File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/851b38565decfc82f615d4f9d67f3b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:57:28
                             Started mapping on |	Jun 08 10:04:09
                                    Finished on |	Jun 08 11:14:54
       Mapping speed, Million of reads per hour |	245.44

                          Number of input reads |	289417500
                      Average input read length |	245
                                    UNIQUE READS:
                   Uniquely mapped reads number |	275754679
                        Uniquely mapped reads % |	95.28%
                          Average mapped length |	244.86
                       Number of splices: Total |	272062932
            Number of splices: Annotated (sjdb) |	267074502
                       Number of splices: GT/AG |	268162858
                       Number of splices: GC/AG |	1857608
                       Number of splices: AT/AC |	206375
               Number of splices: Non-canonical |	1836091
                      Mismatch rate per base, % |	0.28%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.19
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9958056
             % of reads mapped to multiple loci |	3.44%
        Number of reads mapped to too many loci |	989499
             % of reads mapped to too many loci |	0.34%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2238053
                 % of reads unmapped: too short |	0.77%
                Number of reads unmapped: other |	477213
                     % of reads unmapped: other |	0.16%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%