File Info

Filename
multiqc_general_stats_controls.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/61599851f4282c181040254bab1126/multiqc_general_stats_controls.tsv
Size
1.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:MULTIQC_EXTRACT_CONTROLS (multiqc_data)
Attempt

Content

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sample_id AFTER_FILTERING_Q30_RATE CONTAMINATION_PCT FRAC_ANTISENSE FRAC_UNMAPPED FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN IS_CONTAMINATED N_Q30 PERCENT_DUPLICATION PCT_MITO_EST_COUNTS MITOCHONDRIAL_CONTAMINATION SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE UNIQUE_READS_RSEQC UNIQUELY_MAPPED_PERCENT GC_BIAS PCT_ADAPTER PCT_DUPLICATION PCT_HK_EST_COUNTS PCT_HK_TPM PCT_MALE_EST_COUNTS PCT_MALE_TPM PCT_RIBO_EST_COUNTS RIBOSOMAL_CONTAMINATION PCT_SURVIVING PERCENT_GC READS MAPPED_READS AVG_SEQUENCE_LENGTH PERCENT_DUPLICATES PERCENT_FAILS TOTAL_SEQUENCES FRAC_BASES_GT30X FRAC_READS_OFF_TARGET FRAC_READS_ON_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT100X FRAC_PAIRS_OFF_TARGET FRAC_PAIRS_ON_TARGET PAIRS_OFF_TARGET PAIRS_ON_TARGET READS_OFF_TARGET READS_ON_TARGET EXPECTED_DISTINCT FRAC_DUPES UNIQUE_READS TOTAL_READS AFTER_FILTERING_GC_CONTENT AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS FRAGMENT_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_ALIGNED PROPER_PAIRS_PERCENT PSEUDOALIGNED_READS
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 0.972979 62.47 0.9419 0.004501 178.1 162.0 Yes 0.973747 0.403015 0.007 0.015 3.966 575712631.0 96.48 0.0 37.56471633333333 29.7972 0.696 0.985 0.0 0.0 1.659 4.815 98.73509 592410540.0 285788252.0 0.721171 0.045128 0.947355 755.006572 306.0 0.62612 0.02468 0.97532 4322675.0 170826735.0 16008505.0 336060150.0 540326763.0 0.401201 354735120.0 9999000000.0 0.548451 79805891446.0 592410540.0 91.2347418670277
NTC_0001_0001_B23WHTKLT4_1 0.891326 N/A 0.4305 0.57392 90.2 31.0 Skipped 0.894323 0.604777 0.0 0.0 0.0 7369.0 9.97 0.0 50.61240729313832 67.3407 0.035 0.078 0.0 0.0 0.0 0.0 3.213321675239495 53950.0 2689.0 0.0 0.220435 0.006417 0.000296 0.0 0.0 0.969353 0.030647 4270.0 135.0 8828.0 257.0 48139.0 0.257683 40048.0 9999000000.0 0.664522 5110262.0 53950.0 2.9582438643502336
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