File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/c2c00ac6047337ad4d6f2d2e44a0c8/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:17:03
                             Started mapping on |	Jun 08 10:23:38
                                    Finished on |	Jun 08 11:28:14
       Mapping speed, Million of reads per hour |	274.59

                          Number of input reads |	295645013
                      Average input read length |	248
                                    UNIQUE READS:
                   Uniquely mapped reads number |	284737337
                        Uniquely mapped reads % |	96.31%
                          Average mapped length |	247.43
                       Number of splices: Total |	304658444
            Number of splices: Annotated (sjdb) |	300185643
                       Number of splices: GT/AG |	300690386
                       Number of splices: GC/AG |	2095549
                       Number of splices: AT/AC |	239120
               Number of splices: Non-canonical |	1633389
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.15
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.63
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8311818
             % of reads mapped to multiple loci |	2.81%
        Number of reads mapped to too many loci |	344573
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1942019
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	309266
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%