File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fdd088f9271ec2a52e77ee2570d9d2/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:40:54
                             Started mapping on |	Jun 08 09:48:16
                                    Finished on |	Jun 08 10:37:47
       Mapping speed, Million of reads per hour |	300.73

                          Number of input reads |	248185552
                      Average input read length |	240
                                    UNIQUE READS:
                   Uniquely mapped reads number |	240270859
                        Uniquely mapped reads % |	96.81%
                          Average mapped length |	239.88
                       Number of splices: Total |	252260734
            Number of splices: Annotated (sjdb) |	248485810
                       Number of splices: GT/AG |	248685819
                       Number of splices: GC/AG |	1787754
                       Number of splices: AT/AC |	179152
               Number of splices: Non-canonical |	1608009
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.05%
                        Deletion average length |	2.25
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.60
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5788969
             % of reads mapped to multiple loci |	2.33%
        Number of reads mapped to too many loci |	194368
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1723154
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	208202
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%