Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/ff1b3168aa1dfaa467c7bdf6fe78e1/tih_rna_sample_00164_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/9cccad3b969b503575de4432aefc5d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/9cccad3b969b503575de4432aefc5d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/690c940fc78d72d5e9bce24b1f592e/tih_rna_sample_00164_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory