File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/0038b49963d6691d86f797ca4234b1/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:55:08
                             Started mapping on |	Jun 08 10:01:58
                                    Finished on |	Jun 08 11:14:45
       Mapping speed, Million of reads per hour |	243.50

                          Number of input reads |	295379648
                      Average input read length |	258
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279973091
                        Uniquely mapped reads % |	94.78%
                          Average mapped length |	257.29
                       Number of splices: Total |	308772399
            Number of splices: Annotated (sjdb) |	304482442
                       Number of splices: GT/AG |	305089129
                       Number of splices: GC/AG |	2166802
                       Number of splices: AT/AC |	262316
               Number of splices: Non-canonical |	1254152
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.55
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	12322167
             % of reads mapped to multiple loci |	4.17%
        Number of reads mapped to too many loci |	703222
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1980294
                 % of reads unmapped: too short |	0.67%
                Number of reads unmapped: other |	400874
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%