File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/35d1fcc336413736fbed9993260626/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (20260515_LH00995_0042_B23WHTKLT4)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/bb54c7785bbb6ca72dbd70b700acb8/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d13033d57cb973201901a3d6e04970/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/b2c4441939f937a33580c414394d5f/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0042_B23WHTKLT4/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/b2c4441939f937a33580c414394d5f/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/3b77b61c55641c57b6d6c509de342d/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0042_B23WHTKLT4/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/35d1fcc336413736fbed9993260626/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/bb54c7785bbb6ca72dbd70b700acb8/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/b2c4441939f937a33580c414394d5f/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6e3167d0d62edcc663407cb4e97308/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/3e041efcdec34f9afec8e655c4a811/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d13033d57cb973201901a3d6e04970/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0042_B23WHTKLT4/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6e3167d0d62edcc663407cb4e97308/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/09d2110e779767ef2b2272c5deb745/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/09d2110e779767ef2b2272c5deb745/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d13033d57cb973201901a3d6e04970/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/09d2110e779767ef2b2272c5deb745/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/3b77b61c55641c57b6d6c509de342d/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/bb54c7785bbb6ca72dbd70b700acb8/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/3dfbda8ffbb5710a51d4d19f5d234e/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/3dfbda8ffbb5710a51d4d19f5d234e/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/3e041efcdec34f9afec8e655c4a811/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/3e041efcdec34f9afec8e655c4a811/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6e3167d0d62edcc663407cb4e97308/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/3dfbda8ffbb5710a51d4d19f5d234e/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/35d1fcc336413736fbed9993260626/.command.run
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0042_B23WHTKLT4/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/3b77b61c55641c57b6d6c509de342d/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated