Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00121_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00121_B23WHTKLT4_1.md.bam --METRICS_FILE tih_rna_sample_00121_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:01:17.107 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:01:17 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00121_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00121_B23WHTKLT4_1.md.bam --METRICS_FILE tih_rna_sample_00121_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:01:17 GMT 2026] Executing as ?@nf-ff20bfcf5bb26c812eb2df82ea1a9427-0fef8-cqcd2 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:01:17 MarkDuplicates Start of doWork freeMemory: 105130560; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:01:17 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:01:17 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,353,867
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 2744 as yet unmatched pairs. 997 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:2,562,878
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 3776 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:8,871,949
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 5869 as yet unmatched pairs. 296 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,996,166
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 7302 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:16,451,881
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 8717 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:19,378,542
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 10244 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,839,395
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 12945 as yet unmatched pairs. 1501 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:22,118,477
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 13074 as yet unmatched pairs. 39 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:25,242,574
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 14776 as yet unmatched pairs. 339 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:27,547,796
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 16302 as yet unmatched pairs. 426 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:31,585,228
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 17549 as yet unmatched pairs. 205 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:32,230,904
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 19260 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:35,189,351
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 21704 as yet unmatched pairs. 1082 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:36,307,132
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 22431 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:39,350,823
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 24659 as yet unmatched pairs. 886 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 3s. Last read position: chr1:40,078,578
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 26269 as yet unmatched pairs. 1247 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:43,313,327
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 26855 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:43,995,006
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 28634 as yet unmatched pairs. 341 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:46,184,246
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 30415 as yet unmatched pairs. 698 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:52,027,323
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 31807 as yet unmatched pairs. 425 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:55,092,869
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 33169 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:62,114,109
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 34865 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:75,734,808
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 36240 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:87,332,142
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 37668 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:94,897,685
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 39203 as yet unmatched pairs. 510 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:103,551,041
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 40277 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:109,272,348
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 42576 as yet unmatched pairs. 1063 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:112,659,767
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 43791 as yet unmatched pairs. 771 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:114,734,052
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 45901 as yet unmatched pairs. 1515 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:119,917,664
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 47433 as yet unmatched pairs. 1694 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:120,453,849
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 47252 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:145,957,710
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 48003 as yet unmatched pairs. 155 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:147,620,106
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 48720 as yet unmatched pairs. 243 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:149,077,232
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 49569 as yet unmatched pairs. 435 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:150,283,397
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 50038 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:150,994,632
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 51578 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:152,219,737
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 52915 as yet unmatched pairs. 125 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:154,173,055
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 56128 as yet unmatched pairs. 1941 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:154,988,747
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 55948 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:155,191,288
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 57304 as yet unmatched pairs. 598 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:155,751,783
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 58211 as yet unmatched pairs. 294 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:156,137,097
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 63988 as yet unmatched pairs. 4455 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:156,943,992
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 61421 as yet unmatched pairs. 264 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:160,348,999
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 62908 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:161,542,550
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 66965 as yet unmatched pairs. 2911 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:167,683,909
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 65651 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,515
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 67908 as yet unmatched pairs. 1242 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:179,094,116
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 68324 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:182,601,937
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 70173 as yet unmatched pairs. 611 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:186,317,506
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 71864 as yet unmatched pairs. 830 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:200,407,065
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 72738 as yet unmatched pairs. 393 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr1:202,729,888
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 73760 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:203,829,798
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 77243 as yet unmatched pairs. 2230 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr1:206,303,284
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 76705 as yet unmatched pairs. 335 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr1:211,304,083
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 78230 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:220,172,708
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 79382 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr1:224,401,056
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 81012 as yet unmatched pairs. 497 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr1:226,885,563
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 82118 as yet unmatched pairs. 243 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:229,654,247
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 83587 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr1:235,119,817
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 86474 as yet unmatched pairs. 1098 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 3s. Last read position: chr1:243,695,635
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 87637 as yet unmatched pairs. 887 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr1:246,759,085
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 88740 as yet unmatched pairs. 497 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 3s. Last read position: chr2:8,779,107
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 90219 as yet unmatched pairs. 89882 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:20,006,016
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 91663 as yet unmatched pairs. 91312 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:24,312,275
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 93078 as yet unmatched pairs. 92724 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:27,201,013
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 94896 as yet unmatched pairs. 94533 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:30,447,340
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 95811 as yet unmatched pairs. 95444 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,260
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 145158 as yet unmatched pairs. 94310 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 697233 as yet unmatched pairs. 70173 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 767159 as yet unmatched pairs. 67212 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:38,568,235
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 810877 as yet unmatched pairs. 64300 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:43,577,185
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 809686 as yet unmatched pairs. 63101 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:53,896,832
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 808378 as yet unmatched pairs. 61785 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:55,871,107
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 807252 as yet unmatched pairs. 60657 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:65,071,668
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 805254 as yet unmatched pairs. 58655 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:70,236,073
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 803929 as yet unmatched pairs. 57329 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:74,371,128
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 802956 as yet unmatched pairs. 56354 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:85,542,208
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 801349 as yet unmatched pairs. 54744 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:95,115,170
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 799912 as yet unmatched pairs. 53307 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:96,864,320
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 798421 as yet unmatched pairs. 51811 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:101,004,273
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 803136 as yet unmatched pairs. 56509 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:108,763,449
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 796607 as yet unmatched pairs. 49967 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:110,534,772
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 795188 as yet unmatched pairs. 48548 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:113,201,229
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 795239 as yet unmatched pairs. 48595 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:127,873,839
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 793281 as yet unmatched pairs. 46629 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:131,591,777
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 799145 as yet unmatched pairs. 52484 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:148,468,523
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 790940 as yet unmatched pairs. 44274 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:157,760,912
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 790266 as yet unmatched pairs. 43576 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:162,202,932
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 788948 as yet unmatched pairs. 42235 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:171,692,871
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 787754 as yet unmatched pairs. 41039 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:178,539,096
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 785993 as yet unmatched pairs. 39275 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:186,651,981
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 785152 as yet unmatched pairs. 38425 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr2:188,994,811
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 790748 as yet unmatched pairs. 44020 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr2:189,004,290
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 785686 as yet unmatched pairs. 38952 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr2:189,048,251
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 781799 as yet unmatched pairs. 35065 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:190,219,353
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 777917 as yet unmatched pairs. 31170 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:198,088,957
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 776528 as yet unmatched pairs. 29776 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr2:203,416,966
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 775361 as yet unmatched pairs. 28596 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr2:211,725,151
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 774631 as yet unmatched pairs. 27860 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr2:215,364,973
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 788901 as yet unmatched pairs. 42130 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,026
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 795895 as yet unmatched pairs. 49121 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,280
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 785651 as yet unmatched pairs. 38877 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr2:215,379,135
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 785784 as yet unmatched pairs. 39010 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,049
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 778766 as yet unmatched pairs. 31992 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr2:215,393,005
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 778270 as yet unmatched pairs. 31496 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr2:215,404,487
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 783015 as yet unmatched pairs. 36241 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr2:215,408,175
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 783697 as yet unmatched pairs. 36922 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr2:215,414,911
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 781198 as yet unmatched pairs. 34420 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,138
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 773115 as yet unmatched pairs. 26337 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr2:215,433,440
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 771198 as yet unmatched pairs. 24420 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr2:216,694,583
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 763916 as yet unmatched pairs. 17132 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr2:218,740,520
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 757837 as yet unmatched pairs. 11053 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr2:222,941,504
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 756056 as yet unmatched pairs. 9271 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr2:231,331,839
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 754682 as yet unmatched pairs. 7887 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr2:235,516,056
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 753786 as yet unmatched pairs. 6990 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr2:237,366,760
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 753048 as yet unmatched pairs. 6245 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr2:237,518,556
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 752545 as yet unmatched pairs. 5742 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr2:240,576,677
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 748937 as yet unmatched pairs. 2123 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr2:241,741,079
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 747716 as yet unmatched pairs. 894 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:9,838,085
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 745814 as yet unmatched pairs. 36711 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:13,614,137
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 745096 as yet unmatched pairs. 35982 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr3:25,624,349
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 743079 as yet unmatched pairs. 33944 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr3:37,275,752
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 741642 as yet unmatched pairs. 32503 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr3:41,236,650
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 740863 as yet unmatched pairs. 31715 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr3:47,097,992
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 738435 as yet unmatched pairs. 29278 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr3:48,568,514
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 737284 as yet unmatched pairs. 28123 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr3:49,125,281
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 735854 as yet unmatched pairs. 26690 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr3:50,238,121
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 734716 as yet unmatched pairs. 25547 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr3:52,488,082
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 732893 as yet unmatched pairs. 23715 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr3:57,583,897
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 731126 as yet unmatched pairs. 21935 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr3:69,047,941
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 729532 as yet unmatched pairs. 20335 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr3:99,849,238
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 728493 as yet unmatched pairs. 19281 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr3:112,340,862
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 726641 as yet unmatched pairs. 17429 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr3:120,404,901
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 726443 as yet unmatched pairs. 17196 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr3:124,763,711
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 725686 as yet unmatched pairs. 16432 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr3:128,895,338
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 722528 as yet unmatched pairs. 13269 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr3:133,587,886
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 721692 as yet unmatched pairs. 12428 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr3:143,022,503
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 719674 as yet unmatched pairs. 10406 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr3:156,543,254
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 719118 as yet unmatched pairs. 9839 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr3:172,133,445
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 717951 as yet unmatched pairs. 8666 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr3:183,928,792
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 715817 as yet unmatched pairs. 6532 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr3:184,381,196
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 714620 as yet unmatched pairs. 5335 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr3:188,524,759
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 715161 as yet unmatched pairs. 5874 records in RAM.
INFO 2026-06-08 09:06:50 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr3:195,442,823
INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 711329 as yet unmatched pairs. 2041 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr3:197,297,203
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 710289 as yet unmatched pairs. 996 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr4:1,225,409
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 708592 as yet unmatched pairs. 22025 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr4:3,206,833
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 706639 as yet unmatched pairs. 20069 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:8,291,547
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 706797 as yet unmatched pairs. 20211 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr4:24,527,955
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 703521 as yet unmatched pairs. 16931 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr4:39,898,468
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 702357 as yet unmatched pairs. 15761 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr4:54,267,567
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 701774 as yet unmatched pairs. 15176 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr4:67,673,708
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 699262 as yet unmatched pairs. 12658 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr4:76,949,778
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 697686 as yet unmatched pairs. 11070 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr4:84,740,324
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 696392 as yet unmatched pairs. 9767 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr4:94,451,956
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 695227 as yet unmatched pairs. 8599 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr4:106,232,965
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 693846 as yet unmatched pairs. 7203 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr4:121,932,429
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 692335 as yet unmatched pairs. 5665 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr4:140,634,134
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 691337 as yet unmatched pairs. 4661 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr4:152,411,821
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 689931 as yet unmatched pairs. 3253 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr4:168,877,898
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 689972 as yet unmatched pairs. 3281 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr4:186,613,158
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 687155 as yet unmatched pairs. 460 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr5:6,737,540
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 685458 as yet unmatched pairs. 39678 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr5:14,419,701
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 685472 as yet unmatched pairs. 39682 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:33,162,201
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 682329 as yet unmatched pairs. 36519 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:39,376,985
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 682218 as yet unmatched pairs. 36402 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr5:55,941,491
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 681450 as yet unmatched pairs. 35634 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr5:67,164,276
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 678709 as yet unmatched pairs. 32886 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr5:71,650,170
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 678039 as yet unmatched pairs. 32206 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr5:78,488,987
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 676340 as yet unmatched pairs. 30507 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr5:83,521,481
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 676527 as yet unmatched pairs. 30690 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr5:93,588,017
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 674306 as yet unmatched pairs. 28468 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr5:108,380,823
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 672396 as yet unmatched pairs. 26554 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr5:123,588,126
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 671108 as yet unmatched pairs. 25259 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr5:132,892,270
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 669704 as yet unmatched pairs. 23852 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr5:135,578,779
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 672910 as yet unmatched pairs. 27050 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr5:138,467,906
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 670871 as yet unmatched pairs. 25011 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr5:140,538,940
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 665434 as yet unmatched pairs. 19557 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr5:141,360,852
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 663572 as yet unmatched pairs. 17695 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr5:142,875,093
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 662713 as yet unmatched pairs. 16828 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr5:150,115,815
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 662729 as yet unmatched pairs. 16844 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,153
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 674461 as yet unmatched pairs. 28576 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,118
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 681730 as yet unmatched pairs. 35839 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr5:150,648,349
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 657124 as yet unmatched pairs. 11233 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr5:151,786,678
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 655619 as yet unmatched pairs. 9723 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr5:168,669,936
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 653559 as yet unmatched pairs. 7643 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr5:172,683,840
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 652088 as yet unmatched pairs. 6172 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr5:177,307,863
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 650917 as yet unmatched pairs. 4999 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr5:179,331,060
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 649237 as yet unmatched pairs. 3308 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr5:179,833,757
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 650537 as yet unmatched pairs. 4608 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr6:2,245,347
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 645836 as yet unmatched pairs. 42740 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr6:7,580,875
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 644834 as yet unmatched pairs. 41737 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr6:16,328,251
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 643176 as yet unmatched pairs. 40071 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:26,124,538
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 641642 as yet unmatched pairs. 38528 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:28,999,919
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 639951 as yet unmatched pairs. 36836 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:30,712,785
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 638644 as yet unmatched pairs. 35527 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,531,145
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 637710 as yet unmatched pairs. 34590 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr6:31,780,457
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 635939 as yet unmatched pairs. 32818 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,161
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 636774 as yet unmatched pairs. 33651 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,983,859
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 634571 as yet unmatched pairs. 31443 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr6:32,016,819
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 639266 as yet unmatched pairs. 36138 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 2s. Last read position: chr6:32,085,933
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 632635 as yet unmatched pairs. 29505 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr6:32,854,202
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 630791 as yet unmatched pairs. 27661 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr6:33,301,625
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 630060 as yet unmatched pairs. 26930 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr6:34,246,727
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 628349 as yet unmatched pairs. 25214 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr6:36,977,240
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 627811 as yet unmatched pairs. 24675 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr6:42,884,730
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 625343 as yet unmatched pairs. 22194 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 2s. Last read position: chr6:43,622,646
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 623898 as yet unmatched pairs. 20749 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr6:53,012,142
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 622316 as yet unmatched pairs. 19160 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 2s. Last read position: chr6:56,650,891
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 621332 as yet unmatched pairs. 18172 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr6:75,123,347
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 620342 as yet unmatched pairs. 17173 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr6:75,914,168
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 619031 as yet unmatched pairs. 15854 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr6:90,571,765
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 617119 as yet unmatched pairs. 13932 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr6:111,375,470
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 615659 as yet unmatched pairs. 12462 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr6:119,201,309
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 614406 as yet unmatched pairs. 11197 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr6:131,890,375
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 613039 as yet unmatched pairs. 9827 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr6:137,200,891
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 611488 as yet unmatched pairs. 8276 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr6:144,516,057
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 610279 as yet unmatched pairs. 7065 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr6:151,807,978
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 612616 as yet unmatched pairs. 9392 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 2s. Last read position: chr6:157,823,430
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 607224 as yet unmatched pairs. 3988 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 2s. Last read position: chr6:159,778,958
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 605543 as yet unmatched pairs. 2297 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr6:169,225,197
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 605909 as yet unmatched pairs. 2660 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr7:1,442,455
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 602962 as yet unmatched pairs. 42149 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr7:4,834,742
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 600623 as yet unmatched pairs. 39800 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 2s. Last read position: chr7:5,388,866
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 600064 as yet unmatched pairs. 39234 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,201
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 610338 as yet unmatched pairs. 49508 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr7:7,432,477
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 595959 as yet unmatched pairs. 35129 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr7:22,976,210
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 594719 as yet unmatched pairs. 33886 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:30,923,628
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 592967 as yet unmatched pairs. 32133 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:41,967,712
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 592171 as yet unmatched pairs. 31332 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr7:44,108,922
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 592226 as yet unmatched pairs. 31382 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,485,239
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 588610 as yet unmatched pairs. 27758 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr7:53,862,520
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 586922 as yet unmatched pairs. 26064 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr7:72,871,464
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 585597 as yet unmatched pairs. 24722 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr7:74,047,686
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 585355 as yet unmatched pairs. 24480 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr7:75,314,551
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 583376 as yet unmatched pairs. 22499 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:76,538,551
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 582098 as yet unmatched pairs. 21194 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr7:91,266,332
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 581107 as yet unmatched pairs. 20201 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr7:94,395,085
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 585561 as yet unmatched pairs. 24650 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr7:94,411,132
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 585410 as yet unmatched pairs. 24499 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr7:94,425,782
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 583749 as yet unmatched pairs. 22838 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr7:98,955,247
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 575336 as yet unmatched pairs. 14419 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,228
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 574534 as yet unmatched pairs. 13612 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr7:101,237,408
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 572105 as yet unmatched pairs. 11173 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr7:102,652,073
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 572111 as yet unmatched pairs. 11179 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:107,959,408
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 570910 as yet unmatched pairs. 9976 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr7:127,703,314
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 570407 as yet unmatched pairs. 9455 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr7:133,997,523
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 567653 as yet unmatched pairs. 6699 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:139,360,264
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 566797 as yet unmatched pairs. 5836 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr7:143,390,526
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 565850 as yet unmatched pairs. 4884 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:149,765,183
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 564069 as yet unmatched pairs. 3103 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr7:152,162,573
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 562374 as yet unmatched pairs. 1408 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:7,258,788
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 560762 as yet unmatched pairs. 28646 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:17,754,434
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 559617 as yet unmatched pairs. 27494 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr8:22,616,023
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 558218 as yet unmatched pairs. 26095 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr8:29,071,999
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 556965 as yet unmatched pairs. 24835 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:37,835,695
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 555547 as yet unmatched pairs. 23402 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr8:38,820,615
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 554443 as yet unmatched pairs. 22298 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr8:43,161,438
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 552783 as yet unmatched pairs. 20628 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr8:58,570,930
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 551143 as yet unmatched pairs. 18973 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr8:70,128,797
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 550143 as yet unmatched pairs. 17967 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr8:90,631,654
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 548175 as yet unmatched pairs. 15997 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,689
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 547638 as yet unmatched pairs. 15460 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr8:115,414,007
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 545728 as yet unmatched pairs. 13549 records in RAM.
INFO 2026-06-08 09:11:03 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:120,342,412
INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 544935 as yet unmatched pairs. 12754 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr8:130,167,585
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 542457 as yet unmatched pairs. 10269 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr8:143,468,236
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 540635 as yet unmatched pairs. 8441 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,729
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 538895 as yet unmatched pairs. 6700 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,086
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 539194 as yet unmatched pairs. 6999 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,891
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 538394 as yet unmatched pairs. 6198 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,705
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 537232 as yet unmatched pairs. 5036 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr8:144,360,267
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 533901 as yet unmatched pairs. 1697 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr9:740,920
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 532082 as yet unmatched pairs. 33784 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr9:14,146,689
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 531752 as yet unmatched pairs. 33443 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:32,485,184
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 529063 as yet unmatched pairs. 30751 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr9:35,077,274
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 527792 as yet unmatched pairs. 29479 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr9:35,740,946
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 526322 as yet unmatched pairs. 28005 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:69,718,465
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 525209 as yet unmatched pairs. 26871 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr9:84,811,651
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 523880 as yet unmatched pairs. 25537 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr9:92,474,794
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 522559 as yet unmatched pairs. 24205 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:96,641,805
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 520595 as yet unmatched pairs. 22237 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr9:104,819,586
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 519224 as yet unmatched pairs. 20863 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:111,931,282
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 518550 as yet unmatched pairs. 20186 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr9:114,423,199
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 516304 as yet unmatched pairs. 17940 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:121,193,402
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 514630 as yet unmatched pairs. 16265 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr9:124,888,305
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 513234 as yet unmatched pairs. 14857 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr9:127,871,900
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 511719 as yet unmatched pairs. 13339 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr9:128,626,399
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 510444 as yet unmatched pairs. 12064 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr9:130,403,863
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 508393 as yet unmatched pairs. 10004 records in RAM.
INFO 2026-06-08 09:11:54 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr9:131,584,400
INFO 2026-06-08 09:11:54 MarkDuplicates Tracking 507327 as yet unmatched pairs. 8937 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:134,036,276
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 505809 as yet unmatched pairs. 7414 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr9:134,812,608
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 506170 as yet unmatched pairs. 7763 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr9:136,474,406
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 503119 as yet unmatched pairs. 4712 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr9:137,015,022
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 501276 as yet unmatched pairs. 2869 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr9:137,574,337
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 498982 as yet unmatched pairs. 569 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr10:5,878,088
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 497332 as yet unmatched pairs. 27539 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr10:13,657,396
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 496149 as yet unmatched pairs. 26348 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:24,473,753
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 494795 as yet unmatched pairs. 24983 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr10:30,026,692
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 493282 as yet unmatched pairs. 23466 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 2s. Last read position: chr10:33,192,302
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 492339 as yet unmatched pairs. 22520 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr10:43,116,684
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 490920 as yet unmatched pairs. 21096 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr10:46,772,461
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 489632 as yet unmatched pairs. 19807 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr10:59,794,531
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 489488 as yet unmatched pairs. 19661 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr10:69,015,610
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 487316 as yet unmatched pairs. 17484 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr10:73,397,189
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 486274 as yet unmatched pairs. 16434 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr10:75,398,857
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 484584 as yet unmatched pairs. 14729 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr10:84,373,726
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 483456 as yet unmatched pairs. 13593 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr10:89,340,009
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 482030 as yet unmatched pairs. 12166 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr10:95,682,671
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 480626 as yet unmatched pairs. 10761 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr10:99,955,774
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 478946 as yet unmatched pairs. 9081 records in RAM.
INFO 2026-06-08 09:12:36 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr10:102,160,311
INFO 2026-06-08 09:12:36 MarkDuplicates Tracking 477563 as yet unmatched pairs. 7687 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr10:104,020,560
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 476120 as yet unmatched pairs. 6239 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr10:116,849,634
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 474385 as yet unmatched pairs. 4500 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr10:121,518,777
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 473560 as yet unmatched pairs. 3674 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr10:125,841,757
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 471786 as yet unmatched pairs. 1897 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:209,410
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 470359 as yet unmatched pairs. 54072 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:380,302
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 469080 as yet unmatched pairs. 52793 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr11:828,657
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 467334 as yet unmatched pairs. 51047 records in RAM.
INFO 2026-06-08 09:12:53 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,914
INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 468022 as yet unmatched pairs. 51735 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,705
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 465097 as yet unmatched pairs. 48810 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,757,508
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 465721 as yet unmatched pairs. 49434 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr11:4,091,653
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 462182 as yet unmatched pairs. 45895 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr11:7,648,882
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 460346 as yet unmatched pairs. 44059 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:9,852,689
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 458896 as yet unmatched pairs. 42609 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr11:14,469,413
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 457645 as yet unmatched pairs. 41357 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:31,650,131
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 456014 as yet unmatched pairs. 39720 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr11:36,400,840
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 454574 as yet unmatched pairs. 38280 records in RAM.
INFO 2026-06-08 09:13:11 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:46,381,126
INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 453053 as yet unmatched pairs. 36759 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:47,767,121
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 452048 as yet unmatched pairs. 35745 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr11:57,796,635
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 451296 as yet unmatched pairs. 34985 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:61,309,915
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 448852 as yet unmatched pairs. 32540 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr11:62,270,978
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 469810 as yet unmatched pairs. 53495 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:62,522,754
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 448331 as yet unmatched pairs. 32016 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,547
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 446134 as yet unmatched pairs. 29816 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr11:62,611,102
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 444275 as yet unmatched pairs. 27957 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:64,194,525
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 442266 as yet unmatched pairs. 25947 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr11:65,021,735
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 440782 as yet unmatched pairs. 24462 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:65,554,275
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 439351 as yet unmatched pairs. 23011 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:65,868,527
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 437167 as yet unmatched pairs. 20826 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr11:66,688,066
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 435002 as yet unmatched pairs. 18660 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:67,611,456
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 433763 as yet unmatched pairs. 17416 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr11:69,651,117
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 433651 as yet unmatched pairs. 17304 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:72,012,896
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 431599 as yet unmatched pairs. 15252 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr11:72,781,148
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 428859 as yet unmatched pairs. 12512 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr11:75,562,269
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 427113 as yet unmatched pairs. 10766 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr11:85,664,420
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 425583 as yet unmatched pairs. 9236 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr11:102,110,975
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 426038 as yet unmatched pairs. 9687 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr11:113,690,848
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 422583 as yet unmatched pairs. 6231 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr11:118,503,325
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 421270 as yet unmatched pairs. 4911 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr11:119,311,925
INFO 2026-06-08 09:13:56 MarkDuplicates Tracking 419698 as yet unmatched pairs. 3339 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr11:125,085,128
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 418300 as yet unmatched pairs. 1940 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr11:130,915,606
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 416913 as yet unmatched pairs. 552 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr12:2,799,099
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 415237 as yet unmatched pairs. 43075 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr12:6,557,561
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 413737 as yet unmatched pairs. 41573 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:6,968,477
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 412361 as yet unmatched pairs. 40197 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:9,074,672
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 412212 as yet unmatched pairs. 40047 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr12:12,519,840
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 410133 as yet unmatched pairs. 37965 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:21,477,932
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 408691 as yet unmatched pairs. 36523 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr12:31,295,270
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 407603 as yet unmatched pairs. 35430 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:46,365,133
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 407479 as yet unmatched pairs. 35303 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr12:49,034,230
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 405389 as yet unmatched pairs. 33212 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr12:49,654,907
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 403505 as yet unmatched pairs. 31327 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:51,806,724
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 401830 as yet unmatched pairs. 29647 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr12:52,898,849
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 400611 as yet unmatched pairs. 28428 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,441
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 399006 as yet unmatched pairs. 26823 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr12:54,283,939
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 399002 as yet unmatched pairs. 26819 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr12:56,098,893
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 396847 as yet unmatched pairs. 24664 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:56,598,739
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 395002 as yet unmatched pairs. 22817 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr12:57,102,452
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 395985 as yet unmatched pairs. 23800 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,185,151
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 393784 as yet unmatched pairs. 21599 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr12:57,488,109
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 391332 as yet unmatched pairs. 19137 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr12:64,193,982
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 389636 as yet unmatched pairs. 17441 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:71,782,582
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 388675 as yet unmatched pairs. 16474 records in RAM.
INFO 2026-06-08 09:14:45 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:91,145,899
INFO 2026-06-08 09:14:45 MarkDuplicates Tracking 387106 as yet unmatched pairs. 14904 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:95,787,186
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 388483 as yet unmatched pairs. 16280 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr12:103,943,752
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 384936 as yet unmatched pairs. 12732 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr12:109,098,361
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 383137 as yet unmatched pairs. 10922 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr12:112,140,820
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 381438 as yet unmatched pairs. 9220 records in RAM.
INFO 2026-06-08 09:14:55 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr12:114,674,450
INFO 2026-06-08 09:14:55 MarkDuplicates Tracking 380426 as yet unmatched pairs. 8207 records in RAM.
INFO 2026-06-08 09:14:57 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr12:120,221,371
INFO 2026-06-08 09:14:57 MarkDuplicates Tracking 378704 as yet unmatched pairs. 6484 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr12:122,489,441
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 377104 as yet unmatched pairs. 4870 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr12:124,343,202
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 377168 as yet unmatched pairs. 4932 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr12:131,986,270
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 374114 as yet unmatched pairs. 1876 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr13:19,772,439
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 372480 as yet unmatched pairs. 13016 records in RAM.
INFO 2026-06-08 09:15:07 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr13:25,337,027
INFO 2026-06-08 09:15:07 MarkDuplicates Tracking 370967 as yet unmatched pairs. 11503 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr13:37,570,598
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 374006 as yet unmatched pairs. 14540 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr13:44,574,468
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 368368 as yet unmatched pairs. 8900 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr13:51,957,462
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 367113 as yet unmatched pairs. 7645 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr13:77,168,447
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 365833 as yet unmatched pairs. 6362 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr13:98,881,925
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 364263 as yet unmatched pairs. 4791 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr13:110,162,362
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 363053 as yet unmatched pairs. 3581 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr13:111,283,205
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 360877 as yet unmatched pairs. 1405 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr14:20,408,321
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 359673 as yet unmatched pairs. 26863 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr14:22,771,329
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 357797 as yet unmatched pairs. 24986 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr14:23,324,144
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 356784 as yet unmatched pairs. 23973 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr14:24,326,125
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 354859 as yet unmatched pairs. 22045 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr14:35,123,907
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 353218 as yet unmatched pairs. 20403 records in RAM.
INFO 2026-06-08 09:15:35 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr14:49,828,326
INFO 2026-06-08 09:15:35 MarkDuplicates Tracking 352026 as yet unmatched pairs. 19192 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr14:55,064,613
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 350512 as yet unmatched pairs. 17672 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr14:61,746,930
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 349197 as yet unmatched pairs. 16357 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr14:67,887,143
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 347626 as yet unmatched pairs. 14786 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr14:71,589,227
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 346519 as yet unmatched pairs. 13673 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr14:74,552,233
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 345864 as yet unmatched pairs. 13007 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr14:75,281,381
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 344784 as yet unmatched pairs. 11927 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr14:89,162,687
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 342775 as yet unmatched pairs. 9917 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr14:94,469,533
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 340590 as yet unmatched pairs. 7730 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr14:100,149,675
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 339333 as yet unmatched pairs. 6472 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr14:102,944,432
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 337866 as yet unmatched pairs. 5002 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr14:104,944,800
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 336549 as yet unmatched pairs. 3685 records in RAM.
INFO 2026-06-08 09:15:59 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,162
INFO 2026-06-08 09:15:59 MarkDuplicates Tracking 337831 as yet unmatched pairs. 4965 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr14:105,741,652
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 335276 as yet unmatched pairs. 2408 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr15:25,679,729
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 332540 as yet unmatched pairs. 26524 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr15:34,038,816
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 331079 as yet unmatched pairs. 25063 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr15:39,593,468
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 332590 as yet unmatched pairs. 26574 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr15:41,740,004
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 328657 as yet unmatched pairs. 22638 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr15:43,438,324
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 326924 as yet unmatched pairs. 20903 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr15:44,669,284
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 325506 as yet unmatched pairs. 19481 records in RAM.
INFO 2026-06-08 09:16:16 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr15:48,537,793
INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 325259 as yet unmatched pairs. 19234 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr15:55,360,108
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 323264 as yet unmatched pairs. 17237 records in RAM.
INFO 2026-06-08 09:16:20 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr15:60,360,966
INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 321651 as yet unmatched pairs. 15606 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr15:63,641,623
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 320041 as yet unmatched pairs. 13986 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr15:65,490,201
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 318318 as yet unmatched pairs. 12261 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr15:69,452,940
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 319068 as yet unmatched pairs. 13008 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr15:72,752,389
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 315761 as yet unmatched pairs. 9693 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr15:74,640,464
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 313623 as yet unmatched pairs. 7555 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr15:77,179,190
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 312595 as yet unmatched pairs. 6527 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr15:82,536,803
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 312835 as yet unmatched pairs. 6761 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr15:88,887,184
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 309435 as yet unmatched pairs. 3361 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr15:90,875,843
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 308264 as yet unmatched pairs. 2189 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr15:101,065,789
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 306801 as yet unmatched pairs. 726 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 2s. Last read position: chr16:552,297
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 305055 as yet unmatched pairs. 42812 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 2s. Last read position: chr16:1,314,344
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 303199 as yet unmatched pairs. 40956 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr16:1,827,844
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 301103 as yet unmatched pairs. 38860 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr16:2,118,183
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 299468 as yet unmatched pairs. 37225 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr16:2,762,856
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 299111 as yet unmatched pairs. 36868 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:2,930,646
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 297115 as yet unmatched pairs. 34872 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 2s. Last read position: chr16:4,114,380
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 294952 as yet unmatched pairs. 32709 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr16:9,092,102
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 294584 as yet unmatched pairs. 32337 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr16:14,247,388
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 293483 as yet unmatched pairs. 31236 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr16:15,001,819
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 292333 as yet unmatched pairs. 30083 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr16:16,263,564
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 289745 as yet unmatched pairs. 27495 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr16:16,393,543
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 289554 as yet unmatched pairs. 27304 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:18,417,902
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 288313 as yet unmatched pairs. 26062 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr16:19,637,636
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 287232 as yet unmatched pairs. 24977 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,615
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 287117 as yet unmatched pairs. 24862 records in RAM.
INFO 2026-06-08 09:17:11 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,281
INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 285777 as yet unmatched pairs. 23516 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr16:27,774,967
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 284503 as yet unmatched pairs. 22238 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr16:28,836,779
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 283549 as yet unmatched pairs. 21284 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr16:29,605,428
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 282568 as yet unmatched pairs. 20301 records in RAM.
INFO 2026-06-08 09:17:18 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr16:30,187,383
INFO 2026-06-08 09:17:18 MarkDuplicates Tracking 281403 as yet unmatched pairs. 19132 records in RAM.
INFO 2026-06-08 09:17:20 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr16:30,721,410
INFO 2026-06-08 09:17:20 MarkDuplicates Tracking 280171 as yet unmatched pairs. 17899 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 2s. Last read position: chr16:31,189,097
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 280921 as yet unmatched pairs. 18646 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr16:48,299,688
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 277295 as yet unmatched pairs. 15020 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr16:54,932,848
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 275720 as yet unmatched pairs. 13444 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr16:57,521,085
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 273851 as yet unmatched pairs. 11574 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 2s. Last read position: chr16:67,154,712
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 272465 as yet unmatched pairs. 10188 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr16:68,352,297
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 270643 as yet unmatched pairs. 8366 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr16:70,664,267
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 269801 as yet unmatched pairs. 7522 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr16:75,600,269
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 267828 as yet unmatched pairs. 5549 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr16:85,708,008
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 266220 as yet unmatched pairs. 3931 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr16:88,717,114
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 264830 as yet unmatched pairs. 2539 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr16:89,738,628
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 263042 as yet unmatched pairs. 751 records in RAM.
INFO 2026-06-08 09:17:45 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 3s. Last read position: chr17:1,676,630
INFO 2026-06-08 09:17:45 MarkDuplicates Tracking 261597 as yet unmatched pairs. 88955 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr17:3,945,112
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 259501 as yet unmatched pairs. 86859 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 2s. Last read position: chr17:5,210,943
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 258039 as yet unmatched pairs. 85397 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr17:7,462,701
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 257424 as yet unmatched pairs. 84782 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:7,907,353
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 255451 as yet unmatched pairs. 82809 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr17:15,613,780
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 253592 as yet unmatched pairs. 80948 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr17:17,884,746
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 252474 as yet unmatched pairs. 79824 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 2s. Last read position: chr17:27,597,398
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 251171 as yet unmatched pairs. 78514 records in RAM.
INFO 2026-06-08 09:18:01 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:28,957,858
INFO 2026-06-08 09:18:01 MarkDuplicates Tracking 249399 as yet unmatched pairs. 76742 records in RAM.
INFO 2026-06-08 09:18:03 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr17:31,334,844
INFO 2026-06-08 09:18:03 MarkDuplicates Tracking 248273 as yet unmatched pairs. 75616 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:35,838,478
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 246704 as yet unmatched pairs. 74043 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:38,419,576
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 245759 as yet unmatched pairs. 73098 records in RAM.
INFO 2026-06-08 09:18:09 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 2s. Last read position: chr17:39,410,519
INFO 2026-06-08 09:18:09 MarkDuplicates Tracking 244355 as yet unmatched pairs. 71690 records in RAM.
INFO 2026-06-08 09:18:11 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,537
INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 251500 as yet unmatched pairs. 78834 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 2s. Last read position: chr17:40,123,086
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 241568 as yet unmatched pairs. 68902 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:41,689,038
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 241319 as yet unmatched pairs. 68653 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr17:42,333,941
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 238947 as yet unmatched pairs. 66275 records in RAM.
INFO 2026-06-08 09:18:19 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:43,018,087
INFO 2026-06-08 09:18:19 MarkDuplicates Tracking 237090 as yet unmatched pairs. 64415 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr17:44,436,479
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 235497 as yet unmatched pairs. 62822 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr17:46,419,916
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 234000 as yet unmatched pairs. 61322 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:48,059,590
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 233049 as yet unmatched pairs. 60368 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,560
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 243271 as yet unmatched pairs. 70590 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,675
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 240493 as yet unmatched pairs. 67812 records in RAM.
INFO 2026-06-08 09:18:31 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,086
INFO 2026-06-08 09:18:31 MarkDuplicates Tracking 296372 as yet unmatched pairs. 123691 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,946
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 304899 as yet unmatched pairs. 132217 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,578
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 283403 as yet unmatched pairs. 110721 records in RAM.
INFO 2026-06-08 09:18:38 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,974
INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 285297 as yet unmatched pairs. 112615 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,458
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 275643 as yet unmatched pairs. 102961 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,866
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 300984 as yet unmatched pairs. 128302 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,328
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 306255 as yet unmatched pairs. 133573 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,891
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 269731 as yet unmatched pairs. 97049 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,843
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 282835 as yet unmatched pairs. 110153 records in RAM.
INFO 2026-06-08 09:21:00 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 130s. Last read position: chr17:50,192,652
INFO 2026-06-08 09:21:00 MarkDuplicates Tracking 276281 as yet unmatched pairs. 103599 records in RAM.
INFO 2026-06-08 09:21:03 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,019
INFO 2026-06-08 09:21:03 MarkDuplicates Tracking 288118 as yet unmatched pairs. 115432 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,129
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 300142 as yet unmatched pairs. 127456 records in RAM.
INFO 2026-06-08 09:21:07 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,572
INFO 2026-06-08 09:21:07 MarkDuplicates Tracking 264713 as yet unmatched pairs. 92026 records in RAM.
INFO 2026-06-08 09:21:09 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,814
INFO 2026-06-08 09:21:09 MarkDuplicates Tracking 285313 as yet unmatched pairs. 112625 records in RAM.
INFO 2026-06-08 09:21:12 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,457
INFO 2026-06-08 09:21:12 MarkDuplicates Tracking 255438 as yet unmatched pairs. 82737 records in RAM.
INFO 2026-06-08 09:21:14 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,944
INFO 2026-06-08 09:21:14 MarkDuplicates Tracking 259819 as yet unmatched pairs. 87118 records in RAM.
INFO 2026-06-08 09:21:16 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,313
INFO 2026-06-08 09:21:16 MarkDuplicates Tracking 291679 as yet unmatched pairs. 118972 records in RAM.
INFO 2026-06-08 09:21:19 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,648
INFO 2026-06-08 09:21:19 MarkDuplicates Tracking 284666 as yet unmatched pairs. 111959 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,739
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 277228 as yet unmatched pairs. 104521 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,461
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 247839 as yet unmatched pairs. 75132 records in RAM.
INFO 2026-06-08 09:21:26 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,555
INFO 2026-06-08 09:21:26 MarkDuplicates Tracking 222752 as yet unmatched pairs. 50045 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,470,990
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 195204 as yet unmatched pairs. 22497 records in RAM.
INFO 2026-06-08 09:21:30 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr17:57,983,287
INFO 2026-06-08 09:21:30 MarkDuplicates Tracking 193944 as yet unmatched pairs. 21237 records in RAM.
INFO 2026-06-08 09:21:32 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr17:59,685,595
INFO 2026-06-08 09:21:32 MarkDuplicates Tracking 194547 as yet unmatched pairs. 21840 records in RAM.
INFO 2026-06-08 09:21:34 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr17:63,405,142
INFO 2026-06-08 09:21:34 MarkDuplicates Tracking 190929 as yet unmatched pairs. 18222 records in RAM.
INFO 2026-06-08 09:21:37 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chr17:64,758,550
INFO 2026-06-08 09:21:37 MarkDuplicates Tracking 189398 as yet unmatched pairs. 16690 records in RAM.
INFO 2026-06-08 09:21:39 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,429
INFO 2026-06-08 09:21:39 MarkDuplicates Tracking 192597 as yet unmatched pairs. 19886 records in RAM.
INFO 2026-06-08 09:21:41 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr17:75,039,015
INFO 2026-06-08 09:21:41 MarkDuplicates Tracking 187101 as yet unmatched pairs. 14385 records in RAM.
INFO 2026-06-08 09:21:43 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr17:75,727,677
INFO 2026-06-08 09:21:43 MarkDuplicates Tracking 185225 as yet unmatched pairs. 12509 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 2s. Last read position: chr17:76,452,959
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 183408 as yet unmatched pairs. 10688 records in RAM.
INFO 2026-06-08 09:21:47 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr17:78,802,488
INFO 2026-06-08 09:21:47 MarkDuplicates Tracking 181763 as yet unmatched pairs. 9042 records in RAM.
INFO 2026-06-08 09:21:50 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr17:80,289,719
INFO 2026-06-08 09:21:50 MarkDuplicates Tracking 180304 as yet unmatched pairs. 7575 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 2s. Last read position: chr17:81,252,460
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 178750 as yet unmatched pairs. 6021 records in RAM.
INFO 2026-06-08 09:21:54 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr17:81,855,258
INFO 2026-06-08 09:21:54 MarkDuplicates Tracking 178832 as yet unmatched pairs. 6100 records in RAM.
INFO 2026-06-08 09:21:56 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 2s. Last read position: chr17:82,084,117
INFO 2026-06-08 09:21:56 MarkDuplicates Tracking 178103 as yet unmatched pairs. 5368 records in RAM.
INFO 2026-06-08 09:21:58 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 2s. Last read position: chr17:82,253,205
INFO 2026-06-08 09:21:58 MarkDuplicates Tracking 173824 as yet unmatched pairs. 1089 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr18:6,462,169
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 172168 as yet unmatched pairs. 8921 records in RAM.
INFO 2026-06-08 09:22:03 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr18:14,222,116
INFO 2026-06-08 09:22:03 MarkDuplicates Tracking 170889 as yet unmatched pairs. 7640 records in RAM.
INFO 2026-06-08 09:22:05 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr18:29,153,268
INFO 2026-06-08 09:22:05 MarkDuplicates Tracking 169226 as yet unmatched pairs. 5977 records in RAM.
INFO 2026-06-08 09:22:07 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr18:36,786,887
INFO 2026-06-08 09:22:07 MarkDuplicates Tracking 168138 as yet unmatched pairs. 4888 records in RAM.
INFO 2026-06-08 09:22:10 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr18:50,284,403
INFO 2026-06-08 09:22:10 MarkDuplicates Tracking 166833 as yet unmatched pairs. 3581 records in RAM.
INFO 2026-06-08 09:22:12 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr18:62,860,561
INFO 2026-06-08 09:22:12 MarkDuplicates Tracking 165091 as yet unmatched pairs. 1836 records in RAM.
INFO 2026-06-08 09:22:15 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr19:422,236
INFO 2026-06-08 09:22:15 MarkDuplicates Tracking 163560 as yet unmatched pairs. 75058 records in RAM.
INFO 2026-06-08 09:22:17 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr19:1,011,648
INFO 2026-06-08 09:22:17 MarkDuplicates Tracking 162662 as yet unmatched pairs. 74159 records in RAM.
INFO 2026-06-08 09:22:19 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr19:1,271,141
INFO 2026-06-08 09:22:19 MarkDuplicates Tracking 160381 as yet unmatched pairs. 71878 records in RAM.
INFO 2026-06-08 09:22:21 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 2s. Last read position: chr19:1,854,562
INFO 2026-06-08 09:22:21 MarkDuplicates Tracking 158086 as yet unmatched pairs. 69582 records in RAM.
INFO 2026-06-08 09:22:23 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr19:2,477,032
INFO 2026-06-08 09:22:23 MarkDuplicates Tracking 157520 as yet unmatched pairs. 69016 records in RAM.
INFO 2026-06-08 09:22:25 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 2s. Last read position: chr19:3,661,014
INFO 2026-06-08 09:22:25 MarkDuplicates Tracking 153998 as yet unmatched pairs. 65494 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chr19:4,555,090
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 152253 as yet unmatched pairs. 63747 records in RAM.
INFO 2026-06-08 09:22:30 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr19:5,691,351
INFO 2026-06-08 09:22:30 MarkDuplicates Tracking 150975 as yet unmatched pairs. 62469 records in RAM.
INFO 2026-06-08 09:22:32 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr19:6,702,204
INFO 2026-06-08 09:22:32 MarkDuplicates Tracking 149998 as yet unmatched pairs. 61492 records in RAM.
