Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGW-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bGW-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:40:20.972 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:40:20 GMT 2026] MarkDuplicates --INPUT 659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGW-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bGW-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:40:20 GMT 2026] Executing as ?@nf-a1b691afbd1598b838aed1ca8394c03b-4cc53-mgxjz on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:40:21 MarkDuplicates Start of doWork freeMemory: 105828568; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:40:21 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:40:21 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,053,834
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 3258 as yet unmatched pairs. 1497 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,482,211
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 4477 as yet unmatched pairs. 617 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:3,498,364
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 5981 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,359,770
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 7689 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:10,647,945
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 9012 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:13,583,852
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 10645 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:16,624,272
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 12018 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,184,117
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 13843 as yet unmatched pairs. 509 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:20,980,343
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 15133 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:21,850,457
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 17016 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:22,647,335
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 18505 as yet unmatched pairs. 517 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:24,503,054
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 19445 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:26,775,144
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 20970 as yet unmatched pairs. 342 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:28,743,456
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 22385 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:31,683,959
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 24033 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:32,893,606
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 25044 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:36,177,920
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 27611 as yet unmatched pairs. 711 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:39,387,344
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 28757 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:42,658,901
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 30384 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,837
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 32328 as yet unmatched pairs. 702 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:45,511,352
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 34255 as yet unmatched pairs. 1096 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:51,288,213
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 34936 as yet unmatched pairs. 276 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:55,069,015
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 36348 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:67,424,230
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 38711 as yet unmatched pairs. 1149 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:88,807,531
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 39096 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:100,285,259
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 40264 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:109,923,408
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 41628 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:113,940,811
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 43144 as yet unmatched pairs. 518 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:116,949,194
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 44766 as yet unmatched pairs. 707 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,332
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 46628 as yet unmatched pairs. 1132 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:146,115,311
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 46430 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,365
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 47886 as yet unmatched pairs. 696 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:150,268,026
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 50641 as yet unmatched pairs. 2417 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:151,168,984
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 49891 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:153,607,461
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 52385 as yet unmatched pairs. 1054 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:154,172,964
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 55877 as yet unmatched pairs. 3146 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:154,988,357
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 54524 as yet unmatched pairs. 463 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:155,201,448
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 55664 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:156,055,306
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 56967 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,200,033
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 58695 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:159,018,327
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 60119 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:161,193,359
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 61828 as yet unmatched pairs. 425 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:166,849,946
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 63310 as yet unmatched pairs. 565 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:171,513,051
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 64562 as yet unmatched pairs. 238 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:180,031,404
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 65869 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:183,228,562
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 68088 as yet unmatched pairs. 731 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:193,076,021
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 68960 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:201,623,562
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 70470 as yet unmatched pairs. 276 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:203,223,632
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 71735 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:205,268,948
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 73021 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:207,752,202
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 77787 as yet unmatched pairs. 3491 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:214,383,813
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 76205 as yet unmatched pairs. 327 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:224,434,343
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 77396 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:228,097,187
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 80599 as yet unmatched pairs. 1845 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:230,178,234
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 80804 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:235,551,100
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 83132 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:244,864,152
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 85751 as yet unmatched pairs. 1687 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:9,297,409
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 86055 as yet unmatched pairs. 85764 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:20,202,923
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 87628 as yet unmatched pairs. 87326 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:26,970,770
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 88434 as yet unmatched pairs. 88128 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:27,442,544
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 90716 as yet unmatched pairs. 90397 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:32,575,347
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 91819 as yet unmatched pairs. 91495 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 431933 as yet unmatched pairs. 78307 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 774920 as yet unmatched pairs. 65680 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:36,442,706
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 827210 as yet unmatched pairs. 64105 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,635
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 825906 as yet unmatched pairs. 62794 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:47,374,003
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 826215 as yet unmatched pairs. 63092 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:54,659,176
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 823447 as yet unmatched pairs. 60324 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:61,868,450
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 820632 as yet unmatched pairs. 57500 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:69,326,156
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 821689 as yet unmatched pairs. 58553 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:73,243,052
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 818400 as yet unmatched pairs. 55261 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:74,502,642
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 816648 as yet unmatched pairs. 53507 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:86,031,458
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 815343 as yet unmatched pairs. 52202 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:96,301,642
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 814145 as yet unmatched pairs. 51002 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:101,308,446
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 812819 as yet unmatched pairs. 49671 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,542
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 811788 as yet unmatched pairs. 48640 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:112,389,087
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 810419 as yet unmatched pairs. 47269 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:126,656,274
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 809347 as yet unmatched pairs. 46189 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:134,254,390
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 807822 as yet unmatched pairs. 44662 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:151,590,085
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 807376 as yet unmatched pairs. 44213 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:159,163,365
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 805690 as yet unmatched pairs. 42524 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:171,522,511
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 804436 as yet unmatched pairs. 41260 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:177,521,330
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 802795 as yet unmatched pairs. 39609 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:178,557,841
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 801794 as yet unmatched pairs. 38603 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:178,588,816
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 800566 as yet unmatched pairs. 37375 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:178,635,991
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 799491 as yet unmatched pairs. 36290 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:178,710,856
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 798587 as yet unmatched pairs. 35383 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:178,782,938
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 797984 as yet unmatched pairs. 34780 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:188,985,733
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 799438 as yet unmatched pairs. 36234 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:188,999,530
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 799938 as yet unmatched pairs. 36734 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:189,033,904
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 792985 as yet unmatched pairs. 29776 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:191,360,648
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 790993 as yet unmatched pairs. 27778 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:201,380,816
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 790161 as yet unmatched pairs. 26935 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:208,355,209
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 788324 as yet unmatched pairs. 25094 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,983
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 798440 as yet unmatched pairs. 35208 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,337
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 799483 as yet unmatched pairs. 36251 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,202
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 799851 as yet unmatched pairs. 36617 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,857
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 797288 as yet unmatched pairs. 34054 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,335
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 792477 as yet unmatched pairs. 29243 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,307
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 795934 as yet unmatched pairs. 32693 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,155
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 785441 as yet unmatched pairs. 22199 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,907
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 787113 as yet unmatched pairs. 23871 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:216,678,220
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 778850 as yet unmatched pairs. 15608 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:217,906,334
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 778279 as yet unmatched pairs. 15036 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:219,182,522
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 774780 as yet unmatched pairs. 11536 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:219,461,973
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 772738 as yet unmatched pairs. 9493 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:227,340,321
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 771344 as yet unmatched pairs. 8095 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:231,708,542
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 769636 as yet unmatched pairs. 6387 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:237,339,094
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 768962 as yet unmatched pairs. 5706 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:237,376,924
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 769143 as yet unmatched pairs. 5887 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:240,618,972
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 765072 as yet unmatched pairs. 1803 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr3:4,982,940
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 763857 as yet unmatched pairs. 41406 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:11,564,873
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 762639 as yet unmatched pairs. 40186 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:15,589,324
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 760190 as yet unmatched pairs. 37736 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr3:33,120,383
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 758869 as yet unmatched pairs. 36412 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,963
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 759321 as yet unmatched pairs. 36863 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:43,577,127
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 755767 as yet unmatched pairs. 33304 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:47,163,877
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 754131 as yet unmatched pairs. 31668 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:48,466,874
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 753003 as yet unmatched pairs. 30540 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:49,099,568
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 751151 as yet unmatched pairs. 28687 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:49,676,665
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 750426 as yet unmatched pairs. 27956 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:51,388,991
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 748159 as yet unmatched pairs. 25689 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr3:52,507,626
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 746688 as yet unmatched pairs. 24218 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:57,692,840
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 745071 as yet unmatched pairs. 22601 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr3:62,203,646
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 744379 as yet unmatched pairs. 21909 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr3:88,058,137
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 742769 as yet unmatched pairs. 20289 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:101,849,715
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 741728 as yet unmatched pairs. 19248 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:119,498,720
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 739869 as yet unmatched pairs. 17387 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:123,666,252
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 739295 as yet unmatched pairs. 16800 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:127,017,783
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 737188 as yet unmatched pairs. 14690 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:129,257,736
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 736039 as yet unmatched pairs. 13540 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:134,371,391
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 733950 as yet unmatched pairs. 11451 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:148,883,771
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 732375 as yet unmatched pairs. 9875 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:158,802,167
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 731838 as yet unmatched pairs. 9337 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:177,026,399
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 730135 as yet unmatched pairs. 7621 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:184,303,003
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 729190 as yet unmatched pairs. 6669 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:186,785,083
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 727970 as yet unmatched pairs. 5448 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:193,662,899
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 725951 as yet unmatched pairs. 3425 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:195,779,893
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 728187 as yet unmatched pairs. 5650 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,784,954
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 729283 as yet unmatched pairs. 6746 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:196,885,426
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 723382 as yet unmatched pairs. 842 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:1,167,605
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 723257 as yet unmatched pairs. 24218 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:2,875,921
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 719923 as yet unmatched pairs. 20884 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:6,621,265
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 717896 as yet unmatched pairs. 18856 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:10,099,099
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 717059 as yet unmatched pairs. 17998 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr4:30,721,465
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 714626 as yet unmatched pairs. 15555 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr4:48,025,270
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 712977 as yet unmatched pairs. 13905 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:57,040,822
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 714976 as yet unmatched pairs. 15903 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:73,741,660
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 716504 as yet unmatched pairs. 17414 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:76,756,566
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 708661 as yet unmatched pairs. 9569 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:87,473,791
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 707718 as yet unmatched pairs. 8626 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:105,234,192
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 705936 as yet unmatched pairs. 6840 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,755
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 707648 as yet unmatched pairs. 8550 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:140,622,574
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 703402 as yet unmatched pairs. 4296 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:153,788,341
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 704940 as yet unmatched pairs. 5829 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:169,706,873
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 700908 as yet unmatched pairs. 1793 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr4:186,636,221
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 700078 as yet unmatched pairs. 961 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr5:6,607,231
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 697988 as yet unmatched pairs. 29783 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:14,419,857
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 698144 as yet unmatched pairs. 29939 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:32,364,252
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 695113 as yet unmatched pairs. 26904 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:41,805,614
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 693604 as yet unmatched pairs. 25395 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:65,151,843
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 692302 as yet unmatched pairs. 24088 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:74,635,931
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 692079 as yet unmatched pairs. 23865 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,155
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 692805 as yet unmatched pairs. 24588 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:96,663,094
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 689757 as yet unmatched pairs. 21538 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr5:119,475,846
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 687944 as yet unmatched pairs. 19722 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:132,825,371
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 685786 as yet unmatched pairs. 17564 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:137,692,323
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 684146 as yet unmatched pairs. 15924 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:139,681,038
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 683101 as yet unmatched pairs. 14879 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:141,528,516
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 682185 as yet unmatched pairs. 13953 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:149,550,141
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 680671 as yet unmatched pairs. 12436 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,182
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 687854 as yet unmatched pairs. 19611 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:150,656,828
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 678109 as yet unmatched pairs. 9866 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:154,802,177
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 676187 as yet unmatched pairs. 7941 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,743
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 676999 as yet unmatched pairs. 8746 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:176,887,042
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 673085 as yet unmatched pairs. 4831 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:178,727,045
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 671472 as yet unmatched pairs. 3216 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,011
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 671289 as yet unmatched pairs. 3015 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:181,239,119
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 670653 as yet unmatched pairs. 2364 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:7,230,933
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 667734 as yet unmatched pairs. 41980 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:14,135,371
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 665510 as yet unmatched pairs. 39749 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:26,056,037
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 664525 as yet unmatched pairs. 38762 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:27,831,390
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 664047 as yet unmatched pairs. 38283 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:29,945,461
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 668589 as yet unmatched pairs. 42824 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:30,741,690
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 660998 as yet unmatched pairs. 35220 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,530
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 659879 as yet unmatched pairs. 34101 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:31,667,910
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 657580 as yet unmatched pairs. 31802 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,347
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 656331 as yet unmatched pairs. 30553 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:31,827,951
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 659685 as yet unmatched pairs. 33907 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,330
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 662460 as yet unmatched pairs. 36682 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,991,762
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 653977 as yet unmatched pairs. 28199 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:32,443,355
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 652822 as yet unmatched pairs. 27039 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,360
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 653257 as yet unmatched pairs. 27474 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:34,246,779
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 649566 as yet unmatched pairs. 23782 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr6:36,972,704
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 650202 as yet unmatched pairs. 24418 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr6:42,978,440
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 646283 as yet unmatched pairs. 20495 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:44,134,702
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 644393 as yet unmatched pairs. 18604 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:52,506,052
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 643095 as yet unmatched pairs. 17305 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:70,858,015
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 642066 as yet unmatched pairs. 16274 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:75,308,751
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 640610 as yet unmatched pairs. 14812 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:89,380,168
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 639220 as yet unmatched pairs. 13420 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:109,368,851
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 640484 as yet unmatched pairs. 14683 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:116,279,303
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 636458 as yet unmatched pairs. 10649 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:130,890,354
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 635360 as yet unmatched pairs. 9550 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:138,107,294
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 633484 as yet unmatched pairs. 7671 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:149,684,187
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 632254 as yet unmatched pairs. 6440 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:157,292,855
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 630879 as yet unmatched pairs. 5065 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:159,234,302
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 629761 as yet unmatched pairs. 3940 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:166,365,407
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 627865 as yet unmatched pairs. 2044 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:169,668,053
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 626195 as yet unmatched pairs. 374 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr7:2,235,170
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 624477 as yet unmatched pairs. 50997 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,553
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 623838 as yet unmatched pairs. 50357 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,762
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 630330 as yet unmatched pairs. 56849 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,560
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 632056 as yet unmatched pairs. 58575 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:5,741,349
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 618020 as yet unmatched pairs. 44538 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:18,647,840
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 616444 as yet unmatched pairs. 42960 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:29,936,465
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 614971 as yet unmatched pairs. 41485 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:39,997,494
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 613563 as yet unmatched pairs. 40075 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:44,111,977
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 613238 as yet unmatched pairs. 39742 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:45,103,366
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 610971 as yet unmatched pairs. 37474 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:56,051,972
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 608934 as yet unmatched pairs. 35427 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:73,175,511
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 607574 as yet unmatched pairs. 34066 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:74,063,650
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 606521 as yet unmatched pairs. 33012 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:75,563,048
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 604934 as yet unmatched pairs. 31425 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:76,330,205
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 604227 as yet unmatched pairs. 30717 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:92,108,515
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 601981 as yet unmatched pairs. 28466 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:94,409,345
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 609307 as yet unmatched pairs. 35792 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:94,420,597
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 602236 as yet unmatched pairs. 28717 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,829
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 597965 as yet unmatched pairs. 24446 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:99,648,249
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 595801 as yet unmatched pairs. 22282 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,676,318
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 595673 as yet unmatched pairs. 22154 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,704
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 593071 as yet unmatched pairs. 19552 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,112
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 593134 as yet unmatched pairs. 19615 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,662
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 595422 as yet unmatched pairs. 21903 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,231
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 593763 as yet unmatched pairs. 20243 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,930
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 596186 as yet unmatched pairs. 22666 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr7:101,001,330
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 595737 as yet unmatched pairs. 22217 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,913
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 590462 as yet unmatched pairs. 16942 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr7:102,353,200
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 589287 as yet unmatched pairs. 15767 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:107,195,885
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 588428 as yet unmatched pairs. 14891 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:116,740,960
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 588786 as yet unmatched pairs. 15235 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:127,702,452
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 586882 as yet unmatched pairs. 13330 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:128,847,744
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 585857 as yet unmatched pairs. 12301 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr7:134,960,581
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 586855 as yet unmatched pairs. 13292 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr7:140,459,204
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 582274 as yet unmatched pairs. 8710 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:143,860,339
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 580381 as yet unmatched pairs. 6817 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:149,838,478
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 579475 as yet unmatched pairs. 5911 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:150,861,130
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 577772 as yet unmatched pairs. 4202 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:151,471,394
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 577369 as yet unmatched pairs. 3792 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 64s. Last read position: chr7:158,316,902
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 574551 as yet unmatched pairs. 972 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr8:11,849,115
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 574266 as yet unmatched pairs. 34805 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:22,606,921
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 571924 as yet unmatched pairs. 32462 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:28,890,654
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 569735 as yet unmatched pairs. 30269 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:37,830,896
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 568792 as yet unmatched pairs. 29316 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:38,843,369
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 568340 as yet unmatched pairs. 28864 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:47,858,901
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 565093 as yet unmatched pairs. 25610 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:65,707,244
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 563202 as yet unmatched pairs. 23716 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:73,946,602
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 562176 as yet unmatched pairs. 22686 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:94,518,995
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 560859 as yet unmatched pairs. 21366 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:100,924,961
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 561282 as yet unmatched pairs. 21789 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:119,221,661
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 560836 as yet unmatched pairs. 21334 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,383
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 558400 as yet unmatched pairs. 18883 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:140,557,111
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 555417 as yet unmatched pairs. 15898 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,810,920
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 553901 as yet unmatched pairs. 14380 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,846
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 554664 as yet unmatched pairs. 15143 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,919
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 554280 as yet unmatched pairs. 14758 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,808
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 558180 as yet unmatched pairs. 18658 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr8:143,861,570
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 551682 as yet unmatched pairs. 12160 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,365
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 559258 as yet unmatched pairs. 19736 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,142
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 559517 as yet unmatched pairs. 19995 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,898
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 548634 as yet unmatched pairs. 9112 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,832
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 553247 as yet unmatched pairs. 13725 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,713
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 547483 as yet unmatched pairs. 7961 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,427
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 548103 as yet unmatched pairs. 8581 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,293
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 551096 as yet unmatched pairs. 11574 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,109
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 544769 as yet unmatched pairs. 5240 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:144,291,794
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 541669 as yet unmatched pairs. 2135 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:710,999
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 540114 as yet unmatched pairs. 34233 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:15,527,596
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 538053 as yet unmatched pairs. 32163 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:33,256,837
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 536917 as yet unmatched pairs. 31026 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:35,102,764
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 535194 as yet unmatched pairs. 29290 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:35,717,759
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 534473 as yet unmatched pairs. 28568 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:65,708,949
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 532124 as yet unmatched pairs. 26215 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:78,328,109
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 530753 as yet unmatched pairs. 24842 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:92,247,507
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 529742 as yet unmatched pairs. 23826 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:96,360,198
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 528763 as yet unmatched pairs. 22847 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:104,829,006
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 526705 as yet unmatched pairs. 20788 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:111,451,488
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 525525 as yet unmatched pairs. 19606 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:115,078,081
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 524150 as yet unmatched pairs. 18231 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:122,214,296
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 522016 as yet unmatched pairs. 16097 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:127,449,677
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 523526 as yet unmatched pairs. 17595 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:128,169,192
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 519357 as yet unmatched pairs. 13426 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:128,722,491
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 518385 as yet unmatched pairs. 12452 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:130,494,899
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 517066 as yet unmatched pairs. 11129 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:132,330,274
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 514670 as yet unmatched pairs. 8731 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:134,727,308
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 513352 as yet unmatched pairs. 7413 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:135,907,080
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 511513 as yet unmatched pairs. 5574 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr9:136,791,744
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 511098 as yet unmatched pairs. 5156 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:137,108,439
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 508665 as yet unmatched pairs. 2723 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:137,614,685
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 506950 as yet unmatched pairs. 1008 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:5,766,019
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 505698 as yet unmatched pairs. 28507 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,409
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 505239 as yet unmatched pairs. 28040 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:27,205,223
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 502496 as yet unmatched pairs. 25297 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,157
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 504676 as yet unmatched pairs. 27476 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:35,569,129
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 499852 as yet unmatched pairs. 22652 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:49,107,944
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 498238 as yet unmatched pairs. 21037 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:69,104,022
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 497051 as yet unmatched pairs. 19850 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:73,541,701
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 495496 as yet unmatched pairs. 18295 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:76,887,293
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 494556 as yet unmatched pairs. 17353 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,376
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 506091 as yet unmatched pairs. 28872 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,275
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 493152 as yet unmatched pairs. 15928 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:79,349,680
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 494739 as yet unmatched pairs. 17515 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:80,163,554
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 490725 as yet unmatched pairs. 13488 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:84,371,638
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 487238 as yet unmatched pairs. 10001 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:91,827,096
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 486040 as yet unmatched pairs. 8803 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:96,944,139
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 484709 as yet unmatched pairs. 7472 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:101,810,238
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 483471 as yet unmatched pairs. 6233 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:104,034,311
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 482019 as yet unmatched pairs. 4780 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:118,754,685
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 480232 as yet unmatched pairs. 2993 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:122,602,056
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 479264 as yet unmatched pairs. 2025 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:133,292,684
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 477866 as yet unmatched pairs. 622 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr11:319,979
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 489894 as yet unmatched pairs. 71560 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:621,874
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 475300 as yet unmatched pairs. 56961 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:1,085,816
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 472816 as yet unmatched pairs. 54477 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,934,599
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 471873 as yet unmatched pairs. 53534 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:4,091,297
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 470369 as yet unmatched pairs. 52030 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:7,995,058
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 468689 as yet unmatched pairs. 50350 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:10,804,146
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 467666 as yet unmatched pairs. 49326 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:17,119,267
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 465329 as yet unmatched pairs. 46989 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:33,341,571
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 464226 as yet unmatched pairs. 45886 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:44,108,021
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 462751 as yet unmatched pairs. 44410 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr11:46,665,449
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 461579 as yet unmatched pairs. 43237 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:57,308,426
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 460593 as yet unmatched pairs. 42251 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:57,815,949
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 459452 as yet unmatched pairs. 41110 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:61,741,177
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 456742 as yet unmatched pairs. 38399 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:62,519,340
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 455981 as yet unmatched pairs. 37637 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,771
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 456230 as yet unmatched pairs. 37886 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:62,532,600
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 454676 as yet unmatched pairs. 36325 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:62,676,561
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 454029 as yet unmatched pairs. 35678 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:63,997,417
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 450369 as yet unmatched pairs. 32018 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:64,345,003
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 448038 as yet unmatched pairs. 29680 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,733
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 451036 as yet unmatched pairs. 32678 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:65,552,871
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 445895 as yet unmatched pairs. 27519 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:65,658,742
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 445120 as yet unmatched pairs. 26738 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:66,210,367
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 440940 as yet unmatched pairs. 22558 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:66,863,953
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 439103 as yet unmatched pairs. 20721 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:67,506,955
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 438645 as yet unmatched pairs. 20263 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:68,439,863
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 435682 as yet unmatched pairs. 17300 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:70,435,549
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 434779 as yet unmatched pairs. 16392 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:72,757,866
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 432686 as yet unmatched pairs. 14299 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:75,443,206
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 431272 as yet unmatched pairs. 12885 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:83,168,972
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 429907 as yet unmatched pairs. 11519 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:96,091,916
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 428292 as yet unmatched pairs. 9904 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:108,331,489
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 426771 as yet unmatched pairs. 8382 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:117,195,779
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 425661 as yet unmatched pairs. 7272 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:118,597,768
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 424855 as yet unmatched pairs. 6466 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:119,312,527
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 423000 as yet unmatched pairs. 4611 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,160
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 422980 as yet unmatched pairs. 4586 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:130,126,786
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 420303 as yet unmatched pairs. 1906 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr12:883,030
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 418202 as yet unmatched pairs. 44002 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:6,327,781
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 416969 as yet unmatched pairs. 42763 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:6,769,974
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 416304 as yet unmatched pairs. 42096 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:7,081,276
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 413983 as yet unmatched pairs. 39770 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:10,160,796
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 412446 as yet unmatched pairs. 38230 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:14,949,870
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 411560 as yet unmatched pairs. 37344 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:32,850,766
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 409513 as yet unmatched pairs. 35295 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:47,865,108
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 408796 as yet unmatched pairs. 34578 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:49,104,469
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 406868 as yet unmatched pairs. 32649 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:49,758,397
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 409649 as yet unmatched pairs. 35430 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,889
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 405560 as yet unmatched pairs. 31335 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,534
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 405245 as yet unmatched pairs. 31020 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,416
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 401967 as yet unmatched pairs. 27742 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:54,347,814
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 401237 as yet unmatched pairs. 27009 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:56,096,807
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 399047 as yet unmatched pairs. 24819 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr12:56,300,221
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 397247 as yet unmatched pairs. 23019 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,038,044
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 396235 as yet unmatched pairs. 22003 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:57,166,117
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 396480 as yet unmatched pairs. 22245 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr12:57,210,306
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 394061 as yet unmatched pairs. 19826 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:57,751,241
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 392923 as yet unmatched pairs. 18688 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:69,258,706
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 390745 as yet unmatched pairs. 16510 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:76,858,959
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 389239 as yet unmatched pairs. 15004 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:93,641,168
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 387829 as yet unmatched pairs. 13593 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:101,780,107
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 386618 as yet unmatched pairs. 12382 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,988
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 385330 as yet unmatched pairs. 11094 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:111,518,407
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 383734 as yet unmatched pairs. 9480 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:113,290,964
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 382415 as yet unmatched pairs. 8161 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:120,196,908
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 383020 as yet unmatched pairs. 8765 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:121,809,798
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 379339 as yet unmatched pairs. 5084 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr12:123,590,426
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 378316 as yet unmatched pairs. 4060 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:125,016,450
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 377004 as yet unmatched pairs. 2748 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:132,780,795
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 374825 as yet unmatched pairs. 568 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr13:24,434,698
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 373911 as yet unmatched pairs. 13931 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr13:32,149,793
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 371989 as yet unmatched pairs. 12008 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr13:42,214,565
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 370751 as yet unmatched pairs. 10766 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:48,258,855
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 370963 as yet unmatched pairs. 10976 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:73,075,790
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 369864 as yet unmatched pairs. 9877 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr13:97,985,556
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 366599 as yet unmatched pairs. 6612 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr13:109,782,815
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 365547 as yet unmatched pairs. 5560 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr13:110,308,082
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 365195 as yet unmatched pairs. 5208 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr13:111,217,817
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 361707 as yet unmatched pairs. 1715 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:20,387,912
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 359991 as yet unmatched pairs. 28752 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:22,601,667
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 358394 as yet unmatched pairs. 27155 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:23,033,627
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 358176 as yet unmatched pairs. 26937 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:24,166,121
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 355949 as yet unmatched pairs. 24710 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:32,091,799
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 353907 as yet unmatched pairs. 22668 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,679
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 357630 as yet unmatched pairs. 26391 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:54,427,801
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 351435 as yet unmatched pairs. 20188 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:60,108,024
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 349809 as yet unmatched pairs. 18560 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:67,143,377
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 348319 as yet unmatched pairs. 17070 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:69,122,350
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 347132 as yet unmatched pairs. 15882 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:74,484,427
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 346664 as yet unmatched pairs. 15414 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 3s. Last read position: chr14:75,280,902
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 347286 as yet unmatched pairs. 16035 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:90,401,299
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 344370 as yet unmatched pairs. 13118 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:95,191,684
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 341112 as yet unmatched pairs. 9860 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:102,020,024
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 339808 as yet unmatched pairs. 8553 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:103,386,048
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 337997 as yet unmatched pairs. 6742 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:104,775,697
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 336553 as yet unmatched pairs. 5298 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:104,944,395
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 339476 as yet unmatched pairs. 8221 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:104,951,936
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 335887 as yet unmatched pairs. 4632 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,242
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 332746 as yet unmatched pairs. 1491 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:22,874,615
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 331657 as yet unmatched pairs. 29904 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr15:32,730,745
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 333188 as yet unmatched pairs. 31432 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:34,365,103
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 330359 as yet unmatched pairs. 28603 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:40,036,455
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 327837 as yet unmatched pairs. 26081 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:41,535,604
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 325562 as yet unmatched pairs. 23802 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:43,524,248
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 324137 as yet unmatched pairs. 22376 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,870
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 327163 as yet unmatched pairs. 25402 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:45,673,772
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 321688 as yet unmatched pairs. 19917 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:52,211,771
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 319960 as yet unmatched pairs. 18189 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:60,349,156
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 320542 as yet unmatched pairs. 18770 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:63,156,411
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 317452 as yet unmatched pairs. 15677 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:65,729,644
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 315647 as yet unmatched pairs. 13871 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:69,455,227
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 317338 as yet unmatched pairs. 15562 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:73,587,607
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 313503 as yet unmatched pairs. 11727 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:74,842,086
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 311198 as yet unmatched pairs. 9422 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:76,283,782
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 310464 as yet unmatched pairs. 8688 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:80,925,696
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 307994 as yet unmatched pairs. 6218 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr15:88,135,373
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 306363 as yet unmatched pairs. 4581 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr15:90,223,607
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 305734 as yet unmatched pairs. 3952 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:92,941,842
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 303704 as yet unmatched pairs. 1922 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:101,281,560
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 302071 as yet unmatched pairs. 288 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr16:547,684
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 301318 as yet unmatched pairs. 51582 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:786,062
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 298602 as yet unmatched pairs. 48866 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:1,777,385
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 296866 as yet unmatched pairs. 47130 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:2,109,171
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 294529 as yet unmatched pairs. 44793 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,571
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 293330 as yet unmatched pairs. 43594 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:3,021,676
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 292177 as yet unmatched pairs. 42441 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:4,334,938
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 290100 as yet unmatched pairs. 40364 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:8,900,588
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 288614 as yet unmatched pairs. 38878 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:14,878,728
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 286618 as yet unmatched pairs. 36882 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:15,704,079
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 290420 as yet unmatched pairs. 40684 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:15,747,911
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 288578 as yet unmatched pairs. 38842 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr16:16,310,483
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 283230 as yet unmatched pairs. 33494 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,859
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 283334 as yet unmatched pairs. 33598 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:18,832,940
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 281956 as yet unmatched pairs. 32220 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:21,456,222
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 280910 as yet unmatched pairs. 31174 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:22,490,846
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 280003 as yet unmatched pairs. 30267 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:27,362,322
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 279085 as yet unmatched pairs. 29349 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:28,830,028
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 278723 as yet unmatched pairs. 28984 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,789
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 277926 as yet unmatched pairs. 28187 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,075
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 275932 as yet unmatched pairs. 26193 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:30,095,434
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 274277 as yet unmatched pairs. 24538 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:30,445,287
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 274421 as yet unmatched pairs. 24682 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:31,039,709
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 271847 as yet unmatched pairs. 22107 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:31,477,491
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 270448 as yet unmatched pairs. 20708 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:53,494,559
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 268602 as yet unmatched pairs. 18862 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:57,121,175
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 267273 as yet unmatched pairs. 17533 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr16:58,576,476
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 265647 as yet unmatched pairs. 15907 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:67,149,412
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 263625 as yet unmatched pairs. 13885 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:67,950,684
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 262125 as yet unmatched pairs. 12385 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:69,566,210
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 261308 as yet unmatched pairs. 11565 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:70,744,535
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 259308 as yet unmatched pairs. 9556 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:75,235,659
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 258701 as yet unmatched pairs. 8945 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:84,657,179
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 257025 as yet unmatched pairs. 7268 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr16:88,432,822
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 254692 as yet unmatched pairs. 4935 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr16:88,733,278
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 253680 as yet unmatched pairs. 3912 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:89,562,367
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 253478 as yet unmatched pairs. 3709 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr17:1,354,240
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 252093 as yet unmatched pairs. 81369 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:1,775,146
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 248185 as yet unmatched pairs. 77446 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:4,548,206
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 246281 as yet unmatched pairs. 75542 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:5,419,552
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 244613 as yet unmatched pairs. 73873 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:7,414,663
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 242973 as yet unmatched pairs. 72232 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:7,894,938
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 241404 as yet unmatched pairs. 70663 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:12,752,741
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 239866 as yet unmatched pairs. 69125 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:17,793,590
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 238466 as yet unmatched pairs. 67719 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:21,004,214
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 237182 as yet unmatched pairs. 66435 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:28,924,197
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 235554 as yet unmatched pairs. 64806 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 2s. Last read position: chr17:32,780,730
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 235084 as yet unmatched pairs. 64334 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr17:38,482,565
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 232925 as yet unmatched pairs. 62175 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,176
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 232517 as yet unmatched pairs. 61767 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:40,168,284
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 229819 as yet unmatched pairs. 59067 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:41,763,169
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 229228 as yet unmatched pairs. 58476 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:42,513,950
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 226696 as yet unmatched pairs. 55944 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:44,037,453
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 225267 as yet unmatched pairs. 54515 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:45,396,051
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 223897 as yet unmatched pairs. 53145 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:48,058,981
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 222828 as yet unmatched pairs. 52076 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,536
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 231651 as yet unmatched pairs. 60892 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,731
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 237386 as yet unmatched pairs. 66627 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,100
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 275414 as yet unmatched pairs. 104655 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,960
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 300834 as yet unmatched pairs. 130075 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,608
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 267773 as yet unmatched pairs. 97013 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 125s. Last read position: chr17:50,188,992
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 275975 as yet unmatched pairs. 105215 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,478
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 268974 as yet unmatched pairs. 98214 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,909
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 266104 as yet unmatched pairs. 95344 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,356
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 280977 as yet unmatched pairs. 110217 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,421
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 270520 as yet unmatched pairs. 99760 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,474
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 264467 as yet unmatched pairs. 93706 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,829
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 279883 as yet unmatched pairs. 109122 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,989
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 283662 as yet unmatched pairs. 112901 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,383
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 273210 as yet unmatched pairs. 102449 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,764
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 256985 as yet unmatched pairs. 86224 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,434
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 250397 as yet unmatched pairs. 79636 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,934
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 253251 as yet unmatched pairs. 82490 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,323
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 270420 as yet unmatched pairs. 99659 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,037
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 287866 as yet unmatched pairs. 117105 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,002
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 218683 as yet unmatched pairs. 47922 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,287
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 233423 as yet unmatched pairs. 62662 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,415
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 206092 as yet unmatched pairs. 35331 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 2s. Last read position: chr17:57,849,338
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 186180 as yet unmatched pairs. 15419 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:59,934,237
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 184851 as yet unmatched pairs. 14090 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:64,503,540
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 184444 as yet unmatched pairs. 13683 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:72,647,545
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 182170 as yet unmatched pairs. 11405 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:75,614,200
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 180480 as yet unmatched pairs. 9714 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr17:76,270,248
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 179877 as yet unmatched pairs. 9111 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:78,358,988
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 177571 as yet unmatched pairs. 6805 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,393
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 175628 as yet unmatched pairs. 4860 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:81,700,576
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 174325 as yet unmatched pairs. 3557 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr17:82,082,596
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 172410 as yet unmatched pairs. 1635 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr18:2,960,678
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 170697 as yet unmatched pairs. 6156 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr18:21,530,330
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 169056 as yet unmatched pairs. 4505 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr18:36,067,311
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 167865 as yet unmatched pairs. 3313 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr18:55,261,466
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 166659 as yet unmatched pairs. 2107 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr18:76,441,672
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 165365 as yet unmatched pairs. 813 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr19:758,091
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 165406 as yet unmatched pairs. 75966 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 3s. Last read position: chr19:1,110,831
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 162004 as yet unmatched pairs. 72564 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:1,556,690
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 159769 as yet unmatched pairs. 70329 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:2,352,973
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 157859 as yet unmatched pairs. 68418 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr19:4,048,033
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 156124 as yet unmatched pairs. 66683 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:5,222,924
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 154646 as yet unmatched pairs. 65204 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr19:6,593,334
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 152569 as yet unmatched pairs. 63126 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:7,554,926
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 151401 as yet unmatched pairs. 61958 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr19:9,996,444
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 149509 as yet unmatched pairs. 60066 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr19:10,682,642
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 148047 as yet unmatched pairs. 58604 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 2s. Last read position: chr19:11,446,301
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 147066 as yet unmatched pairs. 57623 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:12,924,500
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 144513 as yet unmatched pairs. 55070 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:14,102,847
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 143256 as yet unmatched pairs. 53813 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:15,161,065
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 141854 as yet unmatched pairs. 52411 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:16,076,135
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 139912 as yet unmatched pairs. 50463 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:17,520,986
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 137648 as yet unmatched pairs. 48199 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:18,461,604
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 135567 as yet unmatched pairs. 46118 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr19:19,197,031
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 134060 as yet unmatched pairs. 44610 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:33,401,806
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 132023 as yet unmatched pairs. 42571 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:35,154,747
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 130924 as yet unmatched pairs. 41471 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:35,755,534
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 129612 as yet unmatched pairs. 40159 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:38,291,955
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 127874 as yet unmatched pairs. 38421 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:38,728,321
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 127125 as yet unmatched pairs. 37672 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:39,406,865
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 126513 as yet unmatched pairs. 37060 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:39,924,425
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 122372 as yet unmatched pairs. 32919 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:40,627,296
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 121537 as yet unmatched pairs. 32084 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,656
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 140952 as yet unmatched pairs. 51499 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,132
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 126993 as yet unmatched pairs. 37540 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:41,719,966
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 139423 as yet unmatched pairs. 49966 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:41,761,410
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 119906 as yet unmatched pairs. 30449 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,780
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 115302 as yet unmatched pairs. 25845 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:43,495,494
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 113355 as yet unmatched pairs. 23895 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:44,908,790
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 112458 as yet unmatched pairs. 22997 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:45,526,162
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 110575 as yet unmatched pairs. 21114 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:46,755,462
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 107678 as yet unmatched pairs. 18217 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:47,755,784
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 106771 as yet unmatched pairs. 17310 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr19:48,703,252
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 104216 as yet unmatched pairs. 14755 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr19:49,211,200
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 103883 as yet unmatched pairs. 14422 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:49,599,509
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 101510 as yet unmatched pairs. 12049 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:49,895,124
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 99253 as yet unmatched pairs. 9792 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:50,478,980
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 98630 as yet unmatched pairs. 9169 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:54,105,957
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 96626 as yet unmatched pairs. 7164 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:55,113,358
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 93987 as yet unmatched pairs. 4524 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:55,655,091
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 92431 as yet unmatched pairs. 2968 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:58,393,027
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 91419 as yet unmatched pairs. 1956 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:2,659,100
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 89065 as yet unmatched pairs. 26270 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:10,639,466
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 87241 as yet unmatched pairs. 24446 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:21,303,392
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 86111 as yet unmatched pairs. 23314 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 2s. Last read position: chr20:31,549,325
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 85315 as yet unmatched pairs. 22518 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:34,077,217
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 84231 as yet unmatched pairs. 21432 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:35,542,869
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 82271 as yet unmatched pairs. 19472 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr20:36,612,080
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 82312 as yet unmatched pairs. 19513 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr20:41,028,959
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 78372 as yet unmatched pairs. 15573 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr20:45,174,926
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 78044 as yet unmatched pairs. 15245 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr20:45,892,829
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 77980 as yet unmatched pairs. 15181 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr20:48,994,507
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 74254 as yet unmatched pairs. 11455 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr20:51,601,158
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 73273 as yet unmatched pairs. 10474 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr20:57,703,224
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 71136 as yet unmatched pairs. 8337 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr20:62,136,948
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 70441 as yet unmatched pairs. 7642 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr20:62,337,621
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 69806 as yet unmatched pairs. 7007 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:63,493,137
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 65923 as yet unmatched pairs. 3124 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr20:63,701,783
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 64199 as yet unmatched pairs. 1400 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,000
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 62460 as yet unmatched pairs. 11515 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,415
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 62360 as yet unmatched pairs. 11414 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr21:25,975,122
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 61964 as yet unmatched pairs. 11018 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr21:33,555,319
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 59522 as yet unmatched pairs. 8576 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr21:38,819,669
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 59104 as yet unmatched pairs. 8158 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr21:43,737,568
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 56451 as yet unmatched pairs. 5505 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr21:45,482,807
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 55002 as yet unmatched pairs. 4056 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr21:46,112,099
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 55736 as yet unmatched pairs. 4790 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr21:46,554,918
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 51060 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr22:20,582,946
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 49367 as yet unmatched pairs. 18993 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:23,779,192
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 49476 as yet unmatched pairs. 19102 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:27,999,138
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 45542 as yet unmatched pairs. 15168 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr22:30,525,398
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 43860 as yet unmatched pairs. 13486 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr22:35,607,290
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 42823 as yet unmatched pairs. 12449 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:36,314,255
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 41818 as yet unmatched pairs. 11444 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:37,805,803
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 40538 as yet unmatched pairs. 10164 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr22:39,316,744
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 37855 as yet unmatched pairs. 7481 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:41,584,527
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 36327 as yet unmatched pairs. 5953 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr22:45,197,182
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 35407 as yet unmatched pairs. 5033 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:50,245,982
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 33154 as yet unmatched pairs. 2780 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr22:50,530,955
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 30904 as yet unmatched pairs. 530 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:3,321,408
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 29661 as yet unmatched pairs. 24903 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:19,359,516
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 28066 as yet unmatched pairs. 23305 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,100
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 26995 as yet unmatched pairs. 22234 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chrX:47,199,209
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 25668 as yet unmatched pairs. 20907 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:48,688,893
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 23897 as yet unmatched pairs. 19136 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chrX:53,193,059
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 22573 as yet unmatched pairs. 17812 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:54,810,113
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 21064 as yet unmatched pairs. 16303 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:71,101,672
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 19786 as yet unmatched pairs. 15025 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:74,591,682
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 18815 as yet unmatched pairs. 14054 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chrX:100,862,760
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 17560 as yet unmatched pairs. 12799 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chrX:115,629,241
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 16303 as yet unmatched pairs. 11542 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:129,768,337
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 14593 as yet unmatched pairs. 9832 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:149,505,112
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 13515 as yet unmatched pairs. 8754 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chrX:153,787,835
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 12193 as yet unmatched pairs. 7432 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:154,350,144
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 12962 as yet unmatched pairs. 8201 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 2s. Last read position: chrX:154,359,987
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 11196 as yet unmatched pairs. 6435 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,187
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 8827 as yet unmatched pairs. 4066 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chrX:154,469,087
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 6135 as yet unmatched pairs. 1374 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,457
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 11318 as yet unmatched pairs. 9214 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,754
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 2104 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,427
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 56 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 637473978 records. 0 pairs never matched.
INFO 2026-06-08 09:02:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141496; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:02:56 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:03:02 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:03:02 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:03:34 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:03:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,582
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,698
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,896
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,052
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,935
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,279
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,384
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,032
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1345
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,315
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,734
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,364
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder Large duplicate set. size = 1547
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,359
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,765
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder Large duplicate set. size = 1925
INFO 2026-06-08 09:04:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,942
INFO 2026-06-08 09:04:29 OpticalDuplicateFinder Large duplicate set. size = 1426
INFO 2026-06-08 09:04:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,051
INFO 2026-06-08 09:04:29 OpticalDuplicateFinder Large duplicate set. size = 1283
INFO 2026-06-08 09:04:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,530
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,521
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,440
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,119
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1569
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,354
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,621
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1209
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,962
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,848
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,293
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,330
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,316
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,875
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1383
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,308
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,824
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 09:04:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,930
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,376
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1359
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,153
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1471
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,087
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1745
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,736
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,920
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,377
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1812
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,284
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,831
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,075
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,051
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1976
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,996
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,238
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1307
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,882
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,068
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1659
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,403
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,523
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,314
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1274
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,332
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 09:04:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,525
INFO 2026-06-08 09:04:49 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:04:50 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:05:53 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:06:04 MarkDuplicates After generateDuplicateIndexes freeMemory: 203929800; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:06:04 MarkDuplicates Marking 452217185 records as duplicates.
INFO 2026-06-08 09:06:04 MarkDuplicates Found 14907465 optical duplicate clusters.
INFO 2026-06-08 09:06:04 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:06:21 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,850,457
INFO 2026-06-08 09:06:36 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:43,591,837
INFO 2026-06-08 09:06:52 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:47s. Time for last 10,000,000: 15s. Last read position: chr1:120,005,332
INFO 2026-06-08 09:07:07 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:156,200,033
INFO 2026-06-08 09:07:23 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 15s. Last read position: chr1:205,268,948
INFO 2026-06-08 09:07:38 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:34s. Time for last 10,000,000: 15s. Last read position: chr2:26,970,770
INFO 2026-06-08 09:07:54 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 15s. Last read position: chr2:69,326,156
INFO 2026-06-08 09:08:10 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 15s. Last read position: chr2:151,590,085
INFO 2026-06-08 09:08:25 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:21s. Time for last 10,000,000: 15s. Last read position: chr2:188,999,530
INFO 2026-06-08 09:08:41 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 15s. Last read position: chr2:215,408,307
INFO 2026-06-08 09:08:56 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 15s. Last read position: chr2:237,376,924
INFO 2026-06-08 09:09:12 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:07s. Time for last 10,000,000: 15s. Last read position: chr3:49,099,568
INFO 2026-06-08 09:09:27 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 15s. Last read position: chr3:127,017,783
INFO 2026-06-08 09:09:42 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:38s. Time for last 10,000,000: 15s. Last read position: chr3:195,784,954
INFO 2026-06-08 09:09:58 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:53s. Time for last 10,000,000: 15s. Last read position: chr4:76,756,566
INFO 2026-06-08 09:10:13 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 15s. Last read position: chr5:32,364,252
INFO 2026-06-08 09:10:29 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:24s. Time for last 10,000,000: 15s. Last read position: chr5:141,528,516
INFO 2026-06-08 09:10:44 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 15s. Last read position: chr6:7,230,933
INFO 2026-06-08 09:10:59 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 15s. Last read position: chr6:31,829,330
INFO 2026-06-08 09:11:15 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 15s. Last read position: chr6:75,308,751
INFO 2026-06-08 09:11:31 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:26s. Time for last 10,000,000: 15s. Last read position: chr6:169,668,053
INFO 2026-06-08 09:11:46 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:42s. Time for last 10,000,000: 15s. Last read position: chr7:45,103,366
INFO 2026-06-08 09:12:02 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:57s. Time for last 10,000,000: 15s. Last read position: chr7:99,648,249
INFO 2026-06-08 09:12:17 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 15s. Last read position: chr7:107,195,885
INFO 2026-06-08 09:12:33 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 15s. Last read position: chr7:158,316,902
INFO 2026-06-08 09:12:48 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:44s. Time for last 10,000,000: 15s. Last read position: chr8:100,924,961
INFO 2026-06-08 09:13:04 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 15s. Last read position: chr8:143,863,142
INFO 2026-06-08 09:13:19 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 15s. Last read position: chr9:33,256,837
INFO 2026-06-08 09:13:34 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:30s. Time for last 10,000,000: 15s. Last read position: chr9:122,214,296
INFO 2026-06-08 09:13:50 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:45s. Time for last 10,000,000: 15s. Last read position: chr9:137,614,685
INFO 2026-06-08 09:14:06 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 15s. Last read position: chr10:78,035,376
INFO 2026-06-08 09:14:21 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 15s. Last read position: chr10:122,602,056
INFO 2026-06-08 09:14:37 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:32s. Time for last 10,000,000: 15s. Last read position: chr11:33,341,571
INFO 2026-06-08 09:14:52 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 15s. Last read position: chr11:63,997,417
INFO 2026-06-08 09:15:07 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:02s. Time for last 10,000,000: 15s. Last read position: chr11:72,757,866
INFO 2026-06-08 09:15:23 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:18s. Time for last 10,000,000: 15s. Last read position: chr12:883,030
INFO 2026-06-08 09:15:38 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:33s. Time for last 10,000,000: 15s. Last read position: chr12:52,054,889
INFO 2026-06-08 09:15:54 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 15s. Last read position: chr12:69,258,706
INFO 2026-06-08 09:16:09 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 15s. Last read position: chr12:125,016,450
INFO 2026-06-08 09:16:25 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:20s. Time for last 10,000,000: 15s. Last read position: chr13:111,217,817
INFO 2026-06-08 09:16:40 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 15s. Last read position: chr14:69,122,350
INFO 2026-06-08 09:16:56 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 15s. Last read position: chr14:105,643,242
INFO 2026-06-08 09:17:11 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:07s. Time for last 10,000,000: 15s. Last read position: chr15:60,349,156
INFO 2026-06-08 09:17:27 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:22s. Time for last 10,000,000: 15s. Last read position: chr15:92,941,842
INFO 2026-06-08 09:17:42 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:38s. Time for last 10,000,000: 15s. Last read position: chr16:14,878,728
INFO 2026-06-08 09:17:58 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:53s. Time for last 10,000,000: 15s. Last read position: chr16:29,483,789
INFO 2026-06-08 09:18:13 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 15s. Last read position: chr16:67,950,684
INFO 2026-06-08 09:18:29 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:24s. Time for last 10,000,000: 15s. Last read position: chr17:4,548,206
INFO 2026-06-08 09:18:45 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 15s. Last read position: chr17:39,700,176
INFO 2026-06-08 09:19:00 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 15s. Last read position: chr17:50,187,960
INFO 2026-06-08 09:19:16 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 15s. Last read position: chr17:50,194,383
INFO 2026-06-08 09:19:31 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 15s. Last read position: chr17:59,934,237
INFO 2026-06-08 09:19:46 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:42s. Time for last 10,000,000: 15s. Last read position: chr18:21,530,330
INFO 2026-06-08 09:20:02 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:57s. Time for last 10,000,000: 15s. Last read position: chr19:6,593,334
INFO 2026-06-08 09:20:17 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:12s. Time for last 10,000,000: 15s. Last read position: chr19:18,461,604
INFO 2026-06-08 09:20:32 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:27s. Time for last 10,000,000: 15s. Last read position: chr19:41,708,656
INFO 2026-06-08 09:20:47 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 15s. Last read position: chr19:48,703,252
INFO 2026-06-08 09:21:02 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 15s. Last read position: chr20:10,639,466
INFO 2026-06-08 09:21:18 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 15s. Last read position: chr20:51,601,158
INFO 2026-06-08 09:21:33 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 14s. Last read position: chr21:38,819,669
INFO 2026-06-08 09:21:48 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:43s. Time for last 10,000,000: 15s. Last read position: chr22:36,314,255
INFO 2026-06-08 09:22:03 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 15s. Last read position: chrX:47,199,209
INFO 2026-06-08 09:22:19 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:14s. Time for last 10,000,000: 15s. Last read position: chrX:153,787,835
INFO 2026-06-08 09:22:36 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-08 09:22:37 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:22:37 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:22:37 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:22:37 MarkDuplicates Before output close freeMemory: 203903144; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:22:37 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:22:37 MarkDuplicates After output close freeMemory: 104137016; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:22:37 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.27 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory