AIH curated blacklist: matched 15 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 453
Pass (FILTER=PASS): 62 (13.7%)
Fail (FILTER=FAIL): 391 (86.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 15
All 15 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 71
confidence_below_min(medium<high): 69
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 34
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 26
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 24
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 22
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 21
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 21
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 20
confidence_below_min(low<high): 18
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 5
Breakdown by confidence:
high: 62 pass, 10 fail (total: 72)
low: 0 pass, 203 fail (total: 203)
medium: 0 pass, 178 fail (total: 178)
Arriba filter: 453 rows -> 62 PASS; wrote FFPE_HD789_01_RNA_13_B23WHTKLT4_1.arriba.fusions.filtered.tsv and FFPE_HD789_01_RNA_13_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_HD789_01_RNA_13_B23WHTKLT4_1.arriba.fusions.filter_summary.txt