B(31845)	MCTP1(74996),FAM81B(31795)	./.	./.	chr5:95359521	chr5:95359571	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117376	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
LY6E(14617),C8orf31(760)	AP005436.1	./.	-/.	chr8:143038449	chr11:88092437	intergenic	intron	translocation	0	0	0	171	838	low	.	.	.	.	.	.	ENSG00000255102.1	.	.	upstream	downstream	mismatches	.	.	.
TCF7L2	AC011474.1	+/.	-/.	chr10:113117380	chr19:29447568	intron	intron	translocation/3'-3'	0	0	0	266	53	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000264515.6	.	.	upstream	downstream	mismatches	.	.	.
FXNP1(22752),NRXN3(87343)	AC011474.1	./.	-/.	chr14:78083030	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
FXNP1(22754),NRXN3(87341)	AC011474.1	./.	-/.	chr14:78083032	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
C2orf83	C2orf83	-/.	-/.	chr2:227643250	chr2:227643291	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000042304.13	ENSG00000042304.13	.	.	upstream	downstream	duplicates(14),low_entropy(4)	.	.	.
FXNP1(22756),NRXN3(87339)	AC011474.1	./.	-/.	chr14:78083034	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
DDB2	FP236383.3	+/.	+/.	chr11:47233105	chr21:8395070	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
IGH@-ext	AC011474.1	-/.	-/.	chr14:106419209	chr19:29447568	exon	intron	translocation/3'-3'	0	0	0	86	53	low	.	.	.	.	.	IGH.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FOSB	+/.	+/.	chr2:32916556	chr19:45468660	intron	CDS	translocation	0	0	0	1606	38	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000125740.14	.	.	downstream	upstream	low_entropy	.	.	.
CTNND2	.	-/.	./.	chr5:11816754	GL000220.1:160360	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
IQCH	SRPX	+/.	-/.	chr15:67307531	chrX:38180137	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000103599.20	ENSG00000101955.15	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01791	TSHZ3	+/.	-/.	chr19:31183173	chr19:31183242	intron	intron	duplication/3'-3'	0	0	0	64	10	low	.	.	.	.	.	ENSG00000267777.2	ENSG00000121297.8	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
NR5A1	FP236383.3	-/-	+/-	chr9:124507410	chr21:8397709	5'UTR	intron	translocation/5'-5'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
RPSAP2(46118),NOP56P1(4611)	FRMPD4	./.	+/.	chr6:28779022	chrX:12253702	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000169933.16	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22760),NRXN3(87335)	AC011474.1	./.	-/.	chr14:78083038	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
CDH13	CDH13	+/.	+/.	chr16:83134541	chr16:83134597	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000140945.17	ENSG00000140945.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FXNP1(22762),NRXN3(87333)	AC011474.1	./.	-/.	chr14:78083040	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
FXNP1(22766),NRXN3(87329)	AC011474.1	./.	-/.	chr14:78083044	chr19:29447568	intergenic	intron	translocation	0	0	0	640	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
PEX14	COL15A1	+/.	+/.	chr1:10540531	chr9:98992305	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000142655.13	ENSG00000204291.11	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22768),NRXN3(87327)	AC011474.1	./.	-/.	chr14:78083046	chr19:29447568	intergenic	intron	translocation	0	0	0	640	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479815	intergenic	intron	translocation	0	0	0	0	984	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	CLPTM1L	+/.	-/.	chr2:32916556	chr5:1344655	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000049656.14	.	.	downstream	upstream	mismatches	.	.	.
OSBP2	OSBP2	+/.	+/.	chr22:30730717	chr22:30730726	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000184792.16	ENSG00000184792.16	.	.	upstream	downstream	low_entropy(2)	.	.	.
C2orf83	C2orf83	-/.	-/.	chr2:227643250	chr2:227643292	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000042304.13	ENSG00000042304.13	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078777	chr1:225078870	intron	intron	duplication/ITD	0	0	0	19	28	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	small_insert_size	.	.	.
FXNP1(22772),NRXN3(87323)	AC011474.1	./.	-/.	chr14:78083050	chr19:29447568	intergenic	intron	translocation	0	0	0	640	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298014	chr7:32298023	intron	intron	duplication/ITD	0	0	0	72	72	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DNAH14	DNAH14	+/.	+/.	chr1:225078773	chr1:225078870	intron	intron	duplication/ITD	0	0	0	19	28	low	.	.	.	.	.	ENSG00000185842.15	ENSG00000185842.15	.	.	upstream	downstream	same_gene	.	.	.
FXNP1(22776),NRXN3(87319)	AC011474.1	./.	-/.	chr14:78083054	chr19:29447568	intergenic	intron	translocation	0	0	0	640	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
SH3RF3(34540),SEPTIN10(3625)	SUPT5H	./.	+/.	chr2:109539174	chr19:39458235	intergenic	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000196235.14	.	.	downstream	upstream	mismatches(2)	.	.	.
PIGS	ZNF780A	-/.	-/.	chr17:28571019	chr19:40090463	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087111.21	ENSG00000197782.14	.	.	downstream	upstream	mismatches(1)	.	.	.
PAXBP1(72),C21orf62-AS1(236)	PAXBP1(81),C21orf62-AS1(227)	./.	./.	chr21:32771864	chr21:32771873	intergenic	intergenic	duplication/ITD	0	0	0	760	276	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262482	chr6:42262491	intron	intron	duplication/ITD	0	0	0	3756	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
FXNP1(22746),NRXN3(87349)	AC011474.1	./.	-/.	chr14:78083024	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:114253	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
TET2	TET2	+/.	+/.	chr4:105163807	chr4:105163855	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000168769.14	ENSG00000168769.14	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TCF15(3584),SRXN1(32633)	.	./.	./.	chr20:613982	GL000220.1:114264	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
IGH@-ext	AC011474.1	-/.	-/.	chr14:106419215	chr19:29447568	exon	intron	translocation/3'-3'	0	0	0	86	53	low	.	.	.	.	.	IGH.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
IGH@-ext	AC011474.1	-/.	-/.	chr14:106419213	chr19:29447568	exon	intron	translocation/3'-3'	0	0	0	86	53	low	.	.	.	.	.	IGH.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
IGH-@-ext	AC011474.1	+/+	-/-	chr14:106419213	chr19:29447568	exon	intron	translocation	0	0	0	86	53	low	.	.	.	.	.	IGH-.g@-ext	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
SFN(3791),GPN2(7885)	SFN(3847),GPN2(7829)	./.	./.	chr1:26868247	chr1:26868303	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3)	.	.	.
GALNT2	FP236383.3	+/.	+/.	chr1:230175600	chr21:8392571	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000143641.10	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143107	chr11:82143116	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
PLPP4	PLPP4	+/.	+/.	chr10:120574169	chr10:120574180	intron	intron	duplication/ITD	0	0	0	65	0	low	.	.	.	.	.	ENSG00000203805.11	ENSG00000203805.11	.	.	upstream	downstream	duplicates(10),low_entropy(1),merge_adjacent	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396380	chr10:104396389	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469921	chr7:26469930	intron	intron	duplication/ITD	0	0	0	48	42	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ABCC4	ABCC4	-/.	-/.	chr13:95029206	chr13:95029265	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000125257.16	ENSG00000125257.16	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	CCDC146	+/.	+/.	chr2:32916556	chr7:77259176	intron	exon	translocation	0	0	0	1606	171	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000135205.15	.	.	downstream	upstream	low_entropy	.	.	.
TCF15(3584),SRXN1(32633)	.	./.	./.	chr20:613982	KI270733.1:176199	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
CTNND2	FP236383.3	-/.	+/.	chr5:11816754	chr21:8399951	intron	intron	translocation/3'-3'	0	0	0	5	729	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	LINC01278	+/.	-/.	chr21:8214689	chrX:63433600	intron	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	ENSG00000278996.1	ENSG00000235437.8	.	.	upstream	upstream	mismatches	.	.	.
AL356010.2	AP003390.1(4502),AP001994.1(77179)	+/.	./.	chr1:238389816	chr11:119744125	intron	intergenic	translocation	0	0	0	0	1348	low	.	.	.	.	.	ENSG00000234464.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	chr19:30664247	chr19:30664284	intron	intron	duplication/ITD	0	0	0	30	30	low	.	.	.	.	.	ENSG00000198597.9	ENSG00000198597.9	.	.	upstream	downstream	duplicates(25),low_entropy(1)	.	.	.
SLC39A8	SLC39A8	-/.	-/.	chr4:102350135	chr4:102350195	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000138821.13	ENSG00000138821.13	.	.	upstream	downstream	low_entropy(1)	.	.	.
PRIMA1	.	-/.	./.	chr14:93720763	GL000220.1:114265	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000175785.13	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
FGFR2	SYNE2	-/.	+/.	chr10:121572779	chr14:63853711	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000066468.23	ENSG00000054654.19	.	.	downstream	upstream	mismatches(1)	.	.	.
PRIMA1	.	-/.	./.	chr14:93720763	GL000220.1:158237	3'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000175785.13	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
ACTG1P23(47423),EI24P1(42049)	ACTG1P23(47483),EI24P1(41989)	./.	./.	chr3:176025993	chr3:176026053	intergenic	intergenic	duplication/ITD	0	0	0	56	56	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
TCF15(3584),SRXN1(32633)	.	./.	./.	chr20:613982	GL000220.1:158236	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
RGS12	AC124861.2(17620),AC124861.1(15532)	+/+	./-	chr4:3386018	chr2:240212028	exon	intergenic	translocation	0	0	0	0	7	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683458	chr15:81683469	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2)	.	.	.
IDUA	AC025470.2	+/.	+/.	chr4:993641	chr5:57533337	intron	exon	translocation	0	0	0	14	6	low	.	.	.	.	.	ENSG00000127415.13	ENSG00000250961.2	.	.	downstream	upstream	duplicates(2)	.	.	.
EMCN	AC097459.1	-/.	+/.	chr4:100459176	chr4:100459185	intron	intron	duplication/5'-5'	0	0	0	13	13	low	.	.	.	.	.	ENSG00000164035.10	ENSG00000286150.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TCF15(3584),SRXN1(32633)	FP236383.3	./.	+/.	chr20:613982	chr21:8397832	intergenic	intron	translocation	0	0	0	0	450	low	.	.	.	.	.	.	ENSG00000280441.3	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL161658.1(2264),INSM1(183)	.	./.	./.	chr20:20367921	GL000220.1:136319	intergenic	intergenic	translocation	0	0	0	28	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
RGS12	IDUA	+/+	+/-	chr4:3386020	chr4:993641	exon	intron	inversion/3'-3'	0	0	0	0	14	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	ENSG00000127415.13	.	.	downstream	downstream	duplicates(2)	.	.	.
UTRN	.	+/.	./.	chr6:144823828	GL000220.1:157834	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152818.18	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LIPG(20228),SMUG1P1(30937)	PRSS57(12682),PALM(755)	./.	./.	chr18:49619413	chr19:708180	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RN7SL824P(52804),GFI1(17554)	AL358053.1(206677),AL591644.1(221004)	./.	./.	chr1:92455489	chr9:1756780	intergenic	intergenic	translocation	0	0	0	16	40	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FOXK1	CDK12	+/.	+/.	chr7:4705559	chr17:39532089	intron	3'UTR	translocation	0	0	0	5	1	low	.	.	.	.	.	ENSG00000164916.11	ENSG00000167258.15	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SL824P(52808),GFI1(17550)	RN7SL824P(52863),GFI1(17495)	./.	./.	chr1:92455493	chr1:92455548	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00498	LINC00498	-/.	-/.	chr4:138299706	chr4:138299766	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000248397.1	ENSG00000248397.1	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32298003	chr7:32298012	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CACNB2	CACNB2	+/.	+/.	chr10:18220233	chr10:18220246	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000165995.22	ENSG00000165995.22	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RN7SL824P(52808),GFI1(17550)	RN7SL824P(52817),GFI1(17541)	./.	./.	chr1:92455493	chr1:92455502	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
TMEM87B(12691),FBLN7(6376)	AL358053.1(206658),AL591644.1(221023)	./.	./.	chr2:112132009	chr9:1756761	intergenic	intergenic	translocation	0	0	0	8	40	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358053.1(206658),AL591644.1(221023)	AL358053.1(206667),AL591644.1(221014)	./.	./.	chr9:1756761	chr9:1756770	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL358053.1(206666),AL591644.1(221015)	AL358053.1(206675),AL591644.1(221006)	./.	./.	chr9:1756769	chr9:1756778	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	chr15:45462136	chr15:45462234	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000259354.5	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AL358053.1(206654),AL591644.1(221027)	AL358053.1(206663),AL591644.1(221018)	./.	./.	chr9:1756757	chr9:1756766	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
KBTBD8(24732),MIR4272(189522)	AL358053.1(206653),AL591644.1(221028)	./.	./.	chr3:67035942	chr9:1756756	intergenic	intergenic	translocation	0	0	0	0	40	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC114485.1(331898),AC099567.1(41794)	AC114485.1(331955),AC099567.1(41737)	./.	./.	chr1:102721528	chr1:102721585	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(10)	.	.	.
AL358053.1(206650),AL591644.1(221031)	ACACB	./.	+/.	chr9:1756753	chr12:109133266	intergenic	intron	translocation	0	0	0	40	0	low	.	.	.	.	.	.	ENSG00000076555.15	.	.	upstream	downstream	mismatches(1)	.	.	.
MSH2	PPP6C	+/.	-/.	chr2:47491554	chr9:125167825	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000095002.15	ENSG00000119414.12	.	.	upstream	upstream	mismatches	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16350),AC016134.1(9518)	./.	./.	chr15:41599880	chr15:41599939	intergenic	intergenic	duplication/ITD	0	0	0	187	187	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC00326(25969),MTCYBP4(17189)	AL354855.1(21524),SNORD62A(91627)	./.	./.	chr6:133133379	chr9:131394038	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392821	chr1:90392830	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TEAD4	AC092198.1(1834),BCOR(35799)	+/.	./.	chr12:2981316	chrX:40014016	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197905.10	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	chr7:139729319	chr7:139729373	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000064393.16	ENSG00000064393.16	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
LINC00486	INSYN2A	+/.	-/.	chr2:32916382	chr10:127190668	intron	intron	translocation/5'-5'	0	0	0	275	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188916.9	.	.	downstream	upstream	mismatches	.	.	.
AC092017.3	LINC01432(143327),AL035258.1(2573)	-/.	./.	chr1:211148119	chr20:22217981	intron	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000284376.1	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP77	FUT8	+/.	+/.	chr9:132457328	chr14:65662720	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000188523.9	ENSG00000033170.17	.	.	downstream	upstream	mismatches(1)	.	.	.
TPTE2P1	AC092198.1(1834),BCOR(35799)	-/.	./.	chr13:24931821	chrX:40014016	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000253771.6	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRAPPC9	AC090282.1(7729),OR1A2(12759)	-/.	./.	chr8:140089241	chr17:3184760	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000167632.18	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SNORD65B(4665),AC016868.1(3906)	TEAD4	./.	+/.	chr8:41431392	chr12:2981316	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000197905.10	.	.	upstream	downstream	mismatches(1)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	chr15:33236817	chr15:33236826	exon	exon	duplication/ITD	0	0	0	88	84	low	.	.	.	.	.	ENSG00000215296.10	ENSG00000215296.10	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
TRERF1	MID1IP1(102282),RNU6-591P(172361)	-/.	./.	chr6:42262588	chrX:38908819	intron	intergenic	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661621	chrX:133661634	intron	intron	duplication/ITD	0	0	0	0	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	NUDT19P6(4837),PGRMC1(8163)	-/.	./.	chr6:42262599	chrX:119228082	intron	intergenic	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143101	chr11:82143110	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
TRERF1	MID1IP1(102282),RNU6-591P(172361)	-/.	./.	chr6:42262592	chrX:38908819	intron	intergenic	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SFN(3793),GPN2(7883)	SFN(3852),GPN2(7824)	./.	./.	chr1:26868249	chr1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262493	chr6:42262592	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262495	chr6:42262594	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF462	MRE11	+/.	-/.	chr9:106864110	chr11:94419495	intron	3'UTR	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000020922.13	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	MID1IP1(102282),RNU6-591P(172361)	-/.	./.	chr6:42262596	chrX:38908819	intron	intergenic	translocation	0	0	0	2501	0	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC016026.1	.	-/.	./.	chr22:17796203	GL000220.1:114258	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000093100.13	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262497	chr6:42262596	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
EXOC3	LINC00486	+/+	+/-	chr5:443254	chr2:32916565	5'UTR	intron	translocation/5'-5'	0	0	0	3	1588	low	.	.	.	.	.	ENSG00000180104.16	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
LINC01194(30567),LINC02220(79138)	LINC01194(30576),LINC02220(79129)	./.	./.	chr5:12834930	chr5:12834939	intergenic	intergenic	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565285	chr15:81565343	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SHISA5(10328),PFKFB4(2530)	LINC02401	./.	+/.	chr3:48515154	chr12:103552528	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000257762.6	.	.	upstream	upstream	mismatches(1)	.	.	.
LUC7L3	.	+/.	./.	chr17:50719769	KI270733.1:173089	CDS	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000108848.16	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262583	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
CHD3	RTEL1	+/.	+/.	chr17:7885002	chr20:63683596	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170004.17	ENSG00000258366.9	.	.	upstream	downstream	mismatches(1)	.	.	.
CHTF18	SRXN1(60),SCRT2(8336)	+/.	./.	chr16:795868	chr20:653260	intron	intergenic	translocation	0	0	0	4	3	low	.	.	.	.	.	ENSG00000127586.17	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL627095.1(5388),ZNF669(8507)	AL627095.1(5453),ZNF669(8442)	./.	./.	chr1:247091455	chr1:247091520	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	BNC2	+/.	-/.	chr2:32916556	chr9:16539667	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000173068.18	.	.	downstream	downstream	mismatches	.	.	.
EDEM3(23136),NIBAN1(12681)	LINC01396(6259),MSX1(2579)	./.	./.	chr1:184778043	chr4:4857086	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CTNND2	.	-/.	./.	chr5:11817285	GL000220.1:116388	intron	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	ENSG00000169862.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TMC4	SRXN1(60),SCRT2(8336)	-/-	./+	chr19:54168416	chr20:653260	exon	intergenic	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000167608.12	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392798	chr1:90392889	intron	intron	duplication/ITD	0	0	0	326	334	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	same_gene	.	.	.
SIM1	SIM1	-/.	-/.	chr6:100457988	chr6:100458064	intron	intron	duplication/ITD	0	0	0	69	69	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000112246.10	.	.	upstream	downstream	duplicates(4),low_entropy(10)	.	.	.
TTLL7(35),AC104454.1(16680)	.	./.	./.	chr1:83999185	GL000220.1:158224	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
CFAP58	CFAP58	+/.	+/.	chr10:104396382	chr10:104396391	intron	intron	duplication/ITD	0	0	0	217	175	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000120051.15	.	.	upstream	downstream	duplicates(21),low_entropy(23)	.	.	.
FAF1	CYP2A7	-/.	-/.	chr1:50527836	chr19:40880795	intron	intron	translocation/5'-5'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000185104.20	ENSG00000198077.11	.	.	upstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	chr12:105046145	chr12:105046189	intron	intron	duplication/3'-3'	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000151131.11	ENSG00000136010.14	.	.	upstream	downstream	duplicates(13)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312078	chr11:22312095	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
C9orf64(1982),HNRNPK(9115)	AP001599.1	./.	+/.	chr9:83958968	chr21:26914104	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000223563.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312077	chr11:22312096	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC104009.1	AC104009.1	-/.	-/.	chr11:22312081	chr11:22312096	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000254768.6	ENSG00000254768.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HAUS4(2346),AJUBA(11670)	NRG4(66),TMEM266(97)	./.	./.	chr14:22959507	chr15:76059861	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MCFD2	AL121790.1(4100),FOXA1(6327)	-/.	./.	chr2:46941038	chr14:37583225	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000180398.13	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL020994.1	AL020994.1	-/.	-/.	chr22:27316602	chr22:27316611	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000223726.1	ENSG00000223726.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TTC7A	AL121790.1(4100),FOXA1(6327)	+/.	./.	chr2:46941038	chr14:37583225	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000068724.17	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02554	AL020994.1	+/.	-/.	chr22:27316602	chr22:27316611	intron	intron	duplication/3'-3'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000226741.2	ENSG00000223726.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:32054089	chrX:32054102	intron	intron	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(7),low_entropy(9)	.	.	.
AC104042.1(863601),AC061997.1(140657)	AC104042.1(863642),AC061997.1(140616)	./.	./.	chr11:37561468	chr11:37561509	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC023034.1	USP9YP6	+/.	-/.	chr15:81565298	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092445	chr21:8447433	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
PHF6(23316),HPRT1(8058)	PHF6(23370),HPRT1(8004)	./.	./.	chrX:134452107	chrX:134452161	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
RN7SL680P(78631),AL132981.1(227302)	RN7SL680P(78642),AL132981.1(227291)	./.	./.	chr20:39428023	chr20:39428034	intergenic	intergenic	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GDA	KCNC3	+/.	-/.	chr9:72149990	chr19:50315298	intron	3'UTR	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000119125.17	ENSG00000131398.15	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02552	FP671120.4	-/.	+/.	chr11:104549832	chr21:8214827	intron	intron	translocation	0	0	0	16	6	low	.	.	.	.	.	ENSG00000256422.6	ENSG00000278996.1	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	AL355838.1(184613),Metazoa_SRP(214910)	-/.	./.	chr10:104479903	chr14:82214962	intron	intergenic	translocation	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TAOK1	AL160408.4	+/+	+/+	chr17:29390580	chr1:234665154	5'UTR	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000160551.12	ENSG00000241475.1	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02552	5_8S_rRNA(2123),FP236383.3(121587)	-/.	./.	chr11:104549832	chr21:8259056	intron	intergenic	translocation	0	0	0	16	23	low	.	.	.	.	.	ENSG00000256422.6	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683456	chr15:81683469	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PCAT1	AC244102.3	+/.	-/.	chr8:126750632	chrX:152576445	intron	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	ENSG00000253438.4	ENSG00000287394.1	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	MORC4	-/.	-/.	chr6:42262492	chrX:106941412	intron	3'UTR	translocation	0	0	0	3756	0	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000133131.15	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02552	.	-/.	./.	chr11:104549832	KI270733.1:131149	intron	intergenic	translocation	0	0	0	16	.	low	.	.	.	.	.	ENSG00000256422.6	.	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
RPL9P15(86760),AC073359.2(63137)	RPL9P15(86815),AC073359.2(63082)	./.	./.	chr3:154763879	chr3:154763934	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CEP162(5448),LINC01611(187937)	CEP162(5489),LINC01611(187896)	./.	./.	chr6:84233091	chr6:84233132	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CEBPE	LINC00486	-/-	+/-	chr14:23117710	chr2:32916565	CDS	intron	translocation/5'-5'	0	0	0	43	1588	low	.	.	Basic_region_leucine_zipper(8%)|	.	.	ENSG00000092067.6	ENSG00000230876.8	.	.	upstream	downstream	low_entropy	.	.	.
STK32C	LRRC4B	-/.	-/.	chr10:132223311	chr19:50548287	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000165752.17	ENSG00000131409.13	.	.	upstream	downstream	mismatches(1)	.	.	.
AL441989.1(25334),MIR147A(245323)	AL441989.1(25389),MIR147A(245268)	./.	./.	chr9:119999656	chr9:119999711	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TAB2(11973),ZC3H12D(23209)	TAB2(11986),ZC3H12D(23196)	./.	./.	chr6:149423586	chr6:149423599	intergenic	intergenic	duplication/ITD	0	0	0	295	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
KDM4B	FP671120.4	+/.	+/.	chr19:5086526	chr21:8217320	intron	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000127663.15	ENSG00000278996.1	.	.	downstream	upstream	mismatches(1)	.	.	.
HDAC7	AL050402.1(52852),AL133456.1(50927)	-/.	./.	chr12:47810805	chr22:27512912	intron	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000061273.18	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NR5A1	FP671120.4	-/-	+/-	chr9:124507409	chr21:8209536	5'UTR	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
RHBDF1(353),MPG(299)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	chr16:76708	chr21:8259021	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
IGF2	FP671120.4	-/.	+/.	chr11:2138067	chr21:8209536	intron	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000167244.21	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
NR5A1	.	-/-	./-	chr9:124507410	KI270733.1:176067	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
RGS12	.	+/+	./+	chr4:3386018	KI270733.1:176193	exon	intergenic	translocation	0	0	0	0	.	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788.19	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC132217.2	.	-/.	./.	chr11:2138068	KI270733.1:176067	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000284779.2	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
NR5A1	.	-/-	./-	chr9:124507409	KI270733.1:125836	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
IGF2	.	-/.	./.	chr11:2138067	KI270733.1:125836	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000167244.21	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916520	chr21:8214784	intron	intron	translocation	0	0	0	1644	2358	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	low_entropy	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22764),NRXN3(87331)	./.	./.	chr14:78082946	chr14:78083042	intergenic	intergenic	duplication/ITD	0	0	0	455	640	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HIPK2	HIPK2	-/.	-/.	chr7:139729319	chr7:139729381	intron	intron	duplication/ITD	0	0	0	31	30	low	.	.	.	.	.	ENSG00000064393.16	ENSG00000064393.16	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NR5A1	.	-/-	./-	chr9:124507410	GL000220.1:114132	5'UTR	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136931.10	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AC026341.1	PDZD8(43120),AC005871.2(6634)	+/.	./.	chr3:115151374	chr10:117418560	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000242880.2	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02789	MT-RNR1	+/.	+/.	chr1:199202043	chrM:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000231718.1	ENSG00000211459.2	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
AC132217.2	FP236383.3	-/.	+/.	chr11:2138068	chr21:8397709	intron	intron	translocation/5'-5'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000284779.2	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262494	chr6:42262593	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC132217.2	.	-/.	./.	chr11:2138068	GL000220.1:114132	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000284779.2	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AL353586.1	IGF2	+/.	-/.	chr10:12889013	chr11:2138071	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000285520.1	ENSG00000167244.21	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKCE	MIR3668(50092),AL035446.2(320370)	+/.	./.	chr2:45706402	chr6:140255418	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000171132.14	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308672	chr3:19308681	intron	intron	duplication/ITD	0	0	0	238	238	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
UVSSA	FP671120.4(5320),FP671120.10(2388)	+/.	./.	chr4:1346670	chr21:8232966	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL353586.1	IGF2	+/.	-/.	chr10:12889013	chr11:2138067	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000285520.1	ENSG00000167244.21	.	.	upstream	upstream	mismatches(1)	.	.	.
ZSWIM6	NAV2-AS4	+/.	-/.	chr5:61455815	chr11:19511706	intron	exon	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000130449.6	ENSG00000254622.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP3K7(430063),AL080284.1(373178)	MAP3K7(430120),AL080284.1(373121)	./.	./.	chr6:91017135	chr6:91017192	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
C11orf80	LINC00486	+/+	+/-	chr11:66744844	chr2:32916597	5'UTR	intron	translocation/5'-5'	0	0	0	3	46	low	.	.	.	.	.	ENSG00000173715.18	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
AL353586.1	AC132217.2	+/.	-/.	chr10:12889013	chr11:2138067	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000285520.1	ENSG00000284779.2	.	.	upstream	upstream	mismatches(1)	.	.	.
HAPLN1(16187),AC020899.1(9346)	HAPLN1(16200),AC020899.1(9333)	./.	./.	chr5:83737042	chr5:83737055	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC132217.2	FP671120.4	-/.	+/.	chr11:2138068	chr21:8214672	intron	intron	translocation/5'-5'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000284779.2	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262478	chr6:42262487	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
NR5A1	FP236383.3	-/-	+/-	chr9:124507409	chr21:8392571	5'UTR	intron	translocation/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000280441.3	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565344	intron	intron	duplication	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1)	.	.	.
TNR	SAPCD2P1(11260),ZNF735(12937)	-/.	./.	chr1:175517011	chr7:64194153	intron	intergenic	translocation	0	0	0	27	78	low	.	.	.	.	.	ENSG00000116147.17	.	.	.	upstream	upstream	low_entropy	.	.	.
SAPCD2P1(11260),ZNF735(12937)	PLPP4	./.	+/.	chr7:64194153	chr10:120574225	intergenic	intron	translocation	0	0	0	78	65	low	.	.	.	.	.	.	ENSG00000203805.11	.	.	upstream	downstream	low_entropy	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257411	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(3)	.	.	.
SAPCD2P1(11260),ZNF735(12937)	LINC02086	./.	+/.	chr7:64194153	chr17:48678019	intergenic	intron	translocation	0	0	0	78	4	low	.	.	.	.	.	.	ENSG00000244649.5	.	.	upstream	downstream	low_entropy	.	.	.
SAPCD2P1(11260),ZNF735(12937)	FREM1	./.	-/.	chr7:64194153	chr9:14774565	intergenic	intron	translocation	0	0	0	78	8	low	.	.	.	.	.	.	ENSG00000164946.20	.	.	upstream	downstream	low_entropy	.	.	.
SAPCD2P1(11260),ZNF735(12937)	LINC01505	./.	+/.	chr7:64194153	chr9:106616703	intergenic	intron	translocation	0	0	0	78	3	low	.	.	.	.	.	.	ENSG00000234323.8	.	.	upstream	upstream	low_entropy	.	.	.
SAPCD2P1(11260),ZNF735(12937)	DRD2(32263),TMPRSS5(179593)	./.	./.	chr7:64194153	chr11:113507954	intergenic	intergenic	translocation	0	0	0	78	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy	.	.	.
MAP4K4	MGC32805(95898),LINC02201(53967)	+/.	./.	chr2:101785796	chr5:122574985	intron	intergenic	translocation	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SAPCD2P1(11260),ZNF735(12937)	RPL35AP21(49993),CEMIP2(43440)	./.	./.	chr7:64194153	chr9:71639926	intergenic	intergenic	translocation	0	0	0	78	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy	.	.	.
AC008739.1(16617),ZNF430(20807)	AC008798.1(9216),AC008507.3(4777)	./.	./.	chr19:20999827	chr19:29911085	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079896.1(46913),LYARP1(215814)	SAPCD2P1(11260),ZNF735(12937)	./.	./.	chr2:82052613	chr7:64194153	intergenic	intergenic	translocation	0	0	0	3	78	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81565305	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(7),low_entropy(8)	.	.	.
PXYLP1	PXYLP1	+/.	+/.	chr3:141268163	chr3:141268207	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000155893.13	ENSG00000155893.13	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
SAPCD2P1(11260),ZNF735(12937)	BRINP1	./.	-/.	chr7:64194153	chr9:119219645	intergenic	intron	translocation	0	0	0	78	4	low	.	.	.	.	.	.	ENSG00000078725.13	.	.	upstream	upstream	low_entropy	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785674	chr2:101785773	intron	intron	duplication/ITD	0	0	0	703	764	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392807	chr1:90392816	intron	intron	duplication/ITD	0	0	0	334	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SAPCD2P1(11260),ZNF735(12937)	AC002072.1	./.	+/.	chr7:64194153	chrX:113133874	intergenic	intron	translocation	0	0	0	78	6	low	.	.	.	.	.	.	ENSG00000286072.1	.	.	upstream	downstream	low_entropy	.	.	.
NUP98	DAZAP2	-/.	+/.	chr11:3702367	chr12:51248435	intron	intron	translocation/3'-3'	0	0	0	437	16	low	.	.	.	.	.	ENSG00000110713.17	ENSG00000183283.16	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PCYT1B	LINC00486	-/-	+/-	chrX:24647265	chr2:32916556	5'UTR	intron	translocation/5'-5'	0	0	0	8	1606	low	.	.	.	.	.	ENSG00000102230.14	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
TMCO5B	POU6F2(12330),AC011290.1(40221)	-/-	./+	chr15:33236820	chr7:39505425	exon	intergenic	translocation	0	0	0	88	23	low	.	.	.	.	.	ENSG00000215296.10	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SMYD2	MIR4300HG	+/.	-/.	chr1:214292095	chr11:82143174	intron	intron	translocation/3'-3'	0	0	0	0	719	low	.	.	.	.	.	ENSG00000143499.14	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565302	chr15:81565311	intron	intron	duplication/ITD	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	duplicates(7),low_entropy(4)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81565302	chr15:81565311	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02565(107098),RNU6-737P(6310)	LINC02565(107113),RNU6-737P(6295)	./.	./.	chr18:57278292	chr18:57278307	intergenic	intergenic	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479904	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81565302	chr15:81565311	intron	intron	duplication	0	0	0	216	191	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736266	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
LSAMP	LSAMP	-/.	-/.	chr3:116642646	chr3:116642659	intron	intron	duplication/ITD	0	0	0	13	0	low	.	.	.	.	.	ENSG00000185565.12	ENSG00000185565.12	.	.	upstream	downstream	duplicates(5),low_entropy(8)	.	.	.
GARS1-DT	GARS1-DT	-/.	-/.	chr7:30520832	chr7:30520923	intron	intron	duplication/ITD	0	0	0	5	15	low	.	.	.	.	.	ENSG00000196295.12	ENSG00000196295.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396372	chr10:104479895	intron	intron	duplication/3'-3'	0	0	0	217	988	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
ACTG1P23(47423),EI24P1(42049)	ACTG1P23(47484),EI24P1(41988)	./.	./.	chr3:176025993	chr3:176026054	intergenic	intergenic	duplication/ITD	0	0	0	56	56	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8397818	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10913),AP000345.1(8354)	./.	./.	chr22:23558642	chr22:23558710	intergenic	intergenic	duplication/ITD	0	0	0	140	136	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGF2	FP671120.4	-/.	+/.	chr11:2138068	chr21:8214672	intron	intron	translocation/5'-5'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000167244.21	ENSG00000278996.1	.	.	upstream	downstream	mismatches(1)	.	.	.
LRPPRC	MIR4300HG	-/.	-/.	chr2:43924346	chr11:82143176	intron	intron	translocation	0	0	0	0	719	low	.	.	.	.	.	ENSG00000138095.19	ENSG00000245832.7	.	.	upstream	downstream	mismatches(2)	.	.	.
KCNH8	KCNH8	+/.	+/.	chr3:19308657	chr3:19308666	intron	intron	duplication/ITD	0	0	0	238	195	low	.	.	.	.	.	ENSG00000183960.9	ENSG00000183960.9	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
ZNF462	ZNF462	+/.	+/.	chr9:106864049	chr9:106864058	intron	intron	duplication/ITD	0	0	0	87	34	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000148143.13	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TCF15(3584),SRXN1(32633)	FP671120.4	./.	+/.	chr20:613982	chr21:8214798	intergenic	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	.	ENSG00000278996.1	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GEMIN8(106769),UBE2E4P(107720)	GEMIN8(106838),UBE2E4P(107651)	./.	./.	chrX:14136662	chrX:14136731	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446350	chr12:50446359	intron	intron	duplication/ITD	0	0	0	86	18	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021201	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGH@-ext	IGH-@-ext	-/-	+/-	chr14:106419120	chr14:106419213	exon	exon	duplication/5'-5'	0	0	0	71	86	low	.	.	.	.	.	IGH.g@-ext	IGH-.g@-ext	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC02358	LINC02358	+/.	+/.	chr4:54857146	chr4:54857175	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000251256.1	ENSG00000251256.1	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CASZ1	TIAM1	-/.	-/.	chr1:10795490	chr21:31469981	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000130940.15	ENSG00000156299.13	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC006458.1(129546),AGMO(2120)	AC006458.1(129600),AGMO(2066)	./.	./.	chr7:15198197	chr7:15198251	intergenic	intergenic	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00498	LINC00498	-/.	-/.	chr4:138299706	chr4:138299764	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000248397.1	ENSG00000248397.1	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AGMO	AL358053.1(206653),AL591644.1(221028)	-/.	./.	chr7:15449361	chr9:1756756	intron	intergenic	translocation	0	0	0	1	40	low	.	.	.	.	.	ENSG00000187546.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SOX6	SOX6	-/.	-/.	chr11:16721498	chr11:16721513	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000110693.18	ENSG00000110693.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
LDB2(152),AC106894.1(74445)	LDB2(223),AC106894.1(74374)	./.	./.	chr4:16898830	chr4:16898901	intergenic	intergenic	duplication/ITD	0	0	0	99	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
RABGAP1L	RABGAP1L	+/.	+/.	chr1:174866103	chr1:174866164	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000152061.23	ENSG00000152061.23	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	NDOR1	+/.	+/.	chr2:32916551	chr9:137205865	intron	CDS	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000188566.14	.	.	downstream	upstream	mismatches	.	.	.
FH(8961),KMO(3418)	FH(9019),KMO(3360)	./.	./.	chr1:241528716	chr1:241528774	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PLCL1	PLCL1	+/.	+/.	chr2:198277592	chr2:198277691	intron	intron	duplication/ITD	0	0	0	23	260	low	.	.	.	.	.	ENSG00000115896.16	ENSG00000115896.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC023034.1	+/.	+/.	chr15:81683461	chr15:81683470	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	chr15:81683461	chr15:81683470	intron	intron	duplication/3'-3'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
NALCN-AS1	NALCN-AS1	+/.	+/.	chr13:100719764	chr13:100719817	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000233009.1	ENSG00000233009.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683461	chr15:81683470	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	LY6E(14625),C8orf31(752)	-/.	./.	chr6:42262584	chr8:143038457	intron	intergenic	translocation	0	0	0	2501	171	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	upstream	mismatches	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683461	chr15:81683470	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	chr15:81683461	chr15:81683470	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259692.6	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392799	chr1:90392810	intron	intron	duplication/ITD	0	0	0	326	201	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565292	chr15:81683525	intron	intron	duplication	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy	.	.	.
NXF2(27557),NXF2B(6117)	NXF2(27655),NXF2B(6019)	./.	./.	chrX:102354279	chrX:102354377	intergenic	intergenic	duplication/ITD	0	0	0	0	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC097488.1(216924),ARHGAP24(11314)	TRERF1	./.	-/.	chr4:85463836	chr6:42262496	intergenic	intron	translocation	0	0	0	0	3756	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004129.3(1823),U3(5704)	AC004129.3(1879),U3(5648)	./.	./.	chr7:25258952	chr7:25259008	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
AC060809.1	GPC3	+/.	-/.	chr15:81565292	chrX:133661640	intron	intron	translocation/3'-3'	0	0	0	216	195	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000147257.15	.	.	upstream	downstream	low_entropy	.	.	.
AC004129.3(1823),U3(5704)	AC004129.3(1873),U3(5654)	./.	./.	chr7:25258952	chr7:25259002	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SEPTIN8	SEPTIN8	-/.	-/.	chr5:132788163	chr5:132788228	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000164402.14	ENSG00000164402.14	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
MIR4277(2504),AC112176.1(13777)	SYT7	./.	-/.	chr5:1711372	chr11:61549903	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000011347.10	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092944.1	AC092944.1	+/.	+/.	chr3:157252470	chr3:157252545	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000243176.6	ENSG00000243176.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAPRE3(5362),TMEM214(329)	AC055854.1	./.	+/.	chr2:27032581	chr8:22744722	intergenic	exon	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000253125.1	.	.	downstream	upstream	mismatches(1)	.	.	.
MYH6(4393),MYH7(74)	MYH7	./.	-/.	chr14:23412666	chr14:23413104	intergenic	intron	deletion/read-through	0	0	0	1	1	low	.	.	.	.	.	.	ENSG00000092054.13	.	.	downstream	upstream	read_through	.	.	.
LINC00486	PPIAP88(94815),RNU6-996P(24709)	+/.	./.	chr2:32916555	chr9:107638431	intron	intergenic	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
HOXD13(2465),HOXD12(1386)	TRERF1	./.	-/.	chr2:176098409	chr6:42262467	intergenic	intron	translocation	0	0	0	0	3576	low	.	.	.	.	.	.	ENSG00000124496.12	.	.	upstream	upstream	mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3852),GPN2(7824)	./.	./.	chr1:26868241	chr1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(122),low_entropy(20)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262466	chr6:42262481	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	duplicates(4),low_entropy(2),merge_adjacent	.	.	.
ERC2	AP001823.1(3452),ELMOD1(736)	-/.	./.	chr3:56343193	chr11:107590355	intron	intergenic	translocation	0	0	0	1	685	low	.	.	.	.	.	ENSG00000187672.14	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117381	chr10:113117390	intron	intron	duplication/ITD	0	0	0	266	197	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(4),low_entropy(3),merge_adjacent	.	.	.
ALX4(73489),AC010768.4(84836)	AP003390.1(4496),AP001994.1(77185)	./.	./.	chr11:44383628	chr11:119744119	intergenic	intergenic	inversion	0	0	0	0	1441	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HTR1E(42954),AL138827.1(10523)	MMP2-AS1	./.	-/.	chr6:87059633	chr16:55433378	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000260135.7	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22750),NRXN3(87345)	AC011474.1	./.	-/.	chr14:78083028	chr19:29447568	intergenic	intron	translocation	0	0	0	671	53	low	.	.	.	.	.	.	ENSG00000264515.6	.	.	downstream	downstream	mismatches	.	.	.
AC244102.3	AC244102.3	-/.	-/.	chrX:152576447	chrX:152576458	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000287394.1	ENSG00000287394.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAPKAPK3	AP003472.1	+/+	-/+	chr3:50617656	chr8:100434369	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000114738.11	ENSG00000253824.2	.	.	downstream	upstream	mismatches(1)	.	.	.
MANBA	CARD11	-/+	-/-	chr4:102684493	chr7:2928698	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109323.11	ENSG00000198286.10	.	.	downstream	downstream	mismatches(1)	.	.	.
MANBA	CU639417.5(2825),SIK1B(16899)	-/.	./.	chr4:102684493	chr21:6094232	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000109323.11	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GPR89B	GPR89B	+/.	+/.	chr1:147970492	chr1:147970507	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000188092.15	ENSG00000188092.15	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
MANBA	TECPR1	-/.	-/.	chr4:102684493	chr7:98229024	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000109323.11	ENSG00000205356.10	.	.	downstream	downstream	mismatches(1)	.	.	.
C16orf95	BICC1	-/-	+/-	chr16:87317152	chr10:58688000	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260456.7	ENSG00000122870.12	.	.	upstream	downstream	duplicates(1)	.	.	.
NELFB	AC005821.1	+/.	+/.	chr9:137272635	chr17:62738714	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188986.9	ENSG00000265702.2	.	.	downstream	upstream	mismatches(1)	.	.	.
GDF6	MIR4300HG	-/-	-/-	chr8:96144245	chr11:82143168	3'UTR	intron	translocation	0	0	0	0	719	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466.10	ENSG00000245832.7	.	.	upstream	downstream	mismatches(1)	.	.	.
NELFB	MARCHF10	+/.	-/.	chr9:137272635	chr17:62738714	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188986.9	ENSG00000173838.12	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22676),NRXN3(87419)	LTBP4	./.	+/.	chr14:78082954	chr19:40594139	intergenic	intron	translocation	0	0	0	455	0	low	.	.	.	.	.	.	ENSG00000090006.18	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003059.2(10734),PRSS23(14858)	AP003059.2(10801),PRSS23(14791)	./.	./.	chr11:86776201	chr11:86776268	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	LMNTD1(20091),RN7SKP262(110617)	-/.	./.	chr6:42262560	chr12:25668670	intron	intergenic	translocation	0	0	0	3754	10	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22673),NRXN3(87422)	FXNP1(22684),NRXN3(87411)	./.	./.	chr14:78082951	chr14:78082962	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270727.1:351702	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	uninteresting_contigs	.	.	.
NR5A1	AL353586.1	-/-	+/+	chr9:124507413	chr10:12889013	5'UTR	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000285520.1	.	.	upstream	upstream	mismatches(1)	.	.	.
FXNP1(22681),NRXN3(87414)	FXNP1(22690),NRXN3(87405)	./.	./.	chr14:78082959	chr14:78082968	intergenic	intergenic	duplication/ITD	0	0	0	455	195	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DMD	DMD	-/.	-/.	chrX:31943879	chrX:31943928	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(1)	.	.	.
BBS9	FGFR1	+/.	-/.	chr7:33410882	chr8:38432916	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000122507.21	ENSG00000077782.21	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC044798.3	AC044798.3	-/.	-/.	chr16:49212141	chr16:49212156	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000287469.1	ENSG00000287469.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
BAIAP2L1(188),PPIAP82(52841)	.	./.	./.	chr7:98401278	KI270733.1:176193	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
AL159169.1(42924),AL159169.3(11800)	AL159169.1(42939),AL159169.3(11785)	./.	./.	chr9:14574966	chr9:14574981	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	chr7:26469909	chr7:26469918	intron	intron	duplication/ITD	0	0	0	48	9	low	.	.	.	.	.	ENSG00000214870.9	ENSG00000214870.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
OTX2P1(77483),PCSK5(88586)	Z83818.2	./.	-/.	chr9:75802058	chrX:87716930	intergenic	intron	translocation	0	0	0	24	14	low	.	.	.	.	.	.	ENSG00000282914.1	.	.	downstream	upstream	mismatches(1)	.	.	.
AC142116.2(42658),AC023347.1(62464)	AC142116.2(42711),AC023347.1(62411)	./.	./.	chr2:126246030	chr2:126246083	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ACSL6	UBE2G1	-/.	-/.	chr5:131999702	chr17:4366104	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164398.15	ENSG00000132388.12	.	.	upstream	upstream	mismatches(1)	.	.	.
WASF2	HS3ST4	-/.	+/.	chr1:27456878	chr16:25691966	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000158195.11	ENSG00000182601.7	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683464	chr15:81683473	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(1)	.	.	.
AC004540.1	.	+/.	./.	chr7:26469927	KI270733.1:148270	intron	intergenic	translocation	0	0	0	48	.	low	.	.	.	.	.	ENSG00000214870.9	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916571	chr21:8442048	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
AP001823.1(3440),ELMOD1(748)	AP001823.1(3449),ELMOD1(739)	./.	./.	chr11:107590343	chr11:107590352	intergenic	intergenic	duplication/ITD	0	0	0	685	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC002386.1(19269),AC073071.1(176397)	CFAP58	./.	+/.	chr7:109345584	chr10:104396382	intergenic	intron	translocation	0	0	0	0	217	low	.	.	.	.	.	.	ENSG00000120051.15	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916555	chr21:8442047	intron	intron	translocation	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	low_entropy	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396540	chr8:22396549	intron	intron	duplication/ITD	0	0	0	308	306	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(8),low_entropy(1),merge_adjacent	.	.	.
LIPG(20228),SMUG1P1(30937)	Z97192.4(51716),AL023802.1(1369)	./.	./.	chr18:49619413	chr22:49716684	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	chr3:120125706	chr3:120125754	intron	intron	duplication/ITD	0	0	0	306	306	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000242622.2	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC084768.2(26605),AC087369.1(105288)	AC084768.2(26620),AC087369.1(105273)	./.	./.	chr8:5743409	chr8:5743424	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAP3K7(258411),AL080284.1(544830)	MAP3K7(258424),AL080284.1(544817)	./.	./.	chr6:90845483	chr6:90845496	intergenic	intergenic	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
AL390783.1	AL390783.1	-/.	-/.	chr10:18220233	chr10:18220246	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000235020.5	ENSG00000235020.5	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ARHGEF18	TTLL1	+/.	-/.	chr19:7385858	chr22:43079851	intron	intron	translocation/3'-3'	0	0	0	20	4	low	.	.	.	.	.	ENSG00000104880.19	ENSG00000100271.17	.	.	upstream	downstream	mismatches(1)	.	.	.
POP4(20368),PLEKHF1(27854)	TTLL1	./.	-/.	chr19:29637605	chr22:43079851	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000100271.17	.	.	upstream	downstream	mismatches(1)	.	.	.
BEND3	POP4(20364),PLEKHF1(27858)	-/-	./+	chr6:107115154	chr19:29637601	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178409.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BEND3	AC008798.1(9216),AC008507.3(4777)	-/-	./+	chr6:107115154	chr19:29911085	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178409.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IGH-@-ext	IGH-@-ext	+/+	+/+	chr14:106419214	chr14:106419203	exon	exon	duplication/ITD	0	0	0	86	0	low	.	.	.	.	.	IGH-.g@-ext	IGH-.g@-ext	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
CTBP2	AC008798.1(9216),AC008507.3(4777)	-/.	./.	chr10:125160762	chr19:29911085	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175029.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ONECUT3	POP4(20364),PLEKHF1(27858)	+/+	./+	chr19:1775467	chr19:29637601	3'UTR	intergenic	deletion	0	0	0	0	0	low	.	.	CUT_domain(100%),Homeodomain(100%)|	.	.	ENSG00000205922.5	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01503	.	+/.	./.	chr9:129355193	GL000220.1:158233	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000233901.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PTPRG	MIATNB(65498),LINC01422(12243)	+/.	./.	chr3:61563137	chr22:26846391	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144724.20	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	USP9YP6	+/.	-/.	chr15:81565294	chrY:17913613	intron	intron	translocation/3'-3'	0	0	0	216	31	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000226116.1	.	.	upstream	downstream	low_entropy	.	.	.
CCDC37-DT	POP4(20364),PLEKHF1(27858)	-/.	./.	chr3:126394805	chr19:29637601	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249833.7	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565300	chr15:81683524	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	low_entropy	.	.	.
TRERF1	LMNTD1(20091),RN7SKP262(110617)	-/.	./.	chr6:42262564	chr12:25668670	intron	intergenic	translocation	0	0	0	3473	10	low	.	.	.	.	.	ENSG00000124496.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008739.1(16617),ZNF430(20807)	POP4(20364),PLEKHF1(27858)	./.	./.	chr19:20999827	chr19:29637601	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CCDC144NL-AS1	CCDC144NL-AS1	+/.	+/.	chr17:20905522	chr17:20905585	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000233098.9	ENSG00000233098.9	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
RFXAP	AC008798.1(9216),AC008507.3(4777)	+/.	./.	chr13:36819379	chr19:29911085	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000133111.4	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CTBP2	ARHGEF18	-/.	+/.	chr10:125160762	chr19:7385854	intron	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000175029.17	ENSG00000104880.19	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479908	chr11:88092338	intron	intron	translocation	0	0	0	855	783	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	downstream	upstream	mismatches	.	.	.
LINC01198(14967),LRCH1(22243)	AC060809.1	./.	+/.	chr13:46530925	chr15:81565292	intergenic	intron	translocation	0	0	0	83	216	low	.	.	.	.	.	.	ENSG00000259543.1	.	.	upstream	upstream	low_entropy	.	.	.
ONECUT3	ARHGEF18	+/+	+/+	chr19:1775467	chr19:7385854	3'UTR	intron	deletion	0	0	0	0	20	low	.	.	CUT_domain(100%),Homeodomain(100%)|PH_domain(100%),RhoGEF_domain(100%)	.	.	ENSG00000205922.5	ENSG00000104880.19	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC37-DT	ARHGEF18	-/.	+/.	chr3:126394805	chr19:7385854	exon	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000249833.7	ENSG00000104880.19	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	chr10:113117364	chr10:113117455	intron	intron	duplication/ITD	0	0	0	266	254	low	.	.	.	.	.	ENSG00000148737.17	ENSG00000148737.17	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
LINC00486	LINC02074	+/.	-/.	chr2:32916556	chr17:74055468	intron	intron	translocation/5'-5'	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000266357.6	.	.	downstream	upstream	mismatches	.	.	.
RFXAP	ARHGEF18	+/.	+/.	chr13:36819379	chr19:7385854	CDS	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000133111.4	ENSG00000104880.19	.	.	upstream	upstream	mismatches(1)	.	.	.
UBAP1L	ARHGEF18	-/-	+/+	chr15:65102283	chr19:7385854	CDS	intron	translocation	0	0	0	0	20	low	.	.	|PH_domain(100%),RhoGEF_domain(100%)	.	.	ENSG00000246922.9	ENSG00000104880.19	.	.	upstream	upstream	mismatches(1)	.	.	.
PARP11-AS1	PARP11-AS1	+/.	+/.	chr12:3882591	chr12:3882625	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000256862.3	ENSG00000256862.3	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGEF18	AC008739.1(16617),ZNF430(20807)	+/.	./.	chr19:7385854	chr19:20999827	intron	intergenic	inversion	0	0	0	20	0	low	.	.	.	.	.	ENSG00000104880.19	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01376	LINC00486	-/.	+/.	chr2:18999536	chr2:32916556	intron	intron	duplication/5'-5'	0	0	0	4	1606	low	.	.	.	.	.	ENSG00000236204.6	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
NCOA5LP(16498),CNEP1R1(39182)	AL008638.2	./.	-/.	chr16:49985228	chr22:27053562	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000236858.2	.	.	upstream	downstream	mismatches(1)	.	.	.
ROBO1	CCDC200	-/.	-/.	chr3:79598016	chr17:43251352	intron	intron	translocation	0	0	0	6	1	low	.	.	.	.	.	ENSG00000169855.20	ENSG00000236383.8	.	.	upstream	downstream	mismatches(1)	.	.	.
DNPH1(8993),TTBK1(5007)	DNPH1(9037),TTBK1(4963)	./.	./.	chr6:43238474	chr6:43238518	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	IPMK	+/.	-/.	chr2:32916556	chr10:58242933	intron	intron	translocation/5'-5'	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000151151.6	.	.	downstream	upstream	mismatches	.	.	.
MCFD2	CCSER1	-/.	+/.	chr2:46941038	chr4:90819174	intron	intron	translocation/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000180398.13	ENSG00000184305.15	.	.	upstream	downstream	mismatches(1)	.	.	.
CWH43(35606),AC118282.3(105484)	Metazoa_SRP(52184),PLCB4(17479)	./.	./.	chr4:49097687	chr20:9051284	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	COLEC10	+/.	+/.	chr2:32916556	chr8:119070569	intron	intron	translocation	0	0	0	1606	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000184374.3	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	AC243830.1(111636),LHX1-DT(23692)	+/.	./.	chr2:32916556	chr17:36837982	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	ADAMTSL2	+/.	+/.	chr2:32916556	chr9:133563904	intron	intron	translocation/5'-5'	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000197859.11	.	.	downstream	downstream	mismatches	.	.	.
SIM1	LRRC36	-/.	+/.	chr6:100458071	chr16:67331085	intron	intron	translocation	0	0	0	69	25	low	.	.	.	.	.	ENSG00000112246.10	ENSG00000159708.18	.	.	downstream	downstream	mismatches(1)	.	.	.
RBMS3	RBMS3	+/.	+/.	chr3:29884418	chr3:29884472	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000144642.22	ENSG00000144642.22	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CSNKA2IP	COL23A1	+/.	-/.	chr3:88415602	chr5:178327343	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283434.2	ENSG00000050767.18	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	BNC2	+/.	-/.	chr2:32916556	chr9:16539630	intron	intron	translocation	0	0	0	1606	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000173068.18	.	.	downstream	downstream	mismatches	.	.	.
RPSAP2(46113),NOP56P1(4616)	EGLN3-AS1	./.	+/.	chr6:28779017	chr14:34047027	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000258897.1	.	.	downstream	downstream	mismatches(1)	.	.	.
SPANXD(94022),MAGEC3(45555)	SPANXD(94079),MAGEC3(45498)	./.	./.	chrX:141792761	chrX:141792818	intergenic	intergenic	duplication/ITD	0	0	0	62	62	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275759	chr13:49275796	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
LINC00486	RPS6P21(33866),SFSWAP(8969)	+/.	./.	chr2:32916556	chr12:131702112	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
KMO	KRT18P55	+/.	-/.	chr1:241572822	chr17:28307146	intron	exon	translocation	0	0	0	1	4	low	.	.	.	.	.	ENSG00000117009.12	ENSG00000265480.5	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL32P20(26580),AF186190.1(39227)	AP003071.2(80433),MYEOV(42154)	./.	./.	chr8:133352984	chr11:69251997	intergenic	intergenic	translocation	0	0	0	4	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003071.2(80433),MYEOV(42154)	HAUS4(2346),AJUBA(11670)	./.	./.	chr11:69251997	chr14:22959507	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL32P20(26580),AF186190.1(39227)	NRG4(66),TMEM266(97)	./.	./.	chr8:133352984	chr15:76059861	intergenic	intergenic	translocation	0	0	0	4	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CD81	SYCN	+/+	-/-	chr11:2377523	chr19:39203079	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	|Syncollin(1%)	.	.	ENSG00000110651.12	ENSG00000179751.7	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL32P20(26580),AF186190.1(39227)	NDOR1	./.	+/.	chr8:133352984	chr9:137205865	intergenic	CDS	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000188566.14	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(24898),AL583803.1(98302)	LINC02620	./.	-/.	chr6:130599010	chr10:104479905	intergenic	intron	translocation	0	0	0	0	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches(1)	.	.	.
DTNBP1(65874),ARPC3P5(205850)	DTNBP1(65889),ARPC3P5(205835)	./.	./.	chr6:15728932	chr6:15728947	intergenic	intergenic	duplication/ITD	0	0	0	654	654	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(22),low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	chr11:82143098	chr11:82143107	intron	intron	duplication/ITD	0	0	0	748	654	low	.	.	.	.	.	ENSG00000245832.7	ENSG00000245832.7	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
NDOR1	HAUS4(2346),AJUBA(11670)	+/.	./.	chr9:137205865	chr14:22959507	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188566.14	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF675	ZNF675	-/.	-/.	chr19:23652314	chr19:23652327	intron	intron	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	ENSG00000197372.10	ENSG00000197372.10	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZBTB44	AC116903.2	-/.	-/.	chr11:130314625	chr15:92306156	5'UTR	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000196323.14	ENSG00000260661.1	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM150B	TMEM150B	-/.	-/.	chr19:55331420	chr19:55331431	intron	intron	duplication/ITD	0	0	0	67	64	low	.	.	.	.	.	ENSG00000180061.10	ENSG00000180061.10	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956914	chr17:75956925	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	FAM8A1(2932),NUP153(388)	+/.	./.	chr2:32916556	chr6:17614647	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176194	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
INTS6P1(32908),GCSHP1(134155)	INTS6P1(32921),GCSHP1(134142)	./.	./.	chr5:39754421	chr5:39754434	intergenic	intergenic	duplication/ITD	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL355674.1(96158),RORB-AS1(4815)	AL355674.1(96169),RORB-AS1(4804)	./.	./.	chr9:74480736	chr9:74480747	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8442081	intron	intron	translocation/5'-5'	0	0	0	1606	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
AL355674.1(96160),RORB-AS1(4813)	AL355674.1(96169),RORB-AS1(4804)	./.	./.	chr9:74480738	chr9:74480747	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC025580.2	AC025580.2	+/.	+/.	chr15:45462139	chr15:45462237	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000259354.5	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC00486	MYL10(431),CUX1(186177)	+/.	./.	chr2:32916556	chr7:101629727	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
AL355674.1(96165),RORB-AS1(4808)	AL355674.1(96174),RORB-AS1(4799)	./.	./.	chr9:74480743	chr9:74480752	intergenic	intergenic	duplication/ITD	0	0	0	89	83	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
AC022215.2	RPSAP2(46091),NOP56P1(4638)	-/.	./.	chr3:141268207	chr6:28778995	intron	intergenic	translocation	0	0	0	9	28	low	.	.	.	.	.	ENSG00000287155.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AC006037.2(18465),AC006037.1(6126)	./.	./.	chr2:234102940	chr2:234102955	intergenic	intergenic	duplication/ITD	0	0	0	14	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(3)	.	.	.
SGCD	SGCD	+/.	+/.	chr5:156444065	chr5:156444080	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000170624.14	ENSG00000170624.14	.	.	upstream	downstream	low_entropy(1)	.	.	.
KLHL29	KLHL29	+/.	+/.	chr2:23670919	chr2:23670934	intron	intron	duplication/ITD	0	0	0	25	19	low	.	.	.	.	.	ENSG00000119771.15	ENSG00000119771.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CACNG3	CACNG3	+/.	+/.	chr16:24257365	chr16:24257423	intron	intron	duplication/ITD	0	0	0	95	95	low	.	.	.	.	.	ENSG00000006116.4	ENSG00000006116.4	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	chr1:90392824	chr1:90392833	intron	intron	duplication/ITD	0	0	0	334	326	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000287372.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MCC	MMADHC-DT	-/-	+/+	chr5:113064032	chr2:149624275	CDS	intron	translocation	0	0	0	0	1	low	.	.	EF-hand_domain_pair(100%),PDZ_domain_of_MCC-2_bdg_protein_for_Usher_syndrome(48%)|	.	.	ENSG00000171444.18	ENSG00000231969.2	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008894.3	AC027369.3	-/-	-/+	chr19:16077350	chr11:48893591	exon	intron	translocation/5'-5'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000279198.1	ENSG00000254728.1	.	.	upstream	upstream	mismatches(1)	.	.	.
AP2B1	AP2B1	+/.	+/.	chr17:35583511	chr17:35583555	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000006125.18	ENSG00000006125.18	.	.	upstream	downstream	duplicates(5),low_entropy(6)	.	.	.
TAB3(1922),FTHL17(94227)	TAB3(1935),FTHL17(94214)	./.	./.	chrX:30977006	chrX:30977019	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LIG4	MMP2-AS1	-/.	-/.	chr13:108215159	chr16:55433378	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174405.14	ENSG00000260135.7	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	CSRP3	+/.	-/.	chr2:32916556	chr11:19204576	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000129170.10	.	.	downstream	downstream	mismatches	.	.	.
PRPF40A	FP236383.3	-/.	+/.	chr2:152717656	chr21:8392569	5'UTR	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000196504.19	ENSG00000280441.3	.	.	downstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	chrX:31187734	chrX:31187743	intron	intron	duplication/ITD	0	0	0	73	73	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC00486	TEX48(415),AL160275.1(13315)	+/.	./.	chr2:32916556	chr9:114682607	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FAM224B(12611),CLUHP1(28894)	+/.	./.	chr2:32916556	chrY:17592365	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	CLUHP2(28881),FAM224A(12611)	+/.	./.	chr2:32916556	chrY:18313642	intron	intergenic	translocation	0	0	0	1606	0	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	mismatches	.	.	.
PCYT1B	SND1	-/-	+/-	chrX:24647264	chr7:128022712	5'UTR	intron	translocation/5'-5'	0	0	0	8	3	low	.	.	.	.	.	ENSG00000102230.14	ENSG00000197157.11	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	AC226101.1	+/.	+/.	chr2:32916525	chr2:110611070	intron	exon	deletion	0	0	0	1632	4	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000231536.1	.	.	downstream	upstream	mismatches	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021207	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
ABCC1	ABCC1	+/.	+/.	chr16:15999761	chr16:15999811	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000103222.20	ENSG00000103222.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02590(3045),RNU6-242P(44561)	LINC02590(3056),RNU6-242P(44550)	./.	./.	chr2:43046827	chr2:43046838	intergenic	intergenic	duplication/ITD	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
NRXN1	LINC00486	-/-	+/-	chr2:50346877	chr2:32916525	CDS	intron	deletion/5'-5'	0	0	0	3	1632	low	.	.	EGF-like_domain(100%),Laminin_G_domain(82%)|	.	.	ENSG00000179915.24	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
EXOC3	LINC00486	+/+	+/-	chr5:443254	chr2:32916525	5'UTR	intron	translocation/5'-5'	0	0	0	3	1632	low	.	.	.	.	.	ENSG00000180104.16	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
DDB2	FP671120.7(729),5_8S_rRNA(538)	+/.	./.	chr11:47233105	chr21:8256243	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RBFOX3(64112),AC233701.1(17772)	CR392039.1(647),CR392039.3(8419)	./.	./.	chr17:79580260	chr21:8988077	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	ABCG1	+/.	+/.	chr2:32916597	chr21:42219230	intron	5'UTR	translocation	0	0	0	46	3	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000160179.19	.	.	downstream	upstream	mismatches	.	.	.
C11orf80	LINC00486	+/+	+/-	chr11:66744844	chr2:32916525	5'UTR	intron	translocation/5'-5'	0	0	0	3	1632	low	.	.	.	.	.	ENSG00000173715.18	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
HEBP1	HEBP1	-/.	-/.	chr12:12987581	chr12:12987635	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000013583.10	ENSG00000013583.10	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
C11orf80	LINC00486	+/+	+/-	chr11:66744844	chr2:32916565	5'UTR	intron	translocation/5'-5'	0	0	0	3	1588	low	.	.	.	.	.	ENSG00000173715.18	ENSG00000230876.8	.	.	downstream	downstream	mismatches	.	.	.
ADH5P2(101430),AC099671.1(344100)	FOXB2(2167),ATP5MFP3(17296)	./.	./.	chr1:79623633	chr9:77023120	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAF	LINC00486	-/-	+/-	chr16:79599203	chr2:32916597	CDS	intron	translocation/5'-5'	0	0	0	3	46	low	.	.	Maf_N-terminal_region(100%)|	.	.	ENSG00000178573.7	ENSG00000230876.8	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	chr2:32916556	chr21:8216913	intron	intron	translocation	0	0	0	1606	603	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000278996.1	.	.	downstream	upstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392888	chr11:88092437	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	AC074387.1(61),RGPD5(32333)	+/.	./.	chr2:32916565	chr2:109760425	intron	intergenic	inversion	0	0	0	1588	4	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
AC060809.1	AC104041.1	+/.	-/.	chr15:81565294	chr15:81683520	intron	intron	duplication/3'-3'	0	0	0	216	149	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259692.6	.	.	upstream	downstream	duplicates	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392888	chr11:88092443	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	AC074387.1(61),RGPD5(32333)	+/.	./.	chr2:32916597	chr2:109760425	intron	intergenic	inversion	0	0	0	46	4	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
MPPED2	FUT8	-/.	+/.	chr11:30586257	chr14:65662720	5'UTR	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000066382.17	ENSG00000033170.17	.	.	downstream	upstream	mismatches(1)	.	.	.
SWAP70	SWAP70	+/.	+/.	chr11:9675322	chr11:9675415	intron	intron	duplication/ITD	0	0	0	40	41	low	.	.	.	.	.	ENSG00000133789.15	ENSG00000133789.15	.	.	upstream	downstream	low_entropy(2)	.	.	.
ADGRL4(37504),AL353651.2(4141),AL353651.1(4141)	ADGRL4(37517),AL353651.2(4128),AL353651.1(4128)	./.	./.	chr1:79319628	chr1:79319641	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(5)	.	.	.
LINC02714(167750),AP003062.2(13558)	PCSK6	./.	-/.	chr11:134931560	chr15:101358825	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000140479.18	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAJA1P2(37393),GALNT13(71883)	DNAJA1P2(37438),GALNT13(71838)	./.	./.	chr2:153800039	chr2:153800084	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
POP4(20364),PLEKHF1(27858)	AC008798.2(31826),AC008798.1(28052)	./.	./.	chr19:29637601	chr19:29873644	intergenic	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ENAH	SLC25A53	-/.	-/.	chr1:225578637	chrX:104116128	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000154380.17	ENSG00000269743.3	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	MT-RNR2	+/.	+/.	chr2:32916569	chrM:2788	intron	exon	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000210082.2	.	.	downstream	upstream	uninteresting_contigs	.	.	.
CENPC	EEF1A2	-/.	-/.	chr4:67475300	chr20:63495978	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145241.11	ENSG00000101210.13	.	.	downstream	downstream	mismatches(1)	.	.	.
EBF1	EEF1A2	-/.	-/.	chr5:158954348	chr20:63495978	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164330.17	ENSG00000101210.13	.	.	upstream	downstream	mismatches(1)	.	.	.
PRDM1	5_8S_rRNA(2088),FP236383.3(121622)	+/+	./+	chr6:106098661	chr21:8259021	5'UTR	intergenic	translocation	0	0	0	0	35	low	.	.	SET_domain(12%)|	.	.	ENSG00000057657.17	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002386.1(19269),AC073071.1(176397)	LINC02620	./.	-/.	chr7:109345584	chr10:104479827	intergenic	intron	translocation	0	0	0	0	992	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL32P20(26580),AF186190.1(39227)	SLFN13	./.	-/.	chr8:133352984	chr17:35448412	intergenic	intron	translocation	0	0	0	4	2	low	.	.	.	.	.	.	ENSG00000154760.14	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003071.2(33570),MYEOV(89017)	AL031073.2	./.	+/.	chr11:69205134	chrX:142715620	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000288098.1	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01445	LINC01445	+/.	+/.	chr7:54418991	chr7:54419035	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000231427.6	ENSG00000231427.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81565288	chr15:81565363	intron	intron	duplication/ITD	0	0	0	216	199	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
INTS5(475),C11orf98(9040),LBHD1(9040)	INTS5(492),C11orf98(9023),LBHD1(9023)	./.	./.	chr11:62653777	chr11:62653794	intergenic	intergenic	duplication/ITD	0	0	0	105	93	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
AC060809.1	.	+/.	./.	chr15:81565298	KI270733.1:148208	intron	intergenic	translocation	0	0	0	216	.	low	.	.	.	.	.	ENSG00000259543.1	.	.	.	upstream	upstream	uninteresting_contigs	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	chr12:105046145	chr12:105046190	intron	intron	duplication/ITD	0	0	0	1664	1664	low	.	.	.	.	.	ENSG00000136010.14	ENSG00000136010.14	.	.	upstream	downstream	duplicates(10),merge_adjacent	.	.	.
DMD	DMD	-/.	-/.	chrX:31187718	chrX:31187733	intron	intron	duplication/ITD	0	0	0	73	69	low	.	.	.	.	.	ENSG00000198947.17	ENSG00000198947.17	.	.	upstream	downstream	duplicates(15),low_entropy(5)	.	.	.
LINC00486	.	+/.	./.	chr2:32916570	KI270733.1:176185	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
DDB2	.	+/.	./.	chr11:47233105	GL000220.1:111487	intron	intergenic	translocation	0	0	0	26	.	low	.	.	.	.	.	ENSG00000134574.12	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	KCTD16	+/.	+/.	chr2:32916556	chr5:144205009	intron	intron	translocation/5'-5'	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000183775.11	.	.	downstream	downstream	mismatches	.	.	.
SLC29A4P2	ACTN4	+/.	+/.	chr7:63557030	chr19:38666177	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000214660.6	ENSG00000130402.13	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
KCNMB2	AL359710.1	+/.	-/.	chr3:178655148	chr9:99614515	intron	intron	translocation/5'-5'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000197584.12	ENSG00000237461.2	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916570	chr21:8442048	intron	intron	translocation	0	0	0	1588	2539	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021158	chr11:41021215	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(126),low_entropy(3),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916570	KI270733.1:131106	intron	intergenic	translocation	0	0	0	1588	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SFN(3791),GPN2(7885)	SFN(3837),GPN2(7839)	./.	./.	chr1:26868247	chr1:26868293	intergenic	intergenic	duplication/ITD	0	0	0	236	236	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RNU1-154P(711),AC239860.2(27394)	RNU1-154P(726),AC239860.2(27379)	./.	./.	chr1:145432404	chr1:145432419	intergenic	intergenic	duplication/ITD	0	0	0	188	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(24),low_entropy(4)	.	.	.
MIR3668(50092),AL035446.2(320370)	LINC02625	./.	-/.	chr6:140255418	chr10:61812764	intergenic	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	.	ENSG00000233643.2	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01060	LINC02663(164937),LINC02670(15725)	+/.	./.	chr4:188533877	chr10:10042997	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378.6	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GALNT13	SPRY4-AS1	+/.	+/.	chr2:153899212	chr5:142509137	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	ENSG00000231185.7	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DAPK1	.	+/.	./.	chr9:87564614	GL000220.1:160360	intron	intergenic	translocation	0	0	0	9	.	low	.	.	.	.	.	ENSG00000196730.13	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GALNT13	MTND1P24(47650),LINC02400(16243)	+/.	./.	chr2:153899212	chr12:41747901	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MFF-DT	FP671120.4	-/-	+/+	chr2:227268528	chr21:8214781	exon	intron	translocation	0	0	0	0	2358	low	.	.	.	.	.	ENSG00000236432.8	ENSG00000278996.1	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
MIR3668(50092),AL035446.2(320370)	MTND1P24(47651),LINC02400(16242)	./.	./.	chr6:140255418	chr12:41747902	intergenic	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16358),AC016134.1(9510)	./.	./.	chr15:41599884	chr15:41599947	intergenic	intergenic	duplication/ITD	0	0	0	187	186	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL392003.1(83164),RGS4(5818)	MIR3668(50092),AL035446.2(320370)	./.	./.	chr1:163062957	chr6:140255418	intergenic	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GALNT13	TSBP1	+/.	-/.	chr2:153899212	chr6:32339918	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	ENSG00000204296.12	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GALNT13	AC009435.1	+/.	-/.	chr2:153899212	chr8:6158803	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144278.15	ENSG00000253880.1	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TSBP1-AS1	MIR3668(50092),AL035446.2(320370)	+/.	./.	chr6:32339919	chr6:140255418	intron	intergenic	inversion	0	0	0	0	26	low	.	.	.	.	.	ENSG00000225914.3	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TSBP1	MIR3668(50092),AL035446.2(320370)	-/.	./.	chr6:32339919	chr6:140255418	intron	intergenic	inversion	0	0	0	0	26	low	.	.	.	.	.	ENSG00000204296.12	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR3668(50092),AL035446.2(320370)	AC009435.1	./.	-/.	chr6:140255418	chr8:6158802	intergenic	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	.	ENSG00000253880.1	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FRY	FRY	+/.	+/.	chr13:31867306	chr13:31867368	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000073910.23	ENSG00000073910.23	.	.	upstream	downstream	low_entropy(1)	.	.	.
IQCB1	MIR3668(50092),AL035446.2(320370)	-/.	./.	chr3:121783777	chr6:140255418	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000173226.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021157	chr11:41021212	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479894	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates	.	.	.
AC023034.1	AC023034.1	+/.	+/.	chr15:81683470	chr15:81683479	intron	intron	duplication/ITD	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259594.6	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LINC01828	ITGAE	+/.	-/.	chr2:67293346	chr17:3736974	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235885.8	ENSG00000083457.12	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22694),NRXN3(87401)	.	./.	./.	chr14:78082972	KI270733.1:148270	intergenic	intergenic	translocation	0	0	0	673	.	low	.	.	.	.	.	.	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
AL353595.1	CCDC200	+/.	-/.	chr9:11645402	chr17:43251352	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000285784.1	ENSG00000236383.8	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	chr11:41021151	chr11:41021206	intron	intron	duplication/ITD	0	0	0	1436	1436	low	.	.	.	.	.	ENSG00000148948.8	ENSG00000148948.8	.	.	upstream	downstream	duplicates(3)	.	.	.
SLC12A6	AL031073.2	-/-	+/-	chr15:34232966	chrX:142715617	3'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Amino_acid_permease(100%),Solute_carrier_family_12(100%)|	.	.	ENSG00000140199.13	ENSG00000288098.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MFSD1	MFSD1	+/.	+/.	chr3:158827899	chr3:158827973	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000118855.21	ENSG00000118855.21	.	.	upstream	downstream	small_insert_size	.	.	.
MFSD1	MFSD1	+/.	+/.	chr3:158827892	chr3:158827973	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000118855.21	ENSG00000118855.21	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00486	NRG4(66),TMEM266(97)	+/.	./.	chr2:32916501	chr15:76059861	intron	intergenic	translocation	0	0	0	1644	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
IGKV1OR9-2(4963),AL353626.3(108327)	IGKV1OR9-2(4972),AL353626.3(108318)	./.	./.	chr9:40647080	chr9:40647089	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	.	+/.	./.	chr2:32916400	GL000220.1:116676	intron	intergenic	translocation	0	0	0	275	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
MEI4(54712),AL121718.1(622727)	MEI4(54727),AL121718.1(622712)	./.	./.	chr6:77981740	chr6:77981755	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
AP003390.1(4502),AP001994.1(77179)	C16orf95	./.	-/.	chr11:119744125	chr16:87214275	intergenic	intron	translocation	0	0	0	1348	0	low	.	.	.	.	.	.	ENSG00000260456.7	.	.	downstream	upstream	mismatches(1)	.	.	.
PINX1	SOD1P2(26624),SALL1(1330)	-/.	./.	chr8:10800291	chr16:51134645	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000254093.9	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262488	chr6:42262587	intron	intron	duplication/ITD	0	0	0	3756	2501	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC092910.3	NUP98	+/.	-/.	chr3:120125755	chr11:3702366	intron	intron	translocation	0	0	0	306	437	low	.	.	.	.	.	ENSG00000242622.2	ENSG00000110713.17	.	.	downstream	downstream	duplicates(5)	.	.	.
IGH@-ext	IGH@-ext	-/-	-/-	chr14:106419121	chr14:106419202	exon	exon	duplication/ITD	0	0	0	92	86	low	.	.	.	.	.	IGH.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
IGH-@-ext	IGH@-ext	+/.	-/.	chr14:106419121	chr14:106419196	exon	exon	duplication/3'-3'	0	0	0	92	92	low	.	.	.	.	.	IGH-.g@-ext	IGH.g@-ext	.	.	upstream	downstream	duplicates(2)	.	.	.
DOCK1	AP001599.1	+/.	+/.	chr10:127190675	chr21:26914103	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000150760.13	ENSG00000223563.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
INSYN2A	AP001599.1	-/.	+/.	chr10:127190675	chr21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000188916.9	ENSG00000223563.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
AL353637.1(17741),FOXB2(8806)	AP000821.1	./.	-/.	chr9:77010849	chr11:126101057	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261257.1	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI1	AP001599.1	-/.	+/.	chr3:65729129	chr21:26914103	intron	intron	translocation	0	0	0	18	15	low	.	.	.	.	.	ENSG00000151276.23	ENSG00000223563.1	.	.	downstream	downstream	homopolymer(1)	.	.	.
GREB1L	AP001599.1	+/.	+/.	chr18:21328178	chr21:26914103	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000141449.15	ENSG00000223563.1	.	.	upstream	downstream	homopolymer(1)	.	.	.
FBRS	AP001599.1	+/+	+/-	chr16:30669660	chr21:26914104	3'UTR	intron	translocation/5'-5'	0	0	0	0	15	low	.	.	Autism_susceptibility_gene_2_protein(100%)|	.	.	ENSG00000156860.16	ENSG00000223563.1	.	.	downstream	downstream	homopolymer(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392891	chr11:88092441	intron	intron	translocation/3'-3'	0	0	0	334	712	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	mismatches	.	.	.
C12orf66	AP001599.1	-/.	+/.	chr12:64221117	chr21:26914104	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000174206.13	ENSG00000223563.1	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC005256.1(4353),ONECUT3(408)	AP001599.1	./.	+/.	chr19:1753098	chr21:26914103	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000223563.1	.	.	downstream	downstream	homopolymer(1)	.	.	.
CEMIP2(21729),ABHD17B(24033)	LINC02663(164937),LINC02670(15725)	./.	./.	chr9:71838419	chr10:10042997	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	CHST11	-/.	+/.	chr10:104479819	chr12:104706484	intron	intron	translocation/5'-5'	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000171310.11	.	.	upstream	downstream	mismatches(1)	.	.	.
AC009505.1(61935),ECRG4(38925)	AP001599.1	./.	+/.	chr2:106024321	chr21:26914103	intergenic	intron	translocation	0	0	0	1	15	low	.	.	.	.	.	.	ENSG00000223563.1	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP4K4	AC138627.1	+/.	-/.	chr2:101785795	chr16:74247474	intron	intron	translocation/5'-5'	0	0	0	710	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000261404.7	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479817	chr10:104479826	intron	intron	duplication/ITD	0	0	0	984	840	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates(1),low_entropy(19)	.	.	.
LINC02620	CHST11	-/.	+/.	chr10:104479813	chr12:104706484	intron	intron	translocation/5'-5'	0	0	0	984	0	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000171310.11	.	.	upstream	downstream	mismatches(1)	.	.	.
EPHA4	EPHA4	-/.	-/.	chr2:221550411	chr2:221550454	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000116106.12	ENSG00000116106.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
TAOK1	AL160408.1	+/+	+/+	chr17:29390580	chr1:234665154	5'UTR	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000160551.12	ENSG00000228044.3	.	.	downstream	upstream	mismatches(1)	.	.	.
ADGRL4(37502),AL353651.2(4143),AL353651.1(4143)	ADGRL4(37517),AL353651.2(4128),AL353651.1(4128)	./.	./.	chr1:79319626	chr1:79319641	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TAOK1	AC092100.1	+/+	-/+	chr17:29390581	chr7:69336333	5'UTR	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000160551.12	ENSG00000225718.2	.	.	downstream	upstream	mismatches(1)	.	.	.
DIPK1C	AL117329.1	-/.	+/.	chr18:74457183	chr22:47854445	CDS	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000187773.9	ENSG00000224271.7	.	.	downstream	upstream	mismatches(1)	.	.	.
TAOK1	SOX5	+/+	-/+	chr17:29390577	chr12:23781666	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160551.12	ENSG00000134532.19	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092100.1	AP000821.1	-/.	-/.	chr7:69336333	chr11:126101059	intron	exon	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000225718.2	ENSG00000261257.1	.	.	upstream	downstream	mismatches(1)	.	.	.
TAOK1	AL353637.1(17741),FOXB2(8806)	+/+	./+	chr17:29390579	chr9:77010849	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160551.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TAOK1	AC016304.1(54226),TMCO5A(376610)	+/+	./-	chr17:29390579	chr15:37545329	5'UTR	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000160551.12	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2W	.	-/.	./.	chr8:73820102	GL000220.1:158220	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343.21	.	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(3)	.	.	.
TAOK1	AC007920.2(5745),RTP4(64707)	+/+	./+	chr17:29390578	chr3:187303678	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000160551.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP98	AC008083.2(60394),PPIAP45(2199)	-/.	./.	chr11:3702358	chr12:47339415	intron	intergenic	translocation	0	0	0	437	89	low	.	.	.	.	.	ENSG00000110713.17	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DOCK10	DOCK10	-/.	-/.	chr2:225039680	chr2:225039713	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000135905.20	ENSG00000135905.20	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL135923.2(170487),PTPRD(182535)	AL135923.2(170523),PTPRD(182499)	./.	./.	chr9:8131711	chr9:8131747	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:135581	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
AC026412.4	PLA2G12B	-/.	-/.	chr5:1642425	chr10:72947887	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000288549.1	ENSG00000138308.6	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	chr6:42262471	chr6:42262485	intron	intron	duplication/ITD	0	0	0	3576	2873	low	.	.	.	.	.	ENSG00000124496.12	ENSG00000124496.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SWAP70	SWAP70	+/.	+/.	chr11:9675312	chr11:9675407	intron	intron	duplication/ITD	0	0	0	1	41	low	.	.	.	.	.	ENSG00000133789.15	ENSG00000133789.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PLXNA4	PLXNA4	-/.	-/.	chr7:132189010	chr7:132189019	intron	intron	duplication/ITD	0	0	0	211	112	low	.	.	.	.	.	ENSG00000221866.9	ENSG00000221866.9	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
Z93929.1(11432),MDM4P1(21584)	Z93929.1(11445),MDM4P1(21571)	./.	./.	chrX:17911765	chrX:17911778	intergenic	intergenic	duplication/ITD	0	0	0	25	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ERBB4	ERBB4	-/.	-/.	chr2:212188186	chr2:212188199	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000178568.15	ENSG00000178568.15	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
H3C10	AC002463.1	+/.	+/.	chr6:27810927	chr7:112751480	3'UTR	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000278828.1	ENSG00000223646.2	.	.	upstream	upstream	mismatches(1)	.	.	.
TNR	TNR	-/.	-/.	chr1:175517008	chr1:175517071	intron	intron	duplication/ITD	0	0	0	27	27	low	.	.	.	.	.	ENSG00000116147.17	ENSG00000116147.17	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396490	chr8:22396588	intron	intron	duplication/ITD	0	0	0	66	308	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(8),low_entropy(3)	.	.	.
MAP4K4	MORC4	+/.	-/.	chr2:101785769	chrX:106941412	intron	3'UTR	translocation	0	0	0	764	0	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000133131.15	.	.	downstream	downstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661586	chrX:133661595	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CSAG3	CSAG3	+/.	+/.	chrX:152758797	chrX:152758864	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000268916.6	ENSG00000268916.6	.	.	upstream	downstream	low_entropy(3)	.	.	.
SEMA5B(2021),PDIA5(36399)	SEMA5B(2032),PDIA5(36388)	./.	./.	chr3:123030626	chr3:123030637	intergenic	intergenic	duplication/ITD	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1),merge_adjacent	.	.	.
NXF2(6011),NXF2B(27663)	NXF2(6024),NXF2B(27650)	./.	./.	chrX:102332733	chrX:102332746	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MARCHF3	.	-/.	./.	chr5:126930649	KI270733.1:131122	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000173926.6	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NXF2(27558),NXF2B(6116)	NXF2(27656),NXF2B(6018)	./.	./.	chrX:102354280	chrX:102354378	intergenic	intergenic	duplication/ITD	0	0	0	0	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
H3P11(26452),THRAP3P1(156974)	PLCB4	./.	+/.	chr3:31295858	chr20:9168925	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101333.18	.	.	downstream	upstream	mismatches(1)	.	.	.
PLEKHG1	PLEKHG1	+/.	+/.	chr6:150674635	chr6:150674644	intron	intron	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000120278.16	ENSG00000120278.16	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CARD18	CARD18	-/.	-/.	chr11:105491191	chr11:105491200	intron	intron	duplication/ITD	0	0	0	92	49	low	.	.	.	.	.	ENSG00000255501.3	ENSG00000255501.3	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158125	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661580	chrX:133661589	intron	intron	duplication/ITD	0	0	0	195	190	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TMEM154	TMEM154	-/.	-/.	chr4:152661294	chr4:152661303	intron	intron	duplication/ITD	0	0	0	99	93	low	.	.	.	.	.	ENSG00000170006.12	ENSG00000170006.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RORB	RORB	+/.	+/.	chr9:74654332	chr9:74654372	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000198963.11	ENSG00000198963.11	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	LINC00364(44532),AL512452.1(153098)	-/.	./.	chr10:104479901	chr13:67424526	intron	intergenic	translocation	0	0	0	855	0	low	.	.	.	.	.	ENSG00000225768.1	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02458	LINC02458	-/.	-/.	chr12:89164801	chr12:89164816	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000246363.3	ENSG00000246363.3	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC092100.1	CSF2RA	-/.	+/.	chr7:69336334	chrX:1308605	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000225718.2	ENSG00000198223.17	.	.	upstream	downstream	mismatches(1)	.	.	.
AC114485.1(331900),AC099567.1(41792)	AC114485.1(331954),AC099567.1(41738)	./.	./.	chr1:102721530	chr1:102721584	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	chr15:81683466	chr15:81683475	intron	intron	duplication	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259594.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	chr15:81683466	chr15:81683475	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259543.1	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
PRKN	NAT1	-/.	+/.	chr6:162063547	chr8:18179768	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185345.23	ENSG00000171428.15	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	chr15:81683466	chr15:81683475	intron	intron	duplication/5'-5'	0	0	0	149	126	low	.	.	.	.	.	ENSG00000259692.6	ENSG00000259594.6	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479902	intron	intron	duplication	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates	.	.	.
FAM214A	FAM214A	-/.	-/.	chr15:52679756	chr15:52679770	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000047346.12	ENSG00000047346.12	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479902	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479898	intron	intron	duplication/ITD	0	0	0	984	988	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479801	chr11:88092435	intron	intron	translocation	0	0	0	984	838	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates	.	.	.
LINC00486	RASA4CP	+/.	-/.	chr2:32916556	chr7:44039044	intron	intron	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000228903.7	.	.	downstream	downstream	mismatches	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479801	chr11:88092437	intron	intron	translocation	0	0	0	984	838	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates	.	.	.
ACOX1	ACOX1	-/.	-/.	chr17:75956923	chr17:75956932	intron	intron	duplication/ITD	0	0	0	67	65	low	.	.	.	.	.	ENSG00000161533.12	ENSG00000161533.12	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	AP005436.1	-/.	-/.	chr10:104479801	chr11:88092441	intron	intron	translocation	0	0	0	984	712	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000255102.1	.	.	upstream	downstream	duplicates	.	.	.
LY6E(14635),C8orf31(742)	LINC02620	./.	-/.	chr8:143038467	chr10:104479908	intergenic	intron	translocation	0	0	0	171	855	low	.	.	.	.	.	.	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
AP005436.1	FP236383.3	-/.	+/.	chr11:88092441	chr21:8403957	intron	intron	translocation	0	0	0	712	13	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000280441.3	.	.	downstream	downstream	mismatches	.	.	.
CFAP58	TMCC3(113771),KRT19P2(69819)	+/.	./.	chr10:104396403	chr12:94764328	intron	intergenic	translocation	0	0	0	214	21	low	.	.	.	.	.	ENSG00000120051.15	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	chr11:88092327	chr11:88092445	intron	intron	duplication	0	0	0	783	712	low	.	.	.	.	.	ENSG00000255102.1	ENSG00000255102.1	.	.	upstream	downstream	same_gene	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392887	chr11:88092437	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	duplicates	.	.	.
FREM1	FREM1	-/.	-/.	chr9:14774514	chr9:14774528	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000164946.20	ENSG00000164946.20	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	AP005436.1	-/.	-/.	chr1:90392887	chr11:88092439	intron	intron	translocation/3'-3'	0	0	0	334	838	low	.	.	.	.	.	ENSG00000287372.1	ENSG00000255102.1	.	.	downstream	downstream	duplicates	.	.	.
CFAP58	LINC02620	+/.	-/.	chr10:104396372	chr10:104479897	intron	intron	duplication/3'-3'	0	0	0	217	988	low	.	.	.	.	.	ENSG00000120051.15	ENSG00000225768.1	.	.	upstream	downstream	mismatches	.	.	.
PREPL	ZC2HC1C	-/.	+/.	chr2:44361340	chr14:75068465	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000138078.16	ENSG00000119703.15	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01793	LINC01793	+/.	+/.	chr2:59267325	chr2:59267334	intron	intron	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	ENSG00000222030.1	ENSG00000222030.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01793	AC007100.1	+/.	-/.	chr2:59267325	chr2:59267334	intron	intron	duplication/3'-3'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000222030.1	ENSG00000271955.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
CTNND2	TTLL1	-/.	-/.	chr5:11817321	chr22:43079835	intron	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	ENSG00000169862.19	ENSG00000100271.17	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007100.1	LINC01793	-/.	+/.	chr2:59267325	chr2:59267334	intron	intron	duplication/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000271955.2	ENSG00000222030.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP10	ARHGAP10	+/.	+/.	chr4:147798725	chr4:147798738	intron	intron	duplication/ITD	0	0	0	26	0	low	.	.	.	.	.	ENSG00000071205.12	ENSG00000071205.12	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC007100.1	AC007100.1	-/.	-/.	chr2:59267325	chr2:59267334	intron	intron	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	ENSG00000271955.2	ENSG00000271955.2	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC019257.1	.	-/-	./-	chr8:1973463	KI270748.1:25791	exon	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000253764.3	.	.	.	upstream	downstream	uninteresting_contigs(1)	.	.	.
FXNP1(22774),NRXN3(87321)	TEX28P1	./.	-/.	chr14:78083052	chrX:154202858	intergenic	intron	translocation	0	0	0	640	8	low	.	.	.	.	.	.	ENSG00000274962.1	.	.	downstream	downstream	low_entropy	.	.	.
AC007100.1	AC007179.2	-/.	-/.	chr2:59267325	chr2:59267334	intron	intron	duplication	0	0	0	2	1	low	.	.	.	.	.	ENSG00000271955.2	ENSG00000233891.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
.	.	./.	./.	GL000220.1:116391	GL000220.1:160360	intergenic	intergenic	inversion	0	0	0	.	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	FER1L6-AS2(516),AC090921.1(20633)	+/.	./.	chr2:32916556	chr8:124172038	intron	intergenic	translocation	0	0	0	1606	2	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	downstream	mismatches	.	.	.
PDE1C	PDE1C	-/.	-/.	chr7:32297998	chr7:32298013	intron	intron	duplication/ITD	0	0	0	72	25	low	.	.	.	.	.	ENSG00000154678.18	ENSG00000154678.18	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	GL000220.1:158434	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
SH3KBP1	SH3KBP1	-/.	-/.	chrX:19760027	chrX:19760084	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000147010.18	ENSG00000147010.18	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	chr8:22396416	chr8:22396509	intron	intron	duplication/ITD	0	0	0	0	71	low	.	.	.	.	.	ENSG00000104635.15	ENSG00000104635.15	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
AC007179.2	AC007179.2	-/.	-/.	chr2:59267325	chr2:59267334	intron	intron	duplication/ITD	0	0	0	2	1	low	.	.	.	.	.	ENSG00000233891.8	ENSG00000233891.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
ALK	AC106870.3	-/.	-/.	chr2:29889686	chr2:29889745	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000171094.18	ENSG00000288553.1	.	.	upstream	downstream	low_entropy(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3846),GPN2(7830)	./.	./.	chr1:26868243	chr1:26868302	intergenic	intergenic	duplication/ITD	0	0	0	236	235	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC008505.1(64864),LINC02163(123579)	AC008505.1(64923),LINC02163(123520)	./.	./.	chr5:103956268	chr5:103956327	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	chr2:32916556	chr21:8441951	intron	intron	translocation	0	0	0	1606	47	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000280441.3	.	.	downstream	upstream	mismatches	.	.	.
MAP4K4	MAP4K4	+/.	+/.	chr2:101785687	chr2:101785786	intron	intron	duplication/ITD	0	0	0	736	710	low	.	.	.	.	.	ENSG00000071054.16	ENSG00000071054.16	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC009242.1	KLHL29	-/.	+/.	chr2:23670912	chr2:23670981	intron	intron	duplication/5'-5'	0	0	0	25	25	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000119771.15	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02034(6478),AC084035.1(24269),TPRA1(24269)	OCA2	./.	-/.	chr3:127546963	chr15:27774285	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000104044.16	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009242.1	AC009242.1	-/.	-/.	chr2:23670912	chr2:23670981	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000283031.2	ENSG00000283031.2	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU7-29P(10972),AL627313.1(26973)	.	./.	./.	chr1:26613404	GL000220.1:158121	intergenic	intergenic	translocation	0	0	0	7	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
FLT1	FOXA3(2577),IRF2BP1(7234)	-/.	./.	chr13:28494947	chr19:45876374	5'UTR	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000102755.12	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001823.1(3432),ELMOD1(756)	AP001823.1(3531),ELMOD1(657)	./.	./.	chr11:107590335	chr11:107590434	intergenic	intergenic	duplication/ITD	0	0	0	683	646	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AP001823.1(3436),ELMOD1(752)	AP001823.1(3535),ELMOD1(653)	./.	./.	chr11:107590339	chr11:107590438	intergenic	intergenic	duplication/ITD	0	0	0	683	646	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
PRIMA1	FP236383.3	-/.	+/.	chr14:93720763	chr21:8442063	3'UTR	intron	translocation/3'-3'	0	0	0	0	35	low	.	.	.	.	.	ENSG00000175785.13	ENSG00000280441.3	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797742	chr17:57797751	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627095.1(5384),ZNF669(8511)	AL627095.1(5450),ZNF669(8445)	./.	./.	chr1:247091451	chr1:247091517	intergenic	intergenic	duplication/ITD	0	0	0	99	99	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
NOTCH3	NOTCH3	-/.	-/.	chr19:15169183	chr19:15169198	intron	intron	duplication/ITD	0	0	0	18	0	low	.	.	.	.	.	ENSG00000074181.9	ENSG00000074181.9	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
FAM222A	KCTD15(71704),AC008556.1(18885)	+/.	./.	chr12:109716200	chr19:33887467	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000139438.6	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LARP4	LARP4	+/.	+/.	chr12:50446352	chr12:50446361	intron	intron	duplication/ITD	0	0	0	86	70	low	.	.	.	.	.	ENSG00000161813.22	ENSG00000161813.22	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GRM7	AC078778.1	+/.	+/.	chr3:7300456	chr12:54304542	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196277.16	ENSG00000258344.1	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAJC1	DNAJC1	-/.	-/.	chr10:21813148	chr10:21813165	intron	intron	duplication/ITD	0	0	0	20	19	low	.	.	.	.	.	ENSG00000136770.11	ENSG00000136770.11	.	.	upstream	downstream	duplicates(8),low_entropy(3)	.	.	.
CDADC1	CDADC1	+/.	+/.	chr13:49275721	chr13:49275787	intron	intron	duplication/ITD	0	0	0	271	271	low	.	.	.	.	.	ENSG00000102543.14	ENSG00000102543.14	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	DLG2	./.	-/.	chr3:95431525	chr11:85484188	intergenic	intron	translocation	0	0	0	5	62	low	.	.	.	.	.	.	ENSG00000150672.18	.	.	downstream	upstream	mismatches(1)	.	.	.
FH(8961),KMO(3418)	FH(9023),KMO(3356)	./.	./.	chr1:241528716	chr1:241528778	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
RNU1-154P(714),AC239860.2(27391)	RNU1-154P(725),AC239860.2(27380)	./.	./.	chr1:145432407	chr1:145432418	intergenic	intergenic	duplication/ITD	0	0	0	188	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	chr10:104479801	chr10:104479906	intron	intron	duplication	0	0	0	984	855	low	.	.	.	.	.	ENSG00000225768.1	ENSG00000225768.1	.	.	upstream	downstream	duplicates	.	.	.
AC015845.2	AC015845.2	-/.	-/.	chr17:57797740	chr17:57797749	intron	intron	duplication/ITD	0	0	0	32	21	low	.	.	.	.	.	ENSG00000265542.5	ENSG00000265542.5	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
GPC3	GPC3	-/.	-/.	chrX:133661556	chrX:133661626	intron	intron	duplication/ITD	0	0	0	190	195	low	.	.	.	.	.	ENSG00000147257.15	ENSG00000147257.15	.	.	upstream	downstream	duplicates(5),low_entropy(11)	.	.	.
HIPK2	HIPK2	-/.	-/.	chr7:139729319	chr7:139729378	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000064393.16	ENSG00000064393.16	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL358292.1(65136),AL352955.1(196842)	AL358292.1(65178),AL352955.1(196800)	./.	./.	chr14:87054261	chr14:87054303	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01278	LINC01278	-/.	-/.	chrX:63236032	chrX:63236041	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000235437.8	ENSG00000235437.8	.	.	upstream	downstream	low_entropy(1)	.	.	.
ATP2B2	AL136115.3(9930),KHDRBS1(16904)	-/-	./+	chr3:10449762	chr1:31996964	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157087.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	chr7:139729319	chr7:139729367	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000064393.16	ENSG00000064393.16	.	.	upstream	downstream	duplicates(1)	.	.	.
NGB	NGB	-/.	-/.	chr14:77269679	chr14:77269777	intron	intron	duplication/ITD	0	0	0	11	79	low	.	.	.	.	.	ENSG00000165553.4	ENSG00000165553.4	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	ALKBH7	+/.	+/.	chr2:32916551	chr19:6373169	intron	intron	translocation/5'-5'	0	0	0	1606	1	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000125652.8	.	.	downstream	downstream	mismatches	.	.	.
SPDYE10P(12656),GTF2IP4(31142)	.	./.	./.	chr7:73123796	KI270733.1:148270	intergenic	intergenic	translocation	0	0	0	5	.	low	.	.	.	.	.	.	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	chr15:81565285	chr15:81565344	intron	intron	duplication/ITD	0	0	0	216	216	low	.	.	.	.	.	ENSG00000259543.1	ENSG00000259543.1	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC087854.1	FP236383.3	-/.	+/.	chr8:22486063	chr21:8420286	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251034.2	ENSG00000280441.3	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAJC1	.	-/.	./.	chr10:21813183	KI270733.1:148270	intron	intergenic	translocation	0	0	0	20	.	low	.	.	.	.	.	ENSG00000136770.11	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
AC004825.1(21709),AC004825.2(25519)	.	./.	./.	chr14:70881138	KI270733.1:148270	intergenic	intergenic	translocation	0	0	0	8	.	low	.	.	.	.	.	.	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
NR5A1	AL353586.1	-/-	+/+	chr9:124507409	chr10:12889013	5'UTR	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000136931.10	ENSG00000285520.1	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02346	.	+/.	./.	chr15:26000089	KI270733.1:148270	intron	intergenic	translocation	0	0	0	4	.	low	.	.	.	.	.	ENSG00000206187.4	.	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
MIR31HG	MIR31HG	-/.	-/.	chr9:21483300	chr9:21483337	intron	intron	duplication/ITD	0	0	0	36	36	low	.	.	.	.	.	ENSG00000171889.5	ENSG00000171889.5	.	.	upstream	downstream	duplicates(6)	.	.	.
SCFD2	SCFD2	-/.	-/.	chr4:53007306	chr4:53007315	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000184178.16	ENSG00000184178.16	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
NRG1	NCOA5LP(16498),CNEP1R1(39182)	+/.	./.	chr8:32786127	chr16:49985228	intron	intergenic	translocation	0	0	0	6	20	low	.	.	.	.	.	ENSG00000157168.20	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL590623.1(3090648),KSR1P1(275554)	.	./.	./.	chr10:41873756	KI270737.1:31063	intergenic	intergenic	translocation	0	0	0	1	.	low	.	.	.	.	.	.	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GDF6	TRERF1	-/-	-/-	chr8:96144245	chr6:42262587	3'UTR	intron	translocation	0	0	0	0	2501	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|C2H2-type_zinc_finger(66%),ELM2_domain(100%)	.	.	ENSG00000156466.10	ENSG00000124496.12	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	BCL3	+/.	+/.	chr2:32916556	chr19:44749297	intron	intron	translocation/5'-5'	0	0	0	1606	7	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000069399.15	.	.	downstream	downstream	mismatches	.	.	.
AC025580.2	AC025580.2	+/.	+/.	chr15:45462336	chr15:45462434	intron	intron	duplication/ITD	0	0	0	0	4	low	.	.	.	.	.	ENSG00000259354.5	ENSG00000259354.5	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
Metazoa_SRP(52184),PLCB4(17479)	U6(212901),ABCD1P4(32921)	./.	./.	chr20:9051284	chr22:16354773	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC006196.1(62146),LINC01790(4275)	AC006196.1(62159),LINC01790(4262)	./.	./.	chr2:194726320	chr2:194726333	intergenic	intergenic	duplication/ITD	0	0	0	3	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
MIR29B2CHG	MIR29B2CHG	-/.	-/.	chr1:207824032	chr1:207824047	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000203709.12	ENSG00000203709.12	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC116359.1(16745),AC094105.1(25727)	.	./.	./.	chr5:2805294	KI270733.1:150333	intergenic	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	.	.	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01471	LINC01471	-/.	-/.	chr3:127481428	chr3:127481441	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000239921.6	ENSG00000239921.6	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
NXF2(27560),NXF2B(6114)	NXF2(27658),NXF2B(6016)	./.	./.	chrX:102354282	chrX:102354380	intergenic	intergenic	duplication/ITD	0	0	0	31	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC002463.1	5_8S_rRNA(1693),FP236383.3(122017)	+/.	./.	chr7:112751479	chr21:8258626	intron	intergenic	translocation	0	0	0	22	10	low	.	.	.	.	.	ENSG00000223646.2	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902250	chr4:94902265	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(6),merge_adjacent	.	.	.
INO80C(70102),GALNT1(13036)	INO80C(70168),GALNT1(12970)	./.	./.	chr18:35568081	chr18:35568147	intergenic	intergenic	duplication/ITD	0	0	0	35	35	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(24),low_entropy(9)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51933),RBMY2WP(38059)	./.	./.	chrY:22724736	chrY:22724792	intergenic	intergenic	duplication/ITD	0	0	0	1708	1708	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC006037.2(18450),AC006037.1(6141)	AL355674.1(96196),RORB-AS1(4777)	./.	./.	chr2:234102940	chr9:74480774	intergenic	intergenic	translocation	0	0	0	14	89	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	chr4:94902254	chr4:94902265	intron	intron	duplication/ITD	0	0	0	1847	1844	low	.	.	.	.	.	ENSG00000138696.11	ENSG00000138696.11	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC00486	.	+/.	./.	chr2:32916556	KI270733.1:176291	intron	intergenic	translocation	0	0	0	1606	.	low	.	.	.	.	.	ENSG00000230876.8	.	.	.	downstream	upstream	duplicates	.	.	.
AP001823.1(3440),ELMOD1(748)	AC078909.2(1369),Metazoa_SRP(105264)	./.	./.	chr11:107590343	chr15:37111353	intergenic	intergenic	translocation	0	0	0	685	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL358053.1(206654),AL591644.1(221027)	BPIFB1	./.	+/.	chr9:1756757	chr20:33279912	intergenic	intron	translocation	0	0	0	40	1	low	.	.	.	.	.	.	ENSG00000125999.11	.	.	upstream	downstream	mismatches(1)	.	.	.
HTR1E(43219),AL138827.1(10258)	MMP2-AS1	./.	-/.	chr6:87059898	chr16:55433378	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000260135.7	.	.	downstream	downstream	mismatches(1)	.	.	.
AL390763.1(199665),LINC02667(392931)	CDH4	./.	+/.	chr10:128519879	chr20:61562942	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000179242.16	.	.	upstream	upstream	mismatches(1)	.	.	.
SMURF2	SMURF2	-/.	-/.	chr17:64631274	chr17:64631327	intron	intron	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	ENSG00000108854.16	ENSG00000108854.16	.	.	upstream	downstream	duplicates(6),low_entropy(4)	.	.	.
RMDN2-AS1	MMP2-AS1	-/.	-/.	chr2:38020787	chr16:55433378	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235848.4	ENSG00000260135.7	.	.	upstream	downstream	mismatches(1)	.	.	.
MYO3B	MMP2-AS1	+/.	-/.	chr2:170218213	chr16:55433378	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000071909.19	ENSG00000260135.7	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF462	AC087636.1	+/.	-/.	chr9:106864116	chr15:95080454	intron	intron	translocation/5'-5'	0	0	0	87	0	low	.	.	.	.	.	ENSG00000148143.13	ENSG00000258773.2	.	.	downstream	upstream	mismatches(1)	.	.	.
MMP2	WNK4	+/.	+/.	chr16:55433378	chr17:42788481	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087245.13	ENSG00000126562.17	.	.	downstream	downstream	mismatches(1)	.	.	.
RASSF5	MMP2	+/.	+/.	chr1:206557110	chr16:55433378	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000266094.8	ENSG00000087245.13	.	.	downstream	downstream	mismatches(1)	.	.	.
AC020741.1	NKILA(41152),AL162291.1(141462)	-/-	./-	chr4:61428174	chr20:57753932	exon	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000205682.2	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RASSF5	MMP2-AS1	+/.	-/.	chr1:206557110	chr16:55433378	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000266094.8	ENSG00000260135.7	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	chr3:64736204	chr3:64736262	intron	intron	duplication/ITD	0	0	0	974	974	low	.	.	.	.	.	ENSG00000241684.6	ENSG00000241684.6	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SHISA9	SHISA9	+/.	+/.	chr16:12943346	chr16:12943355	intron	intron	duplication/ITD	0	0	0	54	51	low	.	.	.	.	.	ENSG00000237515.9	ENSG00000237515.9	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MMP2	GPC4	+/.	-/.	chr16:55433378	chrX:133305986	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087245.13	ENSG00000076716.9	.	.	downstream	downstream	mismatches(1)	.	.	.
AL358053.1(206652),AL591644.1(221029)	AL358053.1(206661),AL591644.1(221020)	./.	./.	chr9:1756755	chr9:1756764	intergenic	intergenic	duplication/ITD	0	0	0	40	38	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MMP2-AS1	GPC4	-/.	-/.	chr16:55433378	chrX:133305986	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260135.7	ENSG00000076716.9	.	.	downstream	downstream	mismatches(1)	.	.	.
AC113208.3(5142),AC068338.1(9256)	AC113208.3(5153),AC068338.1(9245)	./.	./.	chr15:75239976	chr15:75239987	intergenic	intergenic	duplication/ITD	0	0	0	13	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
UVSSA	.	+/.	./.	chr4:1346670	KI270733.1:137899	intron	intergenic	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163945.19	.	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	OTX2P1(77475),PCSK5(88594)	./.	./.	chr7:39505425	chr9:75802050	intergenic	intergenic	translocation	0	0	0	23	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
AC046134.2	AC046134.2	+/.	+/.	chr3:139428079	chr3:139428142	intron	intron	duplication/ITD	0	0	0	3	2	low	.	.	.	.	.	ENSG00000248932.6	ENSG00000248932.6	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	chr2:32916550	chr2:32916556	intron	intron	inversion/3'-3'	0	0	0	1606	1606	low	.	.	.	.	.	ENSG00000230876.8	ENSG00000230876.8	.	.	downstream	downstream	hairpin	.	.	.
OTX2P1(77477),PCSK5(88592)	Z83818.2	./.	-/.	chr9:75802052	chrX:87716930	intergenic	intron	translocation	0	0	0	24	14	low	.	.	.	.	.	.	ENSG00000282914.1	.	.	downstream	upstream	mismatches(1)	.	.	.
NRXN3	NRXN3	+/.	+/.	chr14:79486914	chr14:79486929	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000021645.20	ENSG00000021645.20	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
AC100860.1(12886),DENND3(43796)	AC100860.1(12920),DENND3(43762)	./.	./.	chr8:141073482	chr8:141073516	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3504),ELMOD1(684)	./.	./.	chr11:107590331	chr11:107590407	intergenic	intergenic	duplication/ITD	0	0	0	683	685	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.