Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/92d3f066af5660ddd2d30abd084076/tih_rna_sample_00121_B23WHTKLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/efb10b95fa4130cd63f0cf7a7edf98/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/efb10b95fa4130cd63f0cf7a7edf98/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory