File Info

Filename
659_cRa-T1-TRNA-1_B23WHTKLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/fa3fc5236d3a3816ee55f42d09a2e2/659_cRa-T1-TRNA-1_B23WHTKLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:42:19
                             Started mapping on |	Jun 08 07:44:53
                                    Finished on |	Jun 08 08:41:55
       Mapping speed, Million of reads per hour |	311.06

                          Number of input reads |	295675936
                      Average input read length |	262
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285330066
                        Uniquely mapped reads % |	96.50%
                          Average mapped length |	262.01
                       Number of splices: Total |	418137341
            Number of splices: Annotated (sjdb) |	413556598
                       Number of splices: GT/AG |	414876962
                       Number of splices: GC/AG |	2093328
                       Number of splices: AT/AC |	223710
               Number of splices: Non-canonical |	943341
                      Mismatch rate per base, % |	0.17%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.10
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5516595
             % of reads mapped to multiple loci |	1.87%
        Number of reads mapped to too many loci |	253927
             % of reads mapped to too many loci |	0.09%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	575686
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	2059599
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	158262
                     % of reads unmapped: other |	0.05%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3308838
                            % of chimeric reads |	1.12%