Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/582a91d45372dfce58f53ca1da1692/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/582a91d45372dfce58f53ca1da1692/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/75c67cbabe686568cf36118f80926b/659_c95-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/efa3af46df2de4cdb0bc3e1db16b14/659_c95-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 350166725
[W::hts_idx_load3] The index file is older than the data file: 659_c95-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	350166725
Known Splicing Events:	345234961
Partial Novel Splicing Events:	1945877
Novel Splicing Events:	2863026
Filtered Splicing Events:	122861

Total splicing  Junctions:	553111
Known Splicing Junctions:	271782
Partial Novel Splicing Junctions:	156383
Novel Splicing Junctions:	124946

===================================================================
Create BED file ...
Create Interact file ...