[W::hts_idx_load3] The index file is older than the data file: 659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	274733229
Known Splicing Events:	272146998
Partial Novel Splicing Events:	1078429
Novel Splicing Events:	1361472
Filtered Splicing Events:	146330

Total splicing  Junctions:	324853
Known Splicing Junctions:	211175
Partial Novel Splicing Junctions:	53332
Novel Splicing Junctions:	60346

===================================================================
Create BED file ...
Create Interact file ...