Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/8b447bb907003529e096d5a5e447a6/659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/c718473c17a6b3c7965d41fdd26883/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/c718473c17a6b3c7965d41fdd26883/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293658557
unpaired = 4077375
MERGED PAIRED END READS = 293658557
MATES PROCESSED = 591394489
TOTAL READS     = 297735932
DISTINCT READS  = 1.0727e+08
DISTINCT COUNTS = 821
MAX COUNT       = 743179
COUNTS OF 1     = 4.27637e+07
MAX TERMS       = 100
OBSERVED COUNTS (743180)
1	42763684
2	25727914
3	15343912
4	8894809
5	5138184
6	3024709
7	1839610
8	1164104
9	766489
10	526679
11	376070
12	277019
13	212487
14	165572
15	131706
16	107291
17	88725
18	74705
19	63092
20	54017
21	46485
22	40376
23	34969
24	31341
25	27590
26	24759
27	22166
28	19858
29	18049
30	16262
31	15018
32	13427
33	12256
34	11481
35	10121
36	9743
37	9073
38	8267
39	7644
40	7136
41	6583
42	6275
43	5748
44	5430
45	5069
46	4676
47	4664
48	4168
49	3869
50	3727
51	3465
52	3389
53	3112
54	3025
55	2778
56	2690
57	2470
58	2430
59	2380
60	2124
61	2088
62	2008
63	1963
64	1852
65	1732
66	1669
67	1618
68	1553
69	1426
70	1404
71	1386
72	1337
73	1244
74	1221
75	1097
76	1130
77	998
78	998
79	958
80	977
81	915
82	860
83	806
84	818
85	768
86	789
87	752
88	709
89	708
90	663
91	630
92	677
93	584
94	575
95	552
96	554
97	494
98	539
99	510
100	464
101	493
102	472
103	393
104	401
105	419
106	406
107	436
108	414
109	378
110	356
111	327
112	337
113	347
114	304
115	324
116	315
117	323
118	324
119	299
120	267
121	262
122	252
123	253
124	263
125	232
126	263
127	239
128	209
129	233
130	241
131	224
132	203
133	183
134	194
135	216
136	186
137	184
138	183
139	167
140	171
141	192
142	154
143	148
144	161
145	152
146	157
147	163
148	162
149	165
150	154
151	129
152	142
153	144
154	126
155	107
156	141
157	92
158	117
159	125
160	100
161	114
162	107
163	112
164	94
165	119
166	94
167	101
168	111
169	100
170	74
171	112
172	78
173	95
174	88
175	86
176	87
177	88
178	74
179	81
180	81
181	83
182	78
183	84
184	78
185	66
186	70
187	74
188	85
189	73
190	63
191	65
192	57
193	52
194	59
195	66
196	72
197	65
198	50
199	51
200	57
201	60
202	43
203	53
204	57
205	58
206	46
207	59
208	56
209	54
210	47
211	41
212	48
213	50
214	52
215	57
216	52
217	47
218	40
219	34
220	46
221	34
222	48
223	47
224	34
225	33
226	36
227	36
228	46
229	31
230	41
231	42
232	39
233	35
234	38
235	36
236	43
237	27
238	31
239	35
240	31
241	30
242	35
243	34
244	42
245	22
246	27
247	34
248	33
249	23
250	33
251	36
252	24
253	21
254	24
255	26
256	31
257	22
258	18
259	24
260	32
261	34
262	21
263	16
264	20
265	21
266	13
267	20
268	21
269	18
270	27
271	19
272	25
273	22
274	28
275	18
276	10
277	21
278	19
279	18
280	28
281	28
282	20
283	17
284	26
285	19
286	23
287	21
288	15
289	21
290	17
291	22
292	10
293	8
294	15
295	19
296	16
297	15
298	13
299	14
300	21
301	15
302	21
303	13
304	18
305	17
306	18
307	15
308	18
309	12
310	9
311	18
312	12
313	14
314	18
315	25
316	13
317	17
318	9
319	13
320	8
321	12
322	14
323	12
324	13
325	11
326	11
327	12
328	10
329	8
330	7
331	11
332	15
333	11
334	12
335	15
336	23
337	7
338	9
339	17
340	10
341	10
342	12
343	11
344	5
345	6
346	5
347	9
348	6
349	5
350	11
351	8
352	11
353	7
354	8
355	4
356	8
357	13
358	9
359	3
360	12
361	8
362	10
363	8
364	12
365	6
366	5
367	11
368	9
369	7
370	8
371	12
372	6
373	7
374	5
375	4
376	6
377	5
378	3
379	8
380	8
381	14
382	9
383	9
384	5
385	4
386	4
387	4
388	3
389	10
390	9
391	6
392	8
393	7
394	9
395	4
396	3
397	5
398	6
399	3
400	4
401	6
402	9
403	6
404	6
405	9
406	8
407	5
408	8
409	4
410	8
411	4
412	4
413	3
414	1
415	8
416	9
417	6
418	2
419	5
420	5
421	4
422	3
423	2
424	6
425	4
426	2
427	4
428	3
429	4
430	4
431	3
432	7
433	2
434	3
435	4
436	2
437	6
438	8
439	2
440	6
441	4
442	5
443	2
444	5
445	4
446	3
447	5
448	6
449	3
450	3
451	2
452	5
453	1
454	5
455	1
456	4
457	3
458	1
459	5
460	3
461	1
462	3
463	5
464	4
465	1
466	6
467	2
468	2
469	1
470	2
471	2
472	4
474	6
475	6
476	4
477	2
478	3
479	5
480	1
481	2
482	3
483	3
484	2
485	4
486	4
487	1
488	1
489	3
490	2
491	9
492	2
493	4
494	5
495	3
496	3
497	1
498	6
499	3
501	5
502	5
503	3
505	2
506	1
508	2
509	2
510	1
511	2
512	3
513	3
514	3
515	3
516	1
517	1
518	4
519	2
520	4
521	1
522	1
523	1
524	2
525	1
526	1
527	1
528	3
529	3
530	1
531	4
532	3
535	3
536	1
537	4
538	1
539	5
540	3
542	3
543	5
544	3
545	4
546	2
547	4
548	1
549	3
550	2
552	2
553	2
554	4
555	4
556	4
557	3
558	2
559	2
560	1
561	3
563	3
564	3
565	2
566	1
567	2
568	2
569	2
570	1
571	3
572	2
573	1
575	1
576	2
577	1
578	2
579	3
580	1
581	2
582	1
583	4
586	1
587	2
588	3
592	2
594	2
597	1
598	2
599	2
600	2
604	4
605	3
607	2
608	3
612	1
614	1
615	1
616	2
618	1
620	3
621	1
622	2
624	4
625	2
626	1
627	1
628	1
630	1
632	1
634	1
635	2
636	3
637	4
639	2
642	3
644	1
645	2
647	2
649	2
650	1
651	1
653	2
654	1
655	2
656	1
657	3
658	2
659	2
663	1
664	1
666	1
668	1
671	2
672	1
673	3
675	1
676	1
677	2
678	1
681	2
682	1
684	1
686	1
687	4
688	1
694	1
695	1
698	1
701	4
702	1
703	2
704	1
705	2
707	1
708	1
710	2
711	1
714	1
718	1
719	2
724	1
726	1
730	2
733	1
735	1
736	3
737	1
743	1
744	2
747	1
748	1
749	1
751	1
752	1
754	2
755	1
756	2
757	1
758	1
759	1
760	1
764	1
765	1
766	2
767	1
768	1
769	1
772	1
777	1
779	1
780	1
785	2
788	1
789	1
790	1
792	1
793	1
798	1
799	1
802	2
804	2
807	1
809	1
813	1
820	1
827	1
831	1
840	1
841	2
843	1
844	1
845	1
847	1
849	1
850	3
851	1
854	2
855	1
860	1
863	1
865	1
873	1
875	1
878	2
879	1
881	1
883	1
884	1
889	1
891	2
897	1
898	1
900	1
901	1
909	1
910	2
918	1
921	1
924	2
927	1
929	1
936	1
939	1
944	1
945	1
946	1
947	1
949	1
951	1
952	2
954	1
955	1
957	2
963	1
964	2
965	1
970	1
972	3
986	2
987	2
991	1
997	1
999	1
1016	1
1019	1
1028	1
1033	1
1038	2
1060	1
1067	1
1069	1
1073	1
1077	1
1079	1
1091	1
1093	1
1123	1
1124	1
1131	1
1132	1
1134	1
1137	1
1152	1
1153	1
1168	1
1170	1
1183	1
1193	1
1194	1
1236	1
1242	1
1250	1
1269	1
1323	1
1345	1
1349	1
1364	1
1375	1
1416	1
1450	1
1467	1
1476	1
1477	1
1478	1
1485	2
1547	1
1579	1
1642	1
1723	1
1745	1
1768	1
1776	1
1793	1
1853	1
2004	1
2032	1
2327	1
2426	1
2534	1
2814	1
2984	1
3122	1
4772	1
6411	1
8527	1
9691	1
10322	1
45999	1
743179	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
................................................................._......
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]