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Filename
659_bTo-T1-TRNA-1_B23WHTKLT4_1.fusions.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/25e67898e5c067ca4983fc4f483724/659_bTo-T1-TRNA-1_B23WHTKLT4_1.fusions.csv
Size
6.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bTo-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

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Fusion Databases Score Explained score arriba starfusion
ETV6--RASA3 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr12:11650160#chr13:114000932,reading-frame: out-of-frame,type: translocation,split_reads1: 60,split_reads2: 78,discordant_mates: 2,coverage1: 7882,coverage2: 1995,confidence: high position: chr12:11650160:+#chr13:114000932:-,junction_reads: 144,spanning_reads: 2,ffmp: 0.4912
UBE2O--AANAT 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr17:76452725#chr17:76468672,reading-frame: in-frame,type: inversion,split_reads1: 21,split_reads2: 29,discordant_mates: 1,coverage1: 1280,coverage2: 506,confidence: high position: chr17:76452725:-#chr17:76468672:+,junction_reads: 53,spanning_reads: 1,ffmp: 0.1824
ANKRD46--STK3 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr8:100527845#chr8:98456000,reading-frame: out-of-frame,type: deletion,split_reads1: 22,split_reads2: 16,discordant_mates: 1,coverage1: 490,coverage2: 706,confidence: high position: chr8:100527845:-#chr8:98456000:-,junction_reads: 45,spanning_reads: 1,ffmp: 0.1554
FHOD3--KIAA1328 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr18:36693423#chr18:37222017,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 19,discordant_mates: 2,coverage1: 1172,coverage2: 213,confidence: high position: chr18:36693423:+#chr18:37222017:+,junction_reads: 41,spanning_reads: 2,ffmp: 0.1453
RIOK3--LINC01894 0.125 0.5 * (0.125 + 0.125) + 0.5 * () position: chr18:23479424#chr18:24933647,reading-frame: out-of-frame,type: inversion,split_reads1: 22,split_reads2: 2,discordant_mates: 0,coverage1: 4643,coverage2: 4,confidence: high position: chr18:23479424:+#chr18:24933647:-,junction_reads: 26,spanning_reads: 0,ffmp: 0.0878
ARPC3--LINC02827 0.062 0.5 * (0.125) + 0.5 * () position: chr12:110445452:-#chr12:3319617:+,junction_reads: 24,spanning_reads: 1,ffmp: 0.0845
TLK2P1--AC110079.1 0.062 0.5 * (0.125) + 0.5 * () position: chr17:34039043:-#chr4:118595912:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0349
PCDHGB2--PCDHGA8 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGB6 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGA11 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGA10 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGC5 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGC4 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGC3 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGA9 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGA12 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
PCDHGB2--PCDHGB7 0.062 0.5 * (0.125) + 0.5 * () position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 97,split_reads2: 65,discordant_mates: 2,coverage1: 1178,coverage2: 10972,confidence: high
TVP23C--CDRT4 FusionGDB2 0.062 0.5 * (0.125) + 0.5 * (0.000) position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 24,split_reads2: 18,discordant_mates: 2,coverage1: 561,coverage2: 333,confidence: high
LANCL2--LANCL2 FusionGDB2 0.062 0.5 * (0.125) + 0.5 * (0.000) position: chr7:55428447#chr7:55425605,reading-frame: out-of-frame,type: inversion/3'-3',split_reads1: 19,split_reads2: 13,discordant_mates: 0,coverage1: 585,coverage2: 17,confidence: high
AC092807.3--DDAH1 0.062 0.5 * (0.125) + 0.5 * () position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 6,split_reads2: 19,discordant_mates: 0,coverage1: 79,coverage2: 306,confidence: high
AKAP12--PHBP1 0.062 0.5 * (0.125) + 0.5 * () position: chr6:151240724#chr6:150052228,reading-frame: out-of-frame,type: duplication,split_reads1: 16,split_reads2: 8,discordant_mates: 0,coverage1: 10504,coverage2: 28,confidence: high
AKAP12--ULBP3 0.062 0.5 * (0.125) + 0.5 * () position: chr6:151240724#chr6:150052228,reading-frame: out-of-frame,type: duplication,split_reads1: 16,split_reads2: 8,discordant_mates: 0,coverage1: 10504,coverage2: 28,confidence: high
NR2F6--CILP2 0.062 0.5 * (0.125) + 0.5 * () position: chr19:17240671#chr19:19541276,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 15,split_reads2: 3,discordant_mates: 0,coverage1: 5909,coverage2: 231,confidence: high
AC010904.1--ZC3H7B 0.062 0.5 * (0.125) + 0.5 * () position: chr2:7338304#chr22:41320655,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 12,discordant_mates: 0,coverage1: 3,coverage2: 1525,confidence: high
AC013460.1--ZC3H7B 0.062 0.5 * (0.125) + 0.5 * () position: chr2:7338304#chr22:41320655,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 12,discordant_mates: 0,coverage1: 3,coverage2: 1525,confidence: high
TAF4B--B4GALT6 0.062 0.5 * (0.125) + 0.5 * () position: chr18:26227276#chr18:31633636,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 4,split_reads2: 6,discordant_mates: 0,coverage1: 402,coverage2: 7,confidence: high
27 rows