INFO 2026-06-08 09:22:34 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr19:7,550,583
INFO 2026-06-08 09:22:34 MarkDuplicates Tracking 147725 as yet unmatched pairs. 59219 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 2s. Last read position: chr19:8,486,082
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 146855 as yet unmatched pairs. 58349 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr19:8,961,529
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 144368 as yet unmatched pairs. 55862 records in RAM.
INFO 2026-06-08 09:22:40 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr19:10,287,174
INFO 2026-06-08 09:22:40 MarkDuplicates Tracking 142713 as yet unmatched pairs. 54207 records in RAM.
INFO 2026-06-08 09:22:42 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr19:10,913,933
INFO 2026-06-08 09:22:42 MarkDuplicates Tracking 141585 as yet unmatched pairs. 53076 records in RAM.
INFO 2026-06-08 09:22:44 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr19:11,447,458
INFO 2026-06-08 09:22:44 MarkDuplicates Tracking 140452 as yet unmatched pairs. 51943 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr19:12,792,048
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 140279 as yet unmatched pairs. 51770 records in RAM.
INFO 2026-06-08 09:22:49 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 2s. Last read position: chr19:13,153,517
INFO 2026-06-08 09:22:49 MarkDuplicates Tracking 139525 as yet unmatched pairs. 51016 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr19:14,478,347
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 135211 as yet unmatched pairs. 46702 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr19:15,188,336
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 133469 as yet unmatched pairs. 44960 records in RAM.
INFO 2026-06-08 09:22:55 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 2s. Last read position: chr19:15,628,309
INFO 2026-06-08 09:22:55 MarkDuplicates Tracking 132345 as yet unmatched pairs. 43836 records in RAM.
INFO 2026-06-08 09:22:58 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr19:17,203,231
INFO 2026-06-08 09:22:58 MarkDuplicates Tracking 129484 as yet unmatched pairs. 40975 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 2s. Last read position: chr19:17,863,183
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 127390 as yet unmatched pairs. 38877 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:18,683,706
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 126195 as yet unmatched pairs. 37681 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 2s. Last read position: chr19:19,342,829
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 124434 as yet unmatched pairs. 35918 records in RAM.
INFO 2026-06-08 09:23:06 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chr19:33,021,597
INFO 2026-06-08 09:23:06 MarkDuplicates Tracking 122417 as yet unmatched pairs. 33901 records in RAM.
INFO 2026-06-08 09:23:08 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr19:35,269,862
INFO 2026-06-08 09:23:08 MarkDuplicates Tracking 121845 as yet unmatched pairs. 33329 records in RAM.
INFO 2026-06-08 09:23:10 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 2s. Last read position: chr19:37,185,665
INFO 2026-06-08 09:23:10 MarkDuplicates Tracking 118936 as yet unmatched pairs. 30419 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 2s. Last read position: chr19:38,838,947
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 118347 as yet unmatched pairs. 29827 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr19:39,433,519
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 119049 as yet unmatched pairs. 30529 records in RAM.
INFO 2026-06-08 09:23:17 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 2s. Last read position: chr19:39,902,360
INFO 2026-06-08 09:23:17 MarkDuplicates Tracking 115999 as yet unmatched pairs. 27479 records in RAM.
INFO 2026-06-08 09:23:19 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 2s. Last read position: chr19:40,622,463
INFO 2026-06-08 09:23:19 MarkDuplicates Tracking 113860 as yet unmatched pairs. 25340 records in RAM.
INFO 2026-06-08 09:23:21 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 2s. Last read position: chr19:41,869,172
INFO 2026-06-08 09:23:21 MarkDuplicates Tracking 112840 as yet unmatched pairs. 24320 records in RAM.
INFO 2026-06-08 09:23:23 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chr19:42,291,334
INFO 2026-06-08 09:23:23 MarkDuplicates Tracking 110332 as yet unmatched pairs. 21812 records in RAM.
INFO 2026-06-08 09:23:26 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 2s. Last read position: chr19:44,749,017
INFO 2026-06-08 09:23:26 MarkDuplicates Tracking 108527 as yet unmatched pairs. 20007 records in RAM.
INFO 2026-06-08 09:23:28 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 2s. Last read position: chr19:45,145,744
INFO 2026-06-08 09:23:28 MarkDuplicates Tracking 106859 as yet unmatched pairs. 18339 records in RAM.
INFO 2026-06-08 09:23:30 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 2s. Last read position: chr19:45,777,819
INFO 2026-06-08 09:23:30 MarkDuplicates Tracking 105139 as yet unmatched pairs. 16619 records in RAM.
INFO 2026-06-08 09:23:32 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr19:47,226,714
INFO 2026-06-08 09:23:32 MarkDuplicates Tracking 103235 as yet unmatched pairs. 14715 records in RAM.
INFO 2026-06-08 09:23:34 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 2s. Last read position: chr19:48,615,435
INFO 2026-06-08 09:23:34 MarkDuplicates Tracking 102538 as yet unmatched pairs. 14018 records in RAM.
INFO 2026-06-08 09:23:37 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chr19:49,211,049
INFO 2026-06-08 09:23:37 MarkDuplicates Tracking 100105 as yet unmatched pairs. 11585 records in RAM.
INFO 2026-06-08 09:23:39 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chr19:49,652,015
INFO 2026-06-08 09:23:39 MarkDuplicates Tracking 98144 as yet unmatched pairs. 9624 records in RAM.
INFO 2026-06-08 09:23:41 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 2s. Last read position: chr19:50,382,123
INFO 2026-06-08 09:23:41 MarkDuplicates Tracking 96591 as yet unmatched pairs. 8071 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 2s. Last read position: chr19:53,873,886
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 95034 as yet unmatched pairs. 6514 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chr19:55,079,725
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 94140 as yet unmatched pairs. 5620 records in RAM.
INFO 2026-06-08 09:23:48 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 2s. Last read position: chr19:55,669,091
INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 92081 as yet unmatched pairs. 3561 records in RAM.
INFO 2026-06-08 09:23:50 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chr19:57,915,300
INFO 2026-06-08 09:23:50 MarkDuplicates Tracking 90026 as yet unmatched pairs. 1506 records in RAM.
INFO 2026-06-08 09:23:52 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 2s. Last read position: chr20:845,482
INFO 2026-06-08 09:23:52 MarkDuplicates Tracking 88505 as yet unmatched pairs. 21871 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 2s. Last read position: chr20:3,786,121
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 86838 as yet unmatched pairs. 20204 records in RAM.
INFO 2026-06-08 09:23:57 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 2s. Last read position: chr20:17,621,900
INFO 2026-06-08 09:23:57 MarkDuplicates Tracking 85281 as yet unmatched pairs. 18647 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 2s. Last read position: chr20:24,963,794
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 83594 as yet unmatched pairs. 16960 records in RAM.
INFO 2026-06-08 09:24:01 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr20:33,438,906
INFO 2026-06-08 09:24:01 MarkDuplicates Tracking 81778 as yet unmatched pairs. 15144 records in RAM.
INFO 2026-06-08 09:24:03 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr20:35,654,884
INFO 2026-06-08 09:24:03 MarkDuplicates Tracking 80527 as yet unmatched pairs. 13890 records in RAM.
INFO 2026-06-08 09:24:05 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr20:38,246,092
INFO 2026-06-08 09:24:05 MarkDuplicates Tracking 78989 as yet unmatched pairs. 12352 records in RAM.
INFO 2026-06-08 09:24:08 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: chr20:44,901,581
INFO 2026-06-08 09:24:08 MarkDuplicates Tracking 78206 as yet unmatched pairs. 11568 records in RAM.
INFO 2026-06-08 09:24:10 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 2s. Last read position: chr20:47,183,288
INFO 2026-06-08 09:24:10 MarkDuplicates Tracking 75893 as yet unmatched pairs. 9255 records in RAM.
INFO 2026-06-08 09:24:12 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 2s. Last read position: chr20:49,252,799
INFO 2026-06-08 09:24:12 MarkDuplicates Tracking 74626 as yet unmatched pairs. 7988 records in RAM.
INFO 2026-06-08 09:24:14 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr20:53,944,867
INFO 2026-06-08 09:24:14 MarkDuplicates Tracking 73352 as yet unmatched pairs. 6714 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr20:58,997,612
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 72127 as yet unmatched pairs. 5489 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 2s. Last read position: chr20:62,387,853
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 72048 as yet unmatched pairs. 5410 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr20:63,592,092
INFO 2026-06-08 09:24:21 MarkDuplicates Tracking 67997 as yet unmatched pairs. 1359 records in RAM.
INFO 2026-06-08 09:24:23 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 2s. Last read position: chr21:5,972,980
INFO 2026-06-08 09:24:23 MarkDuplicates Tracking 66479 as yet unmatched pairs. 14308 records in RAM.
INFO 2026-06-08 09:24:25 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 1s. Last read position: chr21:8,259,027
INFO 2026-06-08 09:24:25 MarkDuplicates Tracking 65727 as yet unmatched pairs. 13554 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,286
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 64681 as yet unmatched pairs. 12506 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 1s. Last read position: chr21:29,066,760
INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 63764 as yet unmatched pairs. 11589 records in RAM.
INFO 2026-06-08 09:24:30 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 2s. Last read position: chr21:34,859,527
INFO 2026-06-08 09:24:30 MarkDuplicates Tracking 63219 as yet unmatched pairs. 11044 records in RAM.
INFO 2026-06-08 09:24:32 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 2s. Last read position: chr21:39,270,308
INFO 2026-06-08 09:24:32 MarkDuplicates Tracking 60971 as yet unmatched pairs. 8796 records in RAM.
INFO 2026-06-08 09:24:35 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 2s. Last read position: chr21:43,755,950
INFO 2026-06-08 09:24:35 MarkDuplicates Tracking 59359 as yet unmatched pairs. 7176 records in RAM.
INFO 2026-06-08 09:24:37 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 2s. Last read position: chr21:45,456,314
INFO 2026-06-08 09:24:37 MarkDuplicates Tracking 59192 as yet unmatched pairs. 7009 records in RAM.
INFO 2026-06-08 09:24:39 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 2s. Last read position: chr21:45,992,770
INFO 2026-06-08 09:24:39 MarkDuplicates Tracking 58042 as yet unmatched pairs. 5859 records in RAM.
INFO 2026-06-08 09:24:41 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 2s. Last read position: chr21:46,122,491
INFO 2026-06-08 09:24:41 MarkDuplicates Tracking 57095 as yet unmatched pairs. 4912 records in RAM.
INFO 2026-06-08 09:24:44 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 2s. Last read position: chr22:17,109,179
INFO 2026-06-08 09:24:44 MarkDuplicates Tracking 52454 as yet unmatched pairs. 27177 records in RAM.
INFO 2026-06-08 09:24:46 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 2s. Last read position: chr22:20,425,860
INFO 2026-06-08 09:24:46 MarkDuplicates Tracking 50973 as yet unmatched pairs. 25695 records in RAM.
INFO 2026-06-08 09:24:48 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 2s. Last read position: chr22:23,260,994
INFO 2026-06-08 09:24:48 MarkDuplicates Tracking 49896 as yet unmatched pairs. 24618 records in RAM.
INFO 2026-06-08 09:24:50 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:23:30s. Time for last 1,000,000: 2s. Last read position: chr22:24,177,568
INFO 2026-06-08 09:24:50 MarkDuplicates Tracking 47747 as yet unmatched pairs. 22469 records in RAM.
INFO 2026-06-08 09:24:53 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr22:28,795,596
INFO 2026-06-08 09:24:53 MarkDuplicates Tracking 55188 as yet unmatched pairs. 29910 records in RAM.
INFO 2026-06-08 09:24:55 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 2s. Last read position: chr22:29,340,758
INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 44523 as yet unmatched pairs. 19245 records in RAM.
INFO 2026-06-08 09:24:57 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 2s. Last read position: chr22:31,344,402
INFO 2026-06-08 09:24:57 MarkDuplicates Tracking 42637 as yet unmatched pairs. 17358 records in RAM.
INFO 2026-06-08 09:24:59 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chr22:36,284,408
INFO 2026-06-08 09:24:59 MarkDuplicates Tracking 41942 as yet unmatched pairs. 16663 records in RAM.
INFO 2026-06-08 09:25:01 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr22:36,864,915
INFO 2026-06-08 09:25:01 MarkDuplicates Tracking 39428 as yet unmatched pairs. 14149 records in RAM.
INFO 2026-06-08 09:25:04 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 2s. Last read position: chr22:38,214,449
INFO 2026-06-08 09:25:04 MarkDuplicates Tracking 38521 as yet unmatched pairs. 13242 records in RAM.
INFO 2026-06-08 09:25:06 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 2s. Last read position: chr22:39,415,505
INFO 2026-06-08 09:25:06 MarkDuplicates Tracking 36236 as yet unmatched pairs. 10957 records in RAM.
INFO 2026-06-08 09:25:08 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 2s. Last read position: chr22:41,325,741
INFO 2026-06-08 09:25:08 MarkDuplicates Tracking 34688 as yet unmatched pairs. 9409 records in RAM.
INFO 2026-06-08 09:25:10 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 2s. Last read position: chr22:42,630,937
INFO 2026-06-08 09:25:10 MarkDuplicates Tracking 34190 as yet unmatched pairs. 8911 records in RAM.
INFO 2026-06-08 09:25:13 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 2s. Last read position: chr22:46,367,098
INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 32343 as yet unmatched pairs. 7064 records in RAM.
INFO 2026-06-08 09:25:15 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:23:55s. Time for last 1,000,000: 2s. Last read position: chr22:49,904,168
INFO 2026-06-08 09:25:15 MarkDuplicates Tracking 29797 as yet unmatched pairs. 4518 records in RAM.
INFO 2026-06-08 09:25:17 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 2s. Last read position: chr22:50,312,615
INFO 2026-06-08 09:25:17 MarkDuplicates Tracking 28175 as yet unmatched pairs. 2896 records in RAM.
INFO 2026-06-08 09:25:19 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 2s. Last read position: chr22:50,626,691
INFO 2026-06-08 09:25:19 MarkDuplicates Tracking 25856 as yet unmatched pairs. 577 records in RAM.
INFO 2026-06-08 09:25:22 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:24:01s. Time for last 1,000,000: 2s. Last read position: chrX:3,320,307
INFO 2026-06-08 09:25:22 MarkDuplicates Tracking 25056 as yet unmatched pairs. 20758 records in RAM.
INFO 2026-06-08 09:25:24 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 2s. Last read position: chrX:16,754,918
INFO 2026-06-08 09:25:24 MarkDuplicates Tracking 23078 as yet unmatched pairs. 18780 records in RAM.
INFO 2026-06-08 09:25:26 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 2s. Last read position: chrX:38,149,711
INFO 2026-06-08 09:25:26 MarkDuplicates Tracking 21386 as yet unmatched pairs. 17086 records in RAM.
INFO 2026-06-08 09:25:28 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chrX:47,185,760
INFO 2026-06-08 09:25:28 MarkDuplicates Tracking 20088 as yet unmatched pairs. 15788 records in RAM.
INFO 2026-06-08 09:25:30 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 2s. Last read position: chrX:48,999,390
INFO 2026-06-08 09:25:30 MarkDuplicates Tracking 18400 as yet unmatched pairs. 14100 records in RAM.
INFO 2026-06-08 09:25:32 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 2s. Last read position: chrX:53,538,333
INFO 2026-06-08 09:25:32 MarkDuplicates Tracking 17332 as yet unmatched pairs. 13032 records in RAM.
INFO 2026-06-08 09:25:35 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 2s. Last read position: chrX:65,523,560
INFO 2026-06-08 09:25:35 MarkDuplicates Tracking 15675 as yet unmatched pairs. 11375 records in RAM.
INFO 2026-06-08 09:25:37 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:24:17s. Time for last 1,000,000: 2s. Last read position: chrX:71,554,554
INFO 2026-06-08 09:25:37 MarkDuplicates Tracking 15195 as yet unmatched pairs. 10895 records in RAM.
INFO 2026-06-08 09:25:39 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:24:19s. Time for last 1,000,000: 2s. Last read position: chrX:78,124,923
INFO 2026-06-08 09:25:39 MarkDuplicates Tracking 13294 as yet unmatched pairs. 8994 records in RAM.
INFO 2026-06-08 09:25:41 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 1s. Last read position: chrX:107,775,223
INFO 2026-06-08 09:25:41 MarkDuplicates Tracking 11601 as yet unmatched pairs. 7301 records in RAM.
INFO 2026-06-08 09:25:43 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chrX:120,544,481
INFO 2026-06-08 09:25:43 MarkDuplicates Tracking 10407 as yet unmatched pairs. 6107 records in RAM.
INFO 2026-06-08 09:25:46 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 2s. Last read position: chrX:148,052,591
INFO 2026-06-08 09:25:46 MarkDuplicates Tracking 8907 as yet unmatched pairs. 4607 records in RAM.
INFO 2026-06-08 09:25:48 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 2s. Last read position: chrX:153,955,432
INFO 2026-06-08 09:25:48 MarkDuplicates Tracking 7914 as yet unmatched pairs. 3613 records in RAM.
INFO 2026-06-08 09:25:50 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:24:30s. Time for last 1,000,000: 2s. Last read position: chrX:154,361,720
INFO 2026-06-08 09:25:50 MarkDuplicates Tracking 6986 as yet unmatched pairs. 2685 records in RAM.
INFO 2026-06-08 09:25:52 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 2s. Last read position: chrX:154,560,515
INFO 2026-06-08 09:25:52 MarkDuplicates Tracking 4610 as yet unmatched pairs. 309 records in RAM.
INFO 2026-06-08 09:25:54 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 1s. Last read position: GL000220.1:151,536
INFO 2026-06-08 09:25:54 MarkDuplicates Tracking 3087 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 09:25:55 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,410
INFO 2026-06-08 09:25:55 MarkDuplicates Tracking 491 as yet unmatched pairs. 415 records in RAM.
INFO 2026-06-08 09:25:57 MarkDuplicates Read 629783435 records. 0 pairs never matched.
INFO 2026-06-08 09:26:41 MarkDuplicates After buildSortedReadEndLists freeMemory: 58261939576; totalMemory: 83214991360; maxMemory: 127137742848
INFO 2026-06-08 09:26:41 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 09:26:42 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 09:27:11 OpticalDuplicateFinder Large duplicate set. size = 1475
INFO 2026-06-08 09:27:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,225
INFO 2026-06-08 09:27:11 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:27:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,861
INFO 2026-06-08 09:27:12 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:27:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,636
INFO 2026-06-08 09:27:19 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:27:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,498
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,346
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,998
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,940
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder Large duplicate set. size = 1648
INFO 2026-06-08 09:28:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,018
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,024
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,864
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,256
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,314
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,549
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1734
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,654
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,066
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:28:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,764
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,509
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,200
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,275
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,068
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1465
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,574
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1572
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,006
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,603
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,886
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,308
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,460
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,014
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 09:28:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,314
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,941
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,159
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,775
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1238
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,839
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,802
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,403
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1322
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,257
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 1611
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,145
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder Large duplicate set. size = 2068
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,579
INFO 2026-06-08 09:28:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,577
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1477
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,372
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1334
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,193
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 2083
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,119
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,838
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,866
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1296
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,097
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,481
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,277
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,356
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 2120
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,941
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,338
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,483
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,113
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1448
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,741
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,702
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,579
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 2269
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,979
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,711
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,488
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,404
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder Large duplicate set. size = 1512
INFO 2026-06-08 09:28:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,542
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,024
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,641
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder Large duplicate set. size = 1447
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,976
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,521
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,115
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder Large duplicate set. size = 1682
INFO 2026-06-08 09:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,802
INFO 2026-06-08 09:28:21 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:28:22 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:29:43 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:29:54 MarkDuplicates After generateDuplicateIndexes freeMemory: 203915280; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 09:29:54 MarkDuplicates Marking 431619524 records as duplicates.
INFO 2026-06-08 09:29:54 MarkDuplicates Found 15213127 optical duplicate clusters.
INFO 2026-06-08 09:29:54 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:30:11 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:27,547,796
INFO 2026-06-08 09:30:28 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:52,027,323
INFO 2026-06-08 09:30:44 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:119,917,664
INFO 2026-06-08 09:31:01 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 16s. Last read position: chr1:155,191,288
INFO 2026-06-08 09:31:18 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:186,317,506
INFO 2026-06-08 09:31:35 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr1:235,119,817
INFO 2026-06-08 09:31:52 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:57s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:32:09 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:14s. Time for last 10,000,000: 16s. Last read position: chr2:96,864,320
INFO 2026-06-08 09:32:26 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:31s. Time for last 10,000,000: 17s. Last read position: chr2:171,692,871
INFO 2026-06-08 09:32:43 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 17s. Last read position: chr2:215,364,973
INFO 2026-06-08 09:33:00 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 16s. Last read position: chr2:215,433,440
INFO 2026-06-08 09:33:17 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 17s. Last read position: chr3:9,838,085
INFO 2026-06-08 09:33:34 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 16s. Last read position: chr3:57,583,897
INFO 2026-06-08 09:33:51 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 17s. Last read position: chr3:172,133,445
INFO 2026-06-08 09:34:08 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:14s. Time for last 10,000,000: 17s. Last read position: chr4:39,898,468
INFO 2026-06-08 09:34:25 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:31s. Time for last 10,000,000: 17s. Last read position: chr4:168,877,898
INFO 2026-06-08 09:34:42 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 17s. Last read position: chr5:83,521,481
INFO 2026-06-08 09:34:59 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 17s. Last read position: chr5:150,115,815
INFO 2026-06-08 09:35:16 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 17s. Last read position: chr6:2,245,347
INFO 2026-06-08 09:35:33 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:39s. Time for last 10,000,000: 16s. Last read position: chr6:32,016,819
INFO 2026-06-08 09:35:50 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 17s. Last read position: chr6:75,123,347
INFO 2026-06-08 09:36:07 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:13s. Time for last 10,000,000: 16s. Last read position: chr6:159,778,958
INFO 2026-06-08 09:36:24 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:30s. Time for last 10,000,000: 17s. Last read position: chr7:44,108,922
INFO 2026-06-08 09:36:41 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 16s. Last read position: chr7:94,425,782
INFO 2026-06-08 09:36:58 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 16s. Last read position: chr7:149,765,183
INFO 2026-06-08 09:37:15 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:21s. Time for last 10,000,000: 17s. Last read position: chr8:70,128,797
INFO 2026-06-08 09:37:32 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 16s. Last read position: chr8:143,929,705
INFO 2026-06-08 09:37:49 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:54s. Time for last 10,000,000: 16s. Last read position: chr9:96,641,805
INFO 2026-06-08 09:38:05 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:11s. Time for last 10,000,000: 16s. Last read position: chr9:134,036,276
INFO 2026-06-08 09:38:23 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:28s. Time for last 10,000,000: 17s. Last read position: chr10:43,116,684
INFO 2026-06-08 09:38:40 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:45s. Time for last 10,000,000: 16s. Last read position: chr10:102,160,311
INFO 2026-06-08 09:38:56 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:02s. Time for last 10,000,000: 16s. Last read position: chr11:1,757,508
INFO 2026-06-08 09:39:13 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:18s. Time for last 10,000,000: 16s. Last read position: chr11:61,309,915
INFO 2026-06-08 09:39:30 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:35s. Time for last 10,000,000: 16s. Last read position: chr11:67,611,456
INFO 2026-06-08 09:39:47 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:52s. Time for last 10,000,000: 17s. Last read position: chr11:125,085,128
INFO 2026-06-08 09:40:04 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:09s. Time for last 10,000,000: 17s. Last read position: chr12:49,034,230
INFO 2026-06-08 09:40:20 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:26s. Time for last 10,000,000: 16s. Last read position: chr12:57,488,109
INFO 2026-06-08 09:40:37 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:43s. Time for last 10,000,000: 17s. Last read position: chr12:122,489,441
INFO 2026-06-08 09:40:54 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 16s. Last read position: chr13:110,162,362
INFO 2026-06-08 09:41:11 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 17s. Last read position: chr14:67,887,143
INFO 2026-06-08 09:41:28 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 16s. Last read position: chr14:105,741,652
INFO 2026-06-08 09:41:45 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 16s. Last read position: chr15:63,641,623
INFO 2026-06-08 09:42:02 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:07s. Time for last 10,000,000: 16s. Last read position: chr16:552,297
INFO 2026-06-08 09:42:19 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:24s. Time for last 10,000,000: 17s. Last read position: chr16:16,263,564
INFO 2026-06-08 09:42:35 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 16s. Last read position: chr16:30,721,410
INFO 2026-06-08 09:42:52 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 16s. Last read position: chr16:88,717,114
INFO 2026-06-08 09:43:09 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 17s. Last read position: chr17:28,957,858
INFO 2026-06-08 09:43:26 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 16s. Last read position: chr17:44,436,479
INFO 2026-06-08 09:43:43 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 16s. Last read position: chr17:50,189,866
INFO 2026-06-08 09:44:00 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 16s. Last read position: chr17:50,195,944
INFO 2026-06-08 09:44:17 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:22s. Time for last 10,000,000: 17s. Last read position: chr17:64,758,550
INFO 2026-06-08 09:44:34 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 16s. Last read position: chr17:82,253,205
INFO 2026-06-08 09:44:50 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:56s. Time for last 10,000,000: 16s. Last read position: chr19:1,854,562
INFO 2026-06-08 09:45:07 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:12s. Time for last 10,000,000: 16s. Last read position: chr19:10,913,933
INFO 2026-06-08 09:45:23 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 16s. Last read position: chr19:19,342,829
INFO 2026-06-08 09:45:41 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:46s. Time for last 10,000,000: 17s. Last read position: chr19:44,749,017
INFO 2026-06-08 09:45:58 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:03s. Time for last 10,000,000: 17s. Last read position: chr19:55,669,091
INFO 2026-06-08 09:46:14 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:20s. Time for last 10,000,000: 16s. Last read position: chr20:47,183,288
INFO 2026-06-08 09:46:30 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:36s. Time for last 10,000,000: 16s. Last read position: chr21:34,859,527
INFO 2026-06-08 09:46:47 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:52s. Time for last 10,000,000: 16s. Last read position: chr22:28,795,596
INFO 2026-06-08 09:47:04 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:09s. Time for last 10,000,000: 16s. Last read position: chr22:49,904,168
INFO 2026-06-08 09:47:20 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:26s. Time for last 10,000,000: 16s. Last read position: chrX:71,554,554
INFO 2026-06-08 09:47:36 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:42s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:47:44 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:47:44 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:47:44 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:47:44 MarkDuplicates Before output close freeMemory: 203854464; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 09:47:44 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:47:44 MarkDuplicates After output close freeMemory: 104115264; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 09:47:44 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 46.45 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory