File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/6e1e9c3c9e382873396a6c787d8d10/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_cRB-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/6e1e9c3c9e382873396a6c787d8d10/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/6e1e9c3c9e382873396a6c787d8d10/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/35d06a8d0f7af0b007c1adced15979/659_cRB-T1-TRNA-1_B23WHTKLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/4a094192f1d7c58bbe619cd50fd315/659_cRB-T1-TRNA-1_B23WHTKLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_cRB-T1-TRNA-1_B23WHTKLT4_1/abundance.h5
Successfully converted 659_cRB-T1-TRNA-1_B23WHTKLT4_1/abundance.h5 to 659_cRB-T1-TRNA-1_B23WHTKLT4_1_kallisto_mqc.tsv
  Sample: 659_cRB-T1-TRNA-1_B23WHTKLT4_1
  Mean Fragment Length: 120.8 bp
  Median Fragment Length: 114.0 bp
  pct_mito_est_counts: 0.008%
  pct_ribo_est_counts: 1.075%
  pct_hk_est_counts: 0.617%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.016%
  pct_ribo_tpm: 3.502%
  pct_hk_tpm: 0.975%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.127%