File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0de089887e8d5fd51eea8a84f05f7e/.command.log
Size
1.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_6i-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/6cf1e54a20537abffbf4e349c5c041/659_6i-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0de089887e8d5fd51eea8a84f05f7e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0de089887e8d5fd51eea8a84f05f7e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3fd441f8cefac7c40196e85459dd1f/659_6i-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/3 [00:00<?, ?it/s]TMPRSS2--ERG
starfusion
arriba
CPNE4--ADGRG7
starfusion
arriba
TLK2P1--AC110079.1
starfusion

Processing TMPRSS2--ERG:   0%|          | 0/3 [00:00<?, ?it/s]
Processing TMPRSS2--ERG:  33%|███▎      | 1/3 [00:00<00:00,  9.25it/s]
Processing CPNE4--ADGRG7:  33%|███▎      | 1/3 [00:00<00:00,  9.25it/s]
Processing CPNE4--ADGRG7:  67%|██████▋   | 2/3 [00:00<00:00,  9.43it/s]
Processing TLK2P1--AC110079.1:  67%|██████▋   | 2/3 [00:00<00:00,  9.43it/s]
Processing TLK2P1--AC110079.1: 100%|██████████| 3/3 [00:00<00:00,  9.49it/s]
Processing TLK2P1--AC110079.1: 100%|██████████| 3/3 [00:00<00:00,  9.44it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory