Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/4b9eba863bec4fe13bf0f869142975/659_bTo-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/cbf31c77e34a47600d13338bbb914d/659_bTo-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/25e67898e5c067ca4983fc4f483724/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/25e67898e5c067ca4983fc4f483724/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ETV6--RASA3
starfusion
arriba
UBE2O--AANAT
starfusion
arriba
ANKRD46--STK3
starfusion
arriba
FHOD3--KIAA1328
starfusion
arriba
RIOK3--LINC01894
starfusion
arriba
ARPC3--LINC02827
starfusion
TLK2P1--AC110079.1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
TVP23C--CDRT4
arriba
LANCL2--LANCL2
arriba
AC092807.3--DDAH1
arriba
AKAP12--PHBP1
arriba
AKAP12--ULBP3
arriba
NR2F6--CILP2
arriba
AC010904.1--ZC3H7B
arriba
AC013460.1--ZC3H7B
arriba
TAF4B--B4GALT6
arriba

  0%|          | 0/26 [00:00<?, ?it/s]
Processing ETV6--RASA3:   0%|          | 0/26 [00:00<?, ?it/s]
Processing ETV6--RASA3:   4%|▍         | 1/26 [00:00<00:02,  9.24it/s]
Processing UBE2O--AANAT:   4%|▍         | 1/26 [00:00<00:02,  9.24it/s]
Processing UBE2O--AANAT:   8%|▊         | 2/26 [00:00<00:02,  9.47it/s]
Processing ANKRD46--STK3:   8%|▊         | 2/26 [00:00<00:02,  9.47it/s]
Processing ANKRD46--STK3:  12%|█▏        | 3/26 [00:00<00:02,  9.53it/s]
Processing FHOD3--KIAA1328:  12%|█▏        | 3/26 [00:00<00:02,  9.53it/s]
Processing FHOD3--KIAA1328:  15%|█▌        | 4/26 [00:00<00:02,  9.58it/s]
Processing RIOK3--LINC01894:  15%|█▌        | 4/26 [00:00<00:02,  9.58it/s]
Processing RIOK3--LINC01894:  19%|█▉        | 5/26 [00:00<00:02,  9.61it/s]
Processing ARPC3--LINC02827:  19%|█▉        | 5/26 [00:00<00:02,  9.61it/s]
Processing ARPC3--LINC02827:  23%|██▎       | 6/26 [00:00<00:02,  9.62it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 6/26 [00:00<00:02,  9.62it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 7/26 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  27%|██▋       | 7/26 [00:00<00:01,  9.63it/s]  
Processing PCDHGB2--PCDHGA8:  31%|███       | 8/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  31%|███       | 8/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  35%|███▍      | 9/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  35%|███▍      | 9/26 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  38%|███▊      | 10/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  38%|███▊      | 10/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▏     | 11/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  42%|████▏     | 11/26 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGC5:  46%|████▌     | 12/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  46%|████▌     | 12/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  50%|█████     | 13/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  50%|█████     | 13/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  54%|█████▍    | 14/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  54%|█████▍    | 14/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  58%|█████▊    | 15/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  58%|█████▊    | 15/26 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  62%|██████▏   | 16/26 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  62%|██████▏   | 16/26 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGB7:  65%|██████▌   | 17/26 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  65%|██████▌   | 17/26 [00:01<00:00,  9.65it/s]   
Processing TVP23C--CDRT4:  69%|██████▉   | 18/26 [00:01<00:00,  9.65it/s]
Processing LANCL2--LANCL2:  69%|██████▉   | 18/26 [00:01<00:00,  9.65it/s]
Processing LANCL2--LANCL2:  73%|███████▎  | 19/26 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  73%|███████▎  | 19/26 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  77%|███████▋  | 20/26 [00:02<00:00,  9.65it/s]
Processing AKAP12--PHBP1:  77%|███████▋  | 20/26 [00:02<00:00,  9.65it/s]    
Processing AKAP12--PHBP1:  81%|████████  | 21/26 [00:02<00:00,  9.65it/s]
Processing AKAP12--ULBP3:  81%|████████  | 21/26 [00:02<00:00,  9.65it/s]
Processing AKAP12--ULBP3:  85%|████████▍ | 22/26 [00:02<00:00,  9.65it/s]
Processing NR2F6--CILP2:  85%|████████▍ | 22/26 [00:02<00:00,  9.65it/s] 
Processing NR2F6--CILP2:  88%|████████▊ | 23/26 [00:02<00:00,  9.65it/s]
Processing AC010904.1--ZC3H7B:  88%|████████▊ | 23/26 [00:02<00:00,  9.65it/s]
Processing AC010904.1--ZC3H7B:  92%|█████████▏| 24/26 [00:02<00:00,  9.65it/s]
Processing AC013460.1--ZC3H7B:  92%|█████████▏| 24/26 [00:02<00:00,  9.65it/s]
Processing AC013460.1--ZC3H7B:  96%|█████████▌| 25/26 [00:02<00:00,  9.65it/s]
Processing TAF4B--B4GALT6:  96%|█████████▌| 25/26 [00:02<00:00,  9.65it/s]    
Processing TAF4B--B4GALT6: 100%|██████████| 26/26 [00:02<00:00,  9.65it/s]
Processing TAF4B--B4GALT6: 100%|██████████| 26/26 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory