File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/f0c99bfe8fba47894e4f1071953046/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_bGc-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/8f45fd2eb51d82dd397ffdc1de7cdc/659_bGc-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/e640dac831905516eb931426ebee99/659_bGc-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/f0c99bfe8fba47894e4f1071953046/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/f0c99bfe8fba47894e4f1071953046/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 199734407
[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	199734407
Known Splicing Events:	197481766
Partial Novel Splicing Events:	1131170
Novel Splicing Events:	1039504
Filtered Splicing Events:	81967

Total splicing  Junctions:	321080
Known Splicing Junctions:	218780
Partial Novel Splicing Junctions:	59074
Novel Splicing Junctions:	43226

===================================================================
Create BED file ...
Create Interact file ...