Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/9718430fe20a6a2af4bd92330716eb/659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/c1ff7e751e5db1a1d972d0dd60c0d3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/c1ff7e751e5db1a1d972d0dd60c0d3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/3aaf6df0c0e98be6b29aefdbd497da/659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory