Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/4b9eba863bec4fe13bf0f869142975/659_bTo-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/cbf31c77e34a47600d13338bbb914d/659_bTo-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/25e67898e5c067ca4983fc4f483724/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/25e67898e5c067ca4983fc4f483724/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
ETV6--RASA3
starfusion
arriba
UBE2O--AANAT
starfusion
arriba
ANKRD46--STK3
starfusion
arriba
FHOD3--KIAA1328
starfusion
arriba
RIOK3--LINC01894
starfusion
arriba
ARPC3--LINC02827
starfusion
TLK2P1--AC110079.1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
TVP23C--CDRT4
arriba
LANCL2--LANCL2
arriba
AC092807.3--DDAH1
arriba
AKAP12--PHBP1
arriba
AKAP12--ULBP3
arriba
NR2F6--CILP2
arriba
AC010904.1--ZC3H7B
arriba
AC013460.1--ZC3H7B
arriba
TAF4B--B4GALT6
arriba
0%| | 0/26 [00:00<?, ?it/s]
Processing ETV6--RASA3: 0%| | 0/26 [00:00<?, ?it/s]
Processing ETV6--RASA3: 4%|▍ | 1/26 [00:00<00:02, 9.24it/s]
Processing UBE2O--AANAT: 4%|▍ | 1/26 [00:00<00:02, 9.24it/s]
Processing UBE2O--AANAT: 8%|▊ | 2/26 [00:00<00:02, 9.47it/s]
Processing ANKRD46--STK3: 8%|▊ | 2/26 [00:00<00:02, 9.47it/s]
Processing ANKRD46--STK3: 12%|█▏ | 3/26 [00:00<00:02, 9.53it/s]
Processing FHOD3--KIAA1328: 12%|█▏ | 3/26 [00:00<00:02, 9.53it/s]
Processing FHOD3--KIAA1328: 15%|█▌ | 4/26 [00:00<00:02, 9.58it/s]
Processing RIOK3--LINC01894: 15%|█▌ | 4/26 [00:00<00:02, 9.58it/s]
Processing RIOK3--LINC01894: 19%|█▉ | 5/26 [00:00<00:02, 9.61it/s]
Processing ARPC3--LINC02827: 19%|█▉ | 5/26 [00:00<00:02, 9.61it/s]
Processing ARPC3--LINC02827: 23%|██▎ | 6/26 [00:00<00:02, 9.62it/s]
Processing TLK2P1--AC110079.1: 23%|██▎ | 6/26 [00:00<00:02, 9.62it/s]
Processing TLK2P1--AC110079.1: 27%|██▋ | 7/26 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 27%|██▋ | 7/26 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 31%|███ | 8/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 31%|███ | 8/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 35%|███▍ | 9/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 35%|███▍ | 9/26 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 38%|███▊ | 10/26 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 38%|███▊ | 10/26 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 42%|████▏ | 11/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC5: 42%|████▏ | 11/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC5: 46%|████▌ | 12/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC4: 46%|████▌ | 12/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC4: 50%|█████ | 13/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 50%|█████ | 13/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 54%|█████▍ | 14/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 54%|█████▍ | 14/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 58%|█████▊ | 15/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 58%|█████▊ | 15/26 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 62%|██████▏ | 16/26 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 62%|██████▏ | 16/26 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 65%|██████▌ | 17/26 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 65%|██████▌ | 17/26 [00:01<00:00, 9.65it/s]
Processing TVP23C--CDRT4: 69%|██████▉ | 18/26 [00:01<00:00, 9.65it/s]
Processing LANCL2--LANCL2: 69%|██████▉ | 18/26 [00:01<00:00, 9.65it/s]
Processing LANCL2--LANCL2: 73%|███████▎ | 19/26 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 73%|███████▎ | 19/26 [00:01<00:00, 9.65it/s]
Processing AC092807.3--DDAH1: 77%|███████▋ | 20/26 [00:02<00:00, 9.65it/s]
Processing AKAP12--PHBP1: 77%|███████▋ | 20/26 [00:02<00:00, 9.65it/s]
Processing AKAP12--PHBP1: 81%|████████ | 21/26 [00:02<00:00, 9.65it/s]
Processing AKAP12--ULBP3: 81%|████████ | 21/26 [00:02<00:00, 9.65it/s]
Processing AKAP12--ULBP3: 85%|████████▍ | 22/26 [00:02<00:00, 9.65it/s]
Processing NR2F6--CILP2: 85%|████████▍ | 22/26 [00:02<00:00, 9.65it/s]
Processing NR2F6--CILP2: 88%|████████▊ | 23/26 [00:02<00:00, 9.65it/s]
Processing AC010904.1--ZC3H7B: 88%|████████▊ | 23/26 [00:02<00:00, 9.65it/s]
Processing AC010904.1--ZC3H7B: 92%|█████████▏| 24/26 [00:02<00:00, 9.65it/s]
Processing AC013460.1--ZC3H7B: 92%|█████████▏| 24/26 [00:02<00:00, 9.65it/s]
Processing AC013460.1--ZC3H7B: 96%|█████████▌| 25/26 [00:02<00:00, 9.65it/s]
Processing TAF4B--B4GALT6: 96%|█████████▌| 25/26 [00:02<00:00, 9.65it/s]
Processing TAF4B--B4GALT6: 100%|██████████| 26/26 [00:02<00:00, 9.65it/s]
Processing TAF4B--B4GALT6: 100%|██████████| 26/26 [00:02<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory