.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES (tih_rna_sample_00136_B23WHTKLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/883c0f0f802fae2a8d7f2a9bcaf8c9/.command.sh
Size: 415 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES (tih_rna_sample_00136_B23WHTKLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
# Extract VAF features from VCF
extract_vaf_features.py \
    "tih_rna_sample_00136_B23WHTKLT4_2.vcf" \
    --output "tih_rna_sample_00136_B23WHTKLT4_2.features.csv"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES":
    python: $(python3 --version | sed 's/Python //g')
    extract_vaf_features: 1.0.0
END_VERSIONS