[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	199734407
Known Splicing Events:	197481766
Partial Novel Splicing Events:	1131170
Novel Splicing Events:	1039504
Filtered Splicing Events:	81967

Total splicing  Junctions:	321080
Known Splicing Junctions:	218780
Partial Novel Splicing Junctions:	59074
Novel Splicing Junctions:	43226

===================================================================
Create BED file ...
Create Interact file ...