File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/81791f1b6a856adf2a027f58dd6a2b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:15:48
                             Started mapping on |	Jun 08 08:22:12
                                    Finished on |	Jun 08 08:39:42
       Mapping speed, Million of reads per hour |	350.26

                          Number of input reads |	102160001
                      Average input read length |	232
                                    UNIQUE READS:
                   Uniquely mapped reads number |	96958047
                        Uniquely mapped reads % |	94.91%
                          Average mapped length |	231.29
                       Number of splices: Total |	79536906
            Number of splices: Annotated (sjdb) |	78189018
                       Number of splices: GT/AG |	78343802
                       Number of splices: GC/AG |	628722
                       Number of splices: AT/AC |	52712
               Number of splices: Non-canonical |	511670
                      Mismatch rate per base, % |	0.46%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.12
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.70
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4126990
             % of reads mapped to multiple loci |	4.04%
        Number of reads mapped to too many loci |	213076
             % of reads mapped to too many loci |	0.21%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	743113
                 % of reads unmapped: too short |	0.73%
                Number of reads unmapped: other |	118775
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%