Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/aca3056163790b944a51a20dfe1a61/659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/1b0aec3439528a400c02ca9b470ab3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/a5715087dac937adba901ed7923e30/659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/1b0aec3439528a400c02ca9b470ab3/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 274733229
[W::hts_idx_load3] The index file is older than the data file: 659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	274733229
Known Splicing Events:	272146998
Partial Novel Splicing Events:	1078429
Novel Splicing Events:	1361472
Filtered Splicing Events:	146330

Total splicing  Junctions:	324853
Known Splicing Junctions:	211175
Partial Novel Splicing Junctions:	53332
Novel Splicing Junctions:	60346

===================================================================
Create BED file ...
Create Interact file ...