#==================================================
#All numbers are READ count
#==================================================

Total records:                          225404

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        167650
Unmapped reads:                         30963
mapq < mapq_cut (non-unique):           19422

mapq >= mapq_cut (unique):              7369
Read-1:                                 3722
Read-2:                                 3647
Reads map to '+':                       3736
Reads map to '-':                       3633
Non-splice reads:                       7262
Splice reads:                           107
Reads mapped in proper pairs:           6668
Proper-paired reads map to different chrom:0