[W::hts_idx_load3] The index file is older than the data file: 659_c95-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	350166725
Known Splicing Events:	345234961
Partial Novel Splicing Events:	1945877
Novel Splicing Events:	2863026
Filtered Splicing Events:	122861

Total splicing  Junctions:	553111
Known Splicing Junctions:	271782
Partial Novel Splicing Junctions:	156383
Novel Splicing Junctions:	124946

===================================================================
Create BED file ...
Create Interact file ...