Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/8b447bb907003529e096d5a5e447a6/659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/e996bc2b9a71b78dfbca49f892795f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/50de7b524cd8de5d5626bf6ab3bf5c/659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/e996bc2b9a71b78dfbca49f892795f/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 362003735
[W::hts_idx_load3] The index file is older than the data file: 659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	362003735
Known Splicing Events:	358679131
Partial Novel Splicing Events:	1596050
Novel Splicing Events:	1591347
Filtered Splicing Events:	137207

Total splicing  Junctions:	544541
Known Splicing Junctions:	258058
Partial Novel Splicing Junctions:	142679
Novel Splicing Junctions:	143804

===================================================================
Create BED file ...
Create Interact file ...