.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (659_cAd-T1-TRNA-1_B23WHTKLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/0a2959e2cba07e20e33b1c27049958/.command.sh
Size: 191 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (659_cAd-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "659_cAd-T1-TRNA-1_B23WHTKLT4_1.md.bam" > 659_cAd-T1-TRNA-1_B23WHTKLT4_1_full_bam_saturation_values.txt