File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/2ff14d44ce4c98f1935b74422a5272/.command.log
Size
717 bytes
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/6e427b6f624ec27f1baaf013f392b9/659_cRB-T1-TRNA-1_B23WHTKLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/2ff14d44ce4c98f1935b74422a5272/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/2ff14d44ce4c98f1935b74422a5272/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  659_cRB-T1-TRNA-1_B23WHTKLT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: 659_cRB-T1-TRNA-1_B23WHTKLT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